RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7982
(72 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.037
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 22 LNSKFAAYQEPPSIYLEEYAELTSKLHELEAR----EAKLIEEREC 63
L +F P+ E T+ EL + + L+E +
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPA-ELVGKFLGYVSSLVEPSKV 77
Score = 26.2 bits (57), Expect = 1.1
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 17 ENIEALNSKFAAY---QEPPSIYLEEYAEL--TSK--LHELEAREAKLIEE 60
+ N++ A Q Y EE +L T + +L A+ + E
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 0.61
Identities = 4/30 (13%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 16 RENIEALNSKFAAYQEP---PSIYLEEYAE 42
++ ++ L + Y P++ ++ E
Sbjct: 19 KQALKKLQASLKLY-ADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 0.83
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 16 RENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELE--------AREAKLIEERECVKK 66
R N + L S Q PS+ Y E +L+ +R ++ R+ + +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Score = 25.2 bits (54), Expect = 2.1
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 15 TRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLI 58
R+ + N FA Y L+ Y +L L EL R AK +
Sbjct: 115 QRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLEL--RPAKNV 153
Score = 25.2 bits (54), Expect = 2.4
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 7 NI-QSVICL-----TRENIEALNSKFAAY------QEPPSIYLEE-YAELTSKLHELEAR 53
+I ++ L + ++ + +K Y + +I + Y EL KL A
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 54 EAKLIEERECVKK 66
+++ K
Sbjct: 446 HRSIVDHYNIPKT 458
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 26.0 bits (58), Expect = 1.0
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 14 LTRENIEALNSKFAAYQE----------PPSIYLEEYAELTSKLHELEAR 53
L + L + + PP + LE+ +L S + R
Sbjct: 113 LNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQGIR 162
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 25.6 bits (57), Expect = 1.3
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 25 KFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEERECVKKS 67
+ + S++L + ++ L + + R+ V ++
Sbjct: 769 SHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRA 811
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 25.2 bits (56), Expect = 1.7
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 14 LTRENIEALNSKFAAYQE----------PPSIYLEEYAELTSKLHELEAR 53
+ +E+++AL + ++ P ++ Y +T E A
Sbjct: 108 IKKEHVQALLEQLTELEKGDVLVLAGSVPQAMPQTIYRSMTQIAKERGAF 157
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural
genomics, center for structural genomics of infectious
DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Length = 663
Score = 25.1 bits (56), Expect = 2.0
Identities = 3/25 (12%), Positives = 9/25 (36%), Gaps = 5/25 (20%)
Query: 23 NSKFAAYQEPPSIYLEEYAELTSKL 47
+ +++ P ++ E L
Sbjct: 310 QGQRNLFKDSP-----KFDEFERVL 329
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 24.8 bits (55), Expect = 2.4
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 10/50 (20%)
Query: 14 LTRENIEALNSKFAAYQE----------PPSIYLEEYAELTSKLHELEAR 53
+T E L + P SI + YA++ + A+
Sbjct: 108 ITSTQFEQLLQQIKNTTSEDIVIVAGSVPSSIPSDAYAQIAQITAQTGAK 157
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 24.1 bits (53), Expect = 4.1
Identities = 5/51 (9%), Positives = 12/51 (23%), Gaps = 11/51 (21%)
Query: 14 LTRENIEALNSKFAAYQE-----------PPSIYLEEYAELTSKLHELEAR 53
+ + F E P + + YA++ +
Sbjct: 129 IDNQEAAGFIKHFEQMMEKVEAVAISGSLPKGLNQDYYAQIIERCQNKGVP 179
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily,
salmonella typhimurium LT2; 1.45A {Salmonella
typhimurium} SCOP: d.157.1.2
Length = 258
Score = 24.1 bits (53), Expect = 4.6
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 23 NSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLI-------EEREC 63
N KFA P ++ EY +L R K + ER+
Sbjct: 178 NIKFALSILPHDSFINEYYRKVKEL-----RVKKQMTLPVILKNERKI 220
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 23.6 bits (50), Expect = 6.4
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 16 RENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEERECVKKSNRR 70
+ + + ++ Q P +YL EL + +L+ +E+ C++++ RR
Sbjct: 16 LKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVS---LEKNPCIREARRR 67
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S
iron-sulfur cluster, conserved cysteine, IPP and DMAP
production final STEP; HET: H6P; 1.40A {Escherichia
coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A*
3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Length = 328
Score = 23.7 bits (52), Expect = 7.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 15 TRENIEALNSKFAAYQEPPS 34
T + I+AL +F P
Sbjct: 186 TSDVIDALRKRFPKIVGPRK 205
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase;
monomer: alpha/beta domain, helix bundle, trimer of
dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus
kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A*
3iqe_A* 3iqf_A* 3iqz_A*
Length = 283
Score = 23.4 bits (50), Expect = 7.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 37 LEEYAELTSKLHELEAREAKLIEERECVKKSN 68
E Y + + HE+ + A+L +E ++KSN
Sbjct: 227 KERYVPIVASAHEMMRKAAELADEARELEKSN 258
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 23.5 bits (51), Expect = 7.8
Identities = 5/65 (7%), Positives = 12/65 (18%), Gaps = 1/65 (1%)
Query: 3 DELDNIQSVICLTRENIEALNSKFAAYQEPPSIYLEEYAELTSKLHELEAREAKLIEERE 62
++ S Y E + + +L E +
Sbjct: 194 KSATESIKNRRRIHGELKTYKSPGLEV-LFQGPRGSRYDEAEGRFEVINNETEQLKAEEK 252
Query: 63 CVKKS 67
+
Sbjct: 253 KILNQ 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.351
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,035,905
Number of extensions: 46560
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 29
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)