Query psy7982
Match_columns 72
No_of_seqs 22 out of 24
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 23:48:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lw1_A ABC transporter ATP-bin 79.6 7.9 0.00027 23.3 6.4 54 3-60 22-78 (89)
2 1z21_A YOP proteins translocat 75.3 2.6 8.8E-05 28.5 3.2 53 14-66 31-86 (112)
3 3a7o_A Autophagy protein 16; c 66.1 7.2 0.00024 24.7 3.6 25 2-26 31-55 (75)
4 2w6a_A ARF GTPase-activating p 59.1 20 0.00068 22.0 4.6 32 35-66 10-41 (63)
5 2akf_A Coronin-1A; coiled coil 57.4 15 0.00052 19.9 3.4 24 2-25 5-28 (32)
6 1gk7_A Vimentin; intermediate 51.3 16 0.00056 19.8 3.0 13 16-28 5-17 (39)
7 3oa7_A Head morphogenesis prot 45.8 36 0.0012 24.8 4.9 40 18-64 31-70 (206)
8 2j8p_A Cleavage stimulation fa 37.1 8.1 0.00028 22.3 0.2 17 6-22 11-27 (49)
9 2plg_A TLL0839 protein; hypoth 36.7 39 0.0013 23.1 3.7 26 6-31 133-158 (163)
10 2ieq_A S glycoprotein, spike g 36.1 20 0.00067 24.0 2.0 58 5-62 31-93 (109)
11 3a7p_A Autophagy protein 16; c 36.1 1.1E+02 0.0036 21.2 6.6 54 2-62 81-134 (152)
12 2c0s_A Conserved domain protei 36.1 66 0.0023 18.9 5.6 45 5-56 3-47 (64)
13 1k1f_A Breakpoint cluster regi 35.8 52 0.0018 20.6 3.8 43 18-61 7-49 (72)
14 1sfc_A VAMP 2, protein (synapt 35.5 78 0.0027 19.5 6.6 38 7-62 38-75 (96)
15 3dd4_A KV channel-interacting 35.1 87 0.003 19.9 5.5 42 3-44 50-91 (229)
16 2bzb_A Conserved domain protei 33.6 46 0.0016 19.4 3.2 31 5-36 3-33 (62)
17 3oja_A Leucine-rich immune mol 33.6 77 0.0026 22.9 5.0 24 4-27 429-452 (487)
18 1bm4_A Protein (moloney murine 31.8 11 0.00036 20.5 0.1 12 28-39 10-21 (32)
19 2dpr_A CON-T(K7GLA); conantoxi 31.2 47 0.0016 17.2 2.6 16 38-53 3-18 (26)
20 1l4a_A Synaptobrevin; snare, s 30.6 85 0.0029 18.5 4.3 18 8-25 24-41 (80)
21 3hhm_B NISH2 P85alpha; PI3KCA, 29.2 1.8E+02 0.0061 21.7 9.1 42 25-66 190-233 (373)
22 3ljm_A Coil Ser L9C; de novo d 28.6 48 0.0016 17.7 2.4 13 43-55 13-25 (31)
23 1x0h_A P195, RAS GTPase-activa 28.2 30 0.001 22.1 1.8 16 19-34 96-111 (112)
24 3twe_A Alpha4H; unknown functi 28.1 70 0.0024 16.6 3.3 20 42-61 5-24 (27)
25 2yru_A Steroid receptor RNA ac 25.9 71 0.0024 20.5 3.4 25 44-68 34-59 (118)
26 2inr_A DNA topoisomerase 4 sub 25.1 1.3E+02 0.0044 24.1 5.3 57 5-62 406-478 (514)
27 2l5g_B Putative uncharacterize 24.6 1E+02 0.0035 17.4 3.6 23 39-61 17-39 (42)
28 3va9_A Sensor histidine kinase 24.6 1.3E+02 0.0046 18.7 4.9 27 40-66 122-148 (164)
29 4dzo_A Mitotic spindle assembl 23.9 1.1E+02 0.0038 19.7 4.0 26 38-63 4-29 (123)
30 2w84_A Peroxisomal membrane pr 23.1 48 0.0016 20.3 2.0 22 13-34 46-67 (70)
31 1s6c_A KV4 potassium channel-i 22.3 59 0.002 19.2 2.3 44 3-46 4-47 (183)
32 3ilw_A DNA gyrase subunit A; D 22.1 2.5E+02 0.0085 22.2 6.4 23 5-27 368-396 (470)
33 2nps_A VAMP-4, vesicle-associa 20.1 1.4E+02 0.0047 17.2 6.3 37 8-62 17-53 (74)
34 2lpe_A Kinase suppressor of RA 20.1 40 0.0014 23.3 1.3 23 7-29 20-42 (149)
No 1
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=79.57 E-value=7.9 Score=23.30 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhhHHhHHHHHHHhcccCCCchhhH---HHHHHHHHhHHHHHHHHHHHHHH
Q psy7982 3 DELDNIQSVICLTRENIEALNSKFAAYQEPPSIYL---EEYAELTSKLHELEAREAKLIEE 60 (72)
Q Consensus 3 eel~NI~~vI~LTrenIdaLn~kF~~~q~PPsIYL---~EY~ElTsKL~~le~re~~L~E~ 60 (72)
-||..|..-|.-...-|.+|.+++++ |.+|- ...++++.+|.+++.....+++.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad----p~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD----ASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS----TTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC----cccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888889999999987 44443 34455555555555555555544
No 2
>1z21_A YOP proteins translocation protein H; plague, type III secretion, YOPR, cell invasion; 1.50A {Yersinia pestis} SCOP: a.243.1.2
Probab=75.28 E-value=2.6 Score=28.49 Aligned_cols=53 Identities=28% Similarity=0.350 Sum_probs=37.1
Q ss_pred hhHHhHHHHHHHhcccCCC--chhhHHHHHHHHHhHHHH-HHHHHHHHHHHHhhhh
Q psy7982 14 LTRENIEALNSKFAAYQEP--PSIYLEEYAELTSKLHEL-EAREAKLIEERECVKK 66 (72)
Q Consensus 14 LTrenIdaLn~kF~~~q~P--PsIYL~EY~ElTsKL~~l-e~re~~L~E~~~~~~~ 66 (72)
|..-==|+|.++|||.|-| |+|=+-|-+-+--..+-+ ..+|.-|+.+++.-+.
T Consensus 31 L~~PV~e~L~arFgg~q~pV~~aiD~pELRa~~ReFdPlg~r~EtvLL~vL~~ik~ 86 (112)
T 1z21_A 31 LATPVREALLARFGQHQGSVVPAIDLPELRSVLQQFDSFGKRWEAILLQVLEGIKP 86 (112)
T ss_dssp HHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhccccCCCCcccccHHHHHHHHHhCcchhHHHHHHHHHHHHccc
Confidence 3444458999999999999 999888766665444443 3556678888886554
No 3
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=66.06 E-value=7.2 Score=24.74 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhhHHhHHHHHHHh
Q psy7982 2 CDELDNIQSVICLTRENIEALNSKF 26 (72)
Q Consensus 2 ~eel~NI~~vI~LTrenIdaLn~kF 26 (72)
+.||+-++.+|+|.-.|.+.||+..
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEi 55 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDEL 55 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHH
Confidence 4689999999999999999999975
No 4
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=59.13 E-value=20 Score=22.03 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy7982 35 IYLEEYAELTSKLHELEAREAKLIEERECVKK 66 (72)
Q Consensus 35 IYL~EY~ElTsKL~~le~re~~L~E~~~~~~~ 66 (72)
|-++||-|+..-|..-++|-|+|+.+-++..+
T Consensus 10 it~qeylevK~ALaaSeAkiQQLmkVN~~ls~ 41 (63)
T 2w6a_A 10 VTLQEYLELKKALATSEAKVQQLMKVNSSLSD 41 (63)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHhHhhhH
Confidence 88999999999999999999999987665544
No 5
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=57.42 E-value=15 Score=19.95 Aligned_cols=24 Identities=13% Similarity=0.393 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHhhHHhHHHHHHH
Q psy7982 2 CDELDNIQSVICLTRENIEALNSK 25 (72)
Q Consensus 2 ~eel~NI~~vI~LTrenIdaLn~k 25 (72)
+||++|++.|..=-++-+|+|-+.
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888887777777777553
No 6
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=51.33 E-value=16 Score=19.82 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=11.0
Q ss_pred HHhHHHHHHHhcc
Q psy7982 16 RENIEALNSKFAA 28 (72)
Q Consensus 16 renIdaLn~kF~~ 28 (72)
|+-+..||++||+
T Consensus 5 Ke~mq~LNdrlAs 17 (39)
T 1gk7_A 5 KVELQELNDRFAN 17 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678899999986
No 7
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=45.79 E-value=36 Score=24.83 Aligned_cols=40 Identities=18% Similarity=0.349 Sum_probs=30.4
Q ss_pred hHHHHHHHhcccCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy7982 18 NIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEERECV 64 (72)
Q Consensus 18 nIdaLn~kF~~~q~PPsIYL~EY~ElTsKL~~le~re~~L~E~~~~~ 64 (72)
-+..|-+.++. ++.||++||++-+++++..-+|-..++..
T Consensus 31 ~~~~~~a~~~s-------~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 31 ALQQLRVNYGS-------FVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34455555653 57899999999999999888888777643
No 8
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=37.11 E-value=8.1 Score=22.32 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=13.6
Q ss_pred HHHHHHHHhhHHhHHHH
Q psy7982 6 DNIQSVICLTRENIEAL 22 (72)
Q Consensus 6 ~NI~~vI~LTrenIdaL 22 (72)
.=|.+|+.||.+-|++|
T Consensus 11 ~Li~QVLsLt~eQI~~L 27 (49)
T 2j8p_A 11 ALIMQVLQLTADQIAML 27 (49)
T ss_dssp HHHHHHHTSCHHHHHTS
T ss_pred HHHHHHHhCCHHHHHhC
Confidence 44889999999888764
No 9
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=36.65 E-value=39 Score=23.14 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=20.3
Q ss_pred HHHHHHHHhhHHhHHHHHHHhcccCC
Q psy7982 6 DNIQSVICLTRENIEALNSKFAAYQE 31 (72)
Q Consensus 6 ~NI~~vI~LTrenIdaLn~kF~~~q~ 31 (72)
+-|..|..+-.++=|.|-++||+.-|
T Consensus 133 ~aIt~V~~lAD~~Dd~L~~~fg~~~~ 158 (163)
T 2plg_A 133 RLITIVATLADDYDDALRAEFKGEGH 158 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 45889999999999999999999866
No 10
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=36.14 E-value=20 Score=23.96 Aligned_cols=58 Identities=26% Similarity=0.322 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhHHhHHHHHHHhcccCCCchhhH-----HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7982 5 LDNIQSVICLTRENIEALNSKFAAYQEPPSIYL-----EEYAELTSKLHELEAREAKLIEERE 62 (72)
Q Consensus 5 l~NI~~vI~LTrenIdaLn~kF~~~q~PPsIYL-----~EY~ElTsKL~~le~re~~L~E~~~ 62 (72)
+..||.|++=--.=|-.|..+++.----||.=| .-|-++|++|+.||+|-+.|.-.-.
T Consensus 31 l~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~~~ 93 (109)
T 2ieq_A 31 LNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQTTV 93 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665422223333333332222344433 3466999999999999888765433
No 11
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.11 E-value=1.1e+02 Score=21.20 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhhHHhHHHHHHHhcccCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7982 2 CDELDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEERE 62 (72)
Q Consensus 2 ~eel~NI~~vI~LTrenIdaLn~kF~~~q~PPsIYL~EY~ElTsKL~~le~re~~L~E~~~ 62 (72)
+..|...+..|+.....++.|++.....+ .++.-+..|+..|+..-..|++..=
T Consensus 81 ~~ki~dLeeel~eK~K~~e~l~DEl~aLq-------lq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 81 EQEIRRLKEVIALKNKNTERLNAALISGT-------IENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777788888887765432 4577888888888888777777643
No 12
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=36.06 E-value=66 Score=18.86 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhHHhHHHHHHHhcccCCCchhhHHHHHHHHHhHHHHHHHHHH
Q psy7982 5 LDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAK 56 (72)
Q Consensus 5 l~NI~~vI~LTrenIdaLn~kF~~~q~PPsIYL~EY~ElTsKL~~le~re~~ 56 (72)
+..+...|.-+|+.+-.|-.++ |+.+|-.|- ++..||.|=.....
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~-Gl~~~~vI~------~SQeLD~LIn~Y~k 47 (64)
T 2c0s_A 3 VTKLNDRIEAKKKELIYLVEKY-GFTHHKVIS------FSQELDRLLNLLIE 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-CTTSHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHH------HHHHHHHHHHHHHH
Confidence 4678889999999999999987 799998774 34455555444443
No 13
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=35.78 E-value=52 Score=20.57 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=27.3
Q ss_pred hHHHHHHHhcccCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy7982 18 NIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEER 61 (72)
Q Consensus 18 nIdaLn~kF~~~q~PPsIYL~EY~ElTsKL~~le~re~~L~E~~ 61 (72)
=++|..++|.+.. ||.+=|.--.++...|..-+..-..|-..+
T Consensus 7 f~eaW~aqfp~~e-pp~m~l~~vgdiEqeLe~Ck~sIrrLE~ev 49 (72)
T 1k1f_A 7 FAEAWKAQFPDSE-PPRMELRSVGDIEQELERAKASIRRLEQEV 49 (72)
T ss_dssp HHHHHHHHCTTSC-CCCCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCC-CcHhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999865 887877555555555555444444443333
No 14
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=35.54 E-value=78 Score=19.48 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=27.5
Q ss_pred HHHHHHHhhHHhHHHHHHHhcccCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7982 7 NIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEERE 62 (72)
Q Consensus 7 NI~~vI~LTrenIdaLn~kF~~~q~PPsIYL~EY~ElTsKL~~le~re~~L~E~~~ 62 (72)
.|..|..+-.+||+.+.++ -.||+.|..+-..|...-.
T Consensus 38 eldeVk~IM~~NI~kvLeR------------------GEkLd~L~dkse~L~~~S~ 75 (96)
T 1sfc_A 38 QVDEVVDIMRVNVDKVLER------------------DQKLSELDDRADALQAGAS 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHHHHHHH
Confidence 3556666778999999988 5677777777777765544
No 15
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=35.13 E-value=87 Score=19.93 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhhHHhHHHHHHHhcccCCCchhhHHHHHHHH
Q psy7982 3 DELDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELT 44 (72)
Q Consensus 3 eel~NI~~vI~LTrenIdaLn~kF~~~q~PPsIYL~EY~ElT 44 (72)
+++..+.....+|++.|..|-..|....+--.|=.+|+..+-
T Consensus 50 ~~l~~l~~~~~~s~~ei~~l~~~F~~~d~~G~Is~~ef~~~l 91 (229)
T 3dd4_A 50 EALELLEAQSKFTKKELQILYRGFKNECPSGVVNEETFKEIY 91 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHH
Confidence 678888888999999999999999765544556556655543
No 16
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=33.61 E-value=46 Score=19.45 Aligned_cols=31 Identities=6% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHHhHHHHHHHhcccCCCchhh
Q psy7982 5 LDNIQSVICLTRENIEALNSKFAAYQEPPSIY 36 (72)
Q Consensus 5 l~NI~~vI~LTrenIdaLn~kF~~~q~PPsIY 36 (72)
+..+...|.-.|+.+-.|-.++ |+.+|-.|-
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~-Gl~~~~vI~ 33 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARH-GLDHDKVLL 33 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCHHHHH
Confidence 4678888999999999998888 689988764
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.61 E-value=77 Score=22.89 Aligned_cols=24 Identities=13% Similarity=-0.043 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhHHhHHHHHHHhc
Q psy7982 4 ELDNIQSVICLTRENIEALNSKFA 27 (72)
Q Consensus 4 el~NI~~vI~LTrenIdaLn~kF~ 27 (72)
|..++++-.+.+++=|+.|-++++
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~ 452 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENA 452 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhh
Confidence 333444444455544444444443
No 18
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=31.76 E-value=11 Score=20.53 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=9.1
Q ss_pred ccCCCchhhHHH
Q psy7982 28 AYQEPPSIYLEE 39 (72)
Q Consensus 28 ~~q~PPsIYL~E 39 (72)
|...|||-||+.
T Consensus 10 g~~EsPs~Fler 21 (32)
T 1bm4_A 10 GPNESPSAFLER 21 (32)
T ss_dssp TGGGHHHHHHHH
T ss_pred CCCCChHHHHHH
Confidence 556789999954
No 19
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=31.15 E-value=47 Score=17.18 Aligned_cols=16 Identities=44% Similarity=0.715 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHHH
Q psy7982 38 EEYAELTSKLHELEAR 53 (72)
Q Consensus 38 ~EY~ElTsKL~~le~r 53 (72)
+||||+-..|.+-+-+
T Consensus 3 eeyqemlenlreaevk 18 (26)
T 2dpr_A 3 EEYQEMLENLREAEVK 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899887777665543
No 20
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=30.59 E-value=85 Score=18.46 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=13.1
Q ss_pred HHHHHHhhHHhHHHHHHH
Q psy7982 8 IQSVICLTRENIEALNSK 25 (72)
Q Consensus 8 I~~vI~LTrenIdaLn~k 25 (72)
|..|..+-.+||+.+.++
T Consensus 24 l~ev~~iM~~NI~~vLeR 41 (80)
T 1l4a_A 24 VEEVVDIMRVNVDKVLER 41 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566667888888877
No 21
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=29.21 E-value=1.8e+02 Score=21.74 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=30.9
Q ss_pred HhcccCCCch--hhHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy7982 25 KFAAYQEPPS--IYLEEYAELTSKLHELEAREAKLIEERECVKK 66 (72)
Q Consensus 25 kF~~~q~PPs--IYL~EY~ElTsKL~~le~re~~L~E~~~~~~~ 66 (72)
+|..+.+|-. .-++-|+-|.++|.++...-++|-+.+...+.
T Consensus 190 ~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~ 233 (373)
T 3hhm_B 190 KFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAA 233 (373)
T ss_dssp HHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667766654 34677999999999998877777777765544
No 22
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=28.63 E-value=48 Score=17.73 Aligned_cols=13 Identities=46% Similarity=0.555 Sum_probs=7.4
Q ss_pred HHHhHHHHHHHHH
Q psy7982 43 LTSKLHELEAREA 55 (72)
Q Consensus 43 lTsKL~~le~re~ 55 (72)
|.|||..|+++..
T Consensus 13 lesklqalekkle 25 (31)
T 3ljm_A 13 LESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666665543
No 23
>1x0h_A P195, RAS GTPase-activating-like protein iqgap1; cell adhesion, beta-sandwich, protein-protein interaction, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.332.1.1
Probab=28.17 E-value=30 Score=22.15 Aligned_cols=16 Identities=44% Similarity=0.476 Sum_probs=12.8
Q ss_pred HHHHHHHhcccCCCch
Q psy7982 19 IEALNSKFAAYQEPPS 34 (72)
Q Consensus 19 IdaLn~kF~~~q~PPs 34 (72)
|.-||.||-+.|.|.|
T Consensus 96 l~LlnkkFy~k~~~~~ 111 (112)
T 1x0h_A 96 IFLLNKKFYGKSGPSS 111 (112)
T ss_dssp HHHHHHTTCCCCSCCC
T ss_pred HHHHHHHhcccCCCCC
Confidence 3449999999999875
No 24
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=28.12 E-value=70 Score=16.64 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHhHHHHHHHHHHHHHHH
Q psy7982 42 ELTSKLHELEAREAKLIEER 61 (72)
Q Consensus 42 ElTsKL~~le~re~~L~E~~ 61 (72)
||-..|.+||.|..+|...+
T Consensus 5 elykeledlqerlrklrkkl 24 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777766544
No 25
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.89 E-value=71 Score=20.51 Aligned_cols=25 Identities=24% Similarity=0.114 Sum_probs=20.7
Q ss_pred HHh-HHHHHHHHHHHHHHHHhhhhhh
Q psy7982 44 TSK-LHELEAREAKLIEERECVKKSN 68 (72)
Q Consensus 44 TsK-L~~le~re~~L~E~~~~~~~~~ 68 (72)
+.+ +++.++|..-|++.++++..|+
T Consensus 34 ~k~~~~D~~KRL~~LfdkLn~~~Ls~ 59 (118)
T 2yru_A 34 KKQVCDDISRRLALLREQWAGGKLSI 59 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 445 8999999999999999887643
No 26
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=25.11 E-value=1.3e+02 Score=24.06 Aligned_cols=57 Identities=25% Similarity=0.289 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhH------HhHHHHHHHhcccCCCchhhH----------HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7982 5 LDNIQSVICLTR------ENIEALNSKFAAYQEPPSIYL----------EEYAELTSKLHELEAREAKLIEERE 62 (72)
Q Consensus 5 l~NI~~vI~LTr------enIdaLn~kF~~~q~PPsIYL----------~EY~ElTsKL~~le~re~~L~E~~~ 62 (72)
+.||..||.+-+ +=.+.|.++|+ +...-+=|| .+..++...+.+++++-..|.+.++
T Consensus 406 ~~~id~vI~iIr~s~~~~~a~~~L~~~f~-lse~qa~~IL~m~L~rLT~~e~~kl~~E~~~l~~ei~~l~~iL~ 478 (514)
T 2inr_A 406 LSILDKVIELIRSSKNKRDAKENLIEVYE-FTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILD 478 (514)
T ss_dssp HHSHHHHHHHHHHCCSHHHHHHHHHTTSS-CCHHHHHHHHTCCGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcC-CCHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457888888733 33556888775 333223333 3445555555555555555544444
No 27
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.64 E-value=1e+02 Score=17.40 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=18.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q psy7982 39 EYAELTSKLHELEAREAKLIEER 61 (72)
Q Consensus 39 EY~ElTsKL~~le~re~~L~E~~ 61 (72)
|+..-..|+.+||.|...|-+.-
T Consensus 17 EI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 17 EITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677789999999998887753
No 28
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=24.59 E-value=1.3e+02 Score=18.74 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=18.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy7982 40 YAELTSKLHELEAREAKLIEERECVKK 66 (72)
Q Consensus 40 Y~ElTsKL~~le~re~~L~E~~~~~~~ 66 (72)
...+...+.++...|+.|+..+....+
T Consensus 122 md~iR~~~~~~~~~E~~lL~~R~~~~~ 148 (164)
T 3va9_A 122 TERIETSLSVLTRAEQALLIQRLSKHD 148 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777889999999999998876554
No 29
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=23.90 E-value=1.1e+02 Score=19.70 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy7982 38 EEYAELTSKLHELEAREAKLIEEREC 63 (72)
Q Consensus 38 ~EY~ElTsKL~~le~re~~L~E~~~~ 63 (72)
.|..+|..++..+++|.+.|.|.-..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ 29 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQT 29 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999998763
No 30
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=23.05 E-value=48 Score=20.35 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=17.5
Q ss_pred HhhHHhHHHHHHHhcccCCCch
Q psy7982 13 CLTRENIEALNSKFAAYQEPPS 34 (72)
Q Consensus 13 ~LTrenIdaLn~kF~~~q~PPs 34 (72)
.||.+-|+.+..+-|....+|+
T Consensus 46 GLt~eEI~~Al~ra~~~~~~p~ 67 (70)
T 2w84_A 46 GLTDEEIDMAFQQSGTAADEPS 67 (70)
T ss_dssp TCCHHHHHHHHHHHTCCCCC--
T ss_pred CCCHHHHHHHHHHccCCCCCCc
Confidence 4899999999999888777773
No 31
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=22.30 E-value=59 Score=19.15 Aligned_cols=44 Identities=11% Similarity=0.294 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhhHHhHHHHHHHhcccCCCchhhHHHHHHHHHh
Q psy7982 3 DELDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSK 46 (72)
Q Consensus 3 eel~NI~~vI~LTrenIdaLn~kF~~~q~PPsIYL~EY~ElTsK 46 (72)
+|+.++.....+|++-|..+-+.|....+--.|=..|+..+-..
T Consensus 4 ~el~~l~~~~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~ 47 (183)
T 1s6c_A 4 EGLEQLEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQ 47 (183)
T ss_dssp --CHHHHHHSSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 56777777777888888888888876433344555555555433
No 32
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=22.07 E-value=2.5e+02 Score=22.23 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhHHh------HHHHHHHhc
Q psy7982 5 LDNIQSVICLTREN------IEALNSKFA 27 (72)
Q Consensus 5 l~NI~~vI~LTren------IdaLn~kF~ 27 (72)
+.||..||.+-|.+ ...|.++|+
T Consensus 368 ~~~iD~vI~iIr~s~~~~~a~~~L~~~f~ 396 (470)
T 3ilw_A 368 LDALDEVIALIRASETVDIARAGLIELLD 396 (470)
T ss_dssp HHTHHHHHHHHHHCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 56788888876665 567888885
No 33
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=20.05 E-value=1.4e+02 Score=17.20 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=25.3
Q ss_pred HHHHHHhhHHhHHHHHHHhcccCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy7982 8 IQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEERE 62 (72)
Q Consensus 8 I~~vI~LTrenIdaLn~kF~~~q~PPsIYL~EY~ElTsKL~~le~re~~L~E~~~ 62 (72)
|..|..+-.+||+.+.++ -.||+.|..+-..|...-.
T Consensus 17 l~ev~~iM~~NI~~vL~R------------------gekLd~L~~ks~~L~~~s~ 53 (74)
T 2nps_A 17 VDEVIDVMQENITKVIER------------------GERLDELQDKSESLSDNAT 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------------------hhHHHHHHHHHHHHHHHHH
Confidence 445555668999999988 4567777776666655433
No 34
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=20.05 E-value=40 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.8
Q ss_pred HHHHHHHhhHHhHHHHHHHhccc
Q psy7982 7 NIQSVICLTRENIEALNSKFAAY 29 (72)
Q Consensus 7 NI~~vI~LTrenIdaLn~kF~~~ 29 (72)
-||.||.++-+|++-|-.+-|.-
T Consensus 20 ~iQ~mIdis~~~L~gLRtqCa~S 42 (149)
T 2lpe_A 20 QLQKLIDISIGSLRGLRTKCSVS 42 (149)
T ss_dssp TSCSTTHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHhHHHHHHHHHHHhhh
Confidence 58899999999999999998875
Done!