RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7981
(216 letters)
>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 117 bits (294), Expect = 1e-34
Identities = 69/123 (56%), Positives = 95/123 (77%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+IL+G +S IR LK +V +LKE++P F P LAI+QVG R+DSN+YI +K+KAA+EI
Sbjct: 3 AEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEI 62
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
GI A H+KLPR+ TE E++ + LNED +VHG +VQ+PLDS+N IN V ++++PEKD
Sbjct: 63 GIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKD 122
Query: 130 VDG 132
VDG
Sbjct: 123 VDG 125
>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 115 bits (290), Expect = 1e-33
Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
+ + + V+ + V++ K+ P L + +Y K ++ +
Sbjct: 3 GRTILASKVAETFNTEIINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESM 62
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G + L + + N D SV+GI+V P+ + + V EKD
Sbjct: 63 GFRYDL---RVIEDKDFLEEAIIQANGDDSVNGIMVYFPV--FGNAQDQYLQQVVCKEKD 117
Query: 130 VDGLNTINEGRVAIGDMNGFIPCTPNGVL 158
V+GLN + + + +
Sbjct: 118 VEGLNHVYYQNLYHN-VRYLDKENRLKSI 145
>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate
dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
562]}
Length = 121
Score = 94.7 bits (235), Expect = 7e-26
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 10 AQILSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGGREDSNVYIRMKMKAAKEI 69
A+I+ G ++ +R + ++V+ PGLA+V VG S +Y+ K KA +E+
Sbjct: 2 AKIIDGKTIAQQVRSEVAQKVQARIAA-GLRAPGLAVVLVGSNPASQIYVASKRKACEEV 60
Query: 70 GIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKD 129
G ++ LP + +E ELL + LN D ++ GI+VQ+PL + I+ + V + + P+KD
Sbjct: 61 GFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPA--GIDNVKVLERIHPDKD 118
Query: 130 VDG 132
VDG
Sbjct: 119 VDG 121
>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 170
Score = 75.9 bits (186), Expect = 4e-18
Identities = 50/80 (62%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query: 133 LNTINEGRVAIGDMN-GFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLK 191
L +IN GR+A GD+N FIPCTP G LELIK T V IAG +AVV+GRSKIVG P +LL
Sbjct: 1 LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLL 60
Query: 192 WKHATVTVCHSKTKNIQDVV 211
W +ATVT CHSKT ++ + V
Sbjct: 61 WNNATVTTCHSKTAHLDEEV 80
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 171
Score = 71.3 bits (174), Expect = 3e-16
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 151 PCTPNGVLELIKRTNVT---------IAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCH 201
PCTP ++++++ + + G +V+ RS+IVG P A LL ATV
Sbjct: 1 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD 60
Query: 202 SKTKN 206
Sbjct: 61 VNNIQ 65
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate
dehydrogenase/cyclohydrolase {Escherichia coli [TaxId:
562]}
Length = 166
Score = 61.6 bits (149), Expect = 1e-12
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 136 INEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHA 195
N GR+ PCTP G++ L++R N+ G NAVV+G S IVG P + L
Sbjct: 4 YNVGRLCQRA-PRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC 62
Query: 196 TVTVCHSKTKNIQDVV 211
T TV H TKN++ V
Sbjct: 63 TTTVTHRFTKNLRHHV 78
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 28.7 bits (64), Expect = 0.38
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 152 CTPNGVLELIKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSK 203
+++ IKR T+V IAG AVV G + G A+ L+ A V +
Sbjct: 5 GCRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQALRGFGARVIITEID 56
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 27.5 bits (61), Expect = 0.87
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 161 IKR-TNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVC 200
+ R T+ I+G V+ G VG A +K A V +
Sbjct: 13 LMRATDFLISGKIVVICGYGD-VGKGCASSMKGLGARVYIT 52
>d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase
{Thermotoga maritima [TaxId: 2336]}
Length = 296
Score = 27.7 bits (60), Expect = 0.99
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 13 LSGTAVSGDIREGLKERVKKLKERLPDFEPGLAIVQVGG 51
L G ++ GL ER+ L +L + + +GG
Sbjct: 13 LYHKRPMGKVKPGL-ERISMLLSKLGNPHLEYKTIHIGG 50
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
reductase subunit alpha, DsrA {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 185
Score = 26.6 bits (58), Expect = 2.0
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 1 MAESAVQQQAQILSGTAVSGDIREGLKERVKKLKERLPDFE----PGLAIVQVGGREDSN 56
A + A IL G + E ++ AI E
Sbjct: 66 FAIIGTWRGATILIGGKAPFVEGAVIGWVAVPFVEVEKPYDEIKEILEAIWDWWDEEGKF 125
Query: 57 ------VYIRMKMKAAKE-IGIDA--QHVKLPRS 81
+ R M+ + IG +A + VK PR+
Sbjct: 126 RERIGELIWRKGMREFLKVIGREADVRMVKAPRN 159
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 25.1 bits (54), Expect = 6.7
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 156 GVLELIK-----RTNVTIAGTNAVVLGRSKIVGTPAAELLKWKHATVTVCHSKTKNIQDV 210
GV E +K R ++ G +V G VG A L A + V + T+ +
Sbjct: 8 GVFEAMKATVAHRGLGSLDGLTVLVQGLGA-VGGSLASLAAEAGAQLLVADTDTERVAHA 66
Query: 211 VKSPM 215
V
Sbjct: 67 VALGH 71
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 24.6 bits (53), Expect = 7.7
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 31 KKLKERLPDFEPGLAIVQVGGREDSNVYIR 60
+ ++ LP+F PG V+V + R
Sbjct: 13 RYVRTDLPEFRPG-DTVRVSYKVKEGNRTR 41
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 219
Score = 24.8 bits (53), Expect = 7.9
Identities = 28/209 (13%), Positives = 69/209 (33%), Gaps = 14/209 (6%)
Query: 13 LSGTAVSGDIREGLKERVKKLKERLPDF-EPGLAIVQVGGREDSNVYIRMKMKAAKEIGI 71
L G+ +S + E++++ + + + V VGG + + YI+ +
Sbjct: 7 LGGSVLSNE-----SEKIREFAKTIESVAQQNQVFVVVGGGKLAREYIKSARELGASETF 61
Query: 72 DAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSVSPEKDVD 131
+ + L+S + + V + + + + +
Sbjct: 62 CDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLYRVVVMGGTFPGHTTDATAA 121
Query: 132 GLNTINEGRVAIG--DMNGFIPCTPNGVLELIKRTNVT------IAGTNAVVLGRSKIVG 183
L + V I +++G P +K ++ I ++ G + ++
Sbjct: 122 LLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVID 181
Query: 184 TPAAELLKWKHATVTVCHSKTKNIQDVVK 212
AA++++ V +NI VK
Sbjct: 182 LLAAKIIERSKIKTYVILGTPENIMKAVK 210
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 24.9 bits (54), Expect = 8.7
Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 26/150 (17%)
Query: 66 AKEIGIDAQHVKLPRSITEIELLSRLKKLNEDPSVHGIIVQMPLDSDNDINAMLVTDSV- 124
A+++G+D ++ + T + L L +V ++V DSV
Sbjct: 99 ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV----------------DVIVVDSVA 142
Query: 125 --SPEKDVDGLNTINEGRVAIGDMNGFIPCTPNGVLELIKRTNVTIAGTNAVVLGRSKIV 182
+P+ +++G + +A M+ + +K++N + N + + +
Sbjct: 143 ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG----NLKQSNTLLIFINQIRMKIGVMF 198
Query: 183 G---TPAAELLKWKHATVTVCHSKTKNIQD 209
G T +A+V + + +++
Sbjct: 199 GNPETTTGGNALKFYASVRLDIRRIGAVKE 228
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.133 0.367
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 772,338
Number of extensions: 36336
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 18
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)