RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7982
         (72 letters)



>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent
           methylenetetrahydromethanopterin dehydrogenase (MTD)
           {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 282

 Score = 22.9 bits (49), Expect = 4.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 37  LEEYAELTSKLHELEAREAKLIEERECVKKSN 68
            E Y  + +  HE+  + A+L +E   ++KSN
Sbjct: 226 KERYVPIVASAHEMMRKAAELADEARELEKSN 257


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 247,115
Number of extensions: 9021
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 8
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)