BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7983
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 127 bits (320), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/104 (59%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ATVDD+IKIVE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQID-DGSGMKREATVDDLIKIVEELTRIH 1140
Score = 85.9 bits (211), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/55 (70%), Positives = 48/55 (87%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDA 745
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQI GS KR+ TVDD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVIANLQID-DGSGMKRETTVDDLIKVVEELTRIH 1140
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLFESPRKICYQEVSQCFGVLSSRIEVQDASGG 748
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA ST T GT++EIQKLHIRTVP+ E+PR+I YQE SQ FGV++TRI++Q+
Sbjct: 691 LALANTSTLTIGTMNEIQKLHIRTVPIYESPRKICYQEVSQCFGVLSTRIEVQDTSGG 748
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGG 748
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
GLVT +S Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ GFIDGDLIESF
Sbjct: 1038 GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ M+ + LQ GS KR+AT DD+IK+VE+LTRIH
Sbjct: 1098 LDISRPKMQEVVANLQYD-DGSGMKREATADDLIKVVEELTRIH 1140
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++
Sbjct: 691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGG 748
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
Q G TT I+ + N + G+VTQI + Y FL L+ERL + I+SVG+IEH++
Sbjct: 1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073
Query: 116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
+R+F + K + EGFIDGDLIESFLDL+ M+ GL++T G ++ A V+D+IK
Sbjct: 1074 YRNFQINSKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGE--RKSADVEDVIK 1131
Query: 176 IVEDLTRIH 184
IVEDLTR+H
Sbjct: 1132 IVEDLTRMH 1140
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 42/53 (79%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQ 68
LALA + GTIDEIQKLHIRTVPLGE PRRIAYQESSQTF V T RID+
Sbjct: 690 LALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDVH 742
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ +G++DGDLIESF
Sbjct: 996 GVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ G+ D V+++ K VE+LTR+H
Sbjct: 1056 LDLSRGKMEEISKGM-----------DVQVEELCKRVEELTRLH 1088
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTID+IQKLHIRT+P+GE RRI +QE ++TF + R + A+ S +
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLRNE-PSAEESES 743
Query: 76 SFV 78
FV
Sbjct: 744 HFV 746
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + E Y+FL LQ L + I+ VG + H WRSFN + ++ F+DGDLIESF
Sbjct: 996 GVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESF 1055
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V+++ K VE+LTR+H
Sbjct: 1056 LDLSRNKMEDISKSMNV-----------QVEELCKRVEELTRLH 1088
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 37/47 (78%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVIT 62
LA+A + T GTID+IQKLHIRT+PLGE RRI +QE ++TFG+ +
Sbjct: 685 LAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGICS 731
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF + K+ + F+DGDLIESF
Sbjct: 998 GVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESF 1057
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V++++K VE+LTR+H
Sbjct: 1058 LDLSRNRMEEISKAMSV-----------PVEELMKRVEELTRLH 1090
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTIDEIQKLHIR++PLGE RRI++QE ++TF + + + AD
Sbjct: 685 LAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPEM 744
Query: 76 SFV 78
FV
Sbjct: 745 HFV 747
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1
Length = 1095
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ + + Y FL LQ L + I+ VG + H WRSF + K+ + F+DGDLIESF
Sbjct: 1003 GVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESF 1062
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LDL+ M+ I+ + + V++++K VE+LTR+H
Sbjct: 1063 LDLSRNRMEEISKAMSV-----------PVEELMKRVEELTRLH 1095
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
LA+A + T GTIDEIQKLHIR++PLGE RRI++QE ++TF + + + AD
Sbjct: 690 LAIAKEGELTIGTIDEIQKLHIRSIPLGEHARRISHQEQTRTFALCSVKYTQSNADDPEM 749
Query: 76 SFV 78
FV
Sbjct: 750 HFV 752
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE PE=1
SV=1
Length = 1181
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 72 ASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGF 131
AS+N S G+V IS E + F LQ+ L Q +R VG H WR+F+ D + + F
Sbjct: 1081 ASVNG--SIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNF 1138
Query: 132 IDGDLIESFLDLNIKDMKSIATGLQITP 159
IDGDLIE+FLDL + L ITP
Sbjct: 1139 IDGDLIETFLDLKYESQLKAVADLGITP 1166
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLG-EAPRRIAYQESSQTFGVITTR 64
+A+AT ++ T GTIDEIQKLHI+T+PL E RRI + E + VIT +
Sbjct: 747 MAIATTNSLTIGTIDEIQKLHIKTIPLNEEMGRRIVHLEDHSCYAVITVK 796
>sp|Q21554|DDB1_CAEEL DNA damage-binding protein 1 OS=Caenorhabditis elegans GN=ddb-1
PE=1 SV=2
Length = 1134
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID--IQEADAS 73
L ++ ++ FGT+D+IQK+H+R++P+GE+ RIAYQ+S+ T+GV + R + + AS
Sbjct: 693 LVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTSTYGVCSNRTESKAERVFAS 752
Query: 74 LNSFVSTGLVTQISPELYSFLFDLQERLAQTIRS 107
N+ V+ +Q P++ S D+ E T S
Sbjct: 753 KNALVT----SQSRPKVASTRADMDESPPNTTSS 782
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
G++ QI + FL +++ +A ++++ IEHS +R+F +++ GF+DGDL+ES
Sbjct: 1033 GMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPPSGFVDGDLVESI 1092
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
LD++ I + + + RD +I+K++EDL R+H
Sbjct: 1093 LDMDRSVAMDILSKVSDKGWDPSLPRDPV--EILKVIEDLARMH 1134
>sp|O13807|DDB1_SCHPO DNA damage-binding protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ddb1 PE=1 SV=1
Length = 1072
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 93 FLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIA 152
L LQ+ + + I S G + H W+ + + ++ + IDG LIES L L + I
Sbjct: 986 LLLQLQDNIRKVIPSFGGLSHKEWKEYRGENETSPSD-LIDGSLIESILGLREPILNEIV 1044
Query: 153 TGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
G TK D +V D+ I+E+L ++H
Sbjct: 1045 NGGH-----EGTKLDISVQDLKSIIENLEKLH 1071
>sp|O27612|GLNA_METTH Glutamine synthetase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=glnA PE=3 SV=1
Length = 442
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 38 RTVPLGEAPRRIAYQESSQTFGV-------ITTRIDIQEADASLNSFVS---------TG 81
R VP EAP IAY +++ + TR++++ D S N +++ G
Sbjct: 297 RLVPGYEAPVYIAYGLKNRSTLIRIPASRGKGTRVELRMPDPSCNPYLAFAAMLEAGMNG 356
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVG--RIEHSFWRSFNTDVKSDACEGFIDGDLIES 139
+ +I P + + D+ E+ +R +G + S W +++ + D +G + G + E
Sbjct: 357 IQNKIDPGEPTEI-DVYEKSMSELREMGIETLPSSLWEAYHALEEDDVIKGALGGHVYEK 415
Query: 140 FLDLNIKD 147
F+++ ++
Sbjct: 416 FMEIKHRE 423
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +S + F+ L+ + Q I VGR +H +R + +K G +DGDL ESF
Sbjct: 1129 LVPFVSSDDIEFMSTLEMHMRTQDISLVGR-DHIAYRGYYVPIK-----GVVDGDLCESF 1182
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L ++IA L D +V D++K +E +
Sbjct: 1183 SLLPYPKQQAIALDL-----------DRSVGDVLKKLEQM 1211
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 82 LVTQISPELYSFLFDLQERL-AQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
LV +S + F+ L+ + Q I VGR +H +R + +K G +DGDL ESF
Sbjct: 1129 LVPFVSSDDIEFMSTLEMHMRTQDISLVGR-DHIAYRGYYVPIK-----GVVDGDLCESF 1182
Query: 141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDL 180
L ++IA L D +V D++K +E +
Sbjct: 1183 SLLPYPKQQAIALDL-----------DRSVGDVLKKLEQM 1211
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFL 141
L+ +S LF+LQ + Q+ ++ +H RS+ +K+ IDGDL+E FL
Sbjct: 1131 LIPLVSKSEVELLFNLQLYMQQSQNNLVGKDHLKLRSYYNPIKN-----VIDGDLLERFL 1185
Query: 142 DLNI 145
+ +I
Sbjct: 1186 EFDI 1189
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFL 141
LV S E + F L+ + + +H +RS+ VK+ IDGDL E F
Sbjct: 1129 LVPFTSHEDHDFFQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKN-----VIDGDLCEQFN 1183
Query: 142 DLNIKDMKSIATGLQITPPGSTTK 165
++ KS++ L TPP + K
Sbjct: 1184 SMDPHKQKSVSEELDRTPPEVSKK 1207
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 108 VGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTK 165
GR +H +RS+ VK+ IDGDL E F + K+++ L TPP T K
Sbjct: 1156 CGR-DHLSFRSYYFPVKN-----VIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVTKK 1207
>sp|Q74X11|CLPB_YERPE Chaperone protein ClpB OS=Yersinia pestis GN=clpB PE=3 SV=2
Length = 857
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 9 KVTLAFHLALATDSTFTFGTIDE-IQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
++T F LALA + G ++ I+ LH+ + L + + +S V R DI
Sbjct: 5 RLTSKFQLALADAQSLALGRDNQFIEPLHLMSALLNQDGGTVRPLLTSAGINVARLRSDI 64
Query: 68 QEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQ 103
++A L TG Q S EL L +L ++LAQ
Sbjct: 65 EQALGRLPQVEGTGGDVQPSNELVRVL-NLCDKLAQ 99
>sp|Q1E5B0|CFT1_COCIM Protein CFT1 OS=Coccidioides immitis (strain RS) GN=CFT1 PE=3 SV=1
Length = 1387
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 79 STGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIE 138
S G+VT ++ + Y L LQ +L ++ + +R+ +D G +DG+L+
Sbjct: 1292 SIGVVTPLTEDSYRRLSALQSQLVTSMEHPCGLNPKAYRAVESD--GFGGRGIVDGNLLL 1349
Query: 139 SFLDLNIKDMKSIA 152
+LD+ ++ IA
Sbjct: 1350 RWLDMGVQRKAEIA 1363
>sp|Q04693|RSE1_YEAST Pre-mRNA-splicing factor RSE1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSE1 PE=1 SV=1
Length = 1361
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 16/73 (21%)
Query: 108 VGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRD 167
+GR +H +RS+ V+ IDGDL E+FL L++ + + +A L +
Sbjct: 1300 LGR-DHQEYRSYYAPVRK-----VIDGDLCENFLRLSLNEQEFLAKNL----------KS 1343
Query: 168 ATVDDIIKIVEDL 180
V+DII+ + ++
Sbjct: 1344 VQVEDIIQTINEV 1356
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 108 VGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTK 165
GR +H +RS+ VK+ IDGDL E F + K+++ L TPP + K
Sbjct: 1156 CGR-DHLSFRSYYFPVKN-----VIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKK 1207
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 108 VGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTK 165
GR +H +RS+ VK+ IDGDL E F + K+++ L TPP + K
Sbjct: 1156 CGR-DHLSFRSYYFPVKN-----VIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKK 1207
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 108 VGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTK 165
GR +H +RS+ VK+ IDGDL E F + K+++ L TPP + K
Sbjct: 1156 CGR-DHLSFRSYYFPVKN-----VIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKK 1207
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 82 LVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFL 141
LV +S E L L+ L Q S+ +H +RS VKS IDGDL E+F
Sbjct: 1132 LVPFVSKEDVDTLSTLESHLRQENNSIVGRDHLAYRSSYAPVKS-----VIDGDLCETFG 1186
Query: 142 DLNIKDMKSIATGLQITPPGSTTKRDA 168
L+ +IA L PG K+ A
Sbjct: 1187 LLSPAKQNAIAGELD-RKPGEINKKLA 1212
>sp|A4FDS0|ASSY_SACEN Argininosuccinate synthase OS=Saccharopolyspora erythraea (strain
NRRL 23338) GN=argG PE=3 SV=1
Length = 472
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 59 GVITTR-IDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHS 114
G +T R +DI ++ A L ++ GLV Q EL + LQ A+ I SVG E S
Sbjct: 404 GQLTMRNLDIADSRAKLENYAQLGLVGQAQAEL---VGSLQSGGAEAIASVGTHEES 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,497,794
Number of Sequences: 539616
Number of extensions: 2310932
Number of successful extensions: 6072
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6022
Number of HSP's gapped (non-prelim): 52
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)