Query psy7983
Match_columns 184
No_of_seqs 119 out of 335
Neff 5.4
Searched_HMMs 13730
Date Fri Aug 16 23:50:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7983.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7983hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ttea1 a.5.2.1 (A:161-215) Ub 76.9 1.9 0.00014 26.9 4.4 45 132-181 8-54 (55)
2 d2fi2a1 a.28.3.2 (A:37-128) Zi 72.2 2.9 0.00021 28.3 4.9 43 129-182 45-88 (92)
3 d1dula_ a.36.1.1 (A:) Signal s 67.2 3.5 0.00025 26.6 4.2 28 144-182 34-61 (69)
4 d1y7qa1 a.28.3.2 (A:37-132) Zi 64.3 4.3 0.00031 27.7 4.4 44 129-183 47-91 (96)
5 d2ffha2 a.36.1.1 (A:319-418) S 61.0 4.3 0.00031 27.8 3.9 28 144-182 63-90 (100)
6 d1qb2a_ a.36.1.1 (A:) SRP54M { 61.0 2.7 0.0002 29.1 2.8 30 143-183 73-102 (107)
7 d1hq1a_ a.36.1.1 (A:) Signal s 60.5 4.5 0.00033 27.8 4.0 29 143-182 67-95 (104)
8 d1qzxa2 a.36.1.1 (A:295-432) S 51.2 7.4 0.00054 27.9 4.0 30 143-183 101-130 (138)
9 d1nlqa_ b.121.3.1 (A:) Chromat 42.2 9.4 0.00069 25.6 3.1 34 33-66 28-68 (105)
10 d2hkja1 a.156.1.3 (A:229-306) 30.1 44 0.0032 20.6 4.9 45 137-183 31-75 (78)
11 d1zara1 a.4.5.56 (A:2-90) Rio2 23.3 44 0.0032 22.0 3.9 46 85-155 8-53 (89)
12 d1jjcb2 a.6.1.1 (B:400-474) Do 22.9 20 0.0015 22.5 2.0 53 132-184 7-68 (75)
No 1
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=76.94 E-value=1.9 Score=26.89 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=33.5
Q ss_pred eehhHHHHHhc--CCHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHh
Q psy7983 132 IDGDLIESFLD--LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLT 181 (184)
Q Consensus 132 IDGDLIE~FL~--L~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~ 181 (184)
||=++|++|.. +++++-.+|+++||+... . +..-+..-+.||+|-
T Consensus 8 id~~~V~~f~~mGF~rdKvI~VLrrlgik~~----~-~~~~~~~n~ilEELL 54 (55)
T d1ttea1 8 IDHDLIDEFESQGFEKDKIVEVLRRLGVKSL----D-PNDNNTANRIIEELL 54 (55)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCSSC----C-SSCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCchhHHHHHHHhCcCCC----C-cccchHHHHHHHHHh
Confidence 78899999987 599999999999996211 1 123355678888873
No 2
>d2fi2a1 a.28.3.2 (A:37-128) Zinc finger protein 42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.17 E-value=2.9 Score=28.31 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=35.8
Q ss_pred cceeehhHHHHHhc-CCHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHhc
Q psy7983 129 EGFIDGDLIESFLD-LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTR 182 (184)
Q Consensus 129 kgfIDGDLIE~FL~-L~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~r 182 (184)
..+++==++|+||. ||.+.|..|-..-- .|.++....+|+|.+
T Consensus 45 eqilelLVLEQFl~~lP~e~~~~V~e~~p-----------~s~~eav~L~Edl~~ 88 (92)
T d2fi2a1 45 EQMLELLVLEQFLGALPPEIQARVQGQRP-----------GSPEEAAALVDGLRR 88 (92)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHCC-----------CSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHhCC-----------CCHHHHHHHHHHHhh
Confidence 56888889999998 79998888865442 589999999999875
No 3
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=67.17 E-value=3.5 Score=26.63 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=23.6
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHhc
Q psy7983 144 NIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTR 182 (184)
Q Consensus 144 ~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~r 182 (184)
..+++..||.|.| ++++||.+.|.....
T Consensus 34 ~~SR~~RIA~GSG-----------~~~~eVn~Llkqf~~ 61 (69)
T d1dula_ 34 KGSRKRRIAAGSG-----------MQVQDVNRLLKQFDD 61 (69)
T ss_dssp CHHHHHHHHHHTT-----------CCHHHHHHHHHHHHH
T ss_pred chhHHHHHHccCC-----------CCHHHHHHHHHHHHH
Confidence 6789999999999 799999888876654
No 4
>d1y7qa1 a.28.3.2 (A:37-132) Zinc finger protein 174 {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.32 E-value=4.3 Score=27.74 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=35.8
Q ss_pred cceeehhHHHHHhc-CCHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHhcc
Q psy7983 129 EGFIDGDLIESFLD-LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183 (184)
Q Consensus 129 kgfIDGDLIE~FL~-L~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~rl 183 (184)
..++|==++|+||. ||.+.|..|-..- .-|.++....+|++.+.
T Consensus 47 EqilelLVLEQFl~~lP~e~q~wV~e~~-----------p~s~eeav~L~Edl~~~ 91 (96)
T d1y7qa1 47 EQILELLVMEQFLTILPEEIQARVRHRC-----------LMSSKEIVTLVEDFHRA 91 (96)
T ss_dssp HHHHHHHHHHHHHHHSCTHHHHHHHTSC-----------CCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHhC-----------CCCHHHHHHHHHHHHHh
Confidence 46888889999998 7888888876643 25999999999999874
No 5
>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=61.05 E-value=4.3 Score=27.80 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.1
Q ss_pred CHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHhc
Q psy7983 144 NIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTR 182 (184)
Q Consensus 144 ~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~r 182 (184)
+.+++.+||.|.| ++++||.+.|.....
T Consensus 63 ~~sR~~RIA~GSG-----------~~~~eV~~Llkqf~~ 90 (100)
T d2ffha2 63 NGSRRKRIAKGSG-----------TSVQEVNRFIKAFEE 90 (100)
T ss_dssp CHHHHHHHHHHHT-----------SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHccCC-----------CCHHHHHHHHHHHHH
Confidence 6789999999999 799999988877654
No 6
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.96 E-value=2.7 Score=29.09 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=24.9
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHhcc
Q psy7983 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183 (184)
Q Consensus 143 L~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~rl 183 (184)
++++++.+||.|.| ++++||.+.|.....+
T Consensus 73 ~~~sR~~RIA~GSG-----------~~~~eVn~Llkqf~~m 102 (107)
T d1qb2a_ 73 KQPGRIQRVARGSG-----------VSTRDVQELLTQYTKF 102 (107)
T ss_dssp HSTHHHHHHHHHTT-----------CCHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhccC-----------CCHHHHHHHHHHHHHH
Confidence 36789999999998 7999999888876543
No 7
>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=60.45 E-value=4.5 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=24.7
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHhc
Q psy7983 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTR 182 (184)
Q Consensus 143 L~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~r 182 (184)
++.+++.+||.|.| ++++||.+.|+....
T Consensus 67 l~~SR~~RIA~GSG-----------~~~~eV~~Llkqf~~ 95 (104)
T d1hq1a_ 67 IKGSRKRRIAAGSG-----------MQVQDVNRLLKQFDD 95 (104)
T ss_dssp CCHHHHHHHHHHHT-----------CCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHccCC-----------CCHHHHHHHHHHHHH
Confidence 47899999999999 799999988887654
No 8
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=51.21 E-value=7.4 Score=27.91 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=25.3
Q ss_pred CCHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHhcc
Q psy7983 143 LNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183 (184)
Q Consensus 143 L~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~rl 183 (184)
|+.+++.+||.|.| ++++||.+.|.....+
T Consensus 101 l~~SR~~RIA~GSG-----------~~~~eV~~Llkqf~~m 130 (138)
T d1qzxa2 101 IDKSRMRRIAEGSG-----------LEVEEVRELLEWYNNM 130 (138)
T ss_dssp CCHHHHHHHHHHHT-----------CCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhccCC-----------CCHHHHHHHHHHHHHH
Confidence 46799999999999 7999999888876543
No 9
>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1, Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=42.15 E-value=9.4 Score=25.62 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=26.6
Q ss_pred hcccceeecCCCCccc-------cccccccceeEEEeeeec
Q psy7983 33 QKLHIRTVPLGEAPRR-------IAYQESSQTFGVITTRID 66 (184)
Q Consensus 33 ~~~~~~~~~~~~~~~~-------~~~~~qs~tfa~~s~~~~ 66 (184)
++|||+++-||+.+.- +++......+-+||++..
T Consensus 28 ~~L~lsqa~Lg~~ak~~e~~~V~v~~~~~~~~~~IatL~~~ 68 (105)
T d1nlqa_ 28 QKLVIKQILLGAEAKENEFNVVEVNTPKDSVQIPIAVLKAG 68 (105)
T ss_dssp CEEEEEEEEECTTSCBTCEEEEEEEEGGGTEEEEEEEEEBT
T ss_pred cEEEEEEEEeCCCCccCccEEEEEEEcCCCeEEEEEEecCC
Confidence 6899999999987752 455556677899999855
No 10
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=30.06 E-value=44 Score=20.63 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=35.0
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCCCCCCCCCCCHHHHHHHHHHHhcc
Q psy7983 137 IESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRI 183 (184)
Q Consensus 137 IE~FL~L~~~~q~eV~~~l~~~~~~~~~~~~~svedI~k~IEeL~rl 183 (184)
-..|-.+...-..||+...+++|.... ...+.+|+.++++.++++
T Consensus 31 q~~f~GvGn~~a~Eil~~agi~P~~~~--~~L~~~e~~~L~~air~~ 75 (78)
T d2hkja1 31 VNEFQSIGDTTADKILELAGLKPNKKV--KNLTEEEITRLVETFKKY 75 (78)
T ss_dssp HHHSSSCCHHHHHHHHHHHTCCTTSBG--GGCCHHHHHHHHHHHHHC
T ss_pred HHHhcccCHHHHHHHHHHhCCCccccc--ccCCHHHHHHHHHHHhhh
Confidence 344667899999999999998655433 247889999999999875
No 11
>d1zara1 a.4.5.56 (A:2-90) Rio2 serine protein kinase N-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.26 E-value=44 Score=21.99 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=34.3
Q ss_pred ecChHHHHHHHHHHHHHHhhcCCCcCCCCcccceeecCCCCCCCcceeehhHHHHHhcCCHHHHHHHHhhc
Q psy7983 85 QISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGL 155 (184)
Q Consensus 85 pIs~~~y~~L~~LQ~~L~~~v~~vGGl~h~~yRs~~~~~r~~p~kgfIDGDLIE~FL~L~~~~q~eV~~~l 155 (184)
.++++.|+.|.++|..|.+ .-+|--++|+++..|+.+.-..++..+
T Consensus 8 ~L~~~dfRvL~aiE~gmrn-------------------------hE~VP~~lI~~~a~l~~~~~~~~L~~L 53 (89)
T d1zara1 8 KMGKHSWRIMDAIFKNLWD-------------------------YEYVPLQLISSHARIGEEKARNILKYL 53 (89)
T ss_dssp TCCHHHHHHHHHHHTTTTT-------------------------CSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhcccc-------------------------CccccHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567788888888764432 235667899999999998888877766
No 12
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=22.94 E-value=20 Score=22.48 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=34.0
Q ss_pred eehhHHHHHhc--CCHHHHHHHHhhcCCCCCCCCCC----CC---CCHHHHHHHHHHHhccC
Q psy7983 132 IDGDLIESFLD--LNIKDMKSIATGLQITPPGSTTK----RD---ATVDDIIKIVEDLTRIH 184 (184)
Q Consensus 132 IDGDLIE~FL~--L~~~~q~eV~~~l~~~~~~~~~~----~~---~svedI~k~IEeL~rlH 184 (184)
++=+-+++++. ++.++..++++++|......+.. .. ..+..-...+||+.|+|
T Consensus 7 l~~~~i~~~lG~~i~~~~i~~~L~~Lg~~~~~~~~~~~V~vPs~R~Di~~~~DliEEi~R~~ 68 (75)
T d1jjcb2 7 FRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVTPPSHRLDLRLEEDLVEEVARIQ 68 (75)
T ss_dssp ECHHHHHHHHTCCCCHHHHHHHHHHTTCEEECSSSSEEEECCTTCTTCCSHHHHHHHHHHHH
T ss_pred ECHHHHHHHhCCCCCHHHHHHHHHHcCCceEecCCcEEEecchhccccCCcchHHHHHHHHh
Confidence 67788999998 68999999999998632221111 11 11222256778887764
Done!