BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7983
(184 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|405970039|gb|EKC34976.1| DNA damage-binding protein 1 [Crassostrea gigas]
Length = 1160
Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQ+ E YSFL D+Q RLA+ I+SVG+IEHSFWRSF+T+ K++ACEGFIDGDLIE
Sbjct: 1056 AVGLVTQVPQEFYSFLQDIQSRLAKVIKSVGKIEHSFWRSFHTERKTEACEGFIDGDLIE 1115
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDLN M+ GLQI GS KR+ATVDD++K +E+LTRIH
Sbjct: 1116 SFLDLNRDKMQETVKGLQID-DGSGMKREATVDDLVKTIEELTRIH 1160
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 51/57 (89%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALA D T T GTIDEIQKLHIRT+PLGE+PRRIAYQESSQTFGVI+ R+D+Q+++
Sbjct: 711 LALANDGTLTIGTIDEIQKLHIRTIPLGESPRRIAYQESSQTFGVISMRMDLQDSNG 767
>gi|242010743|ref|XP_002426118.1| DNA damage-binding protein, putative [Pediculus humanus corporis]
gi|212510165|gb|EEB13380.1| DNA damage-binding protein, putative [Pediculus humanus corporis]
Length = 1148
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 87/106 (82%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQIS Y+FL +L+ +L + I+SVG+I+HSFWRSF T++K++ C+GFIDGDLIE
Sbjct: 1044 AIGLVTQISANFYNFLHELECKLTEVIKSVGKIKHSFWRSFTTEIKTEPCDGFIDGDLIE 1103
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ + MK +A GLQI GS K++ATVDD++K+VEDLTRIH
Sbjct: 1104 SFLDLSHEKMKEVAAGLQID-NGSGMKQEATVDDLVKMVEDLTRIH 1148
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 50/54 (92%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 69
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQE++QTFGVIT R+D+ +
Sbjct: 693 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQETTQTFGVITMRMDVHQ 746
>gi|350410909|ref|XP_003489174.1| PREDICTED: DNA damage-binding protein 1-like [Bombus impatiens]
Length = 1141
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI Y FL +L+ERL I+SVG+IEH+FWRSFNT++K + CEGFIDGDLIE
Sbjct: 1037 AIGLVTQIPFTFYEFLRNLEERLTGVIKSVGKIEHNFWRSFNTELKIEQCEGFIDGDLIE 1096
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M +A+GL I P S K++ATVDD++KIVEDLTRIH
Sbjct: 1097 SFLDLSPNKMADVASGLMIDDP-SGMKKEATVDDLVKIVEDLTRIH 1141
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQESSQTFGVIT R+DIQ++
Sbjct: 692 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQESSQTFGVITMRVDIQDSSG 748
>gi|340714589|ref|XP_003395809.1| PREDICTED: DNA damage-binding protein 1-like [Bombus terrestris]
Length = 1141
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI Y FL +L+ERL I+SVG+IEH+FWRSFNT++K + CEGFIDGDLIE
Sbjct: 1037 AIGLVTQIPFTFYEFLRNLEERLTGVIKSVGKIEHNFWRSFNTELKIEQCEGFIDGDLIE 1096
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M +A+GL I P S K++ATVDD++KIVEDLTRIH
Sbjct: 1097 SFLDLSPNKMADVASGLMIDDP-SGMKKEATVDDLVKIVEDLTRIH 1141
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQESSQTFGVIT R+DIQ++
Sbjct: 692 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQESSQTFGVITMRVDIQDSSG 748
>gi|321478515|gb|EFX89472.1| hypothetical protein DAPPUDRAFT_303245 [Daphnia pulex]
Length = 1158
Score = 139 bits (351), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ G+VTQ+ E Y FL ++Q R+A+ I+ VG+IEHSFWRSF T+ K + CEGFIDGDLIE
Sbjct: 1054 AIGVVTQLPSEFYHFLSEVQTRMARVIKPVGKIEHSFWRSFATERKVEPCEGFIDGDLIE 1113
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ MK +ATGLQ+ GS KR+ATV+DIIK++EDLTRIH
Sbjct: 1114 SFLDLSSDKMKEVATGLQMD-DGSGMKREATVEDIIKLIEDLTRIH 1158
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 50/57 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
L LATD+ T GTIDEIQKLHIRTVPLGE+PRRIAYQE++QTFGVIT+R+DI E+
Sbjct: 700 LVLATDTAVTIGTIDEIQKLHIRTVPLGESPRRIAYQENTQTFGVITSRVDIVESSG 756
>gi|58383228|ref|XP_312466.2| AGAP002472-PA [Anopheles gambiae str. PEST]
gi|55242305|gb|EAA08181.2| AGAP002472-PA [Anopheles gambiae str. PEST]
Length = 1138
Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 83/106 (78%), Gaps = 2/106 (1%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI + Y FL LQE L TI+SVG+I+HS+WRSF+T+ K + CEGFIDGDL+E
Sbjct: 1035 AIGLVTQIQSDFYEFLRKLQENLTNTIKSVGKIDHSYWRSFHTETKMERCEGFIDGDLVE 1094
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ + M+ + GL+I G TKR+ATVDDIIKIVEDLTRIH
Sbjct: 1095 SFLDLSREKMREASLGLEIDVEG--TKREATVDDIIKIVEDLTRIH 1138
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 51/57 (89%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALAT ++ FGTIDEIQKLHIRTVPLGE+PRRIAYQE+SQTFGVIT R+D+Q++
Sbjct: 692 LALATRNSVIFGTIDEIQKLHIRTVPLGESPRRIAYQEASQTFGVITFRMDVQDSSG 748
>gi|332030156|gb|EGI69950.1| DNA damage-binding protein 1 [Acromyrmex echinatior]
Length = 1138
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI Y FL ++++RL I+SVG+IEH+FWRSFNT++K + CEGFIDGDLIE
Sbjct: 1034 AIGLVTQIPVTFYEFLRNMEDRLNSVIKSVGKIEHNFWRSFNTELKIEQCEGFIDGDLIE 1093
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDLN M +A GL I GS K++ATVDD++KIVEDLTRIH
Sbjct: 1094 SFLDLNHDKMAEVAMGLMID-DGSGMKKEATVDDLVKIVEDLTRIH 1138
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQESSQTFGVIT R+D+QE+
Sbjct: 689 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQESSQTFGVITMRVDVQESSG 745
>gi|345498295|ref|XP_001607743.2| PREDICTED: DNA damage-binding protein 1-like [Nasonia vitripennis]
Length = 1140
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/104 (63%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVTQI Y FL +L++RL I+SVG+IEH+FWRSFNTD+K + CEGFIDGDLIESF
Sbjct: 1038 GLVTQIPSTFYEFLRNLEDRLTSVIKSVGKIEHNFWRSFNTDLKIEQCEGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ + M +A G+ I GS K++ATVDD++KIVEDLTRIH
Sbjct: 1098 LDLSHEKMAEVAMGIVID-DGSGMKKEATVDDLVKIVEDLTRIH 1140
Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATD+T T GTIDEIQKLHIRTVPL E+PRRIAYQES+QTFGVIT R+DIQE++
Sbjct: 692 LALATDNTVTIGTIDEIQKLHIRTVPLYESPRRIAYQESTQTFGVITMRVDIQESNG 748
>gi|157128864|ref|XP_001655231.1| DNA repair protein xp-e [Aedes aegypti]
gi|108882186|gb|EAT46411.1| AAEL002407-PB [Aedes aegypti]
Length = 1138
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 84/106 (79%), Gaps = 2/106 (1%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI + Y FL LQE L TI+SVG+I+H++WRSF+T++K++ CEGFIDGDL+E
Sbjct: 1035 AIGLVTQIPADYYEFLRKLQENLTDTIKSVGKIDHAYWRSFHTEMKTERCEGFIDGDLVE 1094
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ + M A GLQI G TK++ATVDDIIKIVEDLTRIH
Sbjct: 1095 SFLDLSREKMHEAALGLQIDVDG--TKKEATVDDIIKIVEDLTRIH 1138
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALAT ++ GTIDEIQKLHIRTVPLGE+PRRIAYQE+SQTFGVIT R DIQ++
Sbjct: 692 LALATKNSVILGTIDEIQKLHIRTVPLGESPRRIAYQEASQTFGVITVRTDIQDSSG 748
>gi|307205760|gb|EFN83990.1| DNA damage-binding protein 1 [Harpegnathos saltator]
Length = 1138
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI Y FL +L++RL I+SVG+IEH+FWRSFNT++K + CEGFIDGDLIE
Sbjct: 1034 AIGLVTQIPFAFYEFLRNLEDRLNSVIKSVGKIEHNFWRSFNTELKIEQCEGFIDGDLIE 1093
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDLN M +A GL I GS K++ATVDD++K+VEDLTRIH
Sbjct: 1094 SFLDLNHDKMAEVAMGLMID-DGSGMKKEATVDDLVKVVEDLTRIH 1138
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQESSQTFGVIT R+D+QE+
Sbjct: 689 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQESSQTFGVITMRVDVQESSG 745
>gi|91087281|ref|XP_975549.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
gi|270010588|gb|EFA07036.1| hypothetical protein TcasGA2_TC010010 [Tribolium castaneum]
Length = 1149
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI+ + Y FL +LQ +L+ I+SVG+I+HS WR+FNTD+K++ EGFIDGDLIE
Sbjct: 1045 AIGLVTQITQDFYDFLLELQNKLSTVIKSVGKIDHSQWRAFNTDIKTEPSEGFIDGDLIE 1104
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ MK +A GLQIT G K+D TVDD++K+VEDLTRIH
Sbjct: 1105 SFLDLSHDKMKEVADGLQITGEGG-MKQDCTVDDLVKMVEDLTRIH 1149
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 50/55 (90%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LALATDS+ T GTIDEIQKLHIRTVPL E+P+RIAYQE SQTFGV+T RIDIQ++
Sbjct: 691 LALATDSSVTIGTIDEIQKLHIRTVPLQESPKRIAYQEESQTFGVLTARIDIQDS 745
>gi|170057515|ref|XP_001864517.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876915|gb|EDS40298.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1138
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/106 (63%), Positives = 82/106 (77%), Gaps = 2/106 (1%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI P+ Y FL LQE L TI+SVGRI+H++WRSF+T++K++ EGFIDGDL+E
Sbjct: 1035 AIGLVTQIPPDYYEFLRKLQENLTNTIKSVGRIDHTYWRSFHTEMKTENSEGFIDGDLVE 1094
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL + M A GLQI G TK++A VDDIIKIVEDLTRIH
Sbjct: 1095 SFLDLTREKMHEAALGLQIDVEG--TKKEANVDDIIKIVEDLTRIH 1138
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 50/57 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALAT ++ GTIDEIQKLHIRTVPLGE+PRRIAYQE+SQTFGVIT R+DIQ++
Sbjct: 692 LALATKNSVILGTIDEIQKLHIRTVPLGESPRRIAYQEASQTFGVITVRMDIQDSSG 748
>gi|328788389|ref|XP_396048.3| PREDICTED: DNA damage-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 1141
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI Y FL +L++RL I+SVG+IEH+FWRSFNT++K + CEGFIDGDLIE
Sbjct: 1037 AIGLVTQIPFIFYEFLRNLEDRLTSVIKSVGKIEHNFWRSFNTELKIEQCEGFIDGDLIE 1096
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M +A+GL I P S K++ATVDD++KIVEDLTRIH
Sbjct: 1097 SFLDLSPDKMAEVASGLMIDDP-SGMKKEATVDDLVKIVEDLTRIH 1141
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQESSQTFGVIT R+DIQ++
Sbjct: 692 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQESSQTFGVITMRVDIQDSSG 748
>gi|380025901|ref|XP_003696702.1| PREDICTED: LOW QUALITY PROTEIN: DNA damage-binding protein 1-like
[Apis florea]
Length = 1141
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI Y FL +L++RL I+SVG+IEH+FWRSFNT++K + CEGFIDGDLIE
Sbjct: 1037 AIGLVTQIPFIFYEFLRNLEDRLTSVIKSVGKIEHNFWRSFNTELKIEQCEGFIDGDLIE 1096
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M +A+GL I P S K++ATVDD++KIVEDLTRIH
Sbjct: 1097 SFLDLSPDKMAEVASGLMIDDP-SGMKKEATVDDLVKIVEDLTRIH 1141
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQESSQTFGVIT R+DIQ++
Sbjct: 692 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQESSQTFGVITMRVDIQDSSG 748
>gi|357623954|gb|EHJ74904.1| putative DNA repair protein xp-e [Danaus plexippus]
Length = 1128
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFL 141
LV Q+S EL+ FL L+ERL TI+SVG+I HSFWRSFNTD+K++ EGFIDGDLIESFL
Sbjct: 1027 LVVQLSQELFDFLHQLEERLTHTIKSVGKIPHSFWRSFNTDIKTEPAEGFIDGDLIESFL 1086
Query: 142 DLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
DL+ + GLQI G RDATVDD+IKIVEDLTRIH
Sbjct: 1087 DLSRDMQQETLQGLQID-DGGGMMRDATVDDLIKIVEDLTRIH 1128
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 54/76 (71%)
Query: 3 QVTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+ ++ V LALATDST T GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTFGVIT
Sbjct: 673 HMCSLNAVAYPDSLALATDSTVTIGTIDEIQKLHIRTVPLGETPRRIAYQEASQTFGVIT 732
Query: 63 TRIDIQEADASLNSFV 78
R+D E S V
Sbjct: 733 MRVDKVEWTGGCGSLV 748
>gi|307186138|gb|EFN71863.1| DNA damage-binding protein 1 [Camponotus floridanus]
Length = 1136
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI Y FL +L+++L I+SVG+IEH+FWRSF TD+K + CEGFIDGDLIE
Sbjct: 1032 AIGLVTQIPFGFYEFLRNLEDKLTSVIKSVGKIEHNFWRSFKTDLKIEQCEGFIDGDLIE 1091
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M +A GL + GS K++ATVDD++KIVEDLTRIH
Sbjct: 1092 SFLDLSHDKMAEVAMGLMMD-DGSGMKKEATVDDLVKIVEDLTRIH 1136
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQESSQTFGVIT R+D+QE+
Sbjct: 689 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQESSQTFGVITMRVDVQESSG 745
>gi|260790329|ref|XP_002590195.1| hypothetical protein BRAFLDRAFT_128289 [Branchiostoma floridae]
gi|229275385|gb|EEN46206.1| hypothetical protein BRAFLDRAFT_128289 [Branchiostoma floridae]
Length = 1152
Score = 132 bits (332), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 85/110 (77%), Gaps = 4/110 (3%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQ+ + ++FL ++Q +L + I+SVG+IEHSFWRSFNT+ K++AC+GFIDGDLIE
Sbjct: 1043 AVGLVTQLPADFFNFLQEVQSKLTRVIKSVGKIEHSFWRSFNTERKTEACQGFIDGDLIE 1102
Query: 139 SFLDLNIKDMKSIATGLQ----ITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M+ + GLQ I GS KR+ TV+D+IK+VE+LTRIH
Sbjct: 1103 SFLDLSRDKMQEVVQGLQVGGAIMDDGSGMKRECTVEDLIKLVEELTRIH 1152
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 57/79 (72%), Gaps = 6/79 (7%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LAL DST T GTIDEIQKLHIRTVPL E+PRRIAYQE+SQTFGV++TR ++++A
Sbjct: 696 LALTNDSTLTIGTIDEIQKLHIRTVPLYESPRRIAYQETSQTFGVLSTRTEVEDASGGSG 755
Query: 76 ------SFVSTGLVTQISP 88
S +T L T +SP
Sbjct: 756 TQPVRPSASTTALSTSVSP 774
>gi|224587439|gb|ACN58665.1| DNA damage-binding protein 1 [Salmo salar]
Length = 444
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S YS L DLQ RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 342 GLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERKTEQATGFIDGDLIESF 401
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI GS KR+ATVD++IKIVE+LTRIH
Sbjct: 402 LDLGRAKMQEVVSTLQI-DDGSGMKREATVDEVIKIVEELTRIH 444
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 22 STFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
ST T GTIDEIQKLHIRTVPL E+PRRI YQE SQ FGV+++R+++Q+A +
Sbjct: 1 STLTIGTIDEIQKLHIRTVPLYESPRRICYQEVSQCFGVLSSRVEMQDASGT 52
>gi|166158025|ref|NP_001107422.1| damage-specific DNA binding protein 1, 127kDa [Xenopus (Silurana)
tropicalis]
gi|157422734|gb|AAI53474.1| Zgc:63840 protein [Danio rerio]
gi|163916541|gb|AAI57552.1| LOC100135265 protein [Xenopus (Silurana) tropicalis]
Length = 306
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S YS L DLQ RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 204 GLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERKTEQATGFIDGDLIESF 263
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI GS KR+ATVD++IKIVE+LTRIH
Sbjct: 264 LDLGQAKMQEVVSTLQI-DDGSGMKREATVDEVIKIVEELTRIH 306
>gi|385865228|gb|AFI92852.1| DNA damage-binding protein 1 [Danio rerio]
Length = 1140
Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S YS L DLQ RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERKTEQATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI GS KR+ATVD++IKIVE+LTRIH
Sbjct: 1098 LDLGRAKMQEVVSTLQID-DGSGMKREATVDEVIKIVEELTRIH 1140
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 49/58 (84%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+P+RI YQE SQ FGV+++R+++Q+A +
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPKRICYQEVSQCFGVLSSRVEMQDASGT 748
>gi|443707495|gb|ELU03057.1| hypothetical protein CAPTEDRAFT_148808 [Capitella teleta]
Length = 1084
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVTQ+ E Y FL ++Q +LA+TI+SVG++EH+FWRSF+T+ K++ GFIDGDLIESF
Sbjct: 982 GLVTQLPQEFYLFLLEVQNKLAKTIKSVGKVEHAFWRSFHTERKTEPATGFIDGDLIESF 1041
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ + GLQ+ GS KR+A VDD++K++E+LTRIH
Sbjct: 1042 LDLSRDKMQEVVQGLQMD-DGSGMKREAAVDDLVKMIEELTRIH 1084
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 49/58 (84%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA D T T GTIDEIQKLHIR VPLGE PRRIAYQE+SQTFGVIT R D+Q+++ S
Sbjct: 635 LALANDCTLTIGTIDEIQKLHIRNVPLGETPRRIAYQEASQTFGVITLRSDLQDSNGS 692
>gi|348526664|ref|XP_003450839.1| PREDICTED: DNA damage-binding protein 1-like [Oreochromis niloticus]
Length = 1140
Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S YS L DLQ RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERKTEQATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI GS KR+ATVD++IKIVE+LTRIH
Sbjct: 1098 LDLGRAKMQEVVSTLQID-DGSGMKREATVDEVIKIVEELTRIH 1140
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PRRI YQE SQ FGV+++R++IQ+ +
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRRICYQEVSQCFGVLSSRVEIQDVSGT 748
>gi|259155222|ref|NP_001158852.1| DNA damage-binding protein 1 [Salmo salar]
gi|223647700|gb|ACN10608.1| DNA damage-binding protein 1 [Salmo salar]
Length = 1139
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S YS L DLQ RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1037 GLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERKTEQATGFIDGDLIESF 1096
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI GS KR+ATVD++IKIVE+LTRIH
Sbjct: 1097 LDLGRAKMQEVVSTLQID-DGSGMKREATVDEVIKIVEELTRIH 1139
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PRRI YQE SQ FGV+++R+++Q+A +
Sbjct: 690 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRRICYQEVSQCFGVLSSRVEMQDASGT 747
>gi|326919947|ref|XP_003206238.1| PREDICTED: DNA damage-binding protein 1-like [Meleagris gallopavo]
Length = 1079
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 977 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1036
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ATVDD+IKIVE+LTRIH
Sbjct: 1037 LDISRPKMQEVVANLQID-DGSGMKREATVDDLIKIVEELTRIH 1079
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 630 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGG 687
>gi|224050582|ref|XP_002191856.1| PREDICTED: DNA damage-binding protein 1 [Taeniopygia guttata]
Length = 1140
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ATVDD+IKIVE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQID-DGSGMKREATVDDLIKIVEELTRIH 1140
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGG 748
>gi|223647932|gb|ACN10724.1| DNA damage-binding protein 1 [Salmo salar]
Length = 1139
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 64/104 (61%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S YS L DLQ RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1037 GLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERKTEQATGFIDGDLIESF 1096
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI GS KR+ATVD++IKIVE+LTRIH
Sbjct: 1097 LDLGRAKMQEVVSTLQID-DGSGMKREATVDEVIKIVEELTRIH 1139
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/58 (67%), Positives = 49/58 (84%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PRRI YQE SQ FGV+++R+++Q+A +
Sbjct: 690 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRRICYQEVSQCFGVLSSRVEMQDASGT 747
>gi|345328202|ref|XP_003431248.1| PREDICTED: DNA damage-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 1045
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 943 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1002
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ATVDD+IKIVE+LTRIH
Sbjct: 1003 LDISRPKMQEVVANLQID-DGSGMKREATVDDLIKIVEELTRIH 1045
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 51/66 (77%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 596 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEGSQCFGVLSSRIEVQDASGGTT 655
Query: 76 SFVSTG 81
+ +G
Sbjct: 656 ALRPSG 661
>gi|327278830|ref|XP_003224163.1| PREDICTED: DNA damage-binding protein 1-like [Anolis carolinensis]
Length = 1140
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ATVDD+IKIVE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQID-DGSGMKREATVDDLIKIVEELTRIH 1140
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLSESPRKICYQEVSQCFGVLSSRIEVQDASGG 748
>gi|45383688|ref|NP_989547.1| DNA damage-binding protein 1 [Gallus gallus]
gi|82098863|sp|Q805F9.1|DDB1_CHICK RecName: Full=DNA damage-binding protein 1; AltName: Full=DDB p127
subunit; AltName: Full=Damage-specific DNA-binding
protein 1; AltName: Full=UV-damaged DNA-binding factor
gi|28375613|dbj|BAC56999.1| damaged-DNA binding protein DDB p127 subunit [Gallus gallus]
gi|53130071|emb|CAG31438.1| hypothetical protein RCJMB04_6h2 [Gallus gallus]
Length = 1140
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/104 (59%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ATVDD+IKIVE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQID-DGSGMKREATVDDLIKIVEELTRIH 1140
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDA 745
>gi|410912407|ref|XP_003969681.1| PREDICTED: DNA damage-binding protein 1-like [Takifugu rubripes]
Length = 1140
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S +S L DLQ RL + I+SVG+IEHSFWRSF+T+ K++ +GFIDGDLIESF
Sbjct: 1038 GLVTSLSEGWHSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERKTEQAKGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI GS KR+ATVD++IKIVE+LTRIH
Sbjct: 1098 LDLGRAKMQEVVSTLQID-DGSGMKREATVDEVIKIVEELTRIH 1140
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PRRI YQE SQ FGV+++R++IQ+ +
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRRICYQEVSQCFGVLSSRVEIQDVSGT 748
>gi|383863765|ref|XP_003707350.1| PREDICTED: DNA damage-binding protein 1-like [Megachile rotundata]
Length = 1138
Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLVTQI Y FL L+ RL + I+SVG+IEH FWRSFNT++K + CEGFIDGDLIE
Sbjct: 1034 AIGLVTQIPFTFYEFLRHLEYRLTEVIKSVGKIEHRFWRSFNTELKVENCEGFIDGDLIE 1093
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M +A L + S +++ATVDD++KIVEDLTRIH
Sbjct: 1094 SFLDLSPDKMAEVAVDLMMD-DSSGMRKEATVDDLVKIVEDLTRIH 1138
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQE+SQTFGVIT R+DIQ++
Sbjct: 692 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQENSQTFGVITMRVDIQDSSG 748
>gi|194377326|dbj|BAG57611.1| unnamed protein product [Homo sapiens]
Length = 451
Score = 125 bits (313), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 349 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 408
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 409 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 451
>gi|194381178|dbj|BAG64157.1| unnamed protein product [Homo sapiens]
Length = 826
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 724 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 783
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 784 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 826
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 69
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 377 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 430
>gi|427780151|gb|JAA55527.1| Putative dna damage-binding protein 1 [Rhipicephalus pulchellus]
Length = 1181
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLV+Q+ + Y+FL ++QE+L + I+SVG+I+H+FWRSF+T+ K++ GFIDGDLIE
Sbjct: 1077 AIGLVSQLPADFYTFLSEVQEKLTKVIKSVGKIDHAFWRSFSTERKTEPAVGFIDGDLIE 1136
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M+ + G+Q+ GS KRDA+VDD+IKI+E+L+RIH
Sbjct: 1137 SFLDLSRDKMQEVVQGIQMD-DGSGMKRDASVDDLIKIIEELSRIH 1181
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 45/52 (86%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
LALA D+T GTIDEIQKLHIRTVPLGE PRRIAYQE++QTFGVIT R DI
Sbjct: 730 LALANDNTLLIGTIDEIQKLHIRTVPLGELPRRIAYQEATQTFGVITIRNDI 781
>gi|301616502|ref|XP_002937687.1| PREDICTED: DNA damage-binding protein 1-like [Xenopus (Silurana)
tropicalis]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ TVDD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVIANLQID-DGSGMKRETTVDDLIKVVEELTRIH 1140
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGG 748
>gi|147906138|ref|NP_001083624.1| DNA damage-binding protein 1 [Xenopus laevis]
gi|82186503|sp|Q6P6Z0.1|DDB1_XENLA RecName: Full=DNA damage-binding protein 1; AltName:
Full=Damage-specific DNA-binding protein 1
gi|38303806|gb|AAH61946.1| Ddb1 protein [Xenopus laevis]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ TVDD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVIANLQID-DGSGMKRETTVDDLIKVVEELTRIH 1140
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLFESPRKICYQEVSQCFGVLSSRIEVQDASGG 748
>gi|427788481|gb|JAA59692.1| Putative dna damage-binding protein 1 [Rhipicephalus pulchellus]
Length = 1156
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLV+Q+ + Y+FL ++QE+L + I+SVG+I+H+FWRSF+T+ K++ GFIDGDLIE
Sbjct: 1052 AIGLVSQLPADFYTFLSEVQEKLTKVIKSVGKIDHAFWRSFSTERKTEPAVGFIDGDLIE 1111
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M+ + G+Q+ GS KRDA+VDD+IKI+E+L+RIH
Sbjct: 1112 SFLDLSRDKMQEVVQGIQMD-DGSGMKRDASVDDLIKIIEELSRIH 1156
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 45/52 (86%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
LALA D+T GTIDEIQKLHIRTVPLGE PRRIAYQE++QTFGVIT R DI
Sbjct: 705 LALANDNTLLIGTIDEIQKLHIRTVPLGELPRRIAYQEATQTFGVITIRNDI 756
>gi|194389106|dbj|BAG61570.1| unnamed protein product [Homo sapiens]
Length = 1009
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 907 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 966
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 967 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1009
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q
Sbjct: 560 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQ 612
>gi|81868411|sp|Q9ESW0.1|DDB1_RAT RecName: Full=DNA damage-binding protein 1; AltName:
Full=Damage-specific DNA-binding protein 1
gi|9843869|emb|CAB89874.2| damage-specific DNA binding protein 1 [Rattus norvegicus]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA ST T GT++EIQKLHIRTVP+ E+PR+I YQE SQ FGV++TRI++Q+
Sbjct: 691 LALANTSTLTIGTMNEIQKLHIRTVPIYESPRKICYQEVSQCFGVLSTRIEVQDTSGG 748
>gi|413081953|ref|NP_741992.2| DNA damage-binding protein 1 [Rattus norvegicus]
gi|293344614|ref|XP_002725831.1| PREDICTED: DNA damage-binding protein 1 [Rattus norvegicus]
gi|293356422|ref|XP_002728912.1| PREDICTED: DNA damage-binding protein 1 [Rattus norvegicus]
gi|149062405|gb|EDM12828.1| damage-specific DNA binding protein 1 [Rattus norvegicus]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|395852550|ref|XP_003798801.1| PREDICTED: DNA damage-binding protein 1 [Otolemur garnettii]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|270346571|pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Hbx
gi|270346573|pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Whx
gi|270346575|pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Ddb2
gi|270346577|pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdtc1
gi|270346579|pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Iqwd1
gi|270346581|pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr40a
gi|270346583|pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr22
gi|270346585|pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr21a
gi|270346587|pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
gi|270346588|pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of
Wdr42a
Length = 1143
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1041 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1100
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1101 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1143
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 694 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 751
>gi|90108797|pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
gi|90108798|pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
gi|90108801|pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
gi|116667897|pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
gi|1136228|gb|AAA88883.1| UV-damaged DNA binding factor [Homo sapiens]
gi|1588524|prf||2208446A xeroderma pigmentosum group E-binding factor
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|311247551|ref|XP_003122699.1| PREDICTED: DNA damage-binding protein 1-like isoform 1 [Sus scrofa]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|2632123|emb|CAA05770.1| Xeroderma Pigmentosum Group E Complementing protein [Homo sapiens]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|74138855|dbj|BAE27231.1| unnamed protein product [Mus musculus]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGG 748
>gi|418316|sp|P33194.1|DDB1_CERAE RecName: Full=DNA damage-binding protein 1; AltName: Full=DDB p127
subunit; AltName: Full=DDBa; AltName:
Full=Damage-specific DNA-binding protein 1; AltName:
Full=UV-damaged DNA-binding protein 1; Short=UV-DDB 1
gi|304026|gb|AAA03021.1| UV-damaged DNA-binding protein [Chlorocebus aethiops]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|122692537|ref|NP_001073731.1| DNA damage-binding protein 1 [Bos taurus]
gi|426251842|ref|XP_004019630.1| PREDICTED: DNA damage-binding protein 1 [Ovis aries]
gi|134034086|sp|A1A4K3.1|DDB1_BOVIN RecName: Full=DNA damage-binding protein 1; AltName:
Full=Damage-specific DNA-binding protein 1
gi|119223918|gb|AAI26630.1| Damage-specific DNA binding protein 1, 127kDa [Bos taurus]
gi|296471644|tpg|DAA13759.1| TPA: DNA damage-binding protein 1 [Bos taurus]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|354504619|ref|XP_003514371.1| PREDICTED: DNA damage-binding protein 1-like [Cricetulus griseus]
gi|344258340|gb|EGW14444.1| DNA damage-binding protein 1 [Cricetulus griseus]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|361132523|pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
gi|361132525|pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1042 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1101
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1102 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1144
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 695 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 752
>gi|441604084|ref|XP_004087862.1| PREDICTED: LOW QUALITY PROTEIN: DNA damage-binding protein 1
[Nomascus leucogenys]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|384941436|gb|AFI34323.1| DNA damage-binding protein 1 [Macaca mulatta]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|344295432|ref|XP_003419416.1| PREDICTED: DNA damage-binding protein 1 [Loxodonta africana]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|119594343|gb|EAW73937.1| damage-specific DNA binding protein 1, 127kDa, isoform CRA_e [Homo
sapiens]
Length = 896
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 794 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 853
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 854 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 896
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 447 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 504
>gi|5353754|gb|AAD42230.1|AF159853_1 damage-specific DNA binding protein 1 [Mus musculus]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGG 748
>gi|197097564|ref|NP_001126613.1| DNA damage-binding protein 1 [Pongo abelii]
gi|75041202|sp|Q5R649.1|DDB1_PONAB RecName: Full=DNA damage-binding protein 1; AltName:
Full=Damage-specific DNA-binding protein 1
gi|55732122|emb|CAH92767.1| hypothetical protein [Pongo abelii]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|149725200|ref|XP_001502072.1| PREDICTED: DNA damage-binding protein 1 [Equus caballus]
Length = 1140
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGG 748
>gi|148529014|ref|NP_001914.3| DNA damage-binding protein 1 [Homo sapiens]
gi|296218432|ref|XP_002807395.1| PREDICTED: LOW QUALITY PROTEIN: DNA damage-binding protein 1
[Callithrix jacchus]
gi|397516558|ref|XP_003828491.1| PREDICTED: DNA damage-binding protein 1 [Pan paniscus]
gi|402893195|ref|XP_003909786.1| PREDICTED: DNA damage-binding protein 1 [Papio anubis]
gi|426368721|ref|XP_004051351.1| PREDICTED: DNA damage-binding protein 1 [Gorilla gorilla gorilla]
gi|12643730|sp|Q16531.1|DDB1_HUMAN RecName: Full=DNA damage-binding protein 1; AltName: Full=DDB p127
subunit; AltName: Full=DNA damage-binding protein a;
Short=DDBa; AltName: Full=Damage-specific DNA-binding
protein 1; AltName: Full=HBV X-associated protein 1;
Short=XAP-1; AltName: Full=UV-damaged DNA-binding factor;
AltName: Full=UV-damaged DNA-binding protein 1;
Short=UV-DDB 1; AltName: Full=XPE-binding factor;
Short=XPE-BF; AltName: Full=Xeroderma pigmentosum group
E-complementing protein; Short=XPCe
gi|203282525|pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
gi|695362|gb|AAA62838.1| X-associated protein 1, partial [Homo sapiens]
gi|1052865|gb|AAC50349.1| DDBa p127 [Homo sapiens]
gi|15079750|gb|AAH11686.1| Damage-specific DNA binding protein 1, 127kDa [Homo sapiens]
gi|29792243|gb|AAH50530.1| Damage-specific DNA binding protein 1, 127kDa [Homo sapiens]
gi|30354567|gb|AAH51764.1| Damage-specific DNA binding protein 1, 127kDa [Homo sapiens]
gi|61354161|gb|AAX44048.1| damage-specific DNA binding protein 1, 127kDa [Homo sapiens]
gi|119594341|gb|EAW73935.1| damage-specific DNA binding protein 1, 127kDa, isoform CRA_c [Homo
sapiens]
gi|168275638|dbj|BAG10539.1| DNA damage-binding protein 1 [synthetic construct]
gi|189065506|dbj|BAG35345.1| unnamed protein product [Homo sapiens]
gi|355566436|gb|EHH22815.1| Damage-specific DNA-binding protein 1 [Macaca mulatta]
gi|380784123|gb|AFE63937.1| DNA damage-binding protein 1 [Macaca mulatta]
gi|380808126|gb|AFE75938.1| DNA damage-binding protein 1 [Macaca mulatta]
gi|380810144|gb|AFE76947.1| DNA damage-binding protein 1 [Macaca mulatta]
gi|383408123|gb|AFH27275.1| DNA damage-binding protein 1 [Macaca mulatta]
gi|410305600|gb|JAA31400.1| damage-specific DNA binding protein 1, 127kDa [Pan troglodytes]
gi|410352015|gb|JAA42611.1| damage-specific DNA binding protein 1, 127kDa [Pan troglodytes]
Length = 1140
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|400260815|pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
gi|401871507|pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb)
Dimerization And Its Roles In Chromatinized Dna Repair
Length = 1150
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1048 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1107
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1108 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1150
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 701 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 758
>gi|221046721|pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
gi|221046723|pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
gi|221046725|pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1056 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1115
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1116 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1158
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 709 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 766
>gi|73983859|ref|XP_533275.2| PREDICTED: DNA damage-binding protein 1 [Canis lupus familiaris]
gi|291409601|ref|XP_002721069.1| PREDICTED: damage-specific DNA binding protein 1 [Oryctolagus
cuniculus]
gi|301781686|ref|XP_002926259.1| PREDICTED: DNA damage-binding protein 1-like [Ailuropoda melanoleuca]
Length = 1140
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|7657011|ref|NP_056550.1| DNA damage-binding protein 1 [Mus musculus]
gi|134034087|sp|Q3U1J4.2|DDB1_MOUSE RecName: Full=DNA damage-binding protein 1; AltName: Full=DDB p127
subunit; AltName: Full=Damage-specific DNA-binding
protein 1; AltName: Full=UV-damaged DNA-binding factor
gi|5931596|dbj|BAA84699.1| XPE UV-damaged DNA binding factor [Mus musculus]
gi|16307148|gb|AAH09661.1| Damage specific DNA binding protein 1 [Mus musculus]
gi|74182145|dbj|BAE34102.1| unnamed protein product [Mus musculus]
gi|74196166|dbj|BAE32993.1| unnamed protein product [Mus musculus]
Length = 1140
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGG 748
>gi|403255013|ref|XP_003920244.1| PREDICTED: DNA damage-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 1140
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|395544366|ref|XP_003774082.1| PREDICTED: DNA damage-binding protein 1 [Sarcophilus harrisii]
Length = 1239
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1137 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1196
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1197 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1239
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 790 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGG 847
>gi|74178494|dbj|BAE32502.1| unnamed protein product [Mus musculus]
Length = 1140
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRT PL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTDPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGG 748
>gi|355752055|gb|EHH56175.1| Damage-specific DNA-binding protein 1, partial [Macaca fascicularis]
Length = 1125
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1023 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1082
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1083 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1125
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 676 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 733
>gi|74215029|dbj|BAE33503.1| unnamed protein product [Mus musculus]
Length = 1140
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGG 748
>gi|359546285|pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
gi|361132519|pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1057 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1116
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1117 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1159
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 710 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 767
>gi|221046711|pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct
Containing Dna-Duplex
gi|221046715|pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
gi|221046719|pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1056 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1115
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1116 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1158
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 709 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 766
>gi|119594340|gb|EAW73934.1| damage-specific DNA binding protein 1, 127kDa, isoform CRA_b [Homo
sapiens]
Length = 923
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 821 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 880
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 881 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 923
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 474 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 531
>gi|410974071|ref|XP_003993471.1| PREDICTED: DNA damage-binding protein 1 [Felis catus]
Length = 1193
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1091 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1150
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1151 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1193
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 69
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 744 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 797
>gi|358440058|pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
gi|358440062|pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1057 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1116
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1117 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1159
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 710 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 767
>gi|358440070|pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
gi|358440072|pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1057 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1116
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1117 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1159
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 710 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 767
>gi|358440066|pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1057 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1116
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1117 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1159
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 710 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 767
>gi|348560393|ref|XP_003465998.1| PREDICTED: DNA damage-binding protein 1-like [Cavia porcellus]
Length = 1140
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEQATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|432851195|ref|XP_004066902.1| PREDICTED: DNA damage-binding protein 1-like [Oryzias latipes]
Length = 1140
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/104 (59%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S +S L DLQ RL + I+SVG+IEHSFWRSF T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSEGWHSLLLDLQNRLNKVIKSVGKIEHSFWRSFYTERKTEQATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI G KR+ATVD++IKIVE+LTRIH
Sbjct: 1098 LDLGRAKMQEVVSTLQID-DGGGMKREATVDEVIKIVEELTRIH 1140
Score = 89.4 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LALA +ST T GTIDEIQKLHIRTVPL E+PRRI YQE SQ FGV+++R++IQ+A +++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRRICYQEVSQCFGVLSSRVEIQDASGAIS 750
Query: 76 S 76
+
Sbjct: 751 A 751
>gi|74208347|dbj|BAE26370.1| unnamed protein product [Mus musculus]
Length = 599
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 497 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 556
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 557 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 599
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/55 (69%), Positives = 48/55 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 150 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDS 204
>gi|390366809|ref|XP_780126.3| PREDICTED: DNA damage-binding protein 1-like isoform 1
[Strongylocentrotus purpuratus]
Length = 630
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 78/106 (73%), Gaps = 2/106 (1%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S GLVTQ++ E Y FL ++Q +L + I+SVG+I+HSFWRSF ++ K++ + FIDGDL+E
Sbjct: 527 SVGLVTQLNEEFYRFLLEVQNKLTKVIKSVGKIKHSFWRSFYSERKTEPMDNFIDGDLLE 586
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ M +A GLQI G KRD +D+IKIVE+LTRIH
Sbjct: 587 SFLDLSRDTMDEVAQGLQIDDGG--MKRDCMANDLIKIVEELTRIH 630
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 47/65 (72%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LAL D+T G+IDEIQKLHIRTVPLGE P RI YQE SQTFG+I+TR D+ ++ +
Sbjct: 176 LALCNDTTLMIGSIDEIQKLHIRTVPLGETPLRITYQEPSQTFGIISTRTDVVDSSGTTA 235
Query: 76 SFVST 80
S T
Sbjct: 236 SMGQT 240
>gi|198432471|ref|XP_002129229.1| PREDICTED: similar to DNA damage-binding protein 1 (Damage-specific
DNA-binding protein 1) (UV-damaged DNA-binding factor)
(DDB p127 subunit) (DNA damage-binding protein a) (DDBa)
(UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma
pigmentosum group E-co... isoform 2 [Ciona intestinalis]
Length = 1142
Score = 120 bits (300), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S G++T + +LY+FL +Q RLA+ I+SVG I+H WRSF T+ K++A GF+DGDLIE
Sbjct: 1039 SIGVITTVDEDLYAFLHSIQNRLAKVIKSVGNIDHESWRSFCTNEKTEAHRGFVDGDLIE 1098
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
FLDLN + M +A GL + G TKR+ATVDD+IK VE++ RIH
Sbjct: 1099 CFLDLNREKMAEVAKGLMVKEHG--TKREATVDDLIKAVEEMNRIH 1142
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 44/55 (80%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LALA D+T GTIDEIQKLHIRTVPL E+PRRIAYQE SQ FG++T R D +A
Sbjct: 698 LALANDNTLLIGTIDEIQKLHIRTVPLYESPRRIAYQEESQCFGLVTLRTDSVDA 752
>gi|194901554|ref|XP_001980317.1| GG19434 [Drosophila erecta]
gi|190652020|gb|EDV49275.1| GG19434 [Drosophila erecta]
Length = 1140
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL + M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFQINTKVEPSEGFIDGDLIESFLDLGREKMRDAVQGLELTLNGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALA + GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|195500686|ref|XP_002097479.1| GE26244 [Drosophila yakuba]
gi|194183580|gb|EDW97191.1| GE26244 [Drosophila yakuba]
Length = 1140
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL LQERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLQERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL+ + M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFQINNKVEPSEGFIDGDLIESFLDLSREKMRDSVQGLELTLNGE--RKGADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 42/53 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALA + GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|194741158|ref|XP_001953056.1| GF17579 [Drosophila ananassae]
gi|190626115|gb|EDV41639.1| GF17579 [Drosophila ananassae]
Length = 1140
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL M+ GL+IT G ++ A V+D+IK
Sbjct: 1074 YRNFQINTKVEPSEGFIDGDLIESFLDLGRDKMRDAVQGLEITLNGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALAT ++ GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALATKNSVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|195395112|ref|XP_002056180.1| GJ10363 [Drosophila virilis]
gi|194142889|gb|EDW59292.1| GJ10363 [Drosophila virilis]
Length = 1140
Score = 115 bits (289), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+I+H++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIDHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R++ + K + EGFIDGDLIESFLDLN M+ +GL++T G ++ A V+D+IK
Sbjct: 1074 YRNYQINTKVEPSEGFIDGDLIESFLDLNRDKMREAVSGLELTLNGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALAT ++ GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALATKNSVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|198432469|ref|XP_002129207.1| PREDICTED: similar to DNA damage-binding protein 1 (Damage-specific
DNA-binding protein 1) (UV-damaged DNA-binding factor)
(DDB p127 subunit) (DNA damage-binding protein a) (DDBa)
(UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma
pigmentosum group E-co... isoform 1 [Ciona intestinalis]
Length = 1150
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S G++T + +LY+FL +Q RLA+ I+SVG I+H WRSF T+ K++A GF+DGDLIE
Sbjct: 1043 SIGVITTVDEDLYAFLHSIQNRLAKVIKSVGNIDHESWRSFCTNEKTEAHRGFVDGDLIE 1102
Query: 139 SFLDLNIKDMKSIATGLQITPPGST--TKRDATVDDIIKIVEDLTRIH 184
FLDLN + M +A GL + TKR+ATVDD+IK VE++ RIH
Sbjct: 1103 CFLDLNREKMAEVAKGLMVKNFNDQHGTKREATVDDLIKAVEEMNRIH 1150
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 44/55 (80%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LALA D+T GTIDEIQKLHIRTVPL E+PRRIAYQE SQ FG++T R D +A
Sbjct: 702 LALANDNTLLIGTIDEIQKLHIRTVPLYESPRRIAYQEESQCFGLVTLRTDSVDA 756
>gi|195037449|ref|XP_001990173.1| GH18378 [Drosophila grimshawi]
gi|193894369|gb|EDV93235.1| GH18378 [Drosophila grimshawi]
Length = 1140
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 86/129 (66%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+I+H++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIDHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R++ + K + EGFIDGDLIESFLDLN + M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNYQINTKVEPSEGFIDGDLIESFLDLNREKMREAVLGLELTMGGE--RKAADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALAT ++ GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALATKNSVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|195571247|ref|XP_002103615.1| GD18880 [Drosophila simulans]
gi|194199542|gb|EDX13118.1| GD18880 [Drosophila simulans]
Length = 1140
Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL+ M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFQINTKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 42/53 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALA + GTIDEIQKLHIRTVPLGE PRRIAYQESSQTF V T RID+
Sbjct: 690 LALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDVH 742
>gi|195449948|ref|XP_002072297.1| GK22405 [Drosophila willistoni]
gi|194168382|gb|EDW83283.1| GK22405 [Drosophila willistoni]
Length = 1140
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL+ M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFQINTKVEPSEGFIDGDLIESFLDLSRDKMREAVLGLELTLYGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALAT ++ GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALATKNSVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|195145844|ref|XP_002013900.1| GL24391 [Drosophila persimilis]
gi|194102843|gb|EDW24886.1| GL24391 [Drosophila persimilis]
Length = 1140
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL+ M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFQINTKVEPSEGFIDGDLIESFLDLSRDKMRDAVLGLELTLNGE--RKGADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALAT ++ GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALATKNSVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|125774475|ref|XP_001358496.1| GA20574 [Drosophila pseudoobscura pseudoobscura]
gi|54638233|gb|EAL27635.1| GA20574 [Drosophila pseudoobscura pseudoobscura]
Length = 1140
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL+ M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFQINTKVEPSEGFIDGDLIESFLDLSRDKMRDAVLGLELTLNGE--RKGADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALAT ++ GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALATKNSVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|21357503|ref|NP_650257.1| piccolo [Drosophila melanogaster]
gi|74872881|sp|Q9XYZ5.1|DDB1_DROME RecName: Full=DNA damage-binding protein 1; Short=D-DDB1; AltName:
Full=Damage-specific DNA-binding protein 1; AltName:
Full=Protein piccolo
gi|4928452|gb|AAD33592.1|AF132145_1 damage-specific DNA binding protein DDBa p127 subunit [Drosophila
melanogaster]
gi|7299719|gb|AAF54901.1| piccolo [Drosophila melanogaster]
gi|220942640|gb|ACL83863.1| DDB1-PA [synthetic construct]
Length = 1140
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL+ M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFQINSKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 42/53 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALA + GTIDEIQKLHIRTVPLGE PRRIAYQESSQTF V T RID+
Sbjct: 690 LALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDVH 742
>gi|195108657|ref|XP_001998909.1| GI23368 [Drosophila mojavensis]
gi|193915503|gb|EDW14370.1| GI23368 [Drosophila mojavensis]
Length = 1140
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+I+H++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIDHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R++ + K + EGFIDGDLIESFLDL+ M TGL++T G ++ A V+D+IK
Sbjct: 1074 YRNYQINTKVEPSEGFIDGDLIESFLDLSRDKMHEAVTGLELTLNGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALAT ++ GTIDEIQKLHIRTVPLGE PRRIAYQE+SQTF V T RID+
Sbjct: 690 LALATKNSVILGTIDEIQKLHIRTVPLGEGPRRIAYQEASQTFAVSTLRIDVH 742
>gi|241260143|ref|XP_002404926.1| DNA repair protein xp-E, putative [Ixodes scapularis]
gi|215496735|gb|EEC06375.1| DNA repair protein xp-E, putative [Ixodes scapularis]
Length = 1148
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 9/114 (7%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF--------WRSFNTDVKSDACEG 130
+ GLV Q+ + Y+FL ++Q L + I+SVG+I+H+ WRSF+T+ K++ +G
Sbjct: 1036 AIGLVAQLPSDFYNFLLEVQGNLTKVIKSVGKIDHTLYPFVRLFTWRSFSTERKTEQAQG 1095
Query: 131 FIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
FIDGDLIESFLDL+ M+ + G+Q+ GS KRDATVDD+IKI+E+L+R+H
Sbjct: 1096 FIDGDLIESFLDLSRDKMQEVLQGIQMD-DGSGMKRDATVDDLIKIIEELSRVH 1148
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 49/73 (67%), Gaps = 13/73 (17%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LALA D T GTIDEIQKLHIRTVPLGE RIAYQE++QTFGVIT R DIQ
Sbjct: 693 LALANDGTLLIGTIDEIQKLHIRTVPLGE---RIAYQEATQTFGVITIRNDIQ------- 742
Query: 76 SFVSTGLVTQISP 88
TG +T + P
Sbjct: 743 ---GTGGLTPVRP 752
>gi|440893607|gb|ELR46310.1| DNA damage-binding protein 1 [Bos grunniens mutus]
Length = 1143
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 76/107 (71%), Gaps = 4/107 (3%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFW---RSFNTDVKSDACEGFIDGDLI 137
GLVT +S Y+ L D+Q RL + I+SVG+IEHS + RSF+T+ K++ GFIDGDLI
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLYPSQRSFHTERKTEPATGFIDGDLI 1097
Query: 138 ESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
ESFLD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 ESFLDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1143
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|431910407|gb|ELK13480.1| DNA damage-binding protein 1 [Pteropus alecto]
Length = 1143
Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 76/107 (71%), Gaps = 4/107 (3%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFW---RSFNTDVKSDACEGFIDGDLI 137
GLVT +S Y+ L D+Q RL + I+SVG+IEHS + RSF+T+ K++ GFIDGDLI
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLYPSQRSFHTERKTEPATGFIDGDLI 1097
Query: 138 ESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
ESFLD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 ESFLDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1143
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|449283451|gb|EMC90093.1| DNA damage-binding protein 1 [Columba livia]
Length = 1140
Score = 112 bits (280), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 78/115 (67%), Gaps = 12/115 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFW-----------RSFNTDVKSDACE 129
GLVT +S Y+ L D+Q RL + I+SVG+IEHS + +SF+T+ K++
Sbjct: 1027 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLYPSLVQLRAWASQSFHTERKTEPAT 1086
Query: 130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
GFIDGDLIESFLD++ M+ + LQI GS KR+ATVDD+IKIVE+LTRIH
Sbjct: 1087 GFIDGDLIESFLDISRPKMQEVVANLQID-DGSGMKREATVDDLIKIVEELTRIH 1140
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 680 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGG 737
>gi|351699158|gb|EHB02077.1| DNA damage-binding protein 1 [Heterocephalus glaber]
Length = 1144
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 75/108 (69%), Gaps = 5/108 (4%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRS----FNTDVKSDACEGFIDGDL 136
GLVT +S Y+ L D+Q RL + I+SVG+IEHS + S F+T+ K++ GFIDGDL
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLYPSRAVSFHTERKTEQATGFIDGDL 1097
Query: 137 IESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
IESFLD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 IESFLDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1144
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|195996153|ref|XP_002107945.1| hypothetical protein TRIADDRAFT_18324 [Trichoplax adhaerens]
gi|190588721|gb|EDV28743.1| hypothetical protein TRIADDRAFT_18324 [Trichoplax adhaerens]
Length = 1134
Score = 109 bits (272), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ G+V ++P ++ F+ + +L+ ++ VG+IEH FWRSF+ D K++ C+ F+DGDL+E
Sbjct: 1031 AVGVVVTLAPAMFEFVSAIANKLSTVVKGVGKIEHQFWRSFSNDRKTEPCQSFVDGDLVE 1090
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ +DM+ +A GL I T R A V+D++K VE+L+RIH
Sbjct: 1091 SFLDLSPEDMQRVANGLTIQTADGT--RPAMVEDVLKTVEELSRIH 1134
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 38/56 (67%), Gaps = 4/56 (7%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEAD 71
LAL DS F GTIDEIQKLHIRT PLGE R QE SQ+FG+IT R ++ D
Sbjct: 691 LALVNDSGFIIGTIDEIQKLHIRTKPLGETTR----QEESQSFGIITCRTEVPSED 742
>gi|449684814|ref|XP_004210722.1| PREDICTED: DNA damage-binding protein 1-like, partial [Hydra
magnipapillata]
Length = 725
Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GLV + + FL +QE+L++TI+SVG+IEH FWRSF D K+D G +DGDLIE
Sbjct: 622 AIGLVAGLPKNTFDFLSQVQEKLSKTIKSVGKIEHEFWRSFYNDKKTDLAVGCVDGDLIE 681
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
S LDL + + +GL+I G KR+ TVDD+IK+VE+L+RIH
Sbjct: 682 SCLDLTRTQLHEVVSGLEIEEAG--IKRECTVDDLIKVVEELSRIH 725
>gi|193644722|ref|XP_001942922.1| PREDICTED: DNA damage-binding protein 1-like [Acyrthosiphon pisum]
Length = 1156
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 79/108 (73%), Gaps = 4/108 (3%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVTQ++P+++ FL DL++ LA ++ VG+I H FWRS++T+++++ E F+DGDLIESF
Sbjct: 1049 GLVTQLTPKMFDFLSDLEKSLATVVKGVGKINHQFWRSYHTEIRTEPSESFVDGDLIESF 1108
Query: 141 LDLNIKDMKSIATGLQITPPGSTTK--RDA--TVDDIIKIVEDLTRIH 184
LDL+ ++M ++ LQ K +D ++DD+IK+VEDLTRIH
Sbjct: 1109 LDLSKREMIAVVDALQGAYDHEFKKIPKDTKISLDDVIKLVEDLTRIH 1156
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LA+ATD+ GTIDE+QKLHIRT+PLGEAPRRIA+QESS++FG+IT RID+ E
Sbjct: 694 LAMATDTAIIIGTIDEMQKLHIRTIPLGEAPRRIAHQESSKSFGIITMRIDVHEG 748
>gi|410045300|ref|XP_508472.4| PREDICTED: DNA damage-binding protein 1 [Pan troglodytes]
Length = 1107
Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Query: 97 LQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQ 156
+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESFLD++ M+ + LQ
Sbjct: 1021 MQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQ 1080
Query: 157 ITPPGSTTKRDATVDDIIKIVEDLTRIH 184
GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1081 YD-DGSGMKREATADDLIKVVEELTRIH 1107
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 698 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 755
>gi|195329354|ref|XP_002031376.1| GM24084 [Drosophila sechellia]
gi|194120319|gb|EDW42362.1| GM24084 [Drosophila sechellia]
Length = 1140
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+ VG+I H F
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKLVGKIGHKF 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + + +GFIDGDLIESFLDL+ M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFRIHTQVEPSQGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 42/53 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALA + GTIDEIQKLHIRTVPLGE PRRIAYQESSQTF V T RID+
Sbjct: 690 LALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDVH 742
>gi|12805469|gb|AAH02210.1| Ddb1 protein, partial [Mus musculus]
Length = 86
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 98 QERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQI 157
Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESFLD++ M+ + LQ
Sbjct: 1 QNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQY 60
Query: 158 TPPGSTTKRDATVDDIIKIVEDLTRIH 184
GS KR+AT DD+IK+VE+LTRIH
Sbjct: 61 D-DGSGMKREATADDLIKVVEELTRIH 86
>gi|47230701|emb|CAF99894.1| unnamed protein product [Tetraodon nigroviridis]
Length = 953
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 8/104 (7%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S YS L DLQ RL + I++ WRSF+T+ K++ GFIDGDLIESF
Sbjct: 858 GLVTSLSEGWYSLLLDLQNRLNKVIKTT-------WRSFHTERKTEQATGFIDGDLIESF 910
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M+ + + LQI GS KR+ATVD++IKIVE+LTRIH
Sbjct: 911 LDLGRAKMQEVVSTLQID-DGSGMKREATVDEVIKIVEELTRIH 953
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PRRI YQE SQ FGV+++R++IQ+ +
Sbjct: 561 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRRICYQEVSQCFGVLSSRMEIQDVSGT 618
>gi|322787057|gb|EFZ13281.1| hypothetical protein SINV_13198 [Solenopsis invicta]
Length = 986
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQESSQTFGVIT R+D+QE+
Sbjct: 688 LALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQESSQTFGVITMRVDVQESSG 744
>gi|281345356|gb|EFB20940.1| hypothetical protein PANDA_015888 [Ailuropoda melanoleuca]
Length = 1124
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 3/106 (2%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGR-IEH-SFWRSFNTDVKSDACEGFIDGDLIE 138
GLVT +S Y+ L D+Q RL + I+++ + H S WRSF+T+ K++ GFIDGDLIE
Sbjct: 1020 GLVTSLSESWYNLLLDMQNRLNKVIKNITHSLTHLSTWRSFHTERKTEPATGFIDGDLIE 1079
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1080 SFLDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1124
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 673 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 730
>gi|391335522|ref|XP_003742140.1| PREDICTED: DNA damage-binding protein 1-like [Metaseiulus
occidentalis]
Length = 1154
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ G++ I ELY+ L +Q LA+TI+SVG+IEH FWR+F + K + GFIDGDLIE
Sbjct: 1050 AVGVIVPIKQELYAILNQIQTNLAKTIKSVGKIEHGFWRTFLAERKIEPATGFIDGDLIE 1109
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL + ++S++ +++ G +R+ T +D++K+VEDLTRIH
Sbjct: 1110 QLLDLPKEALESVSQSIKVDEEGG-HQRNMTPEDLVKLVEDLTRIH 1154
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
LALA++ F GTID IQKLHIRTVPLGE+PRRIAYQE + TFGVI +R D+
Sbjct: 692 LALASEDEFVIGTIDAIQKLHIRTVPLGESPRRIAYQEETGTFGVIVSRSDM 743
>gi|444513057|gb|ELV10249.1| DNA damage-binding protein 1 [Tupaia chinensis]
Length = 1146
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 72/110 (65%), Gaps = 7/110 (6%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRI------EHSFWRSFNTDVKSDACEGFIDG 134
GLVT +S Y+ L D+Q RL + I+ +I + S WRSF+T+ K++ GFIDG
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKRCFQISPNSLTDMSTWRSFHTERKTEPATGFIDG 1097
Query: 135 DLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
DLIESFLD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 DLIESFLDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1146
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|119594342|gb|EAW73936.1| damage-specific DNA binding protein 1, 127kDa, isoform CRA_d [Homo
sapiens]
Length = 1146
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 72/110 (65%), Gaps = 7/110 (6%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIR-----SVGRIEH-SFWRSFNTDVKSDACEGFIDG 134
GLVT +S Y+ L D+Q RL + I+ S + H S WRSF+T+ K++ GFIDG
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKRCFLISTCSLTHPSTWRSFHTERKTEPATGFIDG 1097
Query: 135 DLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
DLIESFLD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 DLIESFLDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1146
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|156389050|ref|XP_001634805.1| predicted protein [Nematostella vectensis]
gi|156221892|gb|EDO42742.1| predicted protein [Nematostella vectensis]
Length = 1157
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 74/109 (67%), Gaps = 7/109 (6%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFW-----RSFNTDVKSDACEGFIDGD 135
G+V QI+ +L++FL +Q++L + I+SVG+I+HS + + + K + GFIDGD
Sbjct: 1051 GIVAQIAQDLFNFLIQVQKKLNKVIKSVGKIDHSLYPFPHCSNLSHSRKMEPAHGFIDGD 1110
Query: 136 LIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LIESFLDL M+ + TGLQI G K++ TVDD++K VE+LTRIH
Sbjct: 1111 LIESFLDLPRARMEEVVTGLQIDDGG--MKKECTVDDLVKTVEELTRIH 1157
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 49/58 (84%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA D + T GTIDEIQKLHIRTVPLGE+PRRIAYQE++QTFGVI+ RI+I E S
Sbjct: 700 LALANDGSLTIGTIDEIQKLHIRTVPLGESPRRIAYQEATQTFGVISVRIEISEPGTS 757
>gi|393905247|gb|EJD73911.1| CPSF A subunit region family protein [Loa loa]
Length = 1145
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 72/109 (66%), Gaps = 5/109 (4%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ Q+ P LY+FL D+Q+RLA + RI H+ +R+F T+ +S+ GFIDGDLIES
Sbjct: 1037 GVIVQMPPVLYTFLHDVQKRLADYTENCMRISHTQYRTFETEKRSEVPNGFIDGDLIESL 1096
Query: 141 LDLNIKDMKSIATGLQIT----PPGSTTKR-DATVDDIIKIVEDLTRIH 184
LD+ + I GL++ P TT+ DAT +D++K+VEDL+RIH
Sbjct: 1097 LDMGKDSVGQIVNGLKMPLLNIPSSETTELVDATAEDVLKLVEDLSRIH 1145
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
L L ++ G ID+IQKLHIRTVPLGE+P RIAYQ + T V R++ +A
Sbjct: 692 LVLTDGNSLVIGRIDDIQKLHIRTVPLGESPSRIAYQPETNTIAVTVERLEFVDA 746
>gi|355683071|gb|AER97036.1| damage-specific DNA binding protein 1, 127kDa [Mustela putorius furo]
Length = 1122
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKR 166
LD++ M+ + LQ GS KR
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKR 1122
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|170589357|ref|XP_001899440.1| CPSF A subunit region family protein [Brugia malayi]
gi|158593653|gb|EDP32248.1| CPSF A subunit region family protein [Brugia malayi]
Length = 655
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 73/110 (66%), Gaps = 6/110 (5%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ Q+ P LY+FL D+Q+RLA+ + RI H+ +R+F T+ +S+A GFIDGDLIES
Sbjct: 546 GVIVQMPPVLYTFLQDVQKRLAEYAENCMRISHTQYRTFETEKRSEAPNGFIDGDLIESL 605
Query: 141 LDLNIKDMKSIATGLQ------ITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD+ ++ + GL+ I+ +T DA +D++K+VEDL+RIH
Sbjct: 606 LDMGKDSVEQVVNGLKMPLLNSISSSETTELVDALAEDVLKLVEDLSRIH 655
Score = 62.4 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
L L + G ID+IQKLHIRTVPLGE+P RIAYQ + T VI R+++
Sbjct: 192 LVLTDGHSLVIGRIDDIQKLHIRTVPLGESPSRIAYQPETNTIAVIVERLEV 243
>gi|340381612|ref|XP_003389315.1| PREDICTED: DNA damage-binding protein 1-like [Amphimedon
queenslandica]
Length = 1142
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ GL+ ++ + Y+ L LQ+++A I+SVG IEH +RSF+ + +S GFIDGDL+E
Sbjct: 1038 AIGLIGTLNMDTYTLLSKLQQKMAANIKSVGNIEHEIYRSFSNEHRSKPFAGFIDGDLVE 1097
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
FL+L M I G++ T + T+ D +VDDI+K++EDL+R+H
Sbjct: 1098 KFLELPRPQMSQIVQGIKTTDV-TGTEVDVSVDDILKLIEDLSRLH 1142
Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 38/56 (67%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEAD 71
LAL ST FG +D+IQ LHI T+PLGE+PR IAYQESSQTF V R D D
Sbjct: 694 LALVDSSTLIFGCVDQIQMLHIETIPLGESPRCIAYQESSQTFLVGGYRTDKSGPD 749
>gi|157128866|ref|XP_001655232.1| DNA repair protein xp-e [Aedes aegypti]
gi|108882187|gb|EAT46412.1| AAEL002407-PA [Aedes aegypti]
Length = 980
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
LALAT ++ GTIDEIQKLHIRTVPLGE+PRRIAYQE+SQTFGVIT R DIQ++
Sbjct: 692 LALATKNSVILGTIDEIQKLHIRTVPLGESPRRIAYQEASQTFGVITVRTDIQDSSG 748
>gi|312076590|ref|XP_003140929.1| CPSF A subunit region family protein [Loa loa]
Length = 655
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 14/118 (11%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ Q+ P LY+FL D+Q+RLA + RI H+ +R+F T+ +S+ GFIDGDLIES
Sbjct: 538 GVIVQMPPVLYTFLHDVQKRLADYTENCMRISHTQYRTFETEKRSEVPNGFIDGDLIESL 597
Query: 141 LDLNIKDMKSIATGLQI-------------TPPGSTTKR-DATVDDIIKIVEDLTRIH 184
LD+ + I GL++ P TT+ DAT +D++K+VEDL+RIH
Sbjct: 598 LDMGKDSVGQIVNGLKMPLLNIIRVITLLPVPSSETTELVDATAEDVLKLVEDLSRIH 655
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
L L ++ G ID+IQKLHIRTVPLGE+P RIAYQ + T V R++ +A
Sbjct: 193 LVLTDGNSLVIGRIDDIQKLHIRTVPLGESPSRIAYQPETNTIAVTVERLEFVDA 247
>gi|196476797|gb|ACG76262.1| damaged-DNA binding protein DDB p127 subunit [Amblyomma americanum]
Length = 74
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 110 RIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDAT 169
+I+H+FWRSF+T+ K++ GFIDGDLIESFLDL+ M+ + G+Q+ GS K+DAT
Sbjct: 1 KIDHAFWRSFSTERKTEQPVGFIDGDLIESFLDLSRDKMQEVVQGIQM-DDGSGMKKDAT 59
Query: 170 VDDIIKIVEDLTRIH 184
VDD+IKI+E+L+RIH
Sbjct: 60 VDDLIKIIEELSRIH 74
>gi|324502823|gb|ADY41238.1| DNA damage-binding protein 1, partial [Ascaris suum]
Length = 1129
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 69/104 (66%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ Q++P+ Y F+ +L+ R+A ++ RIEH +R+F +D +++ GFIDGDL+E
Sbjct: 1026 GVIVQLTPQFYDFVHELETRIAAVTKNCMRIEHGQYRTFESDGRTEQSVGFIDGDLVEGL 1085
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ ++ + GL + ++ AT+++++K+VEDL RIH
Sbjct: 1086 LDMSRDSVEKLIDGLTLPAAAGQEQKVATIEEVLKVVEDLARIH 1129
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 3 QVTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+ A+ T L + T G ID+IQKLHIRTVPLGE+ RIAYQ + T ++
Sbjct: 666 HMCALNSATYTDSLVMTDGQTLVIGRIDDIQKLHIRTVPLGESVSRIAYQPETGTIAILV 725
Query: 63 TRIDIQEADA 72
R + +AD
Sbjct: 726 QRNEFVDADG 735
>gi|384080885|dbj|BAM11105.1| damage-specific DNA binding protein 1, 127kDa, partial
[Siebenrockiella crassicollis]
Length = 364
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 20 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGG 77
>gi|384500266|gb|EIE90757.1| hypothetical protein RO3G_15468 [Rhizopus delemar RA 99-880]
Length = 1057
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ G++ +SPE Y L+ +Q + + ++ +G + H+ WR+ N + + FIDGDLIE
Sbjct: 956 AIGVIADLSPERYKLLYQMQCNMCRVVKGIGELSHTDWRNVNIMYRKEEAMNFIDGDLIE 1015
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL+ + M+++ GL K D TV+D+ K+VE+L IH
Sbjct: 1016 SFLDLSSQQMQNVVDGLH-----GGRKLDLTVEDLCKVVEELMSIH 1056
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRI 65
+AL T G ++EIQKLHI +P + PRRI YQES+++FG+IT R+
Sbjct: 654 VALITKEGLIIGQMEEIQKLHITKIPTIDTPRRIVYQESTKSFGIITERM 703
>gi|432089478|gb|ELK23419.1| DNA damage-binding protein 1 [Myotis davidii]
Length = 1047
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGG 748
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 117 RSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKI 176
RSF+T+ K++ GFIDGDLIESFLD++ M+ + LQ GS KR+AT DD+IK+
Sbjct: 981 RSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYD-DGSGMKREATADDLIKV 1039
Query: 177 VEDLTRIH 184
VE+LTRIH
Sbjct: 1040 VEELTRIH 1047
>gi|221040048|dbj|BAH11787.1| unnamed protein product [Homo sapiens]
Length = 1092
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
GLVT +S Y+ L D+Q RL + I+SVG+IEHSF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSF 1072
>gi|16197726|emb|CAC94909.1| damaged-DNA recognition protein 1 [Mus musculus]
Length = 994
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>gi|41055225|ref|NP_956920.1| DNA damage-binding protein 1 [Danio rerio]
gi|34784892|gb|AAH56837.1| Zgc:63840 [Danio rerio]
Length = 897
Score = 85.5 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/58 (65%), Positives = 49/58 (84%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+P+RI YQE SQ FGV+++R+++Q+A +
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPKRICYQEVSQCFGVLSSRVEMQDASGT 748
>gi|148709424|gb|EDL41370.1| damage specific DNA binding protein 1 [Mus musculus]
Length = 968
Score = 85.1 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/55 (69%), Positives = 48/55 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDS 745
>gi|297267724|ref|XP_001082958.2| PREDICTED: DNA damage-binding protein 1 [Macaca mulatta]
Length = 1092
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 69
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Score = 46.6 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
GLVT +S Y+ L D+Q RL + I+SVG+IEHSF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSF 1072
>gi|119594339|gb|EAW73933.1| damage-specific DNA binding protein 1, 127kDa, isoform CRA_a [Homo
sapiens]
Length = 1094
Score = 84.7 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 69
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744
Score = 43.9 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHS 114
GLVT +S Y+ L D+Q RL + I+SVG+IEHS
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHS 1071
>gi|62318656|dbj|BAD95136.1| UV-damaged DNA-binding protein- like [Arabidopsis thaliana]
Length = 1088
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ +G++DGDLIESF
Sbjct: 996 GVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ G+ D V+++ K VE+LTR+H
Sbjct: 1056 LDLSRGKMEEISKGM-----------DVQVEELCKRVEELTRLH 1088
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIRT+P+GE RRI +QE ++TF + R + A+ S +
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLRNE-PSAEESES 743
Query: 76 SFV 78
FV
Sbjct: 744 HFV 746
>gi|15233515|ref|NP_193842.1| DNA damage-binding protein 1b [Arabidopsis thaliana]
gi|73620956|sp|O49552.2|DDB1B_ARATH RecName: Full=DNA damage-binding protein 1b; AltName: Full=UV-damaged
DNA-binding protein 1b; Short=DDB1b
gi|110739453|dbj|BAF01636.1| UV-damaged DNA-binding protein- like [Arabidopsis thaliana]
gi|332659001|gb|AEE84401.1| DNA damage-binding protein 1b [Arabidopsis thaliana]
Length = 1088
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ +G++DGDLIESF
Sbjct: 996 GVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ G+ D V+++ K VE+LTR+H
Sbjct: 1056 LDLSRGKMEEISKGM-----------DVQVEELCKRVEELTRLH 1088
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIRT+P+GE RRI +QE ++TF + R + A+ S +
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLRNE-PSAEESES 743
Query: 76 SFV 78
FV
Sbjct: 744 HFV 746
>gi|2911067|emb|CAA17529.1| UV-damaged DNA-binding protein-like [Arabidopsis thaliana]
gi|7268907|emb|CAB79110.1| UV-damaged DNA-binding protein-like [Arabidopsis thaliana]
Length = 1102
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ +G++DGDLIESF
Sbjct: 1010 GVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESF 1069
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ G+ D V+++ K VE+LTR+H
Sbjct: 1070 LDLSRGKMEEISKGM-----------DVQVEELCKRVEELTRLH 1102
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIRT+P+GE RRI +QE ++TF + R + A+ S +
Sbjct: 699 LAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLRNE-PSAEESES 757
Query: 76 SFV 78
FV
Sbjct: 758 HFV 760
>gi|256088964|ref|XP_002580590.1| DNA repair protein xp-E [Schistosoma mansoni]
Length = 1329
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 12/116 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GL+ Q+SP L++FL +++ RL+ + VG H WR+F D + F+DGDLIE+
Sbjct: 1214 GLLVQVSPVLFAFLKEVEFRLSNLVVPVGGFSHDTWRAFKADREIKMAHNFVDGDLIETV 1273
Query: 141 LDLNIKDMKSIATGLQIT-------PPGSTT-----KRDATVDDIIKIVEDLTRIH 184
DL++ D + GL+I GST R+ TV+D++K+VE+++R+H
Sbjct: 1274 TDLSMDDKAKLVKGLRIPVNMNEFGTAGSTCTTDPETRECTVEDLVKVVEEMSRLH 1329
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
+AL T + G++DEIQKLH+RT+PL E P+R+A Q + + GVIT R
Sbjct: 763 IALVTPTALIIGSVDEIQKLHVRTLPLEETPKRLALQSETSSLGVITYR 811
>gi|353232348|emb|CCD79703.1| putative dna repair protein xp-E [Schistosoma mansoni]
Length = 1329
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 12/116 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GL+ Q+SP L++FL +++ RL+ + VG H WR+F D + F+DGDLIE+
Sbjct: 1214 GLLVQVSPVLFAFLKEVEFRLSNLVVPVGGFSHDTWRAFKADREIKMAHNFVDGDLIETV 1273
Query: 141 LDLNIKDMKSIATGLQIT-------PPGSTT-----KRDATVDDIIKIVEDLTRIH 184
DL++ D + GL+I GST R+ TV+D++K+VE+++R+H
Sbjct: 1274 TDLSMDDKAKLVKGLRIPVNMNEFGTAGSTCTTDPETRECTVEDLVKVVEEMSRLH 1329
Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
+AL T + G++DEIQKLH+RT+PL E P+R+A Q + + GVIT R
Sbjct: 763 IALVTPTALIIGSVDEIQKLHVRTLPLEETPKRLALQSETSSLGVITYR 811
>gi|356512638|ref|XP_003525025.1| PREDICTED: DNA damage-binding protein 1a-like isoform 2 [Glycine max]
Length = 1068
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSFN + K+ F+DGDLIESF
Sbjct: 976 GVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESF 1035
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M I+ L D +V+++ K VE+LTR+H
Sbjct: 1036 LDLNRSKMDEISKAL-----------DVSVEELCKRVEELTRLH 1068
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + + + + S
Sbjct: 664 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNPASGEDSEM 723
Query: 76 SFV 78
FV
Sbjct: 724 HFV 726
>gi|356512636|ref|XP_003525024.1| PREDICTED: DNA damage-binding protein 1a-like isoform 1 [Glycine max]
Length = 1089
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSFN + K+ F+DGDLIESF
Sbjct: 997 GVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESF 1056
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M I+ L D +V+++ K VE+LTR+H
Sbjct: 1057 LDLNRSKMDEISKAL-----------DVSVEELCKRVEELTRLH 1089
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + + + + S
Sbjct: 685 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNPASGEDSEM 744
Query: 76 SFV 78
FV
Sbjct: 745 HFV 747
>gi|313238818|emb|CBY20011.1| unnamed protein product [Oikopleura dioica]
gi|313245836|emb|CBY34826.1| unnamed protein product [Oikopleura dioica]
Length = 1135
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 69/113 (61%), Gaps = 8/113 (7%)
Query: 72 ASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGF 131
S++ +V GL+ + + FL L+ ++ + IR VG+I+H WR F +D + + C+GF
Sbjct: 1031 GSVSGYV--GLLAIFPEKQWQFLSKLEAKMRKVIRGVGKIDHESWRRFESDSRMEDCKGF 1088
Query: 132 IDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+DGDLIE F DL + K + + ++T G AT DD++++V+DL R+H
Sbjct: 1089 VDGDLIEMFQDLRPEKQKEVIS--ELTMDGEP----ATHDDVVRLVDDLCRLH 1135
Score = 40.4 bits (93), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVI 61
LAL ++ G ID+IQKLH T+ L E P + + E + F +
Sbjct: 691 LALVNENALLIGKIDDIQKLHTSTIRLNETPHSVLHYEEREVFAYL 736
>gi|356525403|ref|XP_003531314.1| PREDICTED: DNA damage-binding protein 1-like isoform 2 [Glycine max]
Length = 1068
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSFN + K+ F+DGDLIESF
Sbjct: 976 GVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESF 1035
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M I+ + D +V+++ K VE+LTR+H
Sbjct: 1036 LDLNRSKMDEISKAV-----------DVSVEELCKRVEELTRLH 1068
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + + + + S
Sbjct: 664 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNPASGEDSEM 723
Query: 76 SFV 78
FV
Sbjct: 724 HFV 726
>gi|356525401|ref|XP_003531313.1| PREDICTED: DNA damage-binding protein 1-like isoform 1 [Glycine max]
Length = 1089
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSFN + K+ F+DGDLIESF
Sbjct: 997 GVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESF 1056
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M I+ + D +V+++ K VE+LTR+H
Sbjct: 1057 LDLNRSKMDEISKAV-----------DVSVEELCKRVEELTRLH 1089
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + + + + S
Sbjct: 685 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNPASGEDSEM 744
Query: 76 SFV 78
FV
Sbjct: 745 HFV 747
>gi|297799958|ref|XP_002867863.1| hypothetical protein ARALYDRAFT_492777 [Arabidopsis lyrata subsp.
lyrata]
gi|297313699|gb|EFH44122.1| hypothetical protein ARALYDRAFT_492777 [Arabidopsis lyrata subsp.
lyrata]
Length = 1088
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ + ++DGDLIESF
Sbjct: 996 GVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKSYLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ G+ D V+++ K VE+LTR+H
Sbjct: 1056 LDLSRGKMEEISKGM-----------DVQVEELCKRVEELTRLH 1088
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+A + T GTID+IQKLHIRT+P+GE RRI +QE ++TF + R
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAICCLR 733
>gi|218197365|gb|EEC79792.1| hypothetical protein OsI_21216 [Oryza sativa Indica Group]
Length = 1089
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSF+ D K+ F+DGDLIESF
Sbjct: 997 GIIASLPHEQYVFLEKLQSTLVKFIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESF 1056
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ +A G+ + V+++ K VE+LTR+H
Sbjct: 1057 LDLSRNKMEEVAKGMGV-----------PVEELSKRVEELTRLH 1089
Score = 43.1 bits (100), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGE 44
LA+A + + GTID+IQKLHIRT+PL E
Sbjct: 686 LAIAKEGELSIGTIDDIQKLHIRTIPLNE 714
>gi|115465791|ref|NP_001056495.1| Os05g0592400 [Oryza sativa Japonica Group]
gi|48475231|gb|AAT44300.1| putative DNA damage binding protein 1 [Oryza sativa Japonica Group]
gi|113580046|dbj|BAF18409.1| Os05g0592400 [Oryza sativa Japonica Group]
gi|215694552|dbj|BAG89545.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222632766|gb|EEE64898.1| hypothetical protein OsJ_19757 [Oryza sativa Japonica Group]
Length = 1090
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSF+ D K+ F+DGDLIESF
Sbjct: 998 GIIASLPHEQYVFLEKLQSTLVKFIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESF 1057
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ +A G+ + V+++ K VE+LTR+H
Sbjct: 1058 LDLSRNKMEEVAKGMGV-----------PVEELSKRVEELTRLH 1090
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + + GTID+IQKLHIRT+PL E RRI +QE S+T + + + + S
Sbjct: 686 LAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRICHQEQSRTLAFCSFKHNQTSIEESET 745
Query: 76 SFV 78
FV
Sbjct: 746 HFV 748
>gi|12082087|dbj|BAB20761.1| UV-damaged DNA binding protein [Oryza sativa Japonica Group]
Length = 1090
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSF+ D K+ F+DGDLIESF
Sbjct: 998 GIIASLPHEQYVFLEKLQSTLVKFIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESF 1057
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ +A G+ + V+++ K VE+LTR+H
Sbjct: 1058 LDLSRNKMEEVAKGMGV-----------PVEELSKRVEELTRLH 1090
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + + GTID+IQKLHIRT+PL RRI +QE S+T + + + + S
Sbjct: 686 LAIAKEGELSIGTIDDIQKLHIRTIPLDHQTRRICHQEQSRTLAFCSFKHNQTSIEESET 745
Query: 76 SFV 78
FV
Sbjct: 746 HFV 748
>gi|302769568|ref|XP_002968203.1| hypothetical protein SELMODRAFT_145521 [Selaginella moellendorffii]
gi|300163847|gb|EFJ30457.1| hypothetical protein SELMODRAFT_145521 [Selaginella moellendorffii]
Length = 1089
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G+V + E ++FL LQ LA+ I+ VG + H WRSF+++ K+ + F+DGDLIESF
Sbjct: 997 GVVASLQQEQFNFLQRLQHCLAKVIKGVGGLSHEQWRSFSSERKNADAKNFLDGDLIESF 1056
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M ++ + + +V+++ K VE++TR+H
Sbjct: 1057 LDLNRAKMDEVSAAMSV-----------SVEELCKRVEEMTRLH 1089
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 37/49 (75%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+ + T GTID+IQKLHIRTV LGE PRRI +QE ++TFG+ T R
Sbjct: 685 LAIGKEGELTIGTIDDIQKLHIRTVALGEHPRRICHQEQTRTFGLCTAR 733
>gi|302788810|ref|XP_002976174.1| hypothetical protein SELMODRAFT_151061 [Selaginella moellendorffii]
gi|300156450|gb|EFJ23079.1| hypothetical protein SELMODRAFT_151061 [Selaginella moellendorffii]
Length = 1089
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G+V + E ++FL LQ LA+ I+ VG + H WRSF+++ K+ + F+DGDLIESF
Sbjct: 997 GVVASLQQEQFNFLQRLQHCLAKVIKGVGGLSHEQWRSFSSERKNADAKNFLDGDLIESF 1056
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M ++ + + +V+++ K VE++TR+H
Sbjct: 1057 LDLNRAKMDEVSAAMSV-----------SVEELCKRVEEMTRLH 1089
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 37/49 (75%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+ + T GTID+IQKLHIRTV LGE PRRI +QE ++TFG+ T R
Sbjct: 685 LAIGKEGELTIGTIDDIQKLHIRTVALGEHPRRICHQEQTRTFGLCTAR 733
>gi|110741229|dbj|BAF02165.1| UV-damaged DNA binding factor - like protein [Arabidopsis thaliana]
Length = 727
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ F+DGDLIESF
Sbjct: 635 GVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESF 694
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V+++ K VE+LTR+H
Sbjct: 695 LDLSRNKMEDISKSMNV-----------QVEELCKRVEELTRLH 727
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LA+A + T GTID+IQKLHIRT+PLGE RRI +QE ++TFG+ +
Sbjct: 324 LAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICS 370
>gi|18377609|gb|AAL66955.1| putative UV-damaged DNA binding factor [Arabidopsis thaliana]
Length = 270
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ F+DGDLIESF
Sbjct: 178 GVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESF 237
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V+++ K VE+LTR+H
Sbjct: 238 LDLSRNKMEDISKSMNV-----------QVEELCKRVEELTRLH 270
>gi|413948669|gb|AFW81318.1| hypothetical protein ZEAMMB73_456332 [Zea mays]
Length = 674
Score = 79.0 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y+FL Q L + I+ VG + H WRSF+ D K+ F+DGDLIESF
Sbjct: 582 GIIASLPHDHYTFLEKFQSTLVKYIKGVGNMSHEQWRSFHNDKKTAEARNFLDGDLIESF 641
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ ++ + + +V+D+ KIVE+LTR+H
Sbjct: 642 LDLSRSKMEVVSKAMGV-----------SVEDLSKIVEELTRLH 674
Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID--IQEADAS 73
LA+A + + GTID+IQKLHIRT+PL E RRI +QE S+T + + + ++E++
Sbjct: 271 LAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRICHQEQSKTLAFCSFKYNQSVEESETH 330
Query: 74 L 74
L
Sbjct: 331 L 331
>gi|186511557|ref|NP_001118940.1| DNA damage-binding protein 1a [Arabidopsis thaliana]
gi|332657118|gb|AEE82518.1| DNA damage-binding protein 1a [Arabidopsis thaliana]
Length = 1067
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ F+DGDLIESF
Sbjct: 975 GVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESF 1034
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V+++ K VE+LTR+H
Sbjct: 1035 LDLSRNKMEDISKSMNV-----------QVEELCKRVEELTRLH 1067
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LA+A + T GTID+IQKLHIRT+PLGE RRI +QE ++TFG+ +
Sbjct: 664 LAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICS 710
>gi|15235577|ref|NP_192451.1| DNA damage-binding protein 1a [Arabidopsis thaliana]
gi|55976605|sp|Q9M0V3.1|DDB1A_ARATH RecName: Full=DNA damage-binding protein 1a; AltName: Full=UV-damaged
DNA-binding protein 1a; Short=DDB1a
gi|7267302|emb|CAB81084.1| UV-damaged DNA binding factor-like protein [Arabidopsis thaliana]
gi|25054828|gb|AAN71904.1| putative UV-damaged DNA binding factor [Arabidopsis thaliana]
gi|332657117|gb|AEE82517.1| DNA damage-binding protein 1a [Arabidopsis thaliana]
Length = 1088
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ F+DGDLIESF
Sbjct: 996 GVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V+++ K VE+LTR+H
Sbjct: 1056 LDLSRNKMEDISKSMNV-----------QVEELCKRVEELTRLH 1088
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LA+A + T GTID+IQKLHIRT+PLGE RRI +QE ++TFG+ +
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICS 731
>gi|224061051|ref|XP_002300334.1| predicted protein [Populus trichocarpa]
gi|222847592|gb|EEE85139.1| predicted protein [Populus trichocarpa]
Length = 1088
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSFN + K+ + F+DGDLIESF
Sbjct: 996 GVIASLPHEQYLFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M I+ ++I +V+++ K VE+LTR+H
Sbjct: 1056 LDLSRSRMDEISKAMEI-----------SVEELCKRVEELTRLH 1088
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+A + + GTID+IQKLHIR++PLGE RRI +QE S+TF + + +
Sbjct: 685 LAIAKEGELSIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFSICSMK 733
>gi|297809743|ref|XP_002872755.1| UV-damaged DNA-binding protein 1A [Arabidopsis lyrata subsp. lyrata]
gi|297318592|gb|EFH49014.1| UV-damaged DNA-binding protein 1A [Arabidopsis lyrata subsp. lyrata]
Length = 1088
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ F+DGDLIESF
Sbjct: 996 GVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V+++ K VE+LTR+H
Sbjct: 1056 LDLSRNKMEDISKSMNV-----------QVEELCKRVEELTRLH 1088
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LA+A + T GTID+IQKLHIRT+PLGE RRI +QE ++TFG+ +
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICS 731
>gi|156339124|ref|XP_001620088.1| hypothetical protein NEMVEDRAFT_v1g149219 [Nematostella vectensis]
gi|156204443|gb|EDO27988.1| predicted protein [Nematostella vectensis]
Length = 69
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
WRSF+ + K + GFIDGDLIESFLDL M+ + TGLQI G K++ TVDD++K
Sbjct: 3 WRSFSNERKMEPAHGFIDGDLIESFLDLPRARMEEVVTGLQIDDGG--MKKECTVDDLVK 60
Query: 176 IVEDLTRIH 184
VE+LTRIH
Sbjct: 61 TVEELTRIH 69
>gi|357519461|ref|XP_003630019.1| DNA damage-binding protein [Medicago truncatula]
gi|355524041|gb|AET04495.1| DNA damage-binding protein [Medicago truncatula]
Length = 1171
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSFN + K+ F+DGDLIESF
Sbjct: 1079 GVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEKKTVEARNFLDGDLIESF 1138
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL M I+ +++ +V+++ K VE+LTR+H
Sbjct: 1139 LDLKRSKMDEISKAMEV-----------SVEELAKRVEELTRLH 1171
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIRT+PLGE RRI +QE ++TF + + + + A+ S
Sbjct: 767 LAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFAICSLKYNSASAEESEM 826
Query: 76 SFV 78
FV
Sbjct: 827 HFV 829
>gi|255316764|gb|ACU01763.1| putative DNA damage binding protein [Brachypodium distachyon]
Length = 384
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF+ + K+ F+DGDLIESF
Sbjct: 292 GIIASLPHDQYVFLEKLQSILGKFIKGVGSLSHDQWRSFHNEKKTAEARNFLDGDLIESF 351
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M+ ++ G+ + +V+++ K VE+LTR+H
Sbjct: 352 LDLNRSKMEEVSKGMGV-----------SVENLSKRVEELTRLH 384
>gi|357132340|ref|XP_003567788.1| PREDICTED: DNA damage-binding protein 1a-like [Brachypodium
distachyon]
Length = 1090
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF+ + K+ F+DGDLIESF
Sbjct: 998 GIIASLPHDQYVFLEKLQSILGKFIKGVGSLSHDQWRSFHNEKKTAEARNFLDGDLIESF 1057
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M+ ++ G+ + +V+++ K VE+LTR+H
Sbjct: 1058 LDLNRSKMEEVSKGMGV-----------SVENLSKRVEELTRLH 1090
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + + GTID+IQKLHIRT+PL E RRI +QE S+T + + + + S
Sbjct: 686 LAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRICHQEQSRTLAFCSFKYNPNSMEESEA 745
Query: 76 SFV 78
F+
Sbjct: 746 HFI 748
>gi|312283457|dbj|BAJ34594.1| unnamed protein product [Thellungiella halophila]
Length = 1088
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSFN + ++ F+DGDLIESF
Sbjct: 996 GVIASLPQEQYMFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V+++ K VE+LTR+H
Sbjct: 1056 LDLSRNKMEDISKSMNV-----------QVEELCKRVEELTRLH 1088
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LA+A + T GTID+IQKLHIRT+PLGE RRI +QE ++TFG+ +
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICS 731
>gi|449435512|ref|XP_004135539.1| PREDICTED: DNA damage-binding protein 1-like [Cucumis sativus]
Length = 1093
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 13/113 (11%)
Query: 72 ASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGF 131
S+N + G++ + + Y FL LQ L + I+ VG + H WRSFN + ++ + F
Sbjct: 994 GSVNGVI--GVIASLPHDQYVFLERLQSNLRKVIKGVGGLSHEQWRSFNNEKRTAEAKNF 1051
Query: 132 IDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+DGDLIESFLDLN M+ I+ + + + +++ K VE+LTR+H
Sbjct: 1052 LDGDLIESFLDLNRSKMEEISRAMSV-----------SAEELCKRVEELTRLH 1093
Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID 66
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + R +
Sbjct: 689 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLRYN 739
>gi|168066745|ref|XP_001785293.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663100|gb|EDQ49884.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1090
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + + FL LQ+ L + I+ VG + H WRSF+ + K+ F+DGDLIESF
Sbjct: 998 GVIASLPQDQFLFLQKLQQALVKVIKGVGGLSHEQWRSFSNERKTVDARNFLDGDLIESF 1057
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ IAT L++ +V+++ K VE+LTR+H
Sbjct: 1058 LDLSRNKMEEIATSLEV-----------SVEELHKAVEELTRLH 1090
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 38/49 (77%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+ + T GTIDEIQKLHIRTVPLGE PRRIA+QE S+TF + + +
Sbjct: 685 LAIGKEGELTIGTIDEIQKLHIRTVPLGEHPRRIAHQEQSRTFAICSAK 733
>gi|255571318|ref|XP_002526608.1| DNA repair protein xp-E, putative [Ricinus communis]
gi|223534048|gb|EEF35767.1| DNA repair protein xp-E, putative [Ricinus communis]
Length = 1033
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y FL LQ L + I+ VG + H WRSFN + K+ + F+DGDLIESF
Sbjct: 941 GVIASLPHEQYIFLEKLQSNLRRVIKGVGGLSHEQWRSFNNEKKTVEAKNFLDGDLIESF 1000
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M I+ + + +V+++ K VE+LTR+H
Sbjct: 1001 LDLSRNRMDEISKAIGV-----------SVEELCKRVEELTRLH 1033
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF V + +
Sbjct: 630 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAVCSLK 678
>gi|449519304|ref|XP_004166675.1| PREDICTED: DNA damage-binding protein 1a-like [Cucumis sativus]
Length = 596
Score = 77.4 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSFN + ++ + F+DGDLIESF
Sbjct: 504 GVIASLPHDQYVFLERLQSNLRKVIKGVGGLSHEQWRSFNNEKRTAEAKNFLDGDLIESF 563
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M+ I+ + + + +++ K VE+LTR+H
Sbjct: 564 LDLNRSKMEEISRAMSV-----------SAEELCKRVEELTRLH 596
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + R
Sbjct: 192 LAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLR 240
>gi|402592185|gb|EJW86114.1| CPSF A subunit region family protein [Wuchereria bancrofti]
Length = 278
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 54/77 (70%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ Q+ P LY+FL D+Q+RLA+ + RI H+ +R+F T+ +S+A GFIDGDLIES
Sbjct: 191 GVIVQMPPVLYTFLQDVQKRLAEYAENCMRISHTQYRTFETEKRSEAPNGFIDGDLIESL 250
Query: 141 LDLNIKDMKSIATGLQI 157
LD+ ++ + GL++
Sbjct: 251 LDMGKDSVEQVVNGLKM 267
>gi|225443992|ref|XP_002280744.1| PREDICTED: DNA damage-binding protein 1 isoform 2 [Vitis vinifera]
Length = 1068
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSFN + K+ + F+DGDLIE+F
Sbjct: 976 GVIASLPHDQYVFLEKLQANLRKVIKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIETF 1035
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M I+ + + +V+++ K VE+LTR+H
Sbjct: 1036 LDLNRTRMDEISKAMAV-----------SVEELCKRVEELTRLH 1068
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + + + + S
Sbjct: 664 LAIAKEGDLTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNQSSTEDSEM 723
Query: 76 SFV 78
F+
Sbjct: 724 HFI 726
>gi|168047617|ref|XP_001776266.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672361|gb|EDQ58899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1089
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + + FL LQ+ L + I+ VG + H WRSF+ + K+ F+DGDLIESF
Sbjct: 997 GVIASLPQDKFLFLQKLQQALVKVIKGVGGLSHEQWRSFSNERKTVDARNFLDGDLIESF 1056
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ IA L+I +V+++ K VE+LTR+H
Sbjct: 1057 LDLSRNKMEEIAAPLEI-----------SVEELCKRVEELTRLH 1089
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+ + T GTID+IQKLHIRTVPLGE P RIA+QE S++F + + +
Sbjct: 685 LAIGKEGELTIGTIDDIQKLHIRTVPLGERPCRIAHQEQSRSFAICSAK 733
>gi|225443990|ref|XP_002280735.1| PREDICTED: DNA damage-binding protein 1 isoform 1 [Vitis vinifera]
Length = 1089
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSFN + K+ + F+DGDLIE+F
Sbjct: 997 GVIASLPHDQYVFLEKLQANLRKVIKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIETF 1056
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDLN M I+ + + +V+++ K VE+LTR+H
Sbjct: 1057 LDLNRTRMDEISKAMAV-----------SVEELCKRVEELTRLH 1089
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + + + + S
Sbjct: 685 LAIAKEGDLTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNQSSTEDSEM 744
Query: 76 SFV 78
F+
Sbjct: 745 HFI 747
>gi|353442065|gb|AER00318.1| xeroderma pigmentosum group E, partial [Hydra vulgaris]
Length = 156
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLV + + FL +QE+L++TI+SVG+IEH FWRSF D K+D G +DGDLIES
Sbjct: 88 GLVAGLPKNTFDFLSQVQEKLSKTIKSVGKIEHEFWRSFYNDKKTDLAVGCVDGDLIESC 147
Query: 141 LDL 143
LDL
Sbjct: 148 LDL 150
>gi|226510488|ref|NP_001145925.1| uncharacterized protein LOC100279448 [Zea mays]
gi|219884971|gb|ACL52860.1| unknown [Zea mays]
Length = 416
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF+ D K+ F+DGDLIESF
Sbjct: 324 GIIASLPHDQYIFLEKLQSTLVKYIKGVGNLSHEQWRSFHNDKKTAEARNFLDGDLIESF 383
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ ++ + + V+++ K VE+LTR+H
Sbjct: 384 LDLSRSKMEEVSKAMGV-----------PVEELSKRVEELTRLH 416
Score = 59.3 bits (142), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID--IQEADAS 73
LA+A + + GTID+IQKLHIRT+PL E RRI +QE S+T + + + ++E++
Sbjct: 13 LAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRICHQEQSRTLAFCSFKYNQSVEESETH 72
Query: 74 L 74
L
Sbjct: 73 L 73
>gi|413946716|gb|AFW79365.1| hypothetical protein ZEAMMB73_562969 [Zea mays]
Length = 1089
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF+ D K+ F+DGDLIESF
Sbjct: 997 GIIASLPHDQYIFLEKLQSTLVKYIKGVGNLSHEQWRSFHNDKKTAEARNFLDGDLIESF 1056
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ ++ + + V+++ K VE+LTR+H
Sbjct: 1057 LDLSRSKMEEVSKAMGV-----------PVEELSKRVEELTRLH 1089
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID--IQEADAS 73
LA+A + + GTID+IQKLHIRT+PL E RRI +QE S+T + + + ++E++
Sbjct: 686 LAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRICHQEQSRTLAFCSFKYNQSVEESETH 745
Query: 74 L 74
L
Sbjct: 746 L 746
>gi|302837243|ref|XP_002950181.1| UV-damaged DNA binding complex subunit 1 protein [Volvox carteri f.
nagariensis]
gi|300264654|gb|EFJ48849.1| UV-damaged DNA binding complex subunit 1 protein [Volvox carteri f.
nagariensis]
Length = 1104
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A++ T GT DEIQKLH+R VPLGE PRRIA+ E ++ GV+T R+D +D S
Sbjct: 729 LAVASEGALTIGTADEIQKLHVRAVPLGENPRRIAHHEGARMLGVLTMRLD---SDGSER 785
Query: 76 SFV 78
SF+
Sbjct: 786 SFL 788
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ ++ P LY L LQ L Q +R VG + H W +F+ + ++ +GF+DGDLIE+F
Sbjct: 1042 GVIARLPPGLYEMLTKLQSALRQVVRGVGGLSHEAWIAFSNERRTADAKGFVDGDLIETF 1101
Query: 141 LDL 143
LDL
Sbjct: 1102 LDL 1104
>gi|303271531|ref|XP_003055127.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463101|gb|EEH60379.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1223
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/50 (66%), Positives = 42/50 (84%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRI 65
LALA++S T G ID+IQKLHIRTVPLGE PRRIA+Q +S+TF V+T+ +
Sbjct: 773 LALASESELTIGGIDDIQKLHIRTVPLGEQPRRIAHQPASRTFAVLTSHV 822
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE--GFIDGDL 136
+ G+V + ++FL LQ+ + + + VG H WRSF+ + +S E GF+DGDL
Sbjct: 1126 AIGVVASLPESTHTFLAALQKAMNKVVSGVGGFSHDAWRSFHNEHRSRLVEARGFVDGDL 1185
Query: 137 IESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183
IESFLDL + +A+ + + V+++ K +E+L RI
Sbjct: 1186 IESFLDLRPEKASEVASVVGV-----------GVEELTKRIEELVRI 1221
>gi|350537001|ref|NP_001234275.1| DNA damage-binding protein 1 [Solanum lycopersicum]
gi|350539125|ref|NP_001233864.1| UV damaged DNA binding protein 1 [Solanum lycopersicum]
gi|55976440|sp|Q6QNU4.1|DDB1_SOLLC RecName: Full=DNA damage-binding protein 1; AltName: Full=High
pigmentation protein 1; AltName: Full=UV-damaged
DNA-binding protein 1
gi|38455768|gb|AAR20885.1| UV damaged DNA binding protein 1 [Solanum lycopersicum]
gi|42602165|gb|AAS21683.1| UV-damaged DNA binding protein 1 [Solanum lycopersicum]
Length = 1090
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF + K+ + F+DGDLIESF
Sbjct: 998 GVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESF 1057
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V++++K VE+LTR+H
Sbjct: 1058 LDLSRNRMEEISKAMSV-----------PVEELMKRVEELTRLH 1090
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTIDEIQKLHIR++PLGE RRI++QE ++TF + + + AD
Sbjct: 685 LAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPEM 744
Query: 76 SFV 78
FV
Sbjct: 745 HFV 747
>gi|358338734|dbj|GAA31211.2| DNA damage-binding protein 1, partial [Clonorchis sinensis]
Length = 1515
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S GL+ Q+SP L++FL +++ RLA+ + VG H WR+F + F+DGDLIE
Sbjct: 1198 SIGLIIQVSPVLFAFLKEIESRLAKLVNPVGGFAHDMWRAFKAERIVRMAHNFVDGDLIE 1257
Query: 139 SFLDLNIKDMKSIATGLQI 157
+ LDL+ +D + GL+I
Sbjct: 1258 TLLDLSSEDRAKLVKGLRI 1276
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 1 MQQVTAVKKVTLAFH---LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQT 57
M++V + + AF+ +AL T + G++DEIQKLH+RTVPL E P+R+A Q+ + +
Sbjct: 730 MKEVNFMAPLNGAFYRDCIALVTPTALVIGSVDEIQKLHVRTVPLEETPKRLALQDETGS 789
Query: 58 FGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFL 94
GVIT R ++ + + S+ ++Q P+ S L
Sbjct: 790 LGVITYRQEVFQEGSGFKPVRSSISLSQKVPKSTSRL 826
>gi|55976392|sp|Q6E7D1.1|DDB1_SOLCE RecName: Full=DNA damage-binding protein 1; AltName: Full=UV-damaged
DNA-binding protein 1
gi|49484911|gb|AAT66742.1| UV-damaged DNA binding protein 1 [Solanum cheesmaniae]
Length = 1095
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF + K+ + F+DGDLIESF
Sbjct: 1003 GVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESF 1062
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V++++K VE+LTR+H
Sbjct: 1063 LDLSRNRMEEISKAMSV-----------PVEELMKRVEELTRLH 1095
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTIDEIQKLHIR++PLGE RRI++QE ++TF + + + AD
Sbjct: 690 LAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPEM 749
Query: 76 SFV 78
FV
Sbjct: 750 HFV 752
>gi|328700785|ref|XP_001945395.2| PREDICTED: DNA damage-binding protein 1-like [Acyrthosiphon pisum]
Length = 1072
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 69
L LATD+ G ID +K H+RT+PLGE+PRRIAYQE+S+TFG+IT + +I++
Sbjct: 710 LILATDTAIIIGVIDMEKKHHVRTIPLGESPRRIAYQEASKTFGIITIKKNIKD 763
>gi|452824086|gb|EME31091.1| DNA damage-binding protein 1 isoform 2 [Galdieria sulphuraria]
Length = 1150
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 17/121 (14%)
Query: 64 RIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDV 123
R ++ A+ +L G++ I + + FL LQ L + I+ VG I+H WR F ++
Sbjct: 1047 RFNLGTANGAL------GVIASIDEKTFQFLHSLQTALNEVIKGVGGIQHEDWRRFTSER 1100
Query: 124 KSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183
+ + F+DGDLIE FLDL+ M+ +A K + V+++ K VE+LTRI
Sbjct: 1101 RIGDSKNFLDGDLIERFLDLSRDKMELVA-----------KKVNVPVEELAKQVEELTRI 1149
Query: 184 H 184
H
Sbjct: 1150 H 1150
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LAL T+ + GT+D IQKLHIRT+PLGE PRRIA+ ++ F V+TT+
Sbjct: 711 LALVTEGSLLLGTVDNIQKLHIRTIPLGEQPRRIAHLDTHHVFAVLTTK 759
>gi|307111604|gb|EFN59838.1| hypothetical protein CHLNCDRAFT_29381 [Chlorella variabilis]
Length = 1108
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 42/67 (62%)
Query: 1 MQQVTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+ +T+ LAL GTIDEIQKLH+RTVPLGE PRRIA+QE+S+TF V
Sbjct: 688 VSHMTSFNTAAFPDSLALGKQEALLIGTIDEIQKLHVRTVPLGEQPRRIAHQETSRTFAV 747
Query: 61 ITTRIDI 67
T+ I
Sbjct: 748 TCTQATI 754
Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIES 139
G+V + Y L LQE + + ++ VG +H+ WR+F N + + F+DGDLIE
Sbjct: 1012 GVVASLPHAQYQLLESLQEAMRKVVKGVGGFDHAQWRAFSNQHMPATPARQFVDGDLIEQ 1071
Query: 140 FLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
FLDL +++ + ATV+ + ++VE+L+R+H
Sbjct: 1072 FLDLKRDSAEAVIAAM--------AGGGATVESVTQLVEELSRLH 1108
>gi|384250802|gb|EIE24281.1| hypothetical protein COCSUDRAFT_28729 [Coccomyxa subellipsoidea
C-169]
Length = 1101
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITT 63
LALA + T G+ID+IQKLHIRTVPLGE PRR+A+QE+S++F V+T+
Sbjct: 693 LALAKEGAMTIGSIDQIQKLHIRTVPLGEQPRRLAHQEASRSFLVLTS 740
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S G++ + + + FL LQ+ L + I+ VG + H WR+F + + F+DGDLIE
Sbjct: 1004 SIGVIASLPQQQFQFLSRLQDCLRKVIKGVGGLSHVAWRTFQDEHTKMPSQNFVDGDLIE 1063
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTR 182
FLDL M+ +A + T +D++++VE+L+R
Sbjct: 1064 QFLDLKRDSMERVAREM---------GEGVTSEDLLRMVEELSR 1098
>gi|320163506|gb|EFW40405.1| UV-damaged DNA binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 1123
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 1 MQQVTAVKKVT---LAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQT 57
+++VT V T A LA+ + ++ T GTIDEIQKLH+R +PLGE PRRIAY E ++T
Sbjct: 726 LREVTHVCPFTSESFADCLAVVSSTSLTIGTIDEIQKLHVRAIPLGEMPRRIAYHEPTRT 785
Query: 58 FGVIT 62
+GV T
Sbjct: 786 YGVAT 790
>gi|452824087|gb|EME31092.1| DNA damage-binding protein 1 isoform 1 [Galdieria sulphuraria]
Length = 1128
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ I + + FL LQ L + I+ VG I+H WR F ++ + + F+DGDLIE F
Sbjct: 1036 GVIASIDEKTFQFLHSLQTALNEVIKGVGGIQHEDWRRFTSERRIGDSKNFLDGDLIERF 1095
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ +A K + V+++ K VE+LTRIH
Sbjct: 1096 LDLSRDKMELVA-----------KKVNVPVEELAKQVEELTRIH 1128
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LAL T+ + GT+D IQKLHIRT+PLGE PRRIA+ ++ F V+TT+
Sbjct: 711 LALVTEGSLLLGTVDNIQKLHIRTIPLGEQPRRIAHLDTHHVFAVLTTK 759
>gi|255080490|ref|XP_002503825.1| predicted protein [Micromonas sp. RCC299]
gi|226519092|gb|ACO65083.1| predicted protein [Micromonas sp. RCC299]
Length = 1114
Score = 69.7 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID 66
LALA++S T G ID+IQKLHIRTVPLGE PRRIA+Q ++T+ +T D
Sbjct: 706 LALASESDLTIGGIDDIQKLHIRTVPLGEQPRRIAHQPETRTYAALTENFD 756
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 14/106 (13%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK---SDACEGFIDGDLI 137
G++ + E + FL LQ L +T+ VG + H WRSF + + D GF+DGDLI
Sbjct: 1018 GVLATLPREQFEFLSALQAALNKTVSGVGGLSHDAWRSFQNEHRHRAKDGARGFVDGDLI 1077
Query: 138 ESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183
ESFLDL + + +A +++ +VD++ + VEDL R+
Sbjct: 1078 ESFLDLRPEKAREVAAAVKL-----------SVDELTRRVEDLQRL 1112
>gi|242089089|ref|XP_002440377.1| hypothetical protein SORBIDRAFT_09g030580 [Sorghum bicolor]
gi|241945662|gb|EES18807.1| hypothetical protein SORBIDRAFT_09g030580 [Sorghum bicolor]
Length = 1783
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF+ D K+ F+DGDLIESF
Sbjct: 1020 GIIASLPHDQYVFLEKLQSTLVKYIKGVGNLSHEQWRSFHNDKKTAEARNFLDGDLIESF 1079
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDD 172
LDL+ M+ ++ + + P +KR T+ D
Sbjct: 1080 LDLSRSKMEEVSKAMGV-PVEELSKRVDTILD 1110
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID--IQEADAS 73
LA+A + + GTID+IQKLHIRT+PL E RRI +QE S+T + + + ++E++
Sbjct: 686 LAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRICHQEQSKTLAFCSFKYNQSVEESETH 745
Query: 74 L 74
L
Sbjct: 746 L 746
>gi|328770638|gb|EGF80679.1| hypothetical protein BATDEDRAFT_11194 [Batrachochytrium dendrobatidis
JAM81]
Length = 1098
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 79 STGLVTQI-SPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLI 137
+ G+V +I S E L LQE L ++ VG + HS WR + T+ +S G IDGDLI
Sbjct: 995 AIGVVARIPSDETAKILSTLQEALKSVVQGVGGLIHSDWRRYRTERRSIKSAGIIDGDLI 1054
Query: 138 ESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
ESFL+L+ + T + GST T++ + K+VEDLTRIH
Sbjct: 1055 ESFLELDRSMQDHVFTQVATQVAGSTP---VTLETLTKMVEDLTRIH 1098
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 35/47 (74%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LA A+D GTI+ +QKLHI+T+ LGE PRRIAY + S TFGV+T
Sbjct: 684 LAFASDGALKIGTIETVQKLHIKTIKLGETPRRIAYHDVSHTFGVLT 730
>gi|428164905|gb|EKX33915.1| hypothetical protein GUITHDRAFT_158867 [Guillardia theta CCMP2712]
Length = 1092
Score = 68.9 bits (167), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 12/106 (11%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTD--VKSDACEGFIDGDLIE 138
G++ +S E Y FL +Q+ L I+ VG + H WRSF + + A +GFIDGDLIE
Sbjct: 997 GVIAVLSKEEYEFLLKVQDALNFVIKGVGGLRHEDWRSFENERTQGARAPKGFIDGDLIE 1056
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFLDL + M+ + + GS TV+++ + +E+L R+H
Sbjct: 1057 SFLDLRREKMEEVCHAI-----GSI-----TVEELSRKIEELQRLH 1092
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LA+AT+++ G ID+IQKLHIRTV L E PRRI +QESS+TF V T I I
Sbjct: 686 LAIATETSLRIGVIDDIQKLHIRTVYLREQPRRICHQESSKTFCVATLSIRIN 738
>gi|166240328|ref|XP_637896.2| UV-damaged DNA binding protein1 [Dictyostelium discoideum AX4]
gi|238064940|sp|B0M0P5.1|DDB1_DICDI RecName: Full=DNA damage-binding protein 1; AltName: Full=DNA repair
protein E; AltName: Full=UV-damaged DNA-binding protein 1
gi|165988543|gb|EAL64385.2| UV-damaged DNA binding protein1 [Dictyostelium discoideum AX4]
Length = 1181
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 72 ASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGF 131
AS+N S G+V IS E + F LQ+ L Q +R VG H WR+F+ D + + F
Sbjct: 1081 ASVNG--SIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNF 1138
Query: 132 IDGDLIESFLDLNIKDMKSIATGLQITP 159
IDGDLIE+FLDL + L ITP
Sbjct: 1139 IDGDLIETFLDLKYESQLKAVADLGITP 1166
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTR 64
+A+AT ++ T GTIDEIQKLHI+T+PL E RRI + E + VIT +
Sbjct: 747 MAIATTNSLTIGTIDEIQKLHIKTIPLNEEMGRRIVHLEDHSCYAVITVK 796
>gi|301121252|ref|XP_002908353.1| DNA damage-binding protein, putative [Phytophthora infestans T30-4]
gi|262103384|gb|EEY61436.1| DNA damage-binding protein, putative [Phytophthora infestans T30-4]
Length = 1150
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 40 VPLGE-APRRIAYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQ 98
V +GE AP Q S FG ++ I G++ IS + YSFL +Q
Sbjct: 1021 VDVGESAPAAPVVQNQSMLFGTVSGMI---------------GVILPISKDQYSFLLRVQ 1065
Query: 99 ERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQIT 158
+ L ++ VG H WR+F FIDGDL+ESFLDL M + ++
Sbjct: 1066 QALTHVVKGVGGFSHKDWRTFENRRSVSEARNFIDGDLVESFLDLPKPQMTKVVD--KLN 1123
Query: 159 PPGSTTKRDA-TVDDIIKIVEDLTRIH 184
G D TV+D+ +E+L ++H
Sbjct: 1124 SDGMLDGTDQFTVEDLTLRIEELVQLH 1150
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LAL+++ T GT+D+IQKLHI+T L E RRIA+ S T GV+T
Sbjct: 703 LALSSEEELTIGTVDDIQKLHIQTFHLNEWARRIAHDPESHTLGVLT 749
>gi|1399512|gb|AAC47162.1| repE [Dictyostelium discoideum]
Length = 1139
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 72 ASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGF 131
AS+N S G+V IS E + F LQ+ L Q +R VG H WR+F+ D + + F
Sbjct: 1039 ASVNG--SIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNF 1096
Query: 132 IDGDLIESFLDLNIKDMKSIATGLQITP 159
IDGDLIE+FLDL + L ITP
Sbjct: 1097 IDGDLIETFLDLKYESQLKAVADLGITP 1124
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTR 64
+A+AT ++ T GTIDEIQKLHI+T+PL E RRI + E + VIT +
Sbjct: 705 MAIATTNSLTIGTIDEIQKLHIKTIPLNEEMGRRIVHLEDHSCYAVITVK 754
>gi|325186344|emb|CCA20849.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1148
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ IS E + FL +Q L Q I+ VG HS WR+F S FIDGDLIESF
Sbjct: 1049 GVILPISKEKHEFLMRVQSALNQVIQGVGGFSHSEWRTFENRRSSIEAHNFIDGDLIESF 1108
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ +MK + L T T++ + +E+L+++H
Sbjct: 1109 LDLSKDEMKQVVDELNRDQLEGKT----TLEALAARIEELSQMH 1148
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRI 65
LALA+ S T GT+D+IQKLHI++ L E RRIA+ S+T GV T ++
Sbjct: 711 LALASGSELTIGTVDDIQKLHIQSFHLNEWARRIAHDSRSRTLGVATVKL 760
>gi|348681092|gb|EGZ20908.1| hypothetical protein PHYSODRAFT_259403 [Phytophthora sojae]
Length = 1137
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 44 EAPRRIAYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQ 103
+AP A Q S FG ++ I G++ ++ + YSFL +Q+ L Q
Sbjct: 1013 QAPIVPAAQNQSMLFGTVSGMI---------------GVILPLTKDQYSFLLRVQQALTQ 1057
Query: 104 TIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGST 163
++ VG H WR F FIDGDL+ESFLDL M + ++ G
Sbjct: 1058 VVKGVGGFSHKDWRMFENRRSVSEARNFIDGDLVESFLDLPKAQMTKVVD--KLNSDGML 1115
Query: 164 TKRDA-TVDDIIKIVEDLTRIH 184
D TV+D+ +E+L ++H
Sbjct: 1116 DGTDQFTVEDLTLRIEELAQLH 1137
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LAL+++ T GT+D+IQKLHI+T L E RRIA+ S T GV+T
Sbjct: 703 LALSSEEELTIGTVDDIQKLHIQTFHLNEWARRIAHDPESHTLGVLT 749
>gi|298711490|emb|CBJ26578.1| n/a [Ectocarpus siliculosus]
Length = 1135
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITT 63
LALA++++ T GTID+IQKLHI+ V LGEAP+RI + +S + FG+ITT
Sbjct: 710 LALASENSLTIGTIDDIQKLHIQKVSLGEAPQRITHHDSGRMFGIITT 757
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G + ++ + + FL LQ + + ++ VG H WRSF ++ FIDGDL+ES+
Sbjct: 1036 GTILTLTEDNHRFLAQLQTAMTKVVKGVGGFSHDEWRSFTNGRRTSPSSNFIDGDLVESY 1095
Query: 141 LDL 143
LD+
Sbjct: 1096 LDM 1098
>gi|17541566|ref|NP_502299.1| Protein DDB-1 [Caenorhabditis elegans]
gi|74965443|sp|Q21554.2|DDB1_CAEEL RecName: Full=DNA damage-binding protein 1; AltName:
Full=Damage-specific DNA-binding protein 1
gi|5824558|emb|CAA92824.2| Protein DDB-1 [Caenorhabditis elegans]
Length = 1134
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID--IQEADAS 73
L ++ ++ FGT+D+IQK+H+R++P+GE+ RIAYQ+S+ T+GV + R + + AS
Sbjct: 693 LVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTSTYGVCSNRTESKAERVFAS 752
Query: 74 LNSFVSTGLVTQISPELYSFLFDLQERLAQTIRS 107
N+ V+ +Q P++ S D+ E T S
Sbjct: 753 KNALVT----SQSRPKVASTRADMDESPPNTTSS 782
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ QI + FL +++ +A ++++ IEHS +R+F +++ GF+DGDL+ES
Sbjct: 1033 GMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPPSGFVDGDLVESI 1092
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ I + + + RD +I+K++EDL R+H
Sbjct: 1093 LDMDRSVAMDILSKVSDKGWDPSLPRDPV--EILKVIEDLARMH 1134
>gi|308477185|ref|XP_003100807.1| CRE-DDB-1 protein [Caenorhabditis remanei]
gi|308264619|gb|EFP08572.1| CRE-DDB-1 protein [Caenorhabditis remanei]
Length = 1154
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 66/108 (61%), Gaps = 6/108 (5%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S G+V QI + FL +++ +A ++++ IEH+ +RSF + ++ GFIDGDL+E
Sbjct: 1051 SIGMVVQIDDKWKKFLIAVEKAIADSVKNCMHIEHTTYRSFIFQKRLESPTGFIDGDLVE 1110
Query: 139 SFLDLNIKDMKSIATGLQITPPG--STTKRDATVDDIIKIVEDLTRIH 184
S LD++ +IA +++ G ++ RD +I+K++EDL R+H
Sbjct: 1111 SILDMD--RSAAIAILYKVSDKGWDASLPRDPI--EILKVIEDLARMH 1154
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
L ++ + FGT+D+IQK+H+R++P+GE+ RIAYQ SS T+GV ++R
Sbjct: 711 LVISDGISMVFGTVDDIQKIHVRSIPMGESVLRIAYQRSSGTYGVCSSR 759
>gi|357135348|ref|XP_003569272.1| PREDICTED: DNA damage-binding protein 1a-like [Brachypodium
distachyon]
Length = 1074
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
+ G++ + Y FL LQ L + I+SVG + H WRSF ++ F+DGDLIE
Sbjct: 980 AIGVIASFPYDQYVFLEKLQSVLVKFIKSVGNLSHVEWRSFYNVSRTAEARNFVDGDLIE 1039
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
SFL L+ M+ ++ + + D++ KIVE+L ++H
Sbjct: 1040 SFLSLSPSKMEEVSQVMGL-----------RADELCKIVEELRKLH 1074
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
+ LA +S + G I++I++LHIRT+PL E RRI +QE SQT + + + A++
Sbjct: 682 IVLAKESELSIGEINDIRQLHIRTIPLKEQARRICHQEQSQTLALCSFKPKFIHAES 738
>gi|281208174|gb|EFA82352.1| UV-damaged DNA binding protein1 [Polysphondylium pallidum PN500]
Length = 1054
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 35/47 (74%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT+S+ GTIDEIQKLHIR VPLGE RRI Y E ++ VIT
Sbjct: 640 IAIATESSLVIGTIDEIQKLHIRNVPLGEMARRITYVEEYHSYAVIT 686
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ IS + Y F LQ+ L + + VG + WRSF+T+ + + FIDGDLIE+F
Sbjct: 961 GVIVSISKDDYEFFEKLQKGLNRVVHGVGGLPFENWRSFSTEHMTIPSKNFIDGDLIETF 1020
Query: 141 LDLN-------IKDMK 149
LDL IKDM
Sbjct: 1021 LDLRHDKMLEAIKDMN 1036
>gi|159489018|ref|XP_001702494.1| UV-damaged DNA binding complex subunit 1 protein [Chlamydomonas
reinhardtii]
gi|158280516|gb|EDP06273.1| UV-damaged DNA binding complex subunit 1 protein [Chlamydomonas
reinhardtii]
Length = 1147
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LA+A+++ T GT D++QKLH+RTV LGE PRRIA+ E+ + GV+T R
Sbjct: 758 LAVASEAALTIGTADQLQKLHVRTVVLGEQPRRIAHHEAGRLLGVLTQR 806
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G+V ++ P LY + LQ + +R VG ++H WR+F D + GF+DGDLIES
Sbjct: 1085 GVVARLPPALYEWATKLQTAMRSVVRGVGGLDHEQWRAFANDRRCGEARGFVDGDLIESL 1144
Query: 141 LDL 143
LDL
Sbjct: 1145 LDL 1147
>gi|297740793|emb|CBI30975.3| unnamed protein product [Vitis vinifera]
Length = 1043
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIR++PLGE RRI +QE S+TF + + + + + S
Sbjct: 685 LAIAKEGDLTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNQSSTEDSEM 744
Query: 76 SFV 78
F+
Sbjct: 745 HFI 747
>gi|330792580|ref|XP_003284366.1| hypothetical protein DICPUDRAFT_86223 [Dictyostelium purpureum]
gi|325085712|gb|EGC39114.1| hypothetical protein DICPUDRAFT_86223 [Dictyostelium purpureum]
Length = 1064
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 72 ASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGF 131
AS+N S G++ IS E Y F LQ+ L + + +G H WR+F+ D + F
Sbjct: 964 ASVNG--SIGVIASISKEDYEFFSKLQKGLNRVVNGIGGFTHESWRAFSNDHHTVESRNF 1021
Query: 132 IDGDLIESFLDLNIKDMKSIATGLQIT 158
IDGDLIE F DL I+ M + + +T
Sbjct: 1022 IDGDLIEMFPDLKIESMAKVIQDMNVT 1048
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 3 QVTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTFGVI 61
VT+ +A++++S+ GTIDEIQKLHI+T+ L GE RRI + E + VI
Sbjct: 635 NVTSFNSDAFPGSMAISSESSLIIGTIDEIQKLHIKTISLNGEMARRIVHLEEYSCYAVI 694
Query: 62 TTRID 66
T + +
Sbjct: 695 TIKTN 699
>gi|302894051|ref|XP_003045906.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726833|gb|EEU40193.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1162
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 34/157 (21%)
Query: 29 IDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISP 88
I+ I+KLH VP G+ ++ R + A+ SL L I+P
Sbjct: 1039 INRIRKLH---VPAGDN-------------SIVHPRAFLASAEGSLY------LYGDIAP 1076
Query: 89 ELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLDLNIKD 147
+ L Q ++ + I + G IE WRSF N + +SD FIDG+++E FLD++
Sbjct: 1077 QYQDLLMTFQSKMEEYIHAPGNIEFKLWRSFRNENRESDGPYRFIDGEMVERFLDMDEGK 1136
Query: 148 MKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ + GL +V+D+ ++E+L R+H
Sbjct: 1137 QELVCEGL-----------GPSVEDMRNLIEELRRMH 1162
>gi|341884150|gb|EGT40085.1| CBN-DDB-1 protein [Caenorhabditis brenneri]
Length = 1134
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S GLV QI FL +++ ++ ++ +IEHS +RSF + + + GFIDGDLIE
Sbjct: 1031 SLGLVVQIDDMYKKFLLSIEKAISDAEKNCMQIEHSTYRSFTYNKRIEPPSGFIDGDLIE 1090
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVD----DIIKIVEDLTRIH 184
S LD++ + ++I +T D ++ +I+KI++DL+R H
Sbjct: 1091 SILDMD------RSRAIEILEKANTKGWDPSIPKDPVEILKIIDDLSRTH 1134
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 40/51 (78%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID 66
L ++ + FGT+D+IQK+H+RT+P+GE+ R+A+Q+SS T+GV ++R D
Sbjct: 693 LVISDGNCMVFGTVDDIQKVHVRTIPMGESVLRVAHQKSSGTYGVCSSRTD 743
>gi|412992547|emb|CCO18527.1| predicted protein [Bathycoccus prasinos]
Length = 1275
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
LALA+ T G +D+IQKLHIRTVPL E PRRIA+Q ++T V+T +
Sbjct: 835 LALASGEHLTIGAVDDIQKLHIRTVPLREQPRRIAHQPETKTLAVLTMK 883
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G+V + + L +QE + + + VG HS +RSF+ +S FIDGDL+E F
Sbjct: 1181 GVVATLPKRDFMLLNKVQEAMQKVVTGVGNFSHSDFRSFHNVQRSVEMRNFIDGDLVEIF 1240
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183
LDL+ +D ++ S + +D++K +E+++R+
Sbjct: 1241 LDLSKEDQVAV----------SELSGVSNSEDLVKKIEEISRL 1273
>gi|341893349|gb|EGT49284.1| hypothetical protein CAEBREN_30765 [Caenorhabditis brenneri]
Length = 213
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 10/110 (9%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S GLV QI FL +++ ++ ++ +IEHS +RSF + + + GFIDGDLIE
Sbjct: 110 SLGLVVQIDDMYKKFLLSIEKAISDAEKNCMQIEHSTYRSFTYNKRIEPPSGFIDGDLIE 169
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVD----DIIKIVEDLTRIH 184
S LD++ + ++I +T D ++ +I+KI++DL+R H
Sbjct: 170 SILDMD------RSRAIEILEKANTRGWDPSIPKDPVEILKIIDDLSRTH 213
>gi|402582698|gb|EJW76643.1| CPSF A subunit region family protein [Wuchereria bancrofti]
Length = 418
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
L L + G ID+IQKLHIRTVPLGE+P RIAYQ + T VI R++ +A
Sbjct: 215 LVLTDGHSLVIGRIDDIQKLHIRTVPLGESPSRIAYQPETNTIAVIVERLEFVDA 269
>gi|308808936|ref|XP_003081778.1| putative UV-damaged DNA binding factor (ISS) [Ostreococcus tauri]
gi|116060244|emb|CAL56303.1| putative UV-damaged DNA binding factor (ISS) [Ostreococcus tauri]
Length = 1282
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRI 65
LALA + T G ID+IQKLHIRT+PLG PRRIA+Q + TF V+ +
Sbjct: 876 LALAGEEDLTIGGIDDIQKLHIRTIPLGGQPRRIAHQPETNTFAVVVEHL 925
>gi|268536658|ref|XP_002633464.1| C. briggsae CBR-DDB-1 protein [Caenorhabditis briggsae]
Length = 1134
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 40/49 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 64
L ++ ++ FGT+D+IQK+HIR++P+GE+ RIAYQ+S+ T+GV ++R
Sbjct: 693 LVISDGNSMVFGTVDDIQKIHIRSIPMGESVMRIAYQKSTGTYGVCSSR 741
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 67/108 (62%), Gaps = 10/108 (9%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ QI + FL +++ ++ ++++ +IEHS +RSF + + GFIDGDL+ES
Sbjct: 1033 GMLVQIDDKWKKFLVSIEKAISDSVKNCMQIEHSTYRSFIFQKRIEPPSGFIDGDLVESI 1092
Query: 141 LDLNIKDMKSIATGL--QITPPG--STTKRDATVDDIIKIVEDLTRIH 184
LD++ +S+A + +++ G ++ RD +++K++EDL R+H
Sbjct: 1093 LDMD----RSVAIDILKKVSDKGWDASLPRDPV--EMLKVIEDLARMH 1134
>gi|145351726|ref|XP_001420218.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580451|gb|ABO98511.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1120
Score = 62.8 bits (151), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
LALA D T G ID+IQKLHIRT+PLG PRRIA+Q + TF V
Sbjct: 715 LALAGDEDLTIGGIDDIQKLHIRTIPLGGHPRRIAHQVDTNTFAV 759
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 13/105 (12%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDV--KSDACEGFIDGDLIE 138
G++ + + Y F LQ + + I+ VG ++H+ WRSF + KSD F+DGDL+E
Sbjct: 1025 GVLASLPKDAYDFAERLQTSMNKHIQGVGGLKHAEWRSFRHTLRRKSDPSRNFVDGDLVE 1084
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183
SFLDL ++ +A ++ +II+ VE+L R+
Sbjct: 1085 SFLDLKVEQADVVAADMKCDRA-----------EIIRRVEELQRL 1118
>gi|46121747|ref|XP_385428.1| hypothetical protein FG05252.1 [Gibberella zeae PH-1]
Length = 1161
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESF 140
L I+P+ L Q R+ + + ++G +E WRSF D + S+ FIDG++IE F
Sbjct: 1069 LYGDIAPQYQDLLMTFQSRMEECVLALGNVEFKLWRSFRNDNRESEGPYRFIDGEMIERF 1128
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD+ + + + GL TV+D+ ++E+L R+H
Sbjct: 1129 LDMGEEQQELVCDGL-----------GPTVEDMRNMIEELRRMH 1161
>gi|422294117|gb|EKU21417.1| uv-damaged dna-binding protein [Nannochloropsis gaditana CCMP526]
Length = 192
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 35/139 (25%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G + IS E Y F L + L + ++ VG + H +R F TD +GF+DGDLIESF
Sbjct: 54 GSILPISEEDYRFFVALTKCLNKVVKGVGGLSHEEYRRFLTDKAISDTQGFVDGDLIESF 113
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDA-------------------------------- 168
L+L + M+ + +++ G +K DA
Sbjct: 114 LELPTQRMEEVVELMRVEGVGGESKTDAALCDQAGGGKGEGKMEVVGLQEHAGKEEEKKD 173
Query: 169 ---TVDDIIKIVEDLTRIH 184
++D++ + VED+TR+H
Sbjct: 174 GVLSLDEVYRRVEDMTRLH 192
>gi|408393339|gb|EKJ72604.1| hypothetical protein FPSE_07241 [Fusarium pseudograminearum CS3096]
Length = 1161
Score = 62.4 bits (150), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESF 140
L ++P+ L Q R+ + + ++G +E WRSF D + S+ FIDG++IE F
Sbjct: 1069 LYGDVAPQYQDLLMTFQSRMEECVLALGNVEFKLWRSFRNDNRESEGPYRFIDGEMIERF 1128
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ + + + GL TV+D+ ++E+L R+H
Sbjct: 1129 LDMDEEQQELVCDGL-----------GPTVEDMRNLIEELRRMH 1161
>gi|342885673|gb|EGU85655.1| hypothetical protein FOXB_03801 [Fusarium oxysporum Fo5176]
Length = 1160
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 34/157 (21%)
Query: 29 IDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISP 88
I+ I+KLH VP+ E G++ R + A+ SL L I+P
Sbjct: 1037 INRIRKLH---VPMAEN-------------GIVHPRAFLASAEGSLY------LYGDIAP 1074
Query: 89 ELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLDLNIKD 147
+ L Q ++ + I G +E WRSF N + +S+ FIDG+++E FLD++
Sbjct: 1075 QYQDLLMTFQSKMEEYIHVPGSVEFKLWRSFRNENRESEGPFRFIDGEMVERFLDMDEGK 1134
Query: 148 MKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ + GL +++D+ ++E+L R+H
Sbjct: 1135 QELVCEGL-----------GPSIEDMRNLIEELRRMH 1160
>gi|328700760|ref|XP_003241372.1| PREDICTED: DNA damage-binding protein 1-like [Acyrthosiphon pisum]
Length = 98
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 17/107 (15%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNI 145
+SP+L+ FL D Q+ LA + G H + K GF DG+LI+SFL L +
Sbjct: 1 MSPKLFGFLSDFQKSLATVVNGAGIKPHHHQTEYTRSNK-----GFFDGNLIKSFLKLPV 55
Query: 146 KDMKSIATGLQITPPGSTT--------KRDATVDDIIKIVEDLTRIH 184
DM+S+ GL+ GS + + + D+I ++EDLTR++
Sbjct: 56 SDMESVIKGLK----GSYNCEFQIILEQSEIGIKDVINLIEDLTRLY 98
>gi|430814207|emb|CCJ28534.1| unnamed protein product [Pneumocystis jirovecii]
Length = 904
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS-- 73
+ + +++ G+ID +Q+L I+T+PLGE PRRI Y + + FGV+T ++ ++ ++ +
Sbjct: 501 IVVVSENIIKIGSIDSLQQLQIQTIPLGELPRRICYHDKQKVFGVLTIKLSLEASNGNEV 560
Query: 74 LNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSV 108
S++ VT L SF +L E Q I SV
Sbjct: 561 QTSYLKILDVTSFDGILDSFQLELNE-CVQCITSV 594
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 26 FGTIDEIQKLHIRT-VPLGE-----APRRIAYQESSQTFGVITTRIDIQEADASLNSFVS 79
F T E KL I + + GE P I Y E+S +I + D S+
Sbjct: 757 FNTTFEENKLQIISEIKWGELVNQIKPGTILYSENS----IIIPKATFVTVDGSI----- 807
Query: 80 TGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIE 138
G++ + E FL +LQ + + I +G + HS WR+F N KS+ + FIDGD +E
Sbjct: 808 -GIIFTVKREYLEFLVNLQSNMGKIISGIGCLNHSNWRAFCNRRKKSNEPKCFIDGDFVE 866
Query: 139 SFLDLN 144
F++L+
Sbjct: 867 IFINLD 872
>gi|320593036|gb|EFX05445.1| uv-damaged DNA-binding protein [Grosmannia clavigera kw1407]
Length = 1504
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESF 140
+V I+PE L +LQ +LA ++ G S +RSF N + +S F+DG+L+E F
Sbjct: 1412 MVGTIAPEAQDLLMNLQTKLAAIVKGPGNTSFSAYRSFRNAERESTEPFRFVDGELLERF 1471
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD+ K +A GL +V+D+ I+E+L R+H
Sbjct: 1472 LDVGEDVQKEVAQGL-----------GPSVEDLRNIIEELKRLH 1504
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+A+ATDS D ++ H+R + +GE RRIAY + + F +
Sbjct: 1061 IAVATDSQIKLSRTDTTKQTHVRAIDMGETIRRIAYSATERVFAL 1105
>gi|290998415|ref|XP_002681776.1| damage-specific DNA binding protein 1 [Naegleria gruberi]
gi|284095401|gb|EFC49032.1| damage-specific DNA binding protein 1 [Naegleria gruberi]
Length = 1103
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 11 TLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
+ FH+A+A +++ G IDEIQKLHI+TV L P +I +Q S++ +G++ T+ + E
Sbjct: 682 SFPFHIAIANENSILIGQIDEIQKLHIKTVQLHAQPTKICHQPSTKAYGLLITQFENPET 741
Query: 71 DA 72
A
Sbjct: 742 SA 743
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 58 FGVITTRIDIQEADASLNSFVSTGL--VTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
F ++ I+ Q +L +S G+ + Q+ PE ++F+ +Q+ ++ + + I
Sbjct: 979 FANSSSDINTQPVKTALFGTISGGIGVLAQLPPETFAFVTKIQKAMSSVVTGLANISRET 1038
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R + ++ + GFIDGD +ESFL+ + + + + L + + T+++++K
Sbjct: 1039 YRQYRSERTREDSVGFIDGDFVESFLEFDFETQQRVIEELS-----NNHQEQITLEELVK 1093
Query: 176 IVEDLTRI 183
+EDL+ +
Sbjct: 1094 NIEDLSHL 1101
>gi|219125301|ref|XP_002182922.1| damage-specific DNA binding protein 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217405716|gb|EEC45658.1| damage-specific DNA binding protein 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 1284
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 24/130 (18%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S G++ + +F L+ +A+TI+ VG H +RS +++ GF+DGDL+E
Sbjct: 1155 SLGVILGLDGRTAAFFITLERAIAKTIQPVGGFSHQLYRSCQAELRVHPAHGFVDGDLVE 1214
Query: 139 SFLDLNIKDMKSIAT------GLQITPPGST------------------TKRDATVDDII 174
+FLDL+ + M+++ G ++ ++ + + ++DD++
Sbjct: 1215 TFLDLDRRTMEAVVAEMNRDGGWEVDDFANSRSDENNDSSKDTDRINLEERSELSIDDVL 1274
Query: 175 KIVEDLTRIH 184
+VE++T +H
Sbjct: 1275 AMVEEMTMLH 1284
Score = 43.9 bits (102), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 14 FHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+ L +A DS G ID+IQKLH+ T LG AP RI + + F V
Sbjct: 815 YSLCVADDSFLRMGIIDDIQKLHVTTCRLGMAPCRIVHCADGRLFAV 861
>gi|358056808|dbj|GAA97158.1| hypothetical protein E5Q_03834 [Mixia osmundae IAM 14324]
Length = 1243
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S G++ +PE+ LF L+ + IR+ G +E WR+F + GF+DGD+I
Sbjct: 1142 SLGVIVNCTPEVSLKLFALERNMRAVIRAFGGLEQVDWRAFRAPHRVHEPVGFVDGDMIG 1201
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
F +LN + + G + + T +D+ ++V++L R+H
Sbjct: 1202 RFAELNETQVNQVLQGAS----EHSALTNTTAEDLYRLVDELQRMH 1243
>gi|387219217|gb|AFJ69317.1| dna damage-binding protein 1a, partial [Nannochloropsis gaditana
CCMP526]
Length = 383
Score = 58.9 bits (141), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LALA+++ GT+D+IQKL I+TVPLGE+PRRIA+ + V+T + + E
Sbjct: 262 LALASETGLRIGTVDDIQKLRIQTVPLGESPRRIAHIPQAGVLAVLTAKYAVGENGEEET 321
Query: 76 SFV 78
++V
Sbjct: 322 NYV 324
>gi|116195210|ref|XP_001223417.1| hypothetical protein CHGG_04203 [Chaetomium globosum CBS 148.51]
gi|88180116|gb|EAQ87584.1| hypothetical protein CHGG_04203 [Chaetomium globosum CBS 148.51]
Length = 1127
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLDLN 144
++P + L Q RLA +++ G IE +R+F N + + D F+DG+L+E FLD++
Sbjct: 1039 VAPHVQDLLLRFQSRLADVLKTAGDIEFRTYRAFRNAEREGDGPFRFVDGELLEKFLDVD 1098
Query: 145 IKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+++ GL TV+D+ +VE+L R+H
Sbjct: 1099 ETTQEAVCKGL-----------GPTVEDMRNLVEELRRMH 1127
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
+ LATD+ ID ++ H++ +P+ E RRIAY + FG+ R ++
Sbjct: 682 IVLATDNQLKISHIDRERRTHVKPLPMNEMVRRIAYSPKEKVFGLGCIRREL 733
>gi|339235331|ref|XP_003379220.1| DNA damage-binding protein 1 [Trichinella spiralis]
gi|316978142|gb|EFV61158.1| DNA damage-binding protein 1 [Trichinella spiralis]
Length = 1329
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 23 TFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRI 65
T G +DEI+KLHIR+V LGE PRRI +Q ++ GV+T RI
Sbjct: 867 CLTIGVVDEIKKLHIRSVVLGETPRRIVWQPENKLVGVLTIRI 909
Score = 43.9 bits (102), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIR-SVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
+ QI + L DLQ + + +VG I + +R + K+ GFIDGDLIE
Sbjct: 1224 IYCQIHDSHFRVLNDLQRCFSDIVPDNVGCIAYDSYRRYVVYEKNAPAFGFIDGDLIEQL 1283
Query: 141 LDLNIKDMKSIATGL----QITPPGSTTKRDATVDDIIKIVEDLTRIH 184
L++ ++ + G +I+P T II ++E+L+RIH
Sbjct: 1284 LEMPRQEAIRLINGWIAAGRISP--ERCSNITTAQQIIDLIEELSRIH 1329
>gi|402083318|gb|EJT78336.1| hypothetical protein GGTG_03437 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1155
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESF 140
LV I+P++ L +LQ+RL + ++G I +RSF N + ++D FIDG+ IE F
Sbjct: 1063 LVGAIAPQMRDLLLNLQDRLEDYVGTLGNIPFKNFRSFRNAEREADGPVRFIDGEYIERF 1122
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD+N + + L +V+D+ +VE+L +H
Sbjct: 1123 LDMNEETQSQVCRDL-----------GPSVEDMRNLVEELKNMH 1155
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LA+ATDS ID ++ H++++P+GE R IAY ++ FG+ R +I +
Sbjct: 731 LAVATDSELKISKIDPQRQSHVQSLPMGENVRSIAYSAPTRVFGLGCIRREISKG 785
>gi|358380497|gb|EHK18175.1| hypothetical protein TRIVIDRAFT_80808 [Trichoderma virens Gv29-8]
Length = 1161
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESF 140
L I+P+ L Q RL + I++ G + WR+F + +A F+DG++IE F
Sbjct: 1069 LYGDIAPKYQDLLMTFQSRLQEYIQTPGNLSFDTWRAFRNQARDGEAPFRFVDGEMIERF 1128
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ K + + GL +V+D+ ++E+L R+H
Sbjct: 1129 LDLDEKQQELVCEGL-----------GPSVEDMRNMIEELRRMH 1161
>gi|223994993|ref|XP_002287180.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976296|gb|EED94623.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1517
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S G V + ++FL LQ + +++VG I H +R+F + + GFIDGDLIE
Sbjct: 1383 SIGSVLGLDGPTFAFLACLQRAILSIVKTVGDISHEEYRAFRAERQVRPSRGFIDGDLIE 1442
Query: 139 SFLDLNIKDMKSI 151
+FLDLN M+ I
Sbjct: 1443 TFLDLNRPTMERI 1455
Score = 49.3 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 14 FHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+ L +A ++T G ID+IQKLH+ + LG PRRIAY E+ + + V
Sbjct: 1007 YSLCVADETTLRLGMIDDIQKLHVTSYKLGMTPRRIAYHEAGRVYCV 1053
>gi|328874742|gb|EGG23107.1| UV-damaged DNA binding protein1 [Dictyostelium fasciculatum]
Length = 1116
Score = 55.8 bits (133), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIES 139
G+++ IS + Y F LQ L + IR +G H WRSF N + + FIDGDL+E
Sbjct: 1022 GVISTISKQDYDFFSKLQVGLNRVIRGIGGFSHDRWRSFQNEHISNIESRNFIDGDLVEQ 1081
Query: 140 FLDLNIKDMKSIATGLQITPPGSTTKRDATVDDI 173
FL L M + + I+ + K + T+ I
Sbjct: 1082 FLHLRHDKMLEVTKDMDISIEDTYKKIETTMQSI 1115
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPL-GEAPRRIAYQESSQTFGVITTRID---IQEAD 71
+A+ATD T + G ID+IQ+LHI+ + L GE RRIA+ E+ Q + +IT R D ++E++
Sbjct: 672 IAIATDKTLSIGHIDDIQRLHIKKIDLGGEFARRIAHVEAHQCYALITIRPDESGLEESE 731
Query: 72 ASLN 75
N
Sbjct: 732 TEQN 735
>gi|358400469|gb|EHK49795.1| hypothetical protein TRIATDRAFT_146031 [Trichoderma atroviride IMI
206040]
Length = 1161
Score = 55.5 bits (132), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESF 140
L I+P+ L Q RL + I + G + WR+F N + +A F+DG++IE F
Sbjct: 1069 LYGDIAPKYQDLLMTFQSRLQEYISTPGNLSFDLWRAFRNQSREGEAPFRFVDGEMIERF 1128
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ + + GL +V+D+ ++E+L R+H
Sbjct: 1129 LDLDEGKQELVCEGL-----------GPSVEDMRNLIEELRRMH 1161
>gi|310796681|gb|EFQ32142.1| CPSF A subunit region [Glomerella graminicola M1.001]
Length = 1163
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 24/110 (21%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEH------SF--WRSFNTDVKSDACEG---FIDG 134
I E S L QERLA+ +R++G+ + SF WR F + A EG F+DG
Sbjct: 1067 IKSEYQSLLIQFQERLAEVVRALGQADGEPGSGLSFTTWRGFRNAKR--AAEGPFRFVDG 1124
Query: 135 DLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+LIE FLDL+ +++ GL TV+ + +VE+L R+H
Sbjct: 1125 ELIERFLDLDEAKQEAVVQGL-----------GPTVESMRNLVEELKRMH 1163
>gi|367044684|ref|XP_003652722.1| hypothetical protein THITE_2114471 [Thielavia terrestris NRRL 8126]
gi|346999984|gb|AEO66386.1| hypothetical protein THITE_2114471 [Thielavia terrestris NRRL 8126]
Length = 1187
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 42 LGEAPRRIAYQESSQTFGVI--------TTRIDIQEADASLNS--FVSTG---------L 82
LGE RI E T G I T + E+ +N F +TG +
Sbjct: 1036 LGEMVNRIRGIEVETTPGAIVVPKAFLGTVSLRCGESLFGMNERRFANTGQWQVEGGIYM 1095
Query: 83 VTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFL 141
+ P L Q +LA I++ G IE +R+F N + + D FIDG+L+E FL
Sbjct: 1096 FATVVPHAQDLLLRFQAKLADVIKTAGGIEFRTYRAFRNAEREGDGPFRFIDGELLERFL 1155
Query: 142 DLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
D++ + I GL TV+D+ +VE+L R+H
Sbjct: 1156 DVDEATQEVICQGL-----------GPTVEDMRNLVEELRRMH 1187
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
+ LATD+ ID ++ H++ + +GE RRIAY + FG+ + D+
Sbjct: 734 IVLATDAQIRISQIDRERRTHVKPLQMGEMVRRIAYSPREKVFGLGCIKRDL 785
>gi|322700871|gb|EFY92623.1| DNA damage-binding protein 1 [Metarhizium acridum CQMa 102]
Length = 1121
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESF 140
L +I+P+ L Q RL I + G + + WR+F N + D F+DG+++E F
Sbjct: 1029 LFGEIAPKYQDLLLTFQARLQDYIYAPGNVSFNLWRAFRNKAREGDGPFRFVDGEMVERF 1088
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ + + GL +V+D+ ++E+L R+H
Sbjct: 1089 LDLDEAKQELVCEGL-----------GPSVEDMRNMIEELRRMH 1121
>gi|380488197|emb|CCF37544.1| hypothetical protein CH063_08850 [Colletotrichum higginsianum]
Length = 271
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGR--------IEHSFWRSF-NTDVKSDACEGFIDGDL 136
I E S L QERLA ++++G+ + WR F N +D F+DG+L
Sbjct: 175 IKSEYQSLLLQFQERLADVVKTLGQAGGDSTSGLSFMAWRGFRNAKRAADGPFRFVDGEL 234
Query: 137 IESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
IE FLDL+ +++ GL TV+++ +VE+L R+H
Sbjct: 235 IERFLDLDEAKQEAVVQGL-----------GPTVENMRNLVEELKRMH 271
>gi|322706594|gb|EFY98174.1| DNA damage-binding protein 1 [Metarhizium anisopliae ARSEF 23]
Length = 1121
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESF 140
L +I+P L Q RL I + G + + WR+F N + D F+DG+++E F
Sbjct: 1029 LFGEIAPNYQDLLLTFQSRLQDYIYAPGNVSFNLWRAFRNKAREGDGPFRFVDGEMVERF 1088
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ + + GL +V+D+ ++E+L R+H
Sbjct: 1089 LDLDEAKQELVCEGL-----------GPSVEDMRNMIEELRRMH 1121
>gi|407923753|gb|EKG16818.1| Cleavage/polyadenylation specificity factor A subunit [Macrophomina
phaseolina MS6]
Length = 1129
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKS-DACEGFIDGDLIESF 140
L I+P L LQ +LA +RS G +R+F V+ D F+DGDLIE F
Sbjct: 1035 LFALIAPAKVDLLIRLQSQLADFVRSPGHYPFLRYRAFRNQVREEDEPNRFVDGDLIERF 1094
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL ++ + + G+ D V+++ +VE L R+H
Sbjct: 1095 LDLKPREQEEVVKGVYA---------DLDVEEVRSLVETLRRLH 1129
>gi|345570887|gb|EGX53705.1| hypothetical protein AOL_s00006g33 [Arthrobotrys oligospora ATCC
24927]
Length = 1133
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTD-VKSDACEGFIDGDLIESFLDLN 144
I P+ + L Q +A+ I+ +G ++ + +R++NT ++ + F+DG+L+E FLDL+
Sbjct: 1037 IHPDYFDILMKCQVNMAKVIKGIGDLDFNRYRAYNTKGIQPEEPFRFVDGELVEKFLDLD 1096
Query: 145 IKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
M+ + G ++ + TV ++ IVE L R+H
Sbjct: 1097 EDAMRMVIDGAN---DDDNSQIECTVGEMKNIVETLKRLH 1133
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
+ +ATD + IDE + H R PL + RR+A+ + + +GV T R I
Sbjct: 713 VVVATDESVFIAKIDEARTTHTRMSPLCQFARRVAFSKEKKAYGVATIRNSI 764
>gi|297815870|ref|XP_002875818.1| hypothetical protein ARALYDRAFT_323319 [Arabidopsis lyrata subsp.
lyrata]
gi|297321656|gb|EFH52077.1| hypothetical protein ARALYDRAFT_323319 [Arabidopsis lyrata subsp.
lyrata]
Length = 987
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWR-SFNTDVKSDACEGFIDGDLI 137
+ G++ + P +Y FL L++ + + IR +G F R S++ E F+DGD I
Sbjct: 893 AVGMIVSLPPVIYEFLHKLEQYMREQIRGIGCPNEDFPRMCVELQSLSESTE-FLDGDFI 951
Query: 138 ESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
ESF L+I D + +A +++ TV+DI KIVE L +H
Sbjct: 952 ESFQILDIDDQEEVAEEMEV-----------TVEDIRKIVEYLKLLH 987
>gi|340521192|gb|EGR51427.1| predicted protein [Trichoderma reesei QM6a]
Length = 1161
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESF 140
L I+P+ L Q RL I++ G + WR+F N + ++ F+DG++IE F
Sbjct: 1069 LYGDIAPKYQDLLMTFQSRLQGYIQTPGNLSFDLWRAFRNQAREGESPYRFVDGEMIERF 1128
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ + + GL V+D+ ++E+L R+H
Sbjct: 1129 LDLDESQQELVCEGL-----------GPNVEDMRNLIEELRRMH 1161
>gi|429850956|gb|ELA26181.1| DNA damage-binding protein 1 [Colletotrichum gloeosporioides Nara
gc5]
Length = 1409
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 13/89 (14%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEH-----SF--WRSF-NTDVKSDACEGFIDGDLI 137
I PE S L QERLA I+++G+ + SF WR F N +D F+DG+LI
Sbjct: 1046 IKPEYQSLLLQFQERLAGVIKTLGQADEPGAGLSFMSWRGFRNAKRSADGPFRFVDGELI 1105
Query: 138 ESFLDLNIKDMKSIATGLQITPPGSTTKR 166
E FLDL+ +++ GL G T +R
Sbjct: 1106 ERFLDLDAGRQEAVVQGL-----GPTVER 1129
Score = 37.7 bits (86), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
+ LATD ID ++ H+ +PL + RR+AY + + FG+ T R ++
Sbjct: 717 IVLATDKNVRIAHIDVERRTHVNPLPLRQTVRRVAYSPALKAFGIGTIRREL 768
>gi|346321204|gb|EGX90804.1| DNA damage-binding protein 1 [Cordyceps militaris CM01]
Length = 1160
Score = 53.1 bits (126), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESF 140
L I+P+ L LQ + Q +++ G I + WRSF N ++D F+DG+++E F
Sbjct: 1068 LYGDIAPKYQDLLITLQSNIEQYVKTTGDISFNAWRSFRNQTREADGPFRFVDGEMVERF 1127
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ ++ + + P +V+D+ ++E+L R+H
Sbjct: 1128 LDLD--ELTQVELCKDLGP---------SVEDVRNMIEELRRMH 1160
>gi|171691144|ref|XP_001910497.1| hypothetical protein [Podospora anserina S mat+]
gi|170945520|emb|CAP71632.1| unnamed protein product [Podospora anserina S mat+]
Length = 1158
Score = 52.8 bits (125), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLDLN 144
++PE L QE+LA+ + + G IE + +R+F N + + F+DG+L+E FLD +
Sbjct: 1070 VAPEAQDLLLRFQEKLARVVHTAGEIEFNCYRAFRNAEREGSEPVRFLDGELLERFLDQD 1129
Query: 145 IKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ I GL +++ + +VE+L R+H
Sbjct: 1130 EATQREICEGL-----------GPSLEHMRNVVEELRRMH 1158
Score = 43.5 bits (101), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNS 76
+ATD+ ID ++ H+R +P+GE RRIAY + FG+ + + + D + S
Sbjct: 745 VATDTQIKISKIDRTRRTHVRELPMGEMVRRIAYSPKEKVFGLGCIKRSLVDGDEVVQS 803
>gi|218188544|gb|EEC70971.1| hypothetical protein OsI_02599 [Oryza sativa Indica Group]
Length = 274
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 97 LQERLAQTIRSVGRIEHSFWRSFNTDVKS-DACEGFIDGDLIESFLDLNIKDM 148
LQ LA I+SVG + H+ WR+F TD +S +GF+D DLIESFL L M
Sbjct: 207 LQLVLADYIKSVGNLTHAQWRAFYTDGRSVGVAQGFVDNDLIESFLSLEPSKM 259
>gi|449295711|gb|EMC91732.1| hypothetical protein BAUCODRAFT_116696 [Baudoinia compniacensis UAMH
10762]
Length = 1148
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG---FIDGDLIE 138
L ISP L LQ LA+ ++S G + + WR F + V+ EG F+DG+L+E
Sbjct: 1054 LFALISPGKQDLLMRLQALLAERVKSPGHVPFAKWRGFRSQVRDMGGEGPTRFVDGELVE 1113
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+L+ ++ +A+ L V+++ +VE L R+H
Sbjct: 1114 RYLEAPVEVQVDVASEL-----------GREVEELRGMVEGLRRMH 1148
>gi|85107301|ref|XP_962347.1| hypothetical protein NCU06605 [Neurospora crassa OR74A]
gi|28923951|gb|EAA33111.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1158
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 17/98 (17%)
Query: 93 FLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG------FIDGDLIESFLDLNIK 146
L Q++LA I++VG ++ + +R+F + +G F+DG+L+E FLD++ K
Sbjct: 1072 LLLRFQDKLAAVIKTVGELDFNSYRAFRNAERGPEADGTTGPVRFLDGELLERFLDVDEK 1131
Query: 147 DMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
K I GL +V+ + +VE+L R+H
Sbjct: 1132 TQKEICEGL-----------GPSVEQMRNMVEELRRMH 1158
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNS 76
L+T++ ID ++ H+R++ LGE RRIAY S + FG+ R ++ + ++S
Sbjct: 735 LSTENEIRISEIDTARQTHVRSLELGEMVRRIAYSPSEKGFGLGCIRREVVNGEEIIHS 793
>gi|336470789|gb|EGO58950.1| hypothetical protein NEUTE1DRAFT_145059 [Neurospora tetrasperma FGSC
2508]
gi|350291855|gb|EGZ73050.1| hypothetical protein NEUTE2DRAFT_156600 [Neurospora tetrasperma FGSC
2509]
Length = 1158
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 17/98 (17%)
Query: 93 FLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG------FIDGDLIESFLDLNIK 146
L Q++LA I++VG ++ + +R+F + +G F+DG+L+E FLD++ K
Sbjct: 1072 LLLRFQDKLAAVIKTVGELDFNSYRAFRNAERGPEADGTTGPVRFLDGELLERFLDVDEK 1131
Query: 147 DMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
K I GL +V+ + +VE+L R+H
Sbjct: 1132 TQKEICEGL-----------GPSVEQMRNMVEELRRMH 1158
Score = 40.4 bits (93), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNS 76
L+T++ ID ++ H+R++ LGE RRIAY S + FG+ R ++ + ++S
Sbjct: 735 LSTENEIRISEIDTARQTHVRSLELGEMVRRIAYSPSEKGFGLGCIRREVVNGEEIIHS 793
>gi|367033707|ref|XP_003666136.1| hypothetical protein MYCTH_2310607 [Myceliophthora thermophila ATCC
42464]
gi|347013408|gb|AEO60891.1| hypothetical protein MYCTH_2310607 [Myceliophthora thermophila ATCC
42464]
Length = 1043
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 42 LGEAPRRIAYQESSQTFG-VITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQER 100
LGE RI E T G ++ R + + + F + ++P + L Q +
Sbjct: 916 LGEMVNRIREVEVETTPGALVVPRAFLGTVEGGIYMFGT------VAPHVQDLLLRFQGK 969
Query: 101 LAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITP 159
LA +++ G I +R+F N + + D F+DG+L+E FLD++ + I GL
Sbjct: 970 LADVLKTAGDIPFRSYRAFRNAEREGDGPFRFLDGELLERFLDVDEATQEIICKGL---- 1025
Query: 160 PGSTTKRDATVDDIIKIVEDLTRIH 184
+V+D+ +VE+L R+H
Sbjct: 1026 -------GPSVEDMRNMVEELRRMH 1043
Score = 37.0 bits (84), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+ALATD ID ++ H++ + + E RRIAY + FG+
Sbjct: 627 IALATDKQLKICHIDRERRTHVKPLAMNEMVRRIAYSPKEKVFGL 671
>gi|395330962|gb|EJF63344.1| hypothetical protein DICSQDRAFT_153890 [Dichomitus squalens
LYAD-421 SS1]
Length = 1263
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 7 VKKVTL---AFH--LALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGV 60
+K VTL AF LA+AT S GT+ + K+ IRT+PLG ++PRR+ Y FGV
Sbjct: 826 IKGVTLNTAAFPSCLAIATSSALLIGTVRGLDKMQIRTIPLGLDSPRRLGYHAGQGVFGV 885
Query: 61 ITTR 64
TR
Sbjct: 886 ACTR 889
>gi|302423344|ref|XP_003009502.1| DNA damage-binding protein 1b [Verticillium albo-atrum VaMs.102]
gi|261352648|gb|EEY15076.1| DNA damage-binding protein 1b [Verticillium albo-atrum VaMs.102]
Length = 1119
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRI--------EHSFWRSF-NTDVKSDACEGFI 132
++ IS E S L QERLA +R +G+ S WR F N + A F+
Sbjct: 1019 VLANISAEYQSILLPFQERLAGIVRYLGQAAPEDNEGPSFSQWRGFRNAKRMAGAPFRFV 1078
Query: 133 DGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
DG+LIE FLDL+ +++ GL +V+ + +VE+L R+H
Sbjct: 1079 DGELIERFLDLDELRQEAVVEGL-----------GPSVEAMRNMVEELRRMH 1119
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
LATD +D ++ H+ + +GE RR+AY + + FG+ T R ++
Sbjct: 696 LATDKNVRIANVDTERRTHVNPLHIGETVRRVAYSPALKAFGIGTIRKEL 745
>gi|340960602|gb|EGS21783.1| hypothetical protein CTHT_0036510 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1100
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF----NTDVKSDACEGFIDGDLIESFL 141
I+P L QE++A I++VG +++ +RS+ N + F+DG+L+E FL
Sbjct: 1009 IAPHALDLLLRFQEKVADVIKAVGDSDNANFRSYRAFKNAERVGHGPFRFLDGELLERFL 1068
Query: 142 DLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
D++ + I +GL TV+D+ IVE+L R+H
Sbjct: 1069 DVDEAIQEVICSGL-----------GPTVEDMRNIVEELRRMH 1100
Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+ALATDS +D +K ++R++PL E RRIAY + FG+
Sbjct: 674 VALATDSQIKLARLDRERKTYVRSLPLNEMVRRIAYSPKEKVFGL 718
>gi|346970653|gb|EGY14105.1| hypothetical protein VDAG_00787 [Verticillium dahliae VdLs.17]
Length = 1160
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRI--------EHSFWRSF-NTDVKSDACEGFI 132
++ IS E S L QERLA +R +G+ S WR F N + A F+
Sbjct: 1060 VLANISAEYQSILLPFQERLAGIVRYLGQAAPEDNEGPSFSQWRGFRNAKRMAAAPFRFV 1119
Query: 133 DGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
DG+LIE FLDL+ +++ GL +V+ + +VE+L R+H
Sbjct: 1120 DGELIERFLDLDELRQEAVVEGL-----------GPSVEAMRNMVEELRRMH 1160
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
LATD +D ++ H+ + +GE RR+AY + + FG+ T R ++
Sbjct: 737 LATDKNVRIANVDTERRTHVNPLHIGETVRRVAYSPALKAFGIGTIRKEL 786
>gi|396465264|ref|XP_003837240.1| similar to DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA
binding / protein binding [Leptosphaeria maculans JN3]
gi|312213798|emb|CBX93800.1| similar to DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA
binding / protein binding [Leptosphaeria maculans JN3]
Length = 1089
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDL 143
I+P L LQ LA + + G ++ + +R+F V+ D E F+DG+L+E FLDL
Sbjct: 995 IAPSHLHLLMTLQSNLAALVPAPGNMDFAKFRAFRNQVRQDEEEPKRFVDGELVERFLDL 1054
Query: 144 NIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ GL++ + + V+ + +VE L R+H
Sbjct: 1055 GAEAQAKAVQGLRL------GEAELDVEAVRGLVEGLRRLH 1089
>gi|328858656|gb|EGG07768.1| hypothetical protein MELLADRAFT_105631 [Melampsora larici-populina
98AG31]
Length = 1216
Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTRIDIQEADASL 74
+ + T G ID ++K+HI +PLG E P+RIA+ +S + +GV+ + + L
Sbjct: 765 VGVVTSEGIRLGRIDSLEKIHISKIPLGGEQPKRIAHSKSMRAYGVVCVSQKVNQQTGEL 824
Query: 75 NSFVSTGLVTQISPELYSFLFDLQ 98
+ S ++ ++ EL LFD Q
Sbjct: 825 DKGSSVKIIDDVTFEL---LFDFQ 845
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 89 ELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLDLNIKD 147
++Y L L++RL + I S+G ++ + +R F N K D CE F+DGDLI+ + + K
Sbjct: 1134 KIYKHLKALEDRLKKEILSIGGLDSTEFRKFKNKWKKVDGCE-FLDGDLIQRLYNDSFKR 1192
Query: 148 MKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
S K D I ++VE+L+ H
Sbjct: 1193 K-------------SLIKEDQDEVGIDEVVEELSWFH 1216
>gi|400600376|gb|EJP68050.1| CPSF A subunit region [Beauveria bassiana ARSEF 2860]
Length = 1174
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESF 140
L I+P+ L LQ + + +++ G I WR+F N ++D F+DG+++E F
Sbjct: 1082 LYGDIAPKYQDLLITLQTTIEKYVKTTGGISFDAWRAFRNQAREADGPFRFVDGEMVERF 1141
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL + ++ L + V+D+ ++E+L R+H
Sbjct: 1142 LDLRKQTQAALCQDLGL-----------NVEDVRNMIEELRRMH 1174
>gi|425777692|gb|EKV15851.1| UV-damaged DNA binding protein, putative [Penicillium digitatum Pd1]
gi|425779888|gb|EKV17916.1| UV-damaged DNA binding protein, putative [Penicillium digitatum
PHI26]
Length = 1140
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
Query: 40 VPLGEAPRRIAYQESSQTFGV-ITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQ 98
+ LGE RI Q V +T R + + S+ F I+PE FL LQ
Sbjct: 1010 ISLGEMVNRIRPVHIPQLCSVMVTPRAFMATVEGSIFLFAV------INPEHQDFLMTLQ 1063
Query: 99 ERLAQTIRSVGRIEHSFWRSFNTDVKSDACE-GFIDGDLIESFLDLNIKDMKSIATGLQI 157
L+Q + S+G + +R F T V+S A F+DG+LIE FL + IA +
Sbjct: 1064 AALSQKLNSLGNLSFDKFRGFRTMVRSAAAPYRFVDGELIEQFLKCTPSMQEEIAQEV-- 1121
Query: 158 TPPGSTTKRDATVDDIIKIVEDLTRIH 184
GS+ V ++ +++E L R+H
Sbjct: 1122 ---GSS-----DVGEVKRLIEALRRLH 1140
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT+ +D + I+T+P+G RR+AY S + FG+ T
Sbjct: 727 IAVATEKELKIALVDRERTTQIQTLPMGSTVRRVAYSPSEKAFGIGT 773
>gi|393212467|gb|EJC97967.1| hypothetical protein FOMMEDRAFT_162310 [Fomitiporia mediterranea
MF3/22]
Length = 1161
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 77 FVSTG---LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRS-FNTDVKSD---ACE 129
F STG +V + +L L L+ +A I+ G ++H+ WR+ N+ +SD A
Sbjct: 1050 FTSTGRIAVVVNVEDDLSRLLSSLERNMAGVIKGPGDLDHTLWRAPSNSRGRSDANGAAT 1109
Query: 130 GFIDGDLIESFLD 142
GF+DGDL+E FLD
Sbjct: 1110 GFLDGDLLERFLD 1122
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 TAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITT 63
+A+ + +AL+T G + E+ KLHIRTV +G E P ++AY +++ GV
Sbjct: 736 SAIHSESFTSSMALSTLDGLVVGRVLELDKLHIRTVFMGKENPTKLAYHSAAKLLGVGCL 795
Query: 64 RID 66
++D
Sbjct: 796 KLD 798
>gi|392566425|gb|EIW59601.1| hypothetical protein TRAVEDRAFT_167065 [Trametes versicolor
FP-101664 SS1]
Length = 1263
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTR 64
LA+AT S G + + K+ IRT+PLG + PR++AY Q FGV R
Sbjct: 844 LAIATSSALLIGNVRGVDKMQIRTIPLGMDNPRKMAYHAGQQVFGVACAR 893
>gi|167517245|ref|XP_001742963.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778062|gb|EDQ91677.1| predicted protein [Monosiga brevicollis MX1]
Length = 1670
Score = 49.3 bits (116), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 20/150 (13%)
Query: 17 ALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNS 76
AL S F FG++ + R GEA A Q+SS V TT +
Sbjct: 1053 ALFVTSRFAFGSLSLSYE---RPAEAGEAGEDGAKQQSSPPI-VFTTVLG---------- 1098
Query: 77 FVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDG 134
G++ ++ + F+ ++Q RLA +VG + H +RS + F+DG
Sbjct: 1099 --GVGMILEVQQKHLWFMHEMQRRLADMGNAVGGLTHEDYRSTKNGKRESVTPARCFVDG 1156
Query: 135 DLIESFLDLNIKDMKSIATGLQITPPGSTT 164
+LIESFL+L ++M+ + I P S+
Sbjct: 1157 NLIESFLELTPEEMEEVMKEFHI--PNSSN 1184
Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LA FG ++ +Q L IR +PL E P + Y +SS F V T
Sbjct: 743 LAYVEQDRLVFGKMENMQNLQIRKIPLDETPLGVTYHKSSGAFCVAT 789
>gi|258572939|ref|XP_002540651.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237900917|gb|EEP75318.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1144
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 64 RIDIQEADASL---NSFVST--------GLVTQISPELYSFLFDLQERLAQTIRSVGRIE 112
R+D+Q + +S +F++T G++ Q + +L L LQ LA + S G I
Sbjct: 1021 RMDLQASQSSPVIPKAFLATTDGSIYLFGVIAQFAQDL---LMRLQSALASFVASPGGIP 1077
Query: 113 HSFWRSFNTDVK-SDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVD 171
S +R+F + + +D F+DG+L+E FLD ++ +++ + RD T+
Sbjct: 1078 FSGYRAFKSATRQADEPFRFVDGELVEQFLDCPLEVQEAVLAKMD------GGGRDVTLS 1131
Query: 172 DIIKIVEDLTRIH 184
+ IVE L R+H
Sbjct: 1132 QLKDIVERLKRMH 1144
>gi|255956643|ref|XP_002569074.1| Pc21g20880 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590785|emb|CAP96985.1| Pc21g20880 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1140
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKS-DACEGFIDGDLIESF 140
L I+PE FL LQ L+ I S+G + +RSF T V+S +A F+DG+LIE F
Sbjct: 1047 LFAVINPEHQDFLMTLQASLSTKINSLGNLSFDKFRSFRTMVRSAEAPYRFVDGELIEQF 1106
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
L+ + + I + GS+ V ++ +++E L R+H
Sbjct: 1107 LNCSPSMQEEIVQEI-----GSS-----DVVEVKRMIEALRRLH 1140
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT+ +D+ + I+T+P+G RR+AY S + FG+ T
Sbjct: 724 IAVATEKELKIALVDKERTTQIQTLPMGSTVRRVAYSPSEKAFGIGT 770
>gi|315039795|ref|XP_003169275.1| hypothetical protein MGYG_08821 [Arthroderma gypseum CBS 118893]
gi|311337696|gb|EFQ96898.1| hypothetical protein MGYG_08821 [Arthroderma gypseum CBS 118893]
Length = 1076
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 42 LGEAPRRI-AYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQER 100
LGE RI + T ++ R + D S+ F GL I+P L LQ
Sbjct: 946 LGEMVNRIHPITVQTHTETAVSARALLATVDGSIYLF---GL---INPAYIDLLLRLQTA 999
Query: 101 LAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFLDLNIKDMKSIATGLQITP 159
+A S G I S +R+F T V+ SD F+DG+LIE FL + IA L
Sbjct: 1000 MASITVSPGEIPFSKYRAFRTTVRQSDEPFRFVDGELIERFLSCTPTMQEEIANRLD--- 1056
Query: 160 PGSTTKRDATVDDIIKIVEDLTRIH 184
+ TV + +++E+L R+H
Sbjct: 1057 -----DSNVTVSSLKEMIEELRRMH 1076
>gi|452838792|gb|EME40732.1| hypothetical protein DOTSEDRAFT_177898 [Dothistroma septosporum
NZE10]
Length = 1138
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 21/147 (14%)
Query: 42 LGEAPRRIAYQESSQTFG-VITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQER 100
LGE RI + + T G ++ R + + S+ F I P L +Q
Sbjct: 1009 LGEMVNRIRRIDVTPTHGALVIPRAFLATVEGSIYLFA------LIVPGKQDLLMRMQNN 1062
Query: 101 LAQTIRSVGRIEHSFWRSFNTDVKSDACEG---FIDGDLIESFLDLNIKDMKSIATGLQI 157
+A ++S G +E + +R F V+ + G F+DG+LIE FLD + I L I
Sbjct: 1063 MASLVKSPGHVEFATFRGFKNQVRDEGANGPSRFVDGELIERFLDCGQDIQEEIIRDLGI 1122
Query: 158 TPPGSTTKRDATVDDIIKIVEDLTRIH 184
+++ +VE L RIH
Sbjct: 1123 -----------ELEEARGMVESLRRIH 1138
>gi|326474493|gb|EGD98502.1| UV-damaged DNA binding protein [Trichophyton tonsurans CBS 112818]
gi|326481558|gb|EGE05568.1| UV-damaged DNA binding protein [Trichophyton equinum CBS 127.97]
Length = 1147
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 42 LGEAPRRI---AYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQ 98
LGE RI Q ++T ++ R + D S+ F GL I+P L LQ
Sbjct: 1017 LGEMVNRIHPIVVQTHTET--AVSARALLATVDGSIYLF---GL---INPNYVDLLLRLQ 1068
Query: 99 ERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFLDLNIKDMKSIATGLQI 157
+ S G I S +R+F T V+ SD F+DG+LIE FL + + I
Sbjct: 1069 TAMGSIATSPGEIPFSKYRAFRTTVRQSDEPFRFVDGELIERFLSCTLAMQQEIV----- 1123
Query: 158 TPPGSTTKRDATVDDIIKIVEDLTRIH 184
G TV + +++E+L R+H
Sbjct: 1124 ---GRLDDSTVTVSSLKEMIEELRRMH 1147
>gi|393243160|gb|EJD50676.1| hypothetical protein AURDEDRAFT_112250 [Auricularia delicata
TFB-10046 SS5]
Length = 1140
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 4/53 (7%)
Query: 29 IDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTR---IDIQEADASLNSF 77
+ ++Q+LHI+T+P+G E PRRIAY ++ FGV T + + E ++ +SF
Sbjct: 731 VKQVQRLHIKTIPMGSENPRRIAYNSHAKAFGVGTMHSQPVGVGEPESVTSSF 783
>gi|342318986|gb|EGU10938.1| DNA damage-binding protein 1b [Rhodotorula glutinis ATCC 204091]
Length = 1102
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 13 AFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA 72
AFHL T D I + VP R+ Y S+ T GVI D+ A +
Sbjct: 964 AFHLGELVTRFRTGSLGDLIGDANTTVVP------RLVYSTSAGTIGVIA---DLDAASS 1014
Query: 73 SLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFI 132
+ L DL+ + + ++ VG +E + D GFI
Sbjct: 1015 RI-------------------LSDLERNMREFVKGVGGLEQEELVAGVADKVKTPSTGFI 1055
Query: 133 DGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVD--DIIKIVEDLTRIH 184
DGD ++SFLDL+ KD++ Q+ G + TVD +I++++E++ R+H
Sbjct: 1056 DGDFVQSFLDLS-KDVQE-----QVM-QGKSEHERLTVDKAEIVRLLEEVARVH 1102
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 1 MQQVTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGE-APRRIAYQESSQTFG 59
+ V + L +AL + G +D +QK+ +RTVPL E PRRI Y S+ F
Sbjct: 708 VSSVANISHPALGDLVALVSREGVQIGRMDTVQKVDVRTVPLAEDEPRRIVYDPVSRKFC 767
Query: 60 VITTRIDI 67
V +R DI
Sbjct: 768 VACSRRDI 775
>gi|326501484|dbj|BAK02531.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 12 LAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQT 57
+ + LA+A + + G+ID++QKLHIRT+ L E R I +QE S T
Sbjct: 1 MYYSLAIAEEGELSIGSIDDVQKLHIRTILLIEQARSIFHQEQSMT 46
>gi|398391687|ref|XP_003849303.1| hypothetical protein MYCGRDRAFT_87400 [Zymoseptoria tritici IPO323]
gi|339469180|gb|EGP84279.1| hypothetical protein MYCGRDRAFT_87400 [Zymoseptoria tritici IPO323]
Length = 1143
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 93 FLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG---FIDGDLIESFLDLNIKDMK 149
L +Q ++A+ ++S G + + +R F T V+ EG F+DG+LIE FLD +
Sbjct: 1060 LLIRMQNKMAEMVQSPGHVPFAKFRGFKTQVRDMGEEGPSRFVDGELIERFLDCDEDVQA 1119
Query: 150 SIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+A L V+++ +VE L RIH
Sbjct: 1120 EVAKEL-----------GGDVEELKIMVEGLKRIH 1143
>gi|406865227|gb|EKD18269.1| CPSF A subunit region [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 1146
Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 93 FLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKS-DACEGFIDGDLIESFLDLNIKDMKSI 151
L LQE + + + ++GR++ +RSF + ++ + F+DG+LIE FLD + + I
Sbjct: 1065 LLLRLQENITECVDTLGRLDFKTYRSFKSAERTTEEPYRFVDGELIERFLDESEDMQQQI 1124
Query: 152 ATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
GL TV+ I +VE+L R+H
Sbjct: 1125 CEGLGY-----------TVEAIRDVVENLKRLH 1146
Score = 39.7 bits (91), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
L +AT + ID+ ++ H+RTV +G+ RRIAY + + FG+
Sbjct: 731 LVVATQRSLKISKIDDERQTHVRTVHIGKTVRRIAYSGAERAFGI 775
>gi|19114492|ref|NP_593580.1| damaged DNA binding protein Ddb1 [Schizosaccharomyces pombe 972h-]
gi|46395602|sp|O13807.1|DDB1_SCHPO RecName: Full=DNA damage-binding protein 1; AltName:
Full=Damage-specific DNA-binding protein 1
gi|2330717|emb|CAB11219.1| damaged DNA binding protein Ddb1 [Schizosaccharomyces pombe]
Length = 1072
Score = 45.4 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 93 FLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIA 152
L LQ+ + + I S G + H W+ + + ++ + IDG LIES L L + I
Sbjct: 986 LLLQLQDNIRKVIPSFGGLSHKEWKEYRGENETSPSD-LIDGSLIESILGLREPILNEIV 1044
Query: 153 TGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
G TK D +V D+ I+E+L ++H
Sbjct: 1045 NGGH-----EGTKLDISVQDLKSIIENLEKLH 1071
>gi|440639387|gb|ELR09306.1| hypothetical protein GMDG_03874 [Geomyces destructans 20631-21]
Length = 1138
Score = 45.4 bits (106), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 13/84 (15%)
Query: 102 AQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPP 160
A+ + + G I + +RSF N + +++ FIDG+LIE FLDL+ + + + GL
Sbjct: 1067 AENVETPGNIPFTTYRSFRNAERETEEPYRFIDGELIERFLDLDEERQEVVCKGL----- 1121
Query: 161 GSTTKRDATVDDIIKIVEDLTRIH 184
A V+++ +VE+L R+H
Sbjct: 1122 -------AKVEEVRDLVEELRRMH 1138
Score = 40.8 bits (94), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+ +AT S ID ++ H+RT+P+GE RR+ Y S + FG+
Sbjct: 726 IVVATASEIKISQIDTERRTHVRTLPMGETVRRVTYSPSEKVFGL 770
>gi|389629928|ref|XP_003712617.1| hypothetical protein MGG_16867 [Magnaporthe oryzae 70-15]
gi|351644949|gb|EHA52810.1| hypothetical protein MGG_16867 [Magnaporthe oryzae 70-15]
gi|440464739|gb|ELQ34110.1| DNA damage-binding protein 1a [Magnaporthe oryzae Y34]
Length = 1183
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRS-VGRIEHSFWRSF-NTDVKSDACEGFIDGDLIES 139
L ++P+ S L D Q + + S +G ++ + WRSF N + + E F+DG+ +E
Sbjct: 1090 LFGTVAPKFQSLLMDFQANMEAHVSSPLGELQFNQWRSFRNPEREGAGPERFLDGEFLEM 1149
Query: 140 FLDLNIKDMKSIATGLQIT 158
FLD+ I GL T
Sbjct: 1150 FLDMEENTQIDICQGLSYT 1168
>gi|440487047|gb|ELQ66855.1| DNA damage-binding protein 1a [Magnaporthe oryzae P131]
Length = 1213
Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRS-VGRIEHSFWRSF-NTDVKSDACEGFIDGDLIES 139
L ++P+ S L D Q + + S +G ++ + WRSF N + + E F+DG+ +E
Sbjct: 1120 LFGTVAPKFQSLLMDFQANMEAHVSSPLGELQFNQWRSFRNPEREGAGPERFLDGEFLEM 1179
Query: 140 FLDLNIKDMKSIATGLQIT 158
FLD+ I GL T
Sbjct: 1180 FLDMEENTQIDICQGLSYT 1198
>gi|390603312|gb|EIN12704.1| hypothetical protein PUNSTDRAFT_97523 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1268
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTR 64
L T S FT G + LH+R+VPLG + P+RI Y S GV R
Sbjct: 853 LVTGSGFTIGHFGNVAGLHVRSVPLGVDVPKRITYNNESHLLGVACIR 900
Score = 40.0 bits (92), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 77 FVSTG----LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTD---VKSDACE 129
F S+G ++ + PE+ L +L +++ I + I++ WRS T ++
Sbjct: 1157 FTSSGRIAIVIDVLDPEVSLHLTNLHRNMSKVITGLTGIQNETWRSPATSRGRTDAETSR 1216
Query: 130 GFIDGDLIESFLDL 143
GF+DGD +E+FLD+
Sbjct: 1217 GFLDGDFLEAFLDV 1230
>gi|170090007|ref|XP_001876226.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649486|gb|EDR13728.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1275
Score = 45.1 bits (105), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 11 TLAFHLALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTRID--- 66
T A L L+T + G + + KLHIR++P G + PR+IA++ S + FGV T ++
Sbjct: 848 TFASSLILSTPTGLFIGRVQGLGKLHIRSIPFGFDNPRKIAHEPSIKAFGVAFTTMEPNR 907
Query: 67 IQEADASLNSF 77
+ + + S +SF
Sbjct: 908 VNDPEISRSSF 918
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 81 GLVTQISPELYSF-LFDLQERLAQTIRSVGRIEHSFWRSFNT-----DVKSDACEGFIDG 134
G+V + E S L ++Q LA I+ VG HS +R+ T D S A GF+DG
Sbjct: 1170 GVVVDVKDEELSLQLTNMQRNLANVIQGVGGSSHSKYRAPKTTRGTSDADSGAI-GFLDG 1228
Query: 135 DLIESFLD--LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
D +E FL L+ + + + G Q P T R+A + ++EDL +H
Sbjct: 1229 DFLEQFLTHVLSPQQSEKVIQG-QSPPERLTITREA----LQMVIEDLQSLH 1275
>gi|336263557|ref|XP_003346558.1| hypothetical protein SMAC_04731 [Sordaria macrospora k-hell]
gi|380090453|emb|CCC11749.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1149
Score = 44.7 bits (104), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 93 FLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG------FIDGDLIESFLDLNIK 146
L Q++LA I++VG ++ + +R+F + +G F+DG+L+E FLD++
Sbjct: 1053 LLLRFQDKLAAVIKTVGELDFNSYRAFRNAERGPETDGTTGPVRFLDGELLERFLDVDET 1112
Query: 147 DMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTR 182
K I GL +V+ + +VE+L R
Sbjct: 1113 TQKEICEGL-----------GPSVEQMRNMVEELRR 1137
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
+ L+T++ ID ++ H+R++ LGE RRIAY S + FG+ R ++ + +
Sbjct: 714 VVLSTETEIKISEIDTARRTHVRSLELGEMVRRIAYSPSEKGFGLGCIRREMVNGEEIIQ 773
Query: 76 S 76
S
Sbjct: 774 S 774
>gi|453081643|gb|EMF09692.1| DNA damage-binding protein 1 [Mycosphaerella populorum SO2202]
Length = 1151
Score = 44.3 bits (103), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG---FIDGDLIESFLD 142
I+ + L LQ +A+ ++S G + + +R F T V+ EG F+DG++IE FL
Sbjct: 1059 IAQQYQDLLIRLQGSMAEMVKSPGFVRFNRFRGFKTQVRDMGEEGPVRFVDGEIIEGFLG 1118
Query: 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
L+ + +S+A L + G + +VE L R+
Sbjct: 1119 LSAEVQESVAKDLGVEGGGELLR---------GLVEGLRRVR 1151
Score = 37.4 bits (85), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 13 AFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
A +A+AT S ++DE + H++ +P+ E RRIAY + FG+
Sbjct: 728 ANSIAIATGSELKLSSVDEERTTHVQDLPVYETVRRIAYSSELKAFGL 775
>gi|296803967|ref|XP_002842836.1| DNA damage-binding protein 1a [Arthroderma otae CBS 113480]
gi|238846186|gb|EEQ35848.1| DNA damage-binding protein 1a [Arthroderma otae CBS 113480]
Length = 1143
Score = 43.9 bits (102), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 32 IQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISPELY 91
+ ++H TV +AP + A ++ R + D S+ F GL I+P
Sbjct: 1017 VNRIHPITV---QAPAKAA----------VSARALLATVDGSIYLF---GL---INPTYI 1057
Query: 92 SFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFLDLNIKDMKS 150
L LQ +A S G I + +R+F T V+ SD F+DG+LIE FL +
Sbjct: 1058 DLLLRLQAIMASVTVSPGEIPFTKYRAFRTTVRQSDEPFRFVDGELIERFLGCAPSTQEE 1117
Query: 151 IATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
IA+ L ++ TV + +++++L R+H
Sbjct: 1118 IASRLD--------DQNITVASLKEMIDELRRMH 1143
>gi|449549048|gb|EMD40014.1| hypothetical protein CERSUDRAFT_63520 [Ceriporiopsis subvermispora
B]
Length = 1265
Score = 43.9 bits (102), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEA-PRRIAYQESSQTFGVITTR 64
L LA S GTI + K+ IR++P G + PRRIAY + FGV R
Sbjct: 848 LVLAASSGLIIGTIRGVDKMQIRSIPFGLSDPRRIAYHSRLKLFGVGCNR 897
Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRS-FNTDVKSDA---CEGFIDGDL 136
G++ + EL L LQ +A+ I+ G H+ WR+ N ++DA GF+DGD
Sbjct: 1165 GVIIDVDDELSLPLTSLQMNMAKRIKGPGDTNHTEWRAPTNARGRTDAEASAFGFLDGDF 1224
Query: 137 IESFL 141
IE FL
Sbjct: 1225 IEQFL 1229
>gi|452979181|gb|EME78944.1| hypothetical protein MYCFIDRAFT_43692 [Pseudocercospora fijiensis
CIRAD86]
Length = 1149
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 42 LGEAPRRIAYQESSQTFG-VITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQER 100
LGE RI + G V+T + + D S+ + G Q L +Q
Sbjct: 1017 LGEMVNRIRPITVQPSPGAVVTPQAFLATTDGSIYVYCEIGKPRQ------DLLMRMQTL 1070
Query: 101 LAQTIRSVGRIEHSFWRSFNTDVKSDACEG---FIDGDLIESFLDLNIKDMKSIATGLQI 157
+A ++S G + + +R F T V+ EG F+DG+LIE FLD+ + GL
Sbjct: 1071 MADMVKSPGGVRFAKFRGFKTLVRDMGEEGPVRFVDGELIERFLDMPEVLQNEVVKGLDG 1130
Query: 158 TPPGSTTKRDATVDDIIKIVEDLTRIH 184
T ++ + +VE L RIH
Sbjct: 1131 T--------GVDLEGLRGMVEGLRRIH 1149
>gi|327301962|ref|XP_003235673.1| UV-damaged DNA binding protein [Trichophyton rubrum CBS 118892]
gi|326461015|gb|EGD86468.1| UV-damaged DNA binding protein [Trichophyton rubrum CBS 118892]
Length = 1147
Score = 43.1 bits (100), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 42 LGEAPRRI---AYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQ 98
LGE RI Q ++T ++ R + D S+ F GL I+P L LQ
Sbjct: 1017 LGEMVNRIHPIVIQTYTET--AVSARALLATVDGSIYLF---GL---INPTYIDLLLRLQ 1068
Query: 99 ERLAQTIRSVGRIEHSFWRSFNTDV-KSDACEGFIDGDLIESFLDLNIKDMKSIATGLQI 157
+ S G I S +R+F T V +SD F+DG+LIE FL S G+Q
Sbjct: 1069 TAMGSITISPGEIPFSKYRAFRTTVHQSDEPFRFVDGELIERFL--------SCTPGMQE 1120
Query: 158 TPPGSTTKRDATVDDIIKIVEDLTRIH 184
TV + +++E+L R+H
Sbjct: 1121 EIVSRLDDSTVTVSSLKEMIEELRRMH 1147
>gi|169611218|ref|XP_001799027.1| hypothetical protein SNOG_08717 [Phaeosphaeria nodorum SN15]
gi|160702249|gb|EAT83885.2| hypothetical protein SNOG_08717 [Phaeosphaeria nodorum SN15]
Length = 1140
Score = 43.1 bits (100), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG-FIDGDLIESF 140
L IS L LQ L + S G ++ + +R+F V+++ F+DG+LIE F
Sbjct: 1048 LFALISQNYLDLLITLQSNLGNLVVSPGNMDFAKFRAFKNQVRTEEEPNRFVDGELIERF 1107
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD + GL + ++DI +VE L R+H
Sbjct: 1108 LDCEEDVQRKAIEGLGV-----------ELEDIRSLVEGLRRLH 1140
>gi|169773185|ref|XP_001821061.1| UV-damaged DNA binding protein [Aspergillus oryzae RIB40]
gi|83768922|dbj|BAE59059.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1139
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 30 DEIQKLHIRT-VPLGEAPRRIAYQESSQTFGV-ITTRIDIQEADASLNSFVSTGLVTQIS 87
D+ ++L + + + LGE RI Q V +T R + + S+ F I+
Sbjct: 998 DDRRRLEVTSEISLGEMVNRIRPVNIQQLASVTVTPRAFLGTVEGSIYLFAI------IN 1051
Query: 88 PELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDLNI 145
PE FL LQ +A + S+G + + +R F + V+ +A E F+DG+LIE FL+
Sbjct: 1052 PEHQDFLMRLQATMAGKVESLGEMPFNEFRGFRSMVR-EATEPYRFVDGELIEQFLNCEP 1110
Query: 146 KDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ + I + + V ++ ++E L R+H
Sbjct: 1111 ELQEEIVNSVGMM----------NVHEVKVMIEALRRLH 1139
>gi|391865638|gb|EIT74917.1| damage-specific DNA binding complex, subunit DDB1 [Aspergillus oryzae
3.042]
Length = 1135
Score = 43.1 bits (100), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 30 DEIQKLHIRT-VPLGEAPRRIAYQESSQTFGV-ITTRIDIQEADASLNSFVSTGLVTQIS 87
D+ ++L + + + LGE RI Q V +T R + + S+ F I+
Sbjct: 994 DDRRRLEVTSEISLGEMVNRIRPVNIQQLASVTVTPRAFLGTVEGSIYLFAI------IN 1047
Query: 88 PELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDLNI 145
PE FL LQ +A + S+G + + +R F + V+ +A E F+DG+LIE FL+
Sbjct: 1048 PEHQDFLMRLQATMAGKVESLGEMPFNEFRGFRSMVR-EATEPYRFVDGELIEQFLNCEP 1106
Query: 146 KDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ + I + + V ++ ++E L R+H
Sbjct: 1107 ELQEEIVNSVGMM----------NVHEVKVMIEALRRLH 1135
>gi|238491136|ref|XP_002376805.1| UV-damaged DNA binding protein, putative [Aspergillus flavus
NRRL3357]
gi|220697218|gb|EED53559.1| UV-damaged DNA binding protein, putative [Aspergillus flavus
NRRL3357]
Length = 1117
Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 30 DEIQKLHIRT-VPLGEAPRRIAYQESSQTFGV-ITTRIDIQEADASLNSFVSTGLVTQIS 87
D+ ++L + + + LGE RI Q V +T R + + S+ F I+
Sbjct: 976 DDRRRLEVTSEISLGEMVNRIRPVNIQQLASVTVTPRAFLGTVEGSIYLFAI------IN 1029
Query: 88 PELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDLNI 145
PE FL LQ +A + S+G + + +R F + V+ +A E F+DG+LIE FL+
Sbjct: 1030 PEHQDFLMRLQATMAGKVESLGEMPFNEFRGFRSMVR-EATEPYRFVDGELIEQFLNCEP 1088
Query: 146 KDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ + I + + V ++ ++E L R+H
Sbjct: 1089 ELQEEIVNSVGMM----------NVHEVKVMIEALRRLH 1117
>gi|451856466|gb|EMD69757.1| hypothetical protein COCSADRAFT_32431 [Cochliobolus sativus ND90Pr]
Length = 1116
Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 20/130 (15%)
Query: 64 RIDI-QEADASL--NSFVST-----GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
RID+ ADA + +FV T L ISP+ + L LQ L + + G ++ +
Sbjct: 998 RIDVLTAADAVIVPKAFVGTVEGSIYLFGLISPDYQNLLMTLQSNLGSLVAAPGDMQFAK 1057
Query: 116 WRSFNTDVK-SDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDII 174
+R+F V+ + F+DG+LIE FLD++ + GL + ++++
Sbjct: 1058 FRAFKNSVREEEEPMRFVDGELIERFLDVSEEVQSKAIDGLGV-----------ELEEVK 1106
Query: 175 KIVEDLTRIH 184
++E L R+H
Sbjct: 1107 GLIEALRRLH 1116
>gi|403177920|ref|XP_003888718.1| hypothetical protein PGTG_22575 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375173263|gb|EHS64847.1| hypothetical protein PGTG_22575 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1326
Score = 42.7 bits (99), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 81 GLVTQI-SPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIES 139
GL+ +I S + L Q L++ SVG + HS +R F T+ + GF+DGD +E
Sbjct: 1178 GLIAKIHSKKKTKQLARFQSDLSKISTSVGNLAHSAYRMFKTESRKIPSMGFLDGDFLEG 1237
Query: 140 FLDLNIKDMKSI 151
LDL +++++
Sbjct: 1238 CLDLTPDEVENL 1249
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTRIDIQE 69
L LA++ G ++ +K++I + LG E PRRIA+ E + +GV+ R+++ +
Sbjct: 781 LVLASNDEIRIGKLNTTEKMNILKISLGNEQPRRIAHSEDMKAYGVVCARLELDQ 835
>gi|134113697|ref|XP_774433.1| hypothetical protein CNBG0790 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257071|gb|EAL19786.1| hypothetical protein CNBG0790 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1276
Score = 42.7 bits (99), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ ++ L DLQ +++ + G + S WR +++ GF+DGD ++ F
Sbjct: 1170 GIIGELGTRSSRTLDDLQRNMSKIWKGPGEVGWSNWRRAGSNLVGKDTAGFVDGDFVQKF 1229
Query: 141 LDLNIKD---MKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD D + I G K +A+ D+++ +E +H
Sbjct: 1230 LDTEFFDDERAQEIIQGTSSHEHVRLGKEEASRADVVRFLEATAGMH 1276
>gi|405121632|gb|AFR96400.1| hypothetical protein CNAG_03173 [Cryptococcus neoformans var. grubii
H99]
Length = 1276
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ ++ L DLQ +++ + G + S WR +++ GF+DGD ++ F
Sbjct: 1170 GIIGELGTRSSRTLDDLQRNMSKIWKGPGEVGWSNWRRAGSNLVGKDTAGFVDGDFVQKF 1229
Query: 141 LDLNIKD---MKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD D + I G K +A+ D+++ +E +H
Sbjct: 1230 LDTEFFDDGHAQEIIQGTSSHEHVRLGKEEASRADVVRFLEATAGMH 1276
>gi|58269920|ref|XP_572116.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|57228352|gb|AAW44809.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1276
Score = 42.7 bits (99), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ ++ L DLQ +++ + G + S WR +++ GF+DGD ++ F
Sbjct: 1170 GIIGELGTRSSRTLDDLQRNMSKIWKGPGEVGWSNWRRAGSNLVGKDTAGFVDGDFVQKF 1229
Query: 141 LDLNIKD---MKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD D + I G K +A+ D+++ +E +H
Sbjct: 1230 LDTEFFDDERAQEIIQGTSSHEHVRLGKEEASRADVVRFLEATAGMH 1276
>gi|391328522|ref|XP_003738737.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Metaseiulus occidentalis]
Length = 1500
Score = 42.7 bits (99), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK--SDACEGFIDGDLIE 138
G + IS + Y L LQ L + VG + +R TDV+ S+ + +DGDLI
Sbjct: 1403 GYLLPISEKTYRRLLMLQNVLNSYCQHVGGLNPKAFRIMQTDVRALSNPQKNIVDGDLIN 1462
Query: 139 SFLDLNIKDMKSIA 152
F+DLN + +A
Sbjct: 1463 VFMDLNFNEKAEVA 1476
>gi|317031116|ref|XP_001392900.2| UV-damaged DNA binding protein [Aspergillus niger CBS 513.88]
Length = 1124
Score = 42.7 bits (99), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDL 143
I+PE FL LQ +A + S+G I + +R F + V+ +A E F+DG+LIE FL
Sbjct: 1035 INPEHQDFLMRLQATMAGKVESLGNIPFNEFRGFRSMVR-EAKEPYRFVDGELIERFLTC 1093
Query: 144 NIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ I + + VD++ ++E L R+H
Sbjct: 1094 EPSLQEEIVDSVGMM----------NVDEVKIMIEALRRLH 1124
Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT +D+ + I+T+P+GE RR+AY S + FG+ T
Sbjct: 708 IAVATRHDLKIALVDKERTTQIQTLPMGETARRVAYSPSEKAFGIGT 754
>gi|331247470|ref|XP_003336363.1| DNA damage-binding protein 1 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 962
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 81 GLVTQI-SPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIES 139
GL+ +I S + L Q L++ SVG + HS +R F T+ + GF+DGD +E
Sbjct: 814 GLIAKIHSKKKTKQLARFQSDLSKISTSVGNLAHSAYRMFKTESRKIPSMGFLDGDFLEG 873
Query: 140 FLDLNIKDMKSI 151
LDL +++++
Sbjct: 874 CLDLTPDEVENL 885
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTRIDIQE 69
L LA++ G ++ +K++I + LG E PRRIA+ E + +GV+ R+++ +
Sbjct: 446 LVLASNDEIRIGKLNTTEKMNILKISLGNEQPRRIAHSEDMKAYGVVCARLELDQ 500
>gi|392578232|gb|EIW71360.1| hypothetical protein TREMEDRAFT_71141 [Tremella mesenterica DSM 1558]
Length = 1250
Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 47 RRIAYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIR 106
RR + +S V++ I D L G+V +++P L DLQ + + IR
Sbjct: 1112 RRGSLAPASSAEDVLSPEIIFATIDGRL------GIVGELTPSAARTLDDLQRNMDRYIR 1165
Query: 107 SVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFL------DLNIKDMKSIATG---LQI 157
G I +R T++ GFIDGD +++++ D+ K +K +++
Sbjct: 1166 GPGDIAWRSYRRAGTELVQRDTAGFIDGDFVQTYISSQFSPDMVEKILKGTTAPEHIMRL 1225
Query: 158 TPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ G TK AT +++ ++E L+ +H
Sbjct: 1226 SEDG--TKIPATKAEVMGVLESLSGLH 1250
>gi|358366432|dbj|GAA83053.1| UV-damaged DNA binding protein [Aspergillus kawachii IFO 4308]
Length = 1643
Score = 42.4 bits (98), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDL 143
I+PE FL LQ +A + S+G I + +R F + V+ +A E F+DG+LIE FL
Sbjct: 991 INPEHQDFLMRLQATMAGKVESLGNIPFNEFRGFRSMVR-EAKEPYRFVDGELIERFLTC 1049
Query: 144 NIKDMKSIATGLQITPPGSTTKRDATVD 171
+ I + + GS ++ ++D
Sbjct: 1050 EPSLQEEIVDSVGMMNKGSCYEQRPSID 1077
Score = 39.7 bits (91), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT +D+ + I+T+P+GE RR+AY S + FG+ T
Sbjct: 664 IAVATKHDLKIALVDKERTTQIQTLPMGETARRVAYSPSEKAFGIGT 710
>gi|350629921|gb|EHA18294.1| damage-specific DNA binding protein [Aspergillus niger ATCC 1015]
Length = 1140
Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFLDLN 144
I+PE FL LQ +A + S+G I + +R F + V+ + F+DG+LIE FL
Sbjct: 1051 INPEHQDFLMRLQATMAGKVESLGNIPFNEFRGFRSMVRETKEPYRFVDGELIERFLTCE 1110
Query: 145 IKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ I + + VD++ ++E L R+H
Sbjct: 1111 PSLQEEIVDSVGMM----------NVDEVKIMIEALRRLH 1140
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT +D+ + I+T+P+GE RR+AY S + FG+ T
Sbjct: 724 IAVATRHDLKIALVDKERTTQIQTLPMGETARRVAYSPSEKAFGIGT 770
>gi|242803623|ref|XP_002484212.1| UV-damaged DNA binding protein, putative [Talaromyces stipitatus ATCC
10500]
gi|218717557|gb|EED16978.1| UV-damaged DNA binding protein, putative [Talaromyces stipitatus ATCC
10500]
Length = 1140
Score = 42.0 bits (97), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESF 140
L I+PE FL LQ + + S G + S +R+F + V+ D F+DG+LIE F
Sbjct: 1046 LFALINPEHQDFLMRLQTAITAYVDSPGYMPFSKFRAFRSSVREGDEPFRFVDGELIERF 1105
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD + + I L + G ++ + K++E L R+H
Sbjct: 1106 LDCDRPVQEEI---LGVVGSG------YDLESVQKMIEALRRLH 1140
>gi|321260749|ref|XP_003195094.1| hypothetical protein CGB_G1120W [Cryptococcus gattii WM276]
gi|317461567|gb|ADV23307.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1276
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 94 LFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKD---MKS 150
L DLQ + + + G + S WR +++ GF+DGD ++ FLD D +
Sbjct: 1183 LDDLQRNMGKIWKGPGDVGWSNWRRAGSNLVGKDTAGFVDGDFVQKFLDTEFFDDEHARE 1242
Query: 151 IATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
I G K +A+ D+++ +E +H
Sbjct: 1243 IIQGTSSHEHVRLGKENASRADVVRFLEATASMH 1276
>gi|154286506|ref|XP_001544048.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407689|gb|EDN03230.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1158
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 16/162 (9%)
Query: 28 TIDEIQKLHIRT-VPLGEAPRRI---AYQESSQTFGVITTRIDIQEADASLNSFVSTGLV 83
T D+ ++L + + + LGE RI Q S I+ R + + S+ F G+
Sbjct: 1008 TDDDRRRLEVTSEILLGEMVNRIRPVNIQGSQGAEAAISPRAFLGTVEGSIYLF---GI- 1063
Query: 84 TQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLD 142
I+P L LQ +A + + G + + +R+F NT +++ F+DG+LIE FL
Sbjct: 1064 --INPTYQDLLMRLQSAMAGMVVTPGGMPFNKFRAFRNTIRQAEEPYRFVDGELIERFLS 1121
Query: 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+++ + I ++ G T TV+ + +VE+L R+H
Sbjct: 1122 CSVELQEEIVG--KVIADGVT---GVTVESVKGLVEELRRMH 1158
>gi|452003044|gb|EMD95501.1| hypothetical protein COCHEDRAFT_1165632 [Cochliobolus heterostrophus
C5]
Length = 1116
Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 20/130 (15%)
Query: 64 RIDI-QEADASL--NSFVST-----GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
R+D+ ADA + +FV T L ISP+ + L LQ L + + G ++ +
Sbjct: 998 RVDVLTAADAVIVPKAFVGTVEGSIYLFGLISPDYQNLLMTLQSNLGSLVAAPGDMQFAK 1057
Query: 116 WRSFNTDVK-SDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDII 174
+R+F V+ + F+DG+L+E FLD++ + GL + ++++
Sbjct: 1058 FRAFKNSVREEEEPMRFVDGELVERFLDVSEEVQHKAIDGLGV-----------ELEEVK 1106
Query: 175 KIVEDLTRIH 184
++E L R+H
Sbjct: 1107 GLIEALRRLH 1116
>gi|426195893|gb|EKV45822.1| hypothetical protein AGABI2DRAFT_72896 [Agaricus bisporus var.
bisporus H97]
Length = 1229
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 11 TLAFHLALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGV 60
+L L AT G I ++ KLHIR++P G + PR+I +Q FGV
Sbjct: 838 SLPMSLVAATAEGLHIGKIKDLNKLHIRSIPFGLDNPRKITHQPLLNAFGV 888
>gi|443918546|gb|ELU38987.1| CPSF A subunit region domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 1037
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 94 LFDLQERLAQTIRSVGRIEHSFWRS---FNTDVKSDACEGFIDGDLIESFLDLNIKDMKS 150
L L+ +L I+ +G I+H WR+ +T K G DGD I+ FL+L+ ++ K
Sbjct: 948 LTRLEMKLGDAIKGLGNIKHPEWRAPKLLHTGTKPPPRRGVTDGDFIKKFLELSSEEAKR 1007
Query: 151 I 151
I
Sbjct: 1008 I 1008
>gi|302503607|ref|XP_003013763.1| hypothetical protein ARB_07875 [Arthroderma benhamiae CBS 112371]
gi|291177329|gb|EFE33123.1| hypothetical protein ARB_07875 [Arthroderma benhamiae CBS 112371]
Length = 1148
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFLDLN 144
I+P L LQ + S G I +R+F T V+ SD F+DG+LIE FL
Sbjct: 1057 INPAYIDLLLRLQTAMGSITISPGEIPFPKYRAFRTTVRQSDEPFRFVDGELIERFL--- 1113
Query: 145 IKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
S +Q G TV + +++E+L R+H
Sbjct: 1114 -----SCTPAMQEEIVGRLDDSTVTVSSLKEMIEELRRMH 1148
>gi|347838030|emb|CCD52602.1| similar to DDB1B (Damaged DNA Binding protein 1 B); damaged DNA
binding / protein binding [Botryotinia fuckeliana]
Length = 1157
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 4 VTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
V ++ V + +AT + ID ++ H+RT+P+GE RR+AY ++F +
Sbjct: 714 VCSLNSVAYPGSVVVATINELKLAVIDNERRTHVRTLPIGETVRRVAYSAKEKSFAI 770
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 30/122 (24%)
Query: 82 LVTQISPELYSFLFDLQERLAQ-----TIR-------------SVGRIEHSFWRSFNTDV 123
L + I P+ L LQ RLA +IR S G ++ + +RS+ +
Sbjct: 1047 LFSLIPPQNQDLLMRLQSRLASLPSASSIRGSSDSTSPHQIELSPGNLDFNKYRSYISAT 1106
Query: 124 KSDACE-GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTR 182
+ + F+DG+LIE FLDL ++ + +A GL + +D+ +VE L R
Sbjct: 1107 RETSEPFRFVDGELIERFLDLEVEVQEHVAEGLGV-----------KAEDLRGMVEGLRR 1155
Query: 183 IH 184
+H
Sbjct: 1156 LH 1157
>gi|336369683|gb|EGN98024.1| hypothetical protein SERLA73DRAFT_109335 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382464|gb|EGO23614.1| hypothetical protein SERLADRAFT_449959 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1257
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 1 MQQVTAVKKV-TLAF--HLALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQ 56
+ +V+AV ++ T F + LAT + G++ + KL+IR++PLG + PRRI + S +
Sbjct: 819 LNEVSAVSRLNTTVFDSSVILATSTGLVIGSVKNLDKLYIRSIPLGYDNPRRILHVPSLR 878
Query: 57 TFGV-----ITTRIDIQEADAS 73
+ V TRID E +S
Sbjct: 879 AYAVGCISITPTRIDKAEYTSS 900
>gi|409078983|gb|EKM79345.1| hypothetical protein AGABI1DRAFT_39860 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1236
Score = 41.6 bits (96), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 11 TLAFHLALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTRIDIQE 69
+L L AT G I ++ KLHIR++P G + PR+I +Q FGV + E
Sbjct: 845 SLPMSLVAATAEGLHIGKIKDLNKLHIRSIPFGLDNPRKITHQPLLSAFGVALVYTEPAE 904
Query: 70 ADA 72
A
Sbjct: 905 IGA 907
>gi|154303693|ref|XP_001552253.1| hypothetical protein BC1G_08731 [Botryotinia fuckeliana B05.10]
Length = 1087
Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 4 VTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
V ++ V + +AT + ID ++ H+RT+P+GE RR+AY ++F +
Sbjct: 644 VCSLNSVAYPGSVVVATINELKLAVIDNERRTHVRTLPIGETVRRVAYSAKEKSFAI 700
Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 30/122 (24%)
Query: 82 LVTQISPELYSFLFDLQERLAQ-----TIR-------------SVGRIEHSFWRSFNTDV 123
L + I P+ L LQ RLA +IR S G ++ + +RS+ +
Sbjct: 977 LFSLIPPQNQDLLMRLQSRLASLPSASSIRGSSDSTSPHQIELSPGNLDFNKYRSYISAT 1036
Query: 124 KSDACE-GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTR 182
+ + F+DG+LIE FLDL ++ + +A GL + +D+ +VE L R
Sbjct: 1037 RETSEPFRFVDGELIERFLDLEVEVQEHVAEGLGV-----------KAEDLRGMVEGLRR 1085
Query: 183 IH 184
+H
Sbjct: 1086 LH 1087
Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+ +AT + ID ++ H+RT+P+GE RR+AY ++F +
Sbjct: 9 VVVATINELKLAVIDNERRTHVRTLPIGETVRRVAYSAKEKSFAI 53
>gi|70992271|ref|XP_750984.1| UV-damaged DNA binding protein [Aspergillus fumigatus Af293]
gi|66848617|gb|EAL88946.1| UV-damaged DNA binding protein, putative [Aspergillus fumigatus
Af293]
gi|159124553|gb|EDP49671.1| UV-damaged DNA binding protein, putative [Aspergillus fumigatus
A1163]
Length = 1140
Score = 41.2 bits (95), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDL 143
I+P+ FL LQ +A + VG I + +R F + V+ +A E F+DG+LIE FL
Sbjct: 1051 INPDHQDFLMRLQATIAGKVELVGNIPFNEFRGFRSMVR-EAKEPYRFVDGELIERFLTC 1109
Query: 144 NIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ I +T +VD++ ++E L R+H
Sbjct: 1110 EPSLQEEIV----------STVGKMSVDEVKGMIEALRRLH 1140
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT +D+ + I+T+P+G RR+AY S + FG+ T
Sbjct: 724 IAVATSHDLKIALVDKERTTQIQTLPIGATVRRVAYSPSEKAFGIGT 770
>gi|71016864|ref|XP_758932.1| hypothetical protein UM02785.1 [Ustilago maydis 521]
gi|46098463|gb|EAK83696.1| hypothetical protein UM02785.1 [Ustilago maydis 521]
Length = 1549
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 108 VGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLD 142
+G I HS WR+ TD + A GF+D D+++ FLD
Sbjct: 1475 IGNIAHSDWRTLRTDHRVQAPAGFLDADVLQMFLD 1509
>gi|121699866|ref|XP_001268198.1| UV-damaged DNA binding protein, putative [Aspergillus clavatus NRRL
1]
gi|119396340|gb|EAW06772.1| UV-damaged DNA binding protein, putative [Aspergillus clavatus NRRL
1]
Length = 1140
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 40 VPLGEAPRRIAYQESSQTFGV-ITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQ 98
+ LGE RI Q V +T R + + S+ F I+P+ FL LQ
Sbjct: 1010 ISLGEMVNRIRPVNIQQLTSVAVTPRAFLATVEGSIYLF------AMINPDHQDFLMRLQ 1063
Query: 99 ERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDLNIKDMKSIATGLQ 156
+A + VG + + +R F++ V+ +A E F+DG+LIE FL + I
Sbjct: 1064 ATIAGKVELVGNMPFNEFRGFHSMVR-EAQEPYRFVDGELIERFLACEPSVQEEIV---- 1118
Query: 157 ITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ TVD++ ++E L R+H
Sbjct: 1119 ------SIVGKMTVDEVKSMIEALRRLH 1140
>gi|239613967|gb|EEQ90954.1| UV-damaged DNA binding protein [Ajellomyces dermatitidis ER-3]
gi|327353314|gb|EGE82171.1| UV-damaged DNA binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 1199
Score = 41.2 bits (95), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 28 TIDEIQKLHIRT-VPLGEAPRRI---AYQESSQTFGVITTRIDIQEADASLNSFVSTGLV 83
T D+ ++L + + V LGE RI Q S T I+ R + + S+ F G+
Sbjct: 1049 TEDDRRRLEVTSEVLLGEMVNRIRPVNIQASLGTEAAISPRAFLGTVEGSIYLF---GI- 1104
Query: 84 TQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLD 142
I+P L LQ +A + + G + + +R+F NT +++ F+DG+LIE FL
Sbjct: 1105 --INPTYQDLLMRLQSAMAGMVVTPGGMPFNKFRAFRNTVRQAEEPYRFVDGELIERFLG 1162
Query: 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ + I ++ G TV+ + IVE+L R+H
Sbjct: 1163 CGAELQEEIVG--KVIADGVA---GVTVERVKAIVEELKRMH 1199
Score = 35.8 bits (81), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
+ALAT S +D + I+T+ +GE RR+AY + FG+ T + +++
Sbjct: 776 IALATPSELKIALVDAERTTQIQTLEVGETVRRVAYSAPERAFGIGTIKRTLEDG 830
>gi|219109892|ref|XP_002176699.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411234|gb|EEC51162.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1678
Score = 41.2 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 69 EADASLNSFVST-----GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDV 123
E D L ++ T G V +S +Y L LQ +A + S + WR +
Sbjct: 1560 EEDQRLGAYFGTADGGMGAVVPLSEPVYWRLTALQSIVANALESDCALAPRAWRLYRRST 1619
Query: 124 KSDAC------EGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKI 176
+ C +G IDGDL+ + DL+I + IA+ + GST D +D+++++
Sbjct: 1620 RRGGCRSNDRKKGVIDGDLVLQYADLSISKQEDIASAI-----GSTV--DLILDNLLEL 1671
>gi|115397303|ref|XP_001214243.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192434|gb|EAU34134.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1140
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDL 143
I+PE FL LQ +A I S+G + + +R F + V+ +A E F+DG+LIE FL
Sbjct: 1051 INPEHQDFLMRLQATMAGKIESLGDMPFNEFRGFRSMVR-EAKEPYRFVDGELIERFLTC 1109
Query: 144 NIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ I + + V D+ ++E L R+H
Sbjct: 1110 EPSVQEDIVNSVGMM----------NVHDVKVMIEALRRLH 1140
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
+A+AT +D+ + I+T+P+G RR+AY S + FG+ T ++E
Sbjct: 723 IAVATSHELKIALVDKERTTQIQTLPMGATVRRVAYSPSEKAFGIGTIERKLEEG 777
>gi|261193401|ref|XP_002623106.1| UV-damaged DNA binding protein [Ajellomyces dermatitidis SLH14081]
gi|239588711|gb|EEQ71354.1| UV-damaged DNA binding protein [Ajellomyces dermatitidis SLH14081]
Length = 1168
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 28 TIDEIQKLHIRT-VPLGEAPRRI---AYQESSQTFGVITTRIDIQEADASLNSFVSTGLV 83
T D+ ++L + + V LGE RI Q S T I+ R + + S+ F G+
Sbjct: 1018 TEDDRRRLEVTSEVLLGEMVNRIRPVNIQASLGTEAAISPRAFLGTVEGSIYLF---GI- 1073
Query: 84 TQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLD 142
I+P L LQ +A + + G + + +R+F NT +++ F+DG+LIE FL
Sbjct: 1074 --INPTYQDLLMRLQSAMAGMVVTPGGMPFNKFRAFRNTVRQAEEPYRFVDGELIERFLG 1131
Query: 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ + I ++ G TV+ + IVE+L R+H
Sbjct: 1132 CGAELQEEIVG--KVIADGVA---GVTVERVKAIVEELKRMH 1168
Score = 35.8 bits (81), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
+ALAT S +D + I+T+ +GE RR+AY + FG+ T + +++
Sbjct: 776 IALATPSELKIALVDAERTTQIQTLEVGETVRRVAYSAPERAFGIGTIKRTLEDG 830
>gi|226291941|gb|EEH47369.1| DNA damage-binding protein 1a [Paracoccidioides brasiliensis Pb18]
Length = 1209
Score = 41.2 bits (95), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFLDLN 144
I+P L LQ +A + + G + + +R+F V+ ++ F+DG+LIE F
Sbjct: 1115 INPAYQDLLMRLQSAMAGLVVTPGAMPFNKFRAFKNAVRQAEEPYRFVDGELIERFWACE 1174
Query: 145 IKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ I GL + G D TV+ + +IVE+L R+H
Sbjct: 1175 TALQEEI-VGLVVA--GGVA--DVTVEKVKRIVEELRRMH 1209
>gi|325094412|gb|EGC47722.1| DNA damage-binding protein 1a [Ajellomyces capsulatus H88]
Length = 1201
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 28 TIDEIQKLHIRT-VPLGEAPRRI---AYQESSQTFGVITTRIDIQEADASLNSFVSTGLV 83
T D+ ++L + + + LGE RI Q S I+ R + + S+ F G+
Sbjct: 1051 TDDDRRRLEVTSEILLGEMVNRIRPVNIQGSQGAEAAISPRAFLGTVEGSIYLF---GI- 1106
Query: 84 TQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLD 142
I+P L LQ +A + + G + + +R+F NT +++ F+DG+LIE FL+
Sbjct: 1107 --INPTYQDLLMRLQSAMAGMVVTPGGMPFNKFRAFRNTIRQTEEPYRFVDGELIERFLN 1164
Query: 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
++ + I ++ G TV+ + +VE+L R+H
Sbjct: 1165 CGVELQEEIVG--KVIADGVA---GVTVESVKGLVEELRRMH 1201
>gi|402223178|gb|EJU03243.1| hypothetical protein DACRYDRAFT_115454 [Dacryopinax sp. DJM-731 SS1]
Length = 1175
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 14/113 (12%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTD-------VKSDACEGFID 133
G+V + +L L +LQ + I+ G++EHS R+ + ++ GFID
Sbjct: 1068 GIVASLDEDLSMQLSNLQRNIGSVIQGPGKVEHSRRRAPQSTPGLPTILTQNTHAVGFID 1127
Query: 134 GDLIESF--LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
GD +E F LD + ++ I G + DI++++E+L R+H
Sbjct: 1128 GDFVEKFLYLDPSSDEVMRILEGKN-----KYEQLGNRYHDIVQMLEELQRLH 1175
Score = 39.3 bits (90), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTRIDIQEAD 71
A+ ST G I E QK+ +RT+ LG + P R+ Y + +GV+ R ++ D
Sbjct: 762 FASASTLLIGQIRESQKIDVRTISLGLDTPIRLTYHRGLRAYGVVCQRKELNRED 816
>gi|240275059|gb|EER38574.1| DNA damage-binding protein 1a [Ajellomyces capsulatus H143]
Length = 1134
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 28 TIDEIQKLHIRT-VPLGEAPRRI---AYQESSQTFGVITTRIDIQEADASLNSFVSTGLV 83
T D+ ++L + + + LGE RI Q S I+ R + + S+ F G+
Sbjct: 984 TDDDRRRLEVTSEILLGEMVNRIRPVNIQGSQGAEAAISPRAFLGTVEGSIYLF---GI- 1039
Query: 84 TQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLD 142
I+P L LQ +A + + G + + +R+F NT +++ F+DG+LIE FL+
Sbjct: 1040 --INPTYQDLLMRLQSAMAGMVVTPGGMPFNKFRAFRNTIRQTEEPYRFVDGELIERFLN 1097
Query: 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
++ + I ++ G TV+ + +VE+L R+H
Sbjct: 1098 CGVELQEEIVG--KVIADGVA---GVTVESVKGLVEELRRMH 1134
>gi|134077422|emb|CAK45676.1| unnamed protein product [Aspergillus niger]
Length = 1133
Score = 40.8 bits (94), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 57 TFGVITTRI---DIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEH 113
+ G + RI +IQ+ AS+ S L I+PE FL LQ +A + S+G I
Sbjct: 995 SLGEMVNRIRPVNIQQL-ASVTVEGSIYLFAIINPEHQDFLMRLQATMAGKVESLGNIPF 1053
Query: 114 SFWRSFNTDVKSDACEG--FIDGDLIESFL 141
+ +R F + V+ +A E F+DG+LIE FL
Sbjct: 1054 NEFRGFRSMVR-EAKEPYRFVDGELIERFL 1082
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT +D+ + I+T+P+GE RR+AY S + FG+ T
Sbjct: 708 IAVATRHDLKIALVDKERTTQIQTLPMGETARRVAYSPSEKAFGIGT 754
>gi|225680146|gb|EEH18430.1| DNA damage-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 1138
Score = 40.8 bits (94), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFLDLN 144
I+P L LQ +A + + G + + +R+F V+ ++ F+DG+LIE F
Sbjct: 1044 INPAYQDLLMRLQSAMAGLVVTPGAMPFNKFRAFKNAVRQAEEPYRFVDGELIERFWTCE 1103
Query: 145 IKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ I GL + G D TV+ + +IVE+L R+H
Sbjct: 1104 TALQEEI-VGLVVA--GGVA--DVTVEKVKRIVEELRRMH 1138
>gi|449540702|gb|EMD31691.1| hypothetical protein CERSUDRAFT_109269 [Ceriporiopsis subvermispora
B]
Length = 1265
Score = 40.4 bits (93), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRS-FNTDVKSDA---CEGFIDGDL 136
G++ + EL L LQ +A+ I+ G H+ WR+ N ++DA GF+DGD
Sbjct: 1165 GVIIDVDDELSLPLTSLQMNMAKRIKGPGDTNHTEWRAPTNARGRTDAEASAFGFLDGDF 1224
Query: 137 IESFL 141
IE FL
Sbjct: 1225 IEQFL 1229
>gi|409049568|gb|EKM59045.1| hypothetical protein PHACADRAFT_181065 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1268
Score = 40.0 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGV 60
LAT S+ G I + K+ IR+ LG E+PRRIAY FGV
Sbjct: 850 LATPSSLVVGQIRGVDKMQIRSFGLGHESPRRIAYHSDLNLFGV 893
>gi|156049323|ref|XP_001590628.1| hypothetical protein SS1G_08368 [Sclerotinia sclerotiorum 1980]
gi|154692767|gb|EDN92505.1| hypothetical protein SS1G_08368 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1153
Score = 40.0 bits (92), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
+ +AT + ID ++ H+RT+P+GE RRIAY + F +
Sbjct: 726 VVVATTNELKLSAIDNERRTHVRTLPIGETVRRIAYSAKERAFAI 770
>gi|212539802|ref|XP_002150056.1| UV-damaged DNA binding protein, putative [Talaromyces marneffei ATCC
18224]
gi|210067355|gb|EEA21447.1| UV-damaged DNA binding protein, putative [Talaromyces marneffei ATCC
18224]
Length = 1139
Score = 40.0 bits (92), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESF 140
L I+PE FL LQ ++ + S G + + +R+F + V+ ++ F+DG+LIE F
Sbjct: 1046 LFALINPEHQDFLMRLQTAISAYVDSPGLMPFNKFRAFRSTVREAEEPFRFVDGELIERF 1105
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD + + I L + G ++ + K++E L R+H
Sbjct: 1106 LDCDRAVQEEI---LGVVGSGD-------LESVQKMIEALRRLH 1139
Score = 35.8 bits (81), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
+A+AT +D+ + I+T+P+G RR+AY + + FG+ T + +++
Sbjct: 723 IAVATSRDLKIALVDKERTTQIQTLPIGATVRRVAYSPTEKAFGIGTIKRRLEDG 777
>gi|345482082|ref|XP_001607052.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
1-like [Nasonia vitripennis]
Length = 1415
Score = 40.0 bits (92), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK--SDACEGFIDGDL 136
S G + + + Y L LQ L I + + +R++ + V+ + G IDGDL
Sbjct: 1316 SLGYILPVPEKTYRRLLMLQNVLVSHIYHIAGLNPKAFRTYKSCVRMQGNPARGIIDGDL 1375
Query: 137 IESFLDLNIKD----MKSIATGLQ 156
+ +LDL + + K I TG Q
Sbjct: 1376 VRKYLDLPVNEKIEIAKKIGTGAQ 1399
>gi|118346970|ref|XP_001006962.1| CPSF A subunit region family protein [Tetrahymena thermophila]
gi|89288729|gb|EAR86717.1| CPSF A subunit region family protein [Tetrahymena thermophila SB210]
Length = 1112
Score = 40.0 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNT--DVKSDACEGFIDGDLIE 138
G++ ++ + Y+ L DLQE + Q + + +++ W+S KSD FIDG++I
Sbjct: 1014 GVIMSLNEQAYTVLQDLQESILQKFKCPLKFDYNKWKSIRNIPQSKSDK-SNFIDGEIIF 1072
Query: 139 SFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDI 173
L ++ ++ + G+ P S + + ++++
Sbjct: 1073 KVLKMSQSELVQVLDGMSAMPKPSIAEMEQLIENL 1107
>gi|389744702|gb|EIM85884.1| hypothetical protein STEHIDRAFT_121882 [Stereum hirsutum FP-91666
SS1]
Length = 1255
Score = 39.7 bits (91), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRS-FNTDVKSDA---CEGFIDGDL 136
GLV + EL + LQ L ++ V H WR+ + SDA GF+DGD
Sbjct: 1151 GLVLDMGKELSLHMTALQRNLNGVVKDVSGTTHKRWRAPVSGRGPSDADAEAYGFLDGDF 1210
Query: 137 IESFLDLN--IKDMKSIATG 154
IE FL+ + +MK I G
Sbjct: 1211 IEQFLNYDELSPEMKRIMEG 1230
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTV---PLG-EAPRRIAYQESSQTFGVITTRID 66
+ LAT S G++ + K+HI V P G + PRRI Y + F V TRI+
Sbjct: 817 VVLATGSKLIIGSVHGLDKMHIVPVTATPFGLDNPRRIVYDSHASVFAVACTRIE 871
>gi|189205943|ref|XP_001939306.1| DNA damage-binding protein 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975399|gb|EDU42025.1| DNA damage-binding protein 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1115
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 28/134 (20%)
Query: 64 RIDIQEADASL---NSFVST-----GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
RID+ A ++ +FV T L ISP + L LQ L I + G ++ +
Sbjct: 997 RIDVLTASDAVVIPRAFVGTVEGSIYLFGLISPAHQNLLMTLQSNLGALIPAPGDMDFAK 1056
Query: 116 WRSFNTDVK-SDACEGFIDGDLIESFLD----LNIKDMKSIATGLQITPPGSTTKRDATV 170
+R+F V+ + F+DG+ +E FLD + +K ++ + GL+
Sbjct: 1057 FRAFKNGVRQEEEPMRFVDGEFVERFLDQGEEVQVKAIEGLGVGLE-------------- 1102
Query: 171 DDIIKIVEDLTRIH 184
++ ++E L R+H
Sbjct: 1103 -EVRGLIEGLRRLH 1115
>gi|119471789|ref|XP_001258220.1| UV-damaged DNA binding protein, putative [Neosartorya fischeri NRRL
181]
gi|119406372|gb|EAW16323.1| UV-damaged DNA binding protein, putative [Neosartorya fischeri NRRL
181]
Length = 1140
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDL 143
I+P+ FL LQ +A + VG + + +R F + V+ +A E F+DG+LIE FL
Sbjct: 1051 INPDHQDFLMRLQATIAGKVELVGNMPLNEFRGFRSMVR-EAKEPYRFVDGELIERFLTC 1109
Query: 144 NIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ I +T +VD++ ++E L R+H
Sbjct: 1110 EPSLQEEIV----------STVGKMSVDEVKGMIEALRRLH 1140
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
+A+AT +D+ + I+T+P+G RR+AY S + FG+ T
Sbjct: 724 IAVATSHDLKIALVDKERTTQIQTLPIGATVRRVAYSPSEKAFGIGT 770
>gi|343429611|emb|CBQ73184.1| related to UV-damaged DNA-binding protein [Sporisorium reilianum
SRZ2]
Length = 1505
Score = 39.7 bits (91), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 108 VGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLD 142
VG I HS WR+ TD + A GF+D ++++ F+D
Sbjct: 1431 VGNIAHSDWRTLRTDHRVQAPAGFLDANVLQMFVD 1465
>gi|237837399|ref|XP_002367997.1| splicing factor 3B subunit 3, putative [Toxoplasma gondii ME49]
gi|211965661|gb|EEB00857.1| splicing factor 3B subunit 3, putative [Toxoplasma gondii ME49]
gi|221488748|gb|EEE26962.1| splicing factor 3B subunit, putative [Toxoplasma gondii GT1]
gi|221509241|gb|EEE34810.1| splicing factor 3B subunit, putative [Toxoplasma gondii VEG]
Length = 1233
Score = 39.3 bits (90), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRS-----VGRIEHSFWRSFNTDVKSDACEGFIDGD 135
G + SP L DL L +RS GR EH +RS+ K+ +DGD
Sbjct: 1141 GSIGSFSPFLTKHELDLFTHLEMVMRSEKPPLAGR-EHIMFRSYYHPAKNT-----VDGD 1194
Query: 136 LIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L ES+ L +D K IA + TP DI+K +ED+
Sbjct: 1195 LCESYALLPYEDQKRIAQDFEKTPA-----------DILKHLEDI 1228
>gi|225558618|gb|EEH06902.1| DNA damage-binding protein 1a [Ajellomyces capsulatus G186AR]
Length = 1201
Score = 39.3 bits (90), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 16/162 (9%)
Query: 28 TIDEIQKLHIRT-VPLGEAPRRI---AYQESSQTFGVITTRIDIQEADASLNSFVSTGLV 83
T D+ ++L + + + LGE RI Q S I+ R + + S+ F G+
Sbjct: 1051 TDDDRRRLEVTSEISLGEMVNRIRPVNIQGSQGAEAAISPRAFLGTVEGSIYLF---GI- 1106
Query: 84 TQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLD 142
I+P L LQ +A + + G + + +R+F NT +++ F+DG+LIE FL
Sbjct: 1107 --INPTYQDLLMRLQSAMAGMVVTPGGMPFNKFRAFRNTIRQAEEPYRFVDGELIERFLG 1164
Query: 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+++ + I ++ G TV+ +VE+L R+H
Sbjct: 1165 CSVELQEEIVG--KVIADGVA---GVTVESAKGLVEELRRMH 1201
>gi|67516629|ref|XP_658200.1| hypothetical protein AN0596.2 [Aspergillus nidulans FGSC A4]
gi|40747539|gb|EAA66695.1| hypothetical protein AN0596.2 [Aspergillus nidulans FGSC A4]
gi|259489136|tpe|CBF89158.1| TPA: damaged DNA binding protein (Eurofung) [Aspergillus nidulans
FGSC A4]
Length = 1132
Score = 39.3 bits (90), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 14/101 (13%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEG--FIDGDLIESFLDL 143
I+P+ FL LQ +A S+G I + +R+F T + A E F+DG+LIE FL
Sbjct: 1044 INPDYQDFLMRLQATMASRADSLGGIPFTDYRAFRT-MTRQATEPYRFVDGELIERFLTC 1102
Query: 144 NIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
K I + ++++++ IVE L R+H
Sbjct: 1103 EPAVQKEIVDIV-----------GSSLEEVRAIVEALRRLH 1132
>gi|213407660|ref|XP_002174601.1| damaged DNA binding protein Ddb1 [Schizosaccharomyces japonicus
yFS275]
gi|212002648|gb|EEB08308.1| damaged DNA binding protein Ddb1 [Schizosaccharomyces japonicus
yFS275]
Length = 1078
Score = 39.3 bits (90), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 93 FLFDLQERLAQTIRSVGRIEHSFW--RSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKS 150
L +Q + + +G ++ W R F S A + FIDGDL+ES DL ++
Sbjct: 991 LLLQIQHNFLEAVPPLGGLDFYKWHERLFPARA-SAANKDFIDGDLLESIEDLPESTLQK 1049
Query: 151 IATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
I G T G + + +V D++ I+ DL R+H
Sbjct: 1050 IVQG---TNGGQSL--NISVPDLLGIISDLKRLH 1078
Score = 38.1 bits (87), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 19 ATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNSFV 78
AT + ++ +QKLHIR +P+ PRRIA + + + V++ +D+Q+ AS S +
Sbjct: 682 ATRNALKLSNVNMLQKLHIRRIPVAGIPRRIA--ATKEHYFVLS--VDLQDKLASQGSSI 737
Query: 79 STGL 82
+ L
Sbjct: 738 MSSL 741
>gi|449019082|dbj|BAM82484.1| UV-damaged DNA binding protein [Cyanidioschyzon merolae strain 10D]
Length = 1372
Score = 39.3 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAY 51
+A+AT+ G I+ IQ+LHIR L E PRRIA+
Sbjct: 892 IAVATEQGLALGGIEHIQQLHIRRHDLREQPRRIAH 927
>gi|300176205|emb|CBK23516.2| unnamed protein product [Blastocystis hominis]
Length = 702
Score = 38.9 bits (89), Expect = 0.83, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 68 QEADASLNSFVST-----GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTD 122
+E++ + N +T G++ ++ + L ++ + I VG ++H WR NT
Sbjct: 563 EESEIAFNLAFATVSGRIGMIGALNDREFRMLRAIETAMENVITPVGGLDHKQWRCSNTP 622
Query: 123 VKSDACEGFIDGDLIESFLDLNIKDMKSIA 152
IDGDL+E FL+L+ + IA
Sbjct: 623 FGIKNLAYCIDGDLVEMFLELDDESQAKIA 652
>gi|429328598|gb|AFZ80358.1| hypothetical protein BEWA_032110 [Babesia equi]
Length = 1387
Score = 38.9 bits (89), Expect = 0.87, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 97 LQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQ 156
L+E + G I +S WR+F + GFIDGD +ESFL L + + + LQ
Sbjct: 1301 LEEAIIGIQSDAGNIPNSKWRNFQNSHTNIQTRGFIDGDTVESFLHLPMDLKRRVLEKLQ 1360
>gi|124505011|ref|XP_001351247.1| CPSF (cleavage and polyadenylation specific factor), subunit A,
putative [Plasmodium falciparum 3D7]
gi|7768292|emb|CAB11136.2| CPSF (cleavage and polyadenylation specific factor), subunit A,
putative [Plasmodium falciparum 3D7]
Length = 2870
Score = 38.5 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 101 LAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIK 146
+ I S+G + H+ +R + + +S C+G +DG+L++ F ++ +
Sbjct: 2788 ITDNISSIGNLSHNAYREYKVNFRSKHCKGIVDGELLKMFFHMSFE 2833
>gi|321249291|ref|XP_003191408.1| U2 snRNA binding protein [Cryptococcus gattii WM276]
gi|317457875|gb|ADV19621.1| U2 snRNA binding protein, putative [Cryptococcus gattii WM276]
Length = 1217
Score = 38.5 bits (88), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +SP+ F+ L+ + Q I VGR +H +R + +K G +DGDL ESF
Sbjct: 1129 LVPFVSPDDIEFMSTLEMHMRTQDISLVGR-DHIAYRGYYVPIK-----GVVDGDLCESF 1182
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L ++IA+ L D +V D++K +E +
Sbjct: 1183 SLLPYPKQQAIASDL-----------DRSVGDVLKKLEQM 1211
>gi|409045147|gb|EKM54628.1| hypothetical protein PHACADRAFT_210427 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1213
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +S E F+ L++ + + + VGR +H WR + VK+ +DGDL E F
Sbjct: 1124 LVPFVSKEDVDFISTLEQHMRTEQLSLVGR-DHLAWRGYYVPVKA-----VVDGDLCEMF 1177
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L SIAT L D TV +++K +E L
Sbjct: 1178 ARLPASKQSSIATEL-----------DRTVGEVLKKLEQL 1206
>gi|330935579|ref|XP_003305038.1| hypothetical protein PTT_17772 [Pyrenophora teres f. teres 0-1]
gi|311318228|gb|EFQ86975.1| hypothetical protein PTT_17772 [Pyrenophora teres f. teres 0-1]
Length = 1115
Score = 38.1 bits (87), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 20/104 (19%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFLD-- 142
ISP + L LQ L + + G ++ + +R+F V+ + F+DG+ +E FLD
Sbjct: 1027 ISPAHQNLLMTLQSNLGALVPAPGDMDFAKFRAFKNGVREEEEPMRFVDGEFVERFLDQS 1086
Query: 143 --LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
+ K ++ + GL+ ++ +VE L R+H
Sbjct: 1087 EEVQTKAIEGLGVGLE---------------EVRGLVEGLRRLH 1115
>gi|156086042|ref|XP_001610430.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797683|gb|EDO06862.1| conserved hypothetical protein [Babesia bovis]
Length = 1450
Score = 38.1 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 89 ELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF--LDLNIK 146
+L+ L ++E + + G I + WRSF A +GFIDGD IES+ LD ++K
Sbjct: 1357 KLFCRLAFVEEGINRIQPQAGNISNEHWRSFKNRWMMCAAKGFIDGDAIESYNRLDTSLK 1416
Query: 147 D------MKSIATGLQITP 159
K+ A GL +P
Sbjct: 1417 SEVYNMVSKTDAHGLFYSP 1435
>gi|395333071|gb|EJF65449.1| hypothetical protein DICSQDRAFT_178021 [Dichomitus squalens LYAD-421
SS1]
Length = 1213
Score = 37.7 bits (86), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +S E L L++ + + + VGR +H WR + VK+ +DGDL ESF
Sbjct: 1124 LVPFVSKEDVDLLTTLEQHMRTEQLSLVGR-DHLAWRGYYVPVKA-----VVDGDLCESF 1177
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L SIA L D TV +++K +E L
Sbjct: 1178 AKLPANKQSSIAGEL-----------DRTVGEVLKKLEQL 1206
>gi|440473208|gb|ELQ42023.1| hypothetical protein OOU_Y34scaffold00240g30 [Magnaporthe oryzae
Y34]
gi|440480251|gb|ELQ60926.1| hypothetical protein OOW_P131scaffold01214g43 [Magnaporthe oryzae
P131]
Length = 1093
Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDG 134
++ + PE Y ++F+ +++ +VG +E W SF+ VKS+ C +I G
Sbjct: 304 MIVETCPETYQWIFERDDQINAQAATVGHVESPPWPSFSDWVKSEPCFFWISG 356
>gi|389632581|ref|XP_003713943.1| hypothetical protein MGG_08914 [Magnaporthe oryzae 70-15]
gi|351646276|gb|EHA54136.1| hypothetical protein MGG_08914 [Magnaporthe oryzae 70-15]
Length = 1102
Score = 37.7 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDG 134
++ + PE Y ++F+ +++ +VG +E W SF+ VKS+ C +I G
Sbjct: 313 MIVETCPETYQWIFERDDQINAQAATVGHVESPPWPSFSDWVKSEPCFFWISG 365
>gi|392864500|gb|EAS34654.2| UV-damaged DNA binding protein [Coccidioides immitis RS]
Length = 1144
Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFL 141
ISP L LQ LA + S G I + +R+F + V+ ++ F+DG+LIE FL
Sbjct: 1052 ISPSAQDTLMRLQSALADFVASPGEIPFNKYRAFKSSVRQAEEPFRFVDGELIEQFL 1108
>gi|380481704|emb|CCF41690.1| CPSF A subunit region, partial [Colletotrichum higginsianum]
Length = 932
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 18 LATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LATD ID ++ H+ +PL E RR+AY + + FG+ T
Sbjct: 691 LATDQNIRIAHIDAERRTHVNPLPLRETVRRVAYSPALRAFGIGT 735
>gi|303313681|ref|XP_003066852.1| CPSF A subunit region family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240106514|gb|EER24707.1| CPSF A subunit region family protein [Coccidioides posadasii C735
delta SOWgp]
gi|320031496|gb|EFW13458.1| UV-damaged DNA binding protein [Coccidioides posadasii str. Silveira]
Length = 1144
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFL 141
ISP L LQ LA + S G I + +R+F + V+ ++ F+DG+LIE FL
Sbjct: 1052 ISPSAQDTLMRLQSALADFVASPGEIPFNKYRAFKSSVRQAEEPFRFVDGELIEQFL 1108
>gi|119191318|ref|XP_001246265.1| hypothetical protein CIMG_00036 [Coccidioides immitis RS]
Length = 1072
Score = 37.4 bits (85), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 86 ISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVK-SDACEGFIDGDLIESFL 141
ISP L LQ LA + S G I + +R+F + V+ ++ F+DG+LIE FL
Sbjct: 980 ISPSAQDTLMRLQSALADFVASPGEIPFNKYRAFKSSVRQAEEPFRFVDGELIEQFL 1036
>gi|392570042|gb|EIW63215.1| hypothetical protein TRAVEDRAFT_161375 [Trametes versicolor FP-101664
SS1]
Length = 1213
Score = 37.4 bits (85), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +S E L L++ + + + VGR +H WR + VKS +DGDL ESF
Sbjct: 1124 LVPFVSKEDVDLLTTLEQHMRTEQLSLVGR-DHLTWRGYYVPVKS-----VVDGDLCESF 1177
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L +IA L D TV +++K +E L
Sbjct: 1178 AKLPANKQSTIAGEL-----------DRTVGEVLKKLEQL 1206
>gi|255534076|ref|YP_003094448.1| hypothetical protein Phep_4195 [Pedobacter heparinus DSM 2366]
gi|255347060|gb|ACU06386.1| hypothetical protein Phep_4195 [Pedobacter heparinus DSM 2366]
Length = 237
Score = 37.4 bits (85), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 61 ITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFD----LQERLAQTIRSVGRIEHSFW 116
IT + QE D + G Q P SFLF + E +T ++ R F
Sbjct: 110 ITGQTKKQELDELKRDYKDKGSFYQGKPPFLSFLFKPLTAVYELFGRTPKNARR----FG 165
Query: 117 RSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKI 176
R + T+++ +GF + LI+S DL KD++ L P K A D IK
Sbjct: 166 RYYETELQQTQIDGFFNEFLIQSNTDLKGKDLEKFM--LDYRPEYEKAKNWAQY-DAIKY 222
Query: 177 VED 179
+ D
Sbjct: 223 IRD 225
>gi|440300137|gb|ELP92626.1| DNA damage-binding protein, putative [Entamoeba invadens IP1]
Length = 1086
Score = 37.4 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 84 TQISPELYSFLFDLQERLAQTIRSVGRIEHSF--WRSFNTDVKSDACEGFIDGDLIESFL 141
T+I+ E Y LF L+ + + ++ V E SF W+ D K + IDG+++E FL
Sbjct: 995 TEINLETYKKLFALESEMLREMKGVIECE-SFGQWKMVFDDWKRMEAQNVIDGNVVELFL 1053
Query: 142 DLNIKDMKSIA 152
DL + K IA
Sbjct: 1054 DLPKESQKHIA 1064
>gi|156084934|ref|XP_001609950.1| splicing factor 3b, subunit 3, 130kD [Babesia bovis T2Bo]
gi|154797202|gb|EDO06382.1| splicing factor 3b, subunit 3, 130kD, putative [Babesia bovis]
Length = 1169
Score = 37.4 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 24/159 (15%)
Query: 30 DEIQKLHIRTVPLGEAPRRIAYQESSQ-TFGVITTRIDIQEADASLNSFV------STG- 81
D+ + + VP E+ R I + Q G + T +D S + + S G
Sbjct: 1022 DKFDSIFVTRVPQEESTRHIQLENVCQFHLGDLPTAMDKAALSQSTHVVLYGTVMGSIGA 1081
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFL 141
LV S + FL L+ +A + EHSF+RS+ V+ +DGDL E F
Sbjct: 1082 LVPFQSKDELDFLQHLEMLMATEAPPLCGREHSFYRSYYVPVQQ-----VVDGDLCEQFR 1136
Query: 142 DLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L + +A L D TV+++++ ++D+
Sbjct: 1137 HLTEAQQRKVAQQL-----------DTTVNNVLRKLDDI 1164
>gi|392591958|gb|EIW81285.1| hypothetical protein CONPUDRAFT_56293 [Coniophora puteana RWD-64-598
SS2]
Length = 1245
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRS-VGRIEHSFWRS-FNTDVKSDACE---GFID 133
S G+V +S EL + LQ L+ + G H+ +R+ N +SDA GF+D
Sbjct: 1138 SIGVVIDMSDELSLHMSSLQRNLSTYFAAQPGGASHTKYRAPKNARGRSDADNSSFGFLD 1197
Query: 134 GDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATV--DDIIKIVEDLTRIH 184
GDL+E FL L D +++ L+ GST ++ + IIK++E L +H
Sbjct: 1198 GDLLERFL-LFGDDEEAVRKVLE----GSTEAEQLSIAPERIIKVLERLQSMH 1245
>gi|224000243|ref|XP_002289794.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975002|gb|EED93331.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1820
Score = 37.0 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 76 SFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDAC------E 129
SFVS + +S Y L LQ ++ + S + H WR + + C +
Sbjct: 1717 SFVS---IIPLSEPTYWRLTALQSVMSNALESNAALSHRAWRLYRRSTRRGGCRTNDRKK 1773
Query: 130 GFIDGDLIESFLDLNIKDMKSIATGLQIT 158
G ID DL+ F+DL + + + + + + T
Sbjct: 1774 GVIDADLVMKFVDLPLPEQEDLTSSIGST 1802
>gi|393217872|gb|EJD03361.1| hypothetical protein FOMMEDRAFT_108572 [Fomitiporia mediterranea
MF3/22]
Length = 1213
Score = 37.0 bits (84), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +S E F+ L++ + ++ + VGR +H WR + VK+ +DGDL E F
Sbjct: 1124 LVPFVSKEDVDFISTLEQHMRSEKLSLVGR-DHLAWRGYYVPVKA-----VVDGDLCEQF 1177
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L +IA L D TV +++K +E L
Sbjct: 1178 ARLPANKQSAIAVEL-----------DRTVGEVLKKLEQL 1206
>gi|299743623|ref|XP_001835883.2| hypothetical protein CC1G_02971 [Coprinopsis cinerea okayama7#130]
gi|298405741|gb|EAU85948.2| hypothetical protein CC1G_02971 [Coprinopsis cinerea okayama7#130]
Length = 1282
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 89 ELYSFLFDLQERLAQTIRSVGRIEHSFWRS-FNTDVKSDACE---GFIDGDLIESFLD-L 143
+L L LQ L+ ++ VG H+ +R+ N ++DA GFIDGD +E+FL L
Sbjct: 1186 QLALHLSGLQRNLSALVQGVGASTHTKFRAPRNNRGRTDAEAAGFGFIDGDFVETFLGML 1245
Query: 144 NIKDM-KSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
K M + TG Q P K + +VD+ K +E L +H
Sbjct: 1246 GDKGMVDKVMTG-QSAP----EKLEFSVDEYQKTLETLQGLH 1282
>gi|405117821|gb|AFR92596.1| pre-mRNA-splicing factor RSE1 [Cryptococcus neoformans var. grubii
H99]
Length = 1217
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +S + F+ L+ + Q I VGR +H +R + +K G +DGDL ESF
Sbjct: 1129 LVPFVSSDDIEFMSTLEMHMRTQDISPVGR-DHIAYRGYYVPIK-----GVVDGDLCESF 1182
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L ++IAT L D +V D++K +E +
Sbjct: 1183 SLLPYPKQQAIATDL-----------DRSVGDVLKKLEQM 1211
>gi|325094074|gb|EGC47384.1| cleavage factor two protein 1 [Ajellomyces capsulatus H88]
Length = 1377
Score = 36.6 bits (83), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S L+T +S Y L LQ +LA T+ + +R+ +D G +DGDL++
Sbjct: 1281 SIALITPVSETSYRRLSALQSQLANTLEHPCGLNPRAFRAVESD--GIGGRGMVDGDLVK 1338
Query: 139 SFLDLNIKDMKSIAT 153
+LDL + IA
Sbjct: 1339 RWLDLGTQRKAEIAN 1353
>gi|296411833|ref|XP_002835634.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629420|emb|CAZ79791.1| unnamed protein product [Tuber melanosporum]
Length = 1053
Score = 36.6 bits (83), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 4 VTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
VT+ + + +A++ +D ++ +H++++P+G+ RRIAY + ++T
Sbjct: 700 VTSFNSPSFPDAVVIASEDDLKLSVVDPVRTMHVQSLPVGDVVRRIAYSKEKNIIAIVT 758
>gi|240277254|gb|EER40763.1| cleavage factor two protein 1 [Ajellomyces capsulatus H143]
Length = 1408
Score = 36.6 bits (83), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S L+T +S Y L LQ +LA T+ + +R+ +D G +DGDL++
Sbjct: 1312 SIALITPVSETSYRRLSALQSQLANTLEHPCGLNPRAFRAVESD--GIGGRGMVDGDLVK 1369
Query: 139 SFLDLNIKDMKSIAT 153
+LDL + IA
Sbjct: 1370 RWLDLGTQRKAEIAN 1384
>gi|213407244|ref|XP_002174393.1| cleavage factor one Cft1 [Schizosaccharomyces japonicus yFS275]
gi|212002440|gb|EEB08100.1| cleavage factor one Cft1 [Schizosaccharomyces japonicus yFS275]
Length = 1431
Score = 36.2 bits (82), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 32 IQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNSFVSTGLVTQISPELY 91
I +H+ + P + Y E + F ITT +D SL + IS +Y
Sbjct: 1298 ITAIHLVPKMKKDRPGEVDYDEGDE-FACITTN-----SDGSLQALCP------ISERVY 1345
Query: 92 SFLFDLQERLAQTIRSVGRIEHSFWRSFNT-DVKSDACEGFIDGDLIESFLDLNIKDMKS 150
L +Q LA I +VG + +R NT ++A +DG LIE F +++ +
Sbjct: 1346 RRLNIIQNYLANRIETVGGLNPRSYRLINTVSSLNNATHRILDGGLIEHFSYMSVAHRQE 1405
Query: 151 IATGLQITPPGSTTKRD 167
+A + P ST D
Sbjct: 1406 MAYKCGV--PISTIMND 1420
>gi|156097003|ref|XP_001614535.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148803409|gb|EDL44808.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 2558
Score = 35.8 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 64 RIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLA------QTIRSVGRIEHSFWR 117
R +I + + S+ S G ++ + P +S + L I S+G + HS +R
Sbjct: 2435 RNEILQKEQSILCASSEGSISALIP--FSNFLQFKRALCIEIAINDNISSLGNLSHSSYR 2492
Query: 118 SFNTDVKSDACEGFIDGDLIESFLDL 143
+ + S C+G +DG+L + F L
Sbjct: 2493 EYKVSLASKNCKGVVDGELFKMFFYL 2518
>gi|403411971|emb|CCL98671.1| predicted protein [Fibroporia radiculosa]
Length = 1212
Score = 35.8 bits (81), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +S E F+ L++ + + + VGR +H WR + VK+ +DGDL E+F
Sbjct: 1123 LVPFVSKEDVDFISTLEQHMRTEQLSLVGR-DHLTWRGYYVPVKA-----VVDGDLCETF 1176
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L +IA L D TV +++K +E L
Sbjct: 1177 ARLPASKQSAIAGEL-----------DRTVGEVLKKLEQL 1205
>gi|196012166|ref|XP_002115946.1| hypothetical protein TRIADDRAFT_59883 [Trichoplax adhaerens]
gi|190581722|gb|EDV21798.1| hypothetical protein TRIADDRAFT_59883 [Trichoplax adhaerens]
Length = 1187
Score = 35.4 bits (80), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKS--DACEGFIDGDL 136
S GL+ + + Y LF LQ +L+ + + +R+F + K ++ +DGDL
Sbjct: 1090 SIGLLLPVDEKEYRRLFSLQAKLSIYLEQNAGLNQKAFRTFRSHQKKLQNSMRNILDGDL 1149
Query: 137 IESFLDLNIKDMKSIATGLQITP 159
++ + L + + +A + TP
Sbjct: 1150 LKRYFHLGFVERRDLAKQIMSTP 1172
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,579,211,600
Number of Sequences: 23463169
Number of extensions: 96709000
Number of successful extensions: 231118
Number of sequences better than 100.0: 357
Number of HSP's better than 100.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 230302
Number of HSP's gapped (non-prelim): 661
length of query: 184
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 51
effective length of database: 9,238,593,890
effective search space: 471168288390
effective search space used: 471168288390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)