RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7981
(216 letters)
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate
cyclohydrolase...; THF, bifunctional, oxidoreductase;
HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2
PDB: 1dia_A* 1dib_A* 1dig_A*
Length = 301
Score = 303 bits (779), Expect = e-105
Identities = 119/205 (58%), Positives = 155/205 (75%), Gaps = 1/205 (0%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+IL+G +S IR LK +V +LKE++P F P LAI+QVG R+DSN+YI +K+KAA+EI
Sbjct: 4 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 63
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI A H+KLPR+ TE E++ + LNED +VHG +VQ+PLDS+N IN V ++++PEKD
Sbjct: 64 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 123
Query: 130 VDGLNTINEGRVAIGDMN-GFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
VDGL +IN GR+A GD+N FIPCTP G LELIK T V IAG +AVV+GRSKIVG P +
Sbjct: 124 VDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHD 183
Query: 189 LLKWKHATVTVCHSKTKNIQDVVKS 213
LL W +ATVT CHSKT ++ + V
Sbjct: 184 LLLWNNATVTTCHSKTAHLDEEVNK 208
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase,
hydrolase, leishmaniasis; 2.70A {Leishmania major}
Length = 300
Score = 282 bits (723), Expect = 2e-96
Identities = 87/207 (42%), Positives = 126/207 (60%), Gaps = 5/207 (2%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
AQI+ G A++ IR LK++V L+E PGLA + VG R DS Y+++K KAA E+
Sbjct: 6 AQIIDGKAIAAAIRSELKDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEV 65
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G+ + +V+LP I++ L ++KLN DP+ HGIIVQ+PL +N + + P KD
Sbjct: 66 GMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPK--HLNENRAIEKIHPHKD 123
Query: 130 VDGLNTINEGRVAIG-DMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAE 188
D L +N G + F PCT GV+ L+KR + +AG AVVLGRS IVG P A
Sbjct: 124 ADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAA 183
Query: 189 LLKWKHATVTVCHS--KTKNIQDVVKS 213
LL ++ATVT+ HS T+++ D +++
Sbjct: 184 LLMKENATVTIVHSGTSTEDMIDYLRT 210
>3l07_A Bifunctional protein fold; structural genomics, IDP01849,
methylenetetrahydrofolate dehydrogenase; 1.88A
{Francisella tularensis}
Length = 285
Score = 249 bits (639), Expect = 7e-84
Identities = 75/204 (36%), Positives = 112/204 (54%), Gaps = 3/204 (1%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
++ G ++S D++E L +V++ K P L + VG S Y+ K KA ++
Sbjct: 4 MILIDGKSLSKDLKERLATQVQEYKHHT-AITPKLVAIIVGNDPASKTYVASKEKACAQV 62
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GID+Q + LP TE ELL + +LN D SVH I+VQ+PL + IN V S+ PEKD
Sbjct: 63 GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAH--INKNNVIYSIKPEKD 120
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + N GR+ + D CTP G++ +++ + G AVV+G S +VG P ++L
Sbjct: 121 VDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQL 180
Query: 190 LKWKHATVTVCHSKTKNIQDVVKS 213
L ATVT CH T +++
Sbjct: 181 LLNAKATVTTCHRFTTDLKSHTTK 204
>3p2o_A Bifunctional protein fold; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; HET: NAD; 2.23A
{Campylobacter jejuni subsp}
Length = 285
Score = 248 bits (637), Expect = 1e-83
Identities = 84/204 (41%), Positives = 123/204 (60%), Gaps = 4/204 (1%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
+L G A+S I+E LKE+ + LK + E LA++ VG S Y++ K KA +E
Sbjct: 4 MTLLDGKALSAKIKEELKEKNQFLKSK--GIESCLAVILVGDNPASQTYVKSKAKACEEC 61
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI + L +IT+ ELL+ + LN D SVHGI+VQ+PL I L+ +S+ KD
Sbjct: 62 GIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDH--ICKDLILESIISSKD 119
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + IN G + +G +GF+PCTP GV++L+K + + G +AV++G S IVG P A +
Sbjct: 120 VDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATM 179
Query: 190 LKWKHATVTVCHSKTKNIQDVVKS 213
L ATV+VCH KTK++ +
Sbjct: 180 LLNAGATVSVCHIKTKDLSLYTRQ 203
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase,
cyclcohydrolase, channeling, oxidoreductase,hydrolase;
2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Length = 288
Score = 243 bits (624), Expect = 1e-81
Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 4/204 (1%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+I+ G ++ +R + ++V+ PGLA+V VG S +Y+ K KA +E+
Sbjct: 3 AKIIDGKTIAQQVRSEVAQKVQARIAAG-LRAPGLAVVLVGSNPASQIYVASKRKACEEV 61
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G ++ LP + +E ELL + LN D ++ GI+VQ+PL + I+ + V + + P+KD
Sbjct: 62 GFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAG--IDNVKVLERIHPDKD 119
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + N GR+ PCTP G++ L++R N+ G NAVV+G S IVG P +
Sbjct: 120 VDGFHPYNVGRLCQR-APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSME 178
Query: 190 LKWKHATVTVCHSKTKNIQDVVKS 213
L T TV H TKN++ V++
Sbjct: 179 LLLAGCTTTVTHRFTKNLRHHVEN 202
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A
{Pseudomonas aeruginosa PAO1}
Length = 286
Score = 243 bits (623), Expect = 2e-81
Identities = 75/204 (36%), Positives = 123/204 (60%), Gaps = 4/204 (1%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
AQ++ G A++ ++R+ + +RV + +++ PGLA++ VG S VY+ K K +E+
Sbjct: 5 AQLIDGKAIAANLRQQIAQRVTERRQQG-LRVPGLAVILVGTDPASQVYVAHKRKDCEEV 63
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G +Q LP ++ +LL+ + +LN+DP++ GI+VQ+PL + ++A L+ + + P+KD
Sbjct: 64 GFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAH--LDASLLLERIHPDKD 121
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
VDG + N GR+A M PCTP G++ L+ T + G +AVV+G S IVG P A
Sbjct: 122 VDGFHPYNIGRLAQR-MPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALE 180
Query: 190 LKWKHATVTVCHSKTKNIQDVVKS 213
L TVTV H T+++ D V
Sbjct: 181 LLLGGCTVTVTHRFTRDLADHVSR 204
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate
cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis}
PDB: 2c2y_A
Length = 281
Score = 237 bits (607), Expect = 3e-79
Identities = 71/206 (34%), Positives = 110/206 (53%), Gaps = 7/206 (3%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A +L G A +I LK+RV L PGL + VG S Y+R K ++
Sbjct: 3 AIMLDGKATRDEIFGDLKQRVAALDAA--GRTPGLGTILVGDDPGSQAYVRGKHADCAKV 60
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI + LP I+ L + +LN +P G IVQ+PL ++ + V P KD
Sbjct: 61 GITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPK--HLDENAALERVDPAKD 118
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAEL 189
DGL+ N GR+ +G +PCTP G++ L++R +++IAG + VV+GR VG P L
Sbjct: 119 ADGLHPTNLGRLVLG-TPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLL 177
Query: 190 L--KWKHATVTVCHSKTKNIQDVVKS 213
L + ++ATVT+CH+ T+++ + +
Sbjct: 178 LTRRSENATVTLCHTGTRDLPALTRQ 203
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate
dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 3ngl_A
Length = 276
Score = 229 bits (586), Expect = 4e-76
Identities = 58/203 (28%), Positives = 107/203 (52%), Gaps = 11/203 (5%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIG 70
+IL G ++ E L +++ EP L ++Q+G E +++Y R K++ K+IG
Sbjct: 2 KILRGEEIAEKKAENLHGIIERSG-----LEPSLKLIQIGDNEAASIYARAKIRRGKKIG 56
Query: 71 IDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDV 130
I + I+ +LL R+ L +DP ++GI+++ PL + + ++ KDV
Sbjct: 57 IAVDL-EKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKG--FDYYEIVRNIPYYKDV 113
Query: 131 DGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELL 190
D L+ N+G +A+ +P TP V++++ ++ RS +VG P + +L
Sbjct: 114 DALSPYNQGLIALN-REFLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMML 170
Query: 191 KWKHATVTVCHSKTKNIQDVVKS 213
++ TV+VCHSKTK+I + +S
Sbjct: 171 LNRNYTVSVCHSKTKDIGSMTRS 193
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding
domain, monofunctional, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB:
1ee9_A*
Length = 320
Score = 219 bits (559), Expect = 2e-71
Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 22/214 (10%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
+ + + V+ + V++ K+ P L + +Y K ++ +
Sbjct: 5 GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESM 64
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G L + L + + N D SV+GI+V P+ + + V EKD
Sbjct: 65 GF---RYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPV--FGNAQDQYLQQVVCKEKD 119
Query: 130 VDGLNTINEGRVAIG--------DMNGFIPCTPNGVLELIKRTNVT---------IAGTN 172
V+GLN + + + +PCTP ++++++ + + G
Sbjct: 120 VEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKK 179
Query: 173 AVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKN 206
+V+ RS+IVG P A LL ATV
Sbjct: 180 CIVINRSEIVGRPLAALLANDGATVYSVDVNNIQ 213
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 48.0 bits (113), Expect = 2e-07
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 27 KERVKKLKERL----PDFEPGLAI 46
K+ +KKL+ L D P LAI
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 43/257 (16%), Positives = 87/257 (33%), Gaps = 76/257 (29%)
Query: 11 QILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVG----GREDS----NVYIRMK 62
Q+ + VS R + KL++ L + P ++ G G+ + +V + K
Sbjct: 124 QVFAKYNVS---RL---QPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYK 175
Query: 63 MKAAKEIGI---DAQHVKLPRSITEI--ELLSRLKKLNEDPSVHGIIVQMPLDSDND--- 114
++ + I + ++ P ++ E+ +LL ++ S H +++ + S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 115 --------INAMLVTDSV-SPE-----------------KDV-DGLNTINEGRVAIGDMN 147
N +LV +V + + K V D L+ +++ +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 148 -GFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTP-----AAELLK--------WK 193
TP+ V L+ + L R + P AE ++ WK
Sbjct: 296 MTL---TPDEVKSLLLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 194 HATVTVCHSKTKNIQDV 210
H V K I +
Sbjct: 349 H----VNCDKLTTIIES 361
Score = 31.0 bits (69), Expect = 0.38
Identities = 32/212 (15%), Positives = 60/212 (28%), Gaps = 65/212 (30%)
Query: 20 GDIREGLKERVKK---LKERLPDFEPGL-------AIVQVGGREDSNVYIRMKMKAAKEI 69
DI ++ K+ + D + I+ + + + + +E
Sbjct: 19 KDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 70 GIDAQHVKLPRSITEIE------LLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDS 123
+ + + E+ L+S +K PS+ + D + N + +
Sbjct: 78 MVQ-------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 124 VSPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVG 183
VS + L +LEL NV I G VLG K
Sbjct: 131 VSRLQPYLKLR--------------------QALLELRPAKNVLIDG----VLGSGKTW- 165
Query: 184 TPAAELLK-------------WKHATVTVCHS 202
A ++ W + C+S
Sbjct: 166 -VALDVCLSYKVQCKMDFKIFW--LNLKNCNS 194
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 4e-04
Identities = 45/226 (19%), Positives = 74/226 (32%), Gaps = 67/226 (29%)
Query: 1 MAESAVQQQAQILSGT-----AVSGDIREGLKERVKKLKERLPDFEPGLAI--------- 46
+ S ++ + G ++S +E +++ V K LP + I
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-GKQVEISLVNGAKNL 377
Query: 47 VQVGGREDS----NVYIRMKMKAAKEIGIDAQHVKLPRS------------ITE---IEL 87
V V G S N+ +R K KA G+D Q ++P S + L
Sbjct: 378 V-VSGPPQSLYGLNLTLR-KAKAPS--GLD-QS-RIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 88 LSR-LKKLNEDPSVHGIIV-----QMPL----------DSDNDINAMLVTDSVSPEKDVD 131
L +N+D + + Q+P+ I+ +V D + V
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV-DCII-RLPVK 489
Query: 132 GLNTINEGRVAIGDMNGFIPCTPNGVLELIKR------TNVTIAGT 171
T I D F P +G+ L R V +AGT
Sbjct: 490 WETTTQFKATHILD---FGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Score = 36.2 bits (83), Expect = 0.006
Identities = 39/209 (18%), Positives = 69/209 (33%), Gaps = 79/209 (37%)
Query: 21 DIREGLKERVKKLKERLPDFE---------PGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
+I E L+ PD + P + ++Q+ ++ + AK +G
Sbjct: 214 NILEWLENP-----SNTPDKDYLLSIPISCPLIGVIQL-----AHYVV-----TAKLLGF 258
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVH--GIIVQMPL---DS-----DNDINAMLV- 120
P EL S LK + H G++ + + DS + A+ V
Sbjct: 259 T------PG-----ELRSYLKGA----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 121 ------------TDSVSPEKDVDGLNTINEGR----VAIGDMNGFIPCTPNGVLELIKRT 164
S+ P D L NEG ++I ++ T V + + +T
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLEN-NEGVPSPMLSISNL------TQEQVQDYVNKT 356
Query: 165 NVTIAGTNAVVL----GRSKIV--GTPAA 187
N + V + G +V G P +
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Score = 29.2 bits (65), Expect = 1.4
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 18/84 (21%)
Query: 15 GTAVSGDIREGLKERVKKLKERLPDF-E------PGLAIVQVGGRED-----SNVYIRMK 62
G + +E L+ V+++ +R E V G +NV
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV-AAGDLRALDTVTNV----- 1868
Query: 63 MKAAKEIGIDAQHVKLPRSITEIE 86
+ K ID ++ S+ E+E
Sbjct: 1869 LNFIKLQKIDIIELQKSLSLEEVE 1892
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 37.2 bits (86), Expect = 0.002
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 157 VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDV 210
++ I+ T+ TI G N VLG ++ G A A V V ++ + +
Sbjct: 142 IMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARI 194
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 31.7 bits (72), Expect = 0.16
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 157 VLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
++ I+ T+ TI G+ VLG G A A V V
Sbjct: 144 IMLAIQHTDYTIHGSQVAVLGLG-RTGMTIARTFAALGANVKVG 186
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 30.0 bits (68), Expect = 0.61
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 161 IKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
I+R T+V +AG AVV G VG +A+ L A V V
Sbjct: 237 IRRGTDVMMAGKVAVVCGYGD-VGKGSAQSLAGAGARVKVT 276
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; 2.40A {Thermus thermophilus} SCOP:
d.129.3.6
Length = 147
Score = 28.6 bits (64), Expect = 1.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 35 ERLPDFEPGLAIVQVGGREDSNVYIRMKMKAA 66
E L + + ++V RE + R A
Sbjct: 25 EGLKPYLKEVESLEVVAREGARTRSRWVAVAM 56
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 28.8 bits (65), Expect = 1.4
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 161 IKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
+KR T++ G VV G + VG LK + V V
Sbjct: 210 LKRTTDMMFGGKQVVVCGYGE-VGKGCCAALKAMGSIVYVT 249
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 28.3 bits (63), Expect = 1.7
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 156 GVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDVVK 212
GV ++K ++ G AVVL + VG +A LL + A V +C K Q
Sbjct: 105 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 161
>4epa_A Pesticin receptor; TONB dependent transporter, iron import, metal
transport; HET: LDA; 3.20A {Yersinia pestis}
Length = 655
Score = 28.5 bits (64), Expect = 2.2
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 16 TAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIR 60
T VS V + LP PGL I G S + +R
Sbjct: 34 TVVSAPELS--DAGVTASDK-LPRVLPGLNIENSGNMLFSTISLR 75
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 2.5
Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 22/82 (26%)
Query: 22 IREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEIGIDAQHVKLPRS 81
IR+ +E+ K+L+E + + KA K+ ++ + +
Sbjct: 87 IRKWREEQRKRLQEL--------------DAASKVMEQEWREKAKKD--LEEWNQRQSEQ 130
Query: 82 ITEIELLSR------LKKLNED 97
+ + ++ +R ++ + D
Sbjct: 131 VEKNKINNRIADKAFYQQPDAD 152
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 27.6 bits (62), Expect = 3.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 161 IKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
IKR T+V IAG A V G VG A L+ A V V
Sbjct: 201 IKRATDVMIAGKTACVCGYGD-VGKGCAAALRGFGARVVVT 240
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 27.2 bits (61), Expect = 5.3
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 165 NVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
V + G L RS G AA LL A VTV
Sbjct: 11 KVLVLG-----LARS---GEAAARLLAKLGAIVTVN 38
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 26.7 bits (59), Expect = 6.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 152 CTPNGVLELIKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
T + +++ I R T+ I G ++ G VG AE +K + A V+V
Sbjct: 255 GTRHSLIDGINRGTDALIGGKKVLICGYGD-VGKGCAEAMKGQGARVSVT 303
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases,
csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB:
3n2a_A* 3pyz_A* 3qcz_A*
Length = 437
Score = 26.8 bits (60), Expect = 7.1
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 22 IREGLKERVKKLKERLPDFEPGLAIVQVGG 51
I GL ERVK++ ERL +P I V G
Sbjct: 31 IELGL-ERVKQVAERLDLLKPAPKIFTVAG 59
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 26.3 bits (58), Expect = 9.2
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 152 CTPNGVLELIKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
+ + + + R T+ I+G V+ G VG A +K A V +
Sbjct: 238 GCRHSLPDGLMRATDFLISGKIVVICGYGD-VGKGCASSMKGLGARVYIT 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.367
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,263,924
Number of extensions: 204020
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 40
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.0 bits)