BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7982
         (72 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q04982|BRAF_CHICK Serine/threonine-protein kinase B-raf OS=Gallus gallus GN=BRAF PE=1
           SV=1
          Length = 806

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 3   DELDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIE 59
           +E+ NI+ +I LT+E+IEAL  KF     PPSIYLE Y E TSKL  L+ RE +L+E
Sbjct: 45  EEVWNIKQMIKLTQEHIEALLDKFGGEHNPPSIYLEAYEEYTSKLDALQQREQQLLE 101


>sp|P34908|BRAF_COTJA Serine/threonine-protein kinase B-raf OS=Coturnix coturnix japonica
           GN=BRAF PE=2 SV=1
          Length = 807

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 3   DELDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIE 59
           +E+ NI+ +I LT+E+IEAL  KF     PPSIYLE Y E TSKL  L+ RE +L+E
Sbjct: 45  EEVWNIKQMIKLTQEHIEALLDKFGGEHNPPSIYLEAYEEYTSKLDALQQREQQLLE 101


>sp|P15056|BRAF_HUMAN Serine/threonine-protein kinase B-raf OS=Homo sapiens GN=BRAF PE=1
           SV=4
          Length = 766

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 3   DELDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIE 59
           +E+ NI+ +I LT+E+IEAL  KF     PPSIYLE Y E TSKL  L+ RE +L+E
Sbjct: 45  EEVWNIKQMIKLTQEHIEALLDKFGGEHNPPSIYLEAYEEYTSKLDALQQREQQLLE 101


>sp|P28028|BRAF_MOUSE Serine/threonine-protein kinase B-raf OS=Mus musculus GN=Braf PE=1
           SV=3
          Length = 804

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 3   DELDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIE 59
           +E+ NI+ +I LT+E+IEAL  KF     PPSIYLE Y E TSKL  L+ RE +L+E
Sbjct: 62  EEVWNIKQMIKLTQEHIEALLDKFGGEHNPPSIYLEAYEEYTSKLDALQQREQQLLE 118


>sp|P11346|KRAF1_DROME Raf homolog serine/threonine-protein kinase phl OS=Drosophila
           melanogaster GN=phl PE=1 SV=5
          Length = 782

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 49/102 (48%), Gaps = 43/102 (42%)

Query: 1   MCDELDNIQSVICLTRENIEALNSKFAAYQEPPSIYL----------------------- 37
           + +EL N+Q V  +TRENI+ALN+KFA  QEPP++YL                       
Sbjct: 17  LAEELHNVQLVKHVTRENIDALNAKFANLQEPPAMYLIGESSKAELNTTWVLGNPTPTSK 76

Query: 38  --------------------EEYAELTSKLHELEAREAKLIE 59
                                EY ELTSKLHELEA+E +L+E
Sbjct: 77  LFIKYPTYVYVCISRLWFLPTEYQELTSKLHELEAKEQELME 118


>sp|P36621|CAP_SCHPO Adenylyl cyclase-associated protein OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=cap1 PE=1 SV=1
          Length = 551

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 27/42 (64%)

Query: 19  IEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEE 60
           +EA+ +  +AY E  S YL +Y EL+ K+  L A +++ +E+
Sbjct: 99  VEAVPASISAYDEFCSKYLSKYMELSKKIGGLIAEQSEHVEK 140


>sp|B3PGQ8|DNLJ_CELJU DNA ligase OS=Cellvibrio japonicus (strain Ueda107) GN=ligA PE=3
          SV=1
          Length = 680

 Score = 29.6 bits (65), Expect = 6.2,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 5  LDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAR 53
           D++ + I   RE I   N ++ A  EP  I   EY  L  +L ELEA+
Sbjct: 7  FDDVSAEIAQLREQIRYHNYRYYALDEP-QIPDAEYDRLMQRLRELEAQ 54


>sp|Q9ULM3|YETS2_HUMAN YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1
          SV=2
          Length = 1422

 Score = 29.3 bits (64), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 23 NSKFAAYQEPPSIYLEEYA-ELTSKLHELEAREAKLIEERECVKK 66
          +++ AA Q+  +I  E++A E+ +K HE+E  + +LIE R  + K
Sbjct: 33 SARDAAVQKIETIIKEQFALEMKNKEHEIEVIDQRLIEARRMMDK 77


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,773,600
Number of Sequences: 539616
Number of extensions: 720836
Number of successful extensions: 3066
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3041
Number of HSP's gapped (non-prelim): 33
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)