AmiGO: BLAST Results


BLAST match view associations BLAST with ddb1 ddb1 ddb1 DNA damage-binding protein 1	protein from Xenopus laevis	3.9e-44
BLAST match view associations BLAST with pic pic pic piccolo	protein from Drosophila melanogaster	1.3e-40
BLAST match view associations BLAST with DDB1 DDB1 DDB1 cDNA FLJ52436, highly similar to DNA damage-binding protein 1	protein from Homo sapiens	1.7e-27
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Homo sapiens	1.7e-27
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Gallus gallus	3.1e-27
BLAST match view associations BLAST with ddb1 ddb1 ddb1 damage specific DNA binding protein 1	gene_product from Danio rerio	4.0e-27
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Homo sapiens	4.5e-27
BLAST match view associations BLAST with DDB1B DDB1B DDB1B damaged DNA binding protein 1B	protein from Arabidopsis thaliana	7.9e-27
BLAST match view associations BLAST with Ddb1 Ddb1 Ddb1 damage specific DNA binding protein 1	protein from Mus musculus	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Bos taurus	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 Uncharacterized protein	protein from Canis lupus familiaris	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Homo sapiens	3.7e-26
BLAST match view associations BLAST with LOC100522239 LOC100522239 LOC100522239 Uncharacterized protein	protein from Sus scrofa	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Chlorocebus aethiops	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Pongo abelii	3.7e-26
BLAST match view associations BLAST with Ddb1 Ddb1 Ddb1 damage-specific DNA binding protein 1, 127kDa	gene from Rattus norvegicus	4.7e-26
BLAST match view associations BLAST with DDB1A DDB1A DDB1A AT4G05420	protein from Arabidopsis thaliana	5.6e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Gallus gallus	7.5e-26
BLAST match view associations BLAST with repE repE repE UV-damaged DNA binding protein1	gene from Dictyostelium discoideum	1.8e-21
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Homo sapiens	7.7e-16
BLAST match view associations BLAST with DDB1 DDB1 DDB1 Uncharacterized protein	protein from Canis lupus familiaris	1.9e-14
BLAST match view associations BLAST with DDB1 DDB1 DDB1 Uncharacterized protein	protein from Homo sapiens	1.9e-14
BLAST match view associations BLAST with ddb-1 ddb-1 ddb-1	gene from Caenorhabditis elegans	6.0e-10
BLAST match view associations BLAST with ddb-1 ddb-1 ddb-1 DNA damage-binding protein 1	protein from Caenorhabditis elegans	6.0e-10
BLAST match view associations BLAST with MGG_16867 MGG_16867 MGG_16867 Uncharacterized protein	protein from Magnaporthe oryzae 70-15	5.2e-06
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy7983
        (184 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|Q6P6Z0 - symbol:ddb1 "DNA damage-binding protei...   306  3.9e-44   2
FB|FBgn0260962 - symbol:pic "piccolo" species:7227 "Droso...   278  1.3e-40   2
UNIPROTKB|B4DG00 - symbol:DDB1 "cDNA FLJ52436, highly sim...   308  1.7e-27   1
UNIPROTKB|F5GZ34 - symbol:DDB1 "DNA damage-binding protei...   308  1.7e-27   1
UNIPROTKB|Q805F9 - symbol:DDB1 "DNA damage-binding protei...   318  3.1e-27   1
ZFIN|ZDB-GENE-040426-1272 - symbol:ddb1 "damage specific ...   317  4.0e-27   1
UNIPROTKB|F8WF81 - symbol:DDB1 "DNA damage-binding protei...   304  4.5e-27   1
TAIR|locus:2127368 - symbol:DDB1B "damaged DNA binding pr...   193  7.9e-27   2
MGI|MGI:1202384 - symbol:Ddb1 "damage specific DNA bindin...   308  3.7e-26   1
UNIPROTKB|A1A4K3 - symbol:DDB1 "DNA damage-binding protei...   308  3.7e-26   1
UNIPROTKB|E2R9E3 - symbol:DDB1 "Uncharacterized protein" ...   308  3.7e-26   1
UNIPROTKB|Q16531 - symbol:DDB1 "DNA damage-binding protei...   308  3.7e-26   1
UNIPROTKB|F1RIE2 - symbol:DDB1 "Uncharacterized protein" ...   308  3.7e-26   1
UNIPROTKB|P33194 - symbol:DDB1 "DNA damage-binding protei...   308  3.7e-26   1
UNIPROTKB|Q5R649 - symbol:DDB1 "DNA damage-binding protei...   308  3.7e-26   1
RGD|621889 - symbol:Ddb1 "damage-specific DNA binding pro...   307  4.7e-26   1
TAIR|locus:2115909 - symbol:DDB1A "damaged DNA binding pr...   183  5.6e-26   2
UNIPROTKB|F1P4I8 - symbol:DDB1 "DNA damage-binding protei...   305  7.5e-26   1
UNIPROTKB|F1NVV2 - symbol:DDB1 "DNA damage-binding protei...   297  5.4e-25   1
UNIPROTKB|F1NVV3 - symbol:DDB1 "DNA damage-binding protei...   287  6.2e-24   1
UNIPROTKB|F1M680 - symbol:Ddb1 "DNA damage-binding protei...   270  1.3e-22   1
UNIPROTKB|E1C725 - symbol:DDB1 "DNA damage-binding protei...   254  9.0e-22   1
DICTYBASE|DDB_G0286013 - symbol:repE "UV-damaged DNA bind...   165  1.8e-21   2
UNIPROTKB|F5H581 - symbol:DDB1 "DNA damage-binding protei...   198  7.7e-16   1
UNIPROTKB|J9NVR7 - symbol:DDB1 "Uncharacterized protein" ...   198  1.9e-14   1
UNIPROTKB|F5GY55 - symbol:DDB1 "Uncharacterized protein" ...   198  1.9e-14   1
WB|WBGene00010890 - symbol:ddb-1 species:6239 "Caenorhabd...   156  6.0e-10   1
UNIPROTKB|Q21554 - symbol:ddb-1 "DNA damage-binding prote...   156  6.0e-10   1
POMBASE|SPAC17H9.10c - symbol:ddb1 "damaged DNA binding p...   112  5.0e-06   2
UNIPROTKB|G4N4E2 - symbol:MGG_16867 "Uncharacterized prot...   108  5.2e-06   2


>UNIPROTKB|Q6P6Z0 [details] [associations]
            symbol:ddb1 "DNA damage-binding protein 1" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
            ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
            GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
            CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:BC061946
            RefSeq:NP_001083624.1 UniGene:Xl.23906 PRIDE:Q6P6Z0 GeneID:399026
            KEGG:xla:399026 Xenbase:XB-GENE-967911 Uniprot:Q6P6Z0
        Length = 1140

 Score = 306 (112.8 bits), Expect = 3.9e-44, Sum P(2) = 3.9e-44
 Identities = 60/104 (57%), Positives = 78/104 (75%)

Query:    81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
             GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   GFIDGDLIESF
Sbjct:  1038 GLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF 1097

Query:   141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             LD++   M+ +   LQI   GS  KR+ TVDD+IK+VE+LTRIH
Sbjct:  1098 LDISRPKMQEVIANLQIDD-GSGMKRETTVDDLIKVVEELTRIH 1140

 Score = 201 (75.8 bits), Expect = 3.9e-44, Sum P(2) = 3.9e-44
 Identities = 39/55 (70%), Positives = 48/55 (87%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA 70
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLFESPRKICYQEVSQCFGVLSSRIEVQDA 745


>FB|FBgn0260962 [details] [associations]
            symbol:pic "piccolo" species:7227 "Drosophila melanogaster"
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0006289
            "nucleotide-excision repair" evidence=ISS;NAS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IMP] [GO:0035220 "wing disc development"
            evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0007307 "eggshell
            chorion gene amplification" evidence=IDA] [GO:0007095 "mitotic G2
            DNA damage checkpoint" evidence=IGI] InterPro:IPR004871
            Pfam:PF03178 UniPathway:UPA00143 EMBL:AE014297 GO:GO:0005634
            GO:GO:0005737 GO:GO:0007095 GO:GO:0043161 GO:GO:0003677
            GO:GO:0006281 GO:GO:0035220 GO:GO:0042787 GO:GO:0007307
            eggNOG:NOG247734 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
            HSSP:Q16531 EMBL:AF132145 RefSeq:NP_650257.1 UniGene:Dm.3215
            ProteinModelPortal:Q9XYZ5 SMR:Q9XYZ5 STRING:Q9XYZ5 PaxDb:Q9XYZ5
            PRIDE:Q9XYZ5 EnsemblMetazoa:FBtr0082709 GeneID:41611
            KEGG:dme:Dmel_CG7769 UCSC:CG7769-RA CTD:41611 FlyBase:FBgn0260962
            InParanoid:Q9XYZ5 OrthoDB:EOG4S1RP0 PhylomeDB:Q9XYZ5
            GenomeRNAi:41611 NextBio:824642 Bgee:Q9XYZ5 Uniprot:Q9XYZ5
        Length = 1140

 Score = 278 (102.9 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
 Identities = 61/129 (47%), Positives = 85/129 (65%)

Query:    56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
             Q  G  TT I+      + N  +  G+VTQI  + Y FL  L+ERL + I+SVG+IEH++
Sbjct:  1016 QNVGERTTPINGCVLYGTCNGAI--GIVTQIPQDFYDFLHGLEERLKKIIKSVGKIEHTY 1073

Query:   116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
             +R+F  + K +  EGFIDGDLIESFLDL+   M+    GL++T  G   ++ A V+D+IK
Sbjct:  1074 YRNFQINSKVEPSEGFIDGDLIESFLDLSRDKMRDAVQGLELTLNGE--RKSADVEDVIK 1131

Query:   176 IVEDLTRIH 184
             IVEDLTR+H
Sbjct:  1132 IVEDLTRMH 1140

 Score = 196 (74.1 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
 Identities = 40/52 (76%), Positives = 42/52 (80%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 67
             LALA  +    GTIDEIQKLHIRTVPLGE PRRIAYQESSQTF V T RID+
Sbjct:   690 LALANKNAVILGTIDEIQKLHIRTVPLGEGPRRIAYQESSQTFAVSTLRIDV 741


>UNIPROTKB|B4DG00 [details] [associations]
            symbol:DDB1 "cDNA FLJ52436, highly similar to DNA
            damage-binding protein 1" species:9606 "Homo sapiens" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
            GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:AP003108
            UniGene:Hs.290758 HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037
            EMBL:AK294341 IPI:IPI00909177 SMR:B4DG00 STRING:B4DG00
            Ensembl:ENST00000450997 UCSC:uc010rle.1 HOGENOM:HOG000069916
            HOVERGEN:HBG102355 Uniprot:B4DG00
        Length = 451

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   282 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 339

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:   340 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 397

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:   398 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 451


>UNIPROTKB|F5GZ34 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
            signaling pathway" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
            GO:GO:0005634 GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01010454
            ProteinModelPortal:F5GZ34 SMR:F5GZ34 Ensembl:ENST00000538470
            ArrayExpress:F5GZ34 Bgee:F5GZ34 Uniprot:F5GZ34
        Length = 187

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:    18 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 75

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:    76 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 133

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:   134 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 187


>UNIPROTKB|Q805F9 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016567
            "protein ubiquitination" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0080008
            "Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0031465
            "Cul4B-RING ubiquitin ligase complex" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=ISS] InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005737 GO:GO:0005654
            GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
            GO:GO:0016567 Reactome:REACT_115612 GO:GO:0031464 GO:GO:0031465
            eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 CTD:1642
            HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 HSSP:Q16531 EMBL:AB074298
            EMBL:AJ719779 IPI:IPI00597295 RefSeq:NP_989547.1 UniGene:Gga.12977
            STRING:Q805F9 PRIDE:Q805F9 GeneID:374050 KEGG:gga:374050
            NextBio:20813572 Uniprot:Q805F9
        Length = 1140

 Score = 318 (117.0 bits), Expect = 3.1e-27, P = 3.1e-27
 Identities = 78/177 (44%), Positives = 107/177 (60%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLHIRTVPLGEAPRRI-AYQESS---QTFGVITTRIDI 67
             AF+L +   DS     T DE ++ H++ V L      +  +   S   Q  G  +T    
Sbjct:   971 AFNLFVCQKDSA---ATTDE-ERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGETSTPTQG 1026

Query:    68 QEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDA 127
                  ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++ 
Sbjct:  1027 SVLFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEP 1084

Query:   128 CEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
               GFIDGDLIESFLD++   M+ +   LQI   GS  KR+ATVDD+IKIVE+LTRIH
Sbjct:  1085 ATGFIDGDLIESFLDISRPKMQEVVANLQIDD-GSGMKREATVDDLIKIVEELTRIH 1140

 Score = 202 (76.2 bits), Expect = 7.5e-15, P = 7.5e-15
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA--- 72
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A     
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGGTT 750

Query:    73 SLNSFVST-GLVTQISP-ELYS 92
             +L    ST  L + +S  +L+S
Sbjct:   751 ALRPSASTQALSSSVSTSKLFS 772


>ZFIN|ZDB-GENE-040426-1272 [details] [associations]
            symbol:ddb1 "damage specific DNA binding protein
            1" species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 ZFIN:ZDB-GENE-040426-1272
            GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 EMBL:JQ692623
            UniGene:Dr.77970 Uniprot:I1XUS8
        Length = 1140

 Score = 317 (116.6 bits), Expect = 4.0e-27, P = 4.0e-27
 Identities = 81/175 (46%), Positives = 106/175 (60%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQESS-QTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE     ++     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFSHGSLVLQNLGESSTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   YS L DLQ RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LFGTVNGMI--GLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERKTEQAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLDL    M+ + + LQI   GS  KR+ATVD++IKIVE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDLGRAKMQEVVSTLQIDD-GSGMKREATVDEVIKIVEELTRIH 1140

 Score = 199 (75.1 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 38/58 (65%), Positives = 49/58 (84%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADAS 73
             LALA +ST T GTIDEIQKLHIRTVPL E+P+RI YQE SQ FGV+++R+++Q+A  +
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPKRICYQEVSQCFGVLSSRVEMQDASGT 748


>UNIPROTKB|F8WF81 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0016055 "Wnt receptor
            signaling pathway" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
            GO:GO:0005634 GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00942006
            ProteinModelPortal:F8WF81 SMR:F8WF81 Ensembl:ENST00000451943
            ArrayExpress:F8WF81 Bgee:F8WF81 Uniprot:F8WF81
        Length = 127

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 63/129 (48%), Positives = 85/129 (65%)

Query:    56 QTFGVITTRIDIQEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF 115
             Q  G  +T         ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSF
Sbjct:     2 QNLGETSTPTQGSVLFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSF 59

Query:   116 WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIK 175
             WRSF+T+ K++   GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK
Sbjct:    60 WRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIK 118

Query:   176 IVEDLTRIH 184
             +VE+LTRIH
Sbjct:   119 VVEELTRIH 127


>TAIR|locus:2127368 [details] [associations]
            symbol:DDB1B "damaged DNA binding protein 1B"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0009793 "embryo
            development ending in seed dormancy" evidence=IMP] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=RCA]
            [GO:0006281 "DNA repair" evidence=RCA] [GO:0007062 "sister
            chromatid cohesion" evidence=RCA] [GO:0009880 "embryonic pattern
            specification" evidence=RCA] [GO:0010072 "primary shoot apical
            meristem specification" evidence=RCA] [GO:0010100 "negative
            regulation of photomorphogenesis" evidence=RCA] [GO:0010162 "seed
            dormancy process" evidence=RCA] [GO:0010431 "seed maturation"
            evidence=RCA] [GO:0010564 "regulation of cell cycle process"
            evidence=RCA] [GO:0045595 "regulation of cell differentiation"
            evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
            [GO:0048608 "reproductive structure development" evidence=RCA]
            [GO:0048825 "cotyledon development" evidence=RCA] [GO:0051301 "cell
            division" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
            EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
            SUPFAM:SSF50978 EMBL:AL161554 GO:GO:0003677 GO:GO:0006281
            GO:GO:0009793 GO:GO:0016567 GO:GO:0009585 EMBL:AL021960
            UniGene:At.32663 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
            ProtClustDB:CLSN2685347 EMBL:AK220648 EMBL:AK229805 IPI:IPI00536598
            PIR:T04941 RefSeq:NP_193842.1 ProteinModelPortal:O49552 SMR:O49552
            DIP:DIP-46981N IntAct:O49552 STRING:O49552 PaxDb:O49552
            PRIDE:O49552 EnsemblPlants:AT4G21100.1 GeneID:827857
            KEGG:ath:AT4G21100 GeneFarm:4661 TAIR:At4g21100 InParanoid:O49552
            OMA:DRPAVIY PhylomeDB:O49552 Genevestigator:O49552
            GermOnline:AT4G21100 Uniprot:O49552
        Length = 1088

 Score = 193 (73.0 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
 Identities = 41/104 (39%), Positives = 63/104 (60%)

Query:    81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
             G++  +  E Y+FL  LQ  L + I+ VG + H  WRSFN + ++   +G++DGDLIESF
Sbjct:   996 GVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESF 1055

Query:   141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             LDL+   M+ I+ G+           D  V+++ K VE+LTR+H
Sbjct:  1056 LDLSRGKMEEISKGM-----------DVQVEELCKRVEELTRLH 1088

 Score = 150 (57.9 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
 Identities = 31/63 (49%), Positives = 43/63 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LA+A +   T GTID+IQKLHIRT+P+GE  RRI +QE ++TF +   R +   A+ S +
Sbjct:   685 LAIAREGELTIGTIDDIQKLHIRTIPIGEHARRICHQEQTRTFAISCLRNE-PSAEESES 743

Query:    76 SFV 78
              FV
Sbjct:   744 HFV 746


>MGI|MGI:1202384 [details] [associations]
            symbol:Ddb1 "damage specific DNA binding protein 1"
            species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
            evidence=ISO] [GO:0031465 "Cul4B-RING ubiquitin ligase complex"
            evidence=ISO] [GO:0042787 "protein ubiquitination involved in
            ubiquitin-dependent protein catabolic process" evidence=ISO]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0080008 "Cul4-RING ubiquitin ligase
            complex" evidence=ISO] InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 UniPathway:UPA00143 MGI:MGI:1202384 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
            GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 KO:K10610 OMA:CALGDGS
            CTD:1642 GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460
            HSSP:Q16531 ChiTaRS:DDB1 EMBL:AB026432 EMBL:AF159853 EMBL:AK146522
            EMBL:AK152228 EMBL:AK154303 EMBL:AK155020 EMBL:AK155920
            EMBL:AK157491 EMBL:BC002210 EMBL:BC009661 IPI:IPI00316740
            PIR:JC7152 RefSeq:NP_056550.1 UniGene:Mm.289915 UniGene:Mm.466856
            ProteinModelPortal:Q3U1J4 SMR:Q3U1J4 IntAct:Q3U1J4 STRING:Q3U1J4
            PaxDb:Q3U1J4 PRIDE:Q3U1J4 Ensembl:ENSMUST00000025649 GeneID:13194
            KEGG:mmu:13194 UCSC:uc008gqm.1 InParanoid:Q3U1J4 NextBio:283320
            Bgee:Q3U1J4 CleanEx:MM_DDB1 Genevestigator:Q3U1J4 Uniprot:Q3U1J4
        Length = 1140

 Score = 308 (113.5 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGEASTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 1140

 Score = 199 (75.1 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 40/77 (51%), Positives = 54/77 (70%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q++     
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDSSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>UNIPROTKB|A1A4K3 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9913
            "Bos taurus" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
            evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
            evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin
            ligase complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0042787 "protein
            ubiquitination involved in ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] [GO:0000075 "cell cycle checkpoint" evidence=IEA]
            [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
            UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
            GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
            GO:GO:0042787 GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
            eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
            EMBL:BC126629 IPI:IPI00713891 RefSeq:NP_001073731.1
            UniGene:Bt.62917 STRING:A1A4K3 PRIDE:A1A4K3
            Ensembl:ENSBTAT00000028740 GeneID:511951 KEGG:bta:511951 CTD:1642
            GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460 InParanoid:A1A4K3
            OrthoDB:EOG4KPT91 NextBio:20870176 Uniprot:A1A4K3
        Length = 1140

 Score = 308 (113.5 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 1140

 Score = 198 (74.8 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>UNIPROTKB|E2R9E3 [details] [associations]
            symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IEA] [GO:0042787 "protein
            ubiquitination involved in ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
            "cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
            GO:GO:0031465 KO:K10610 OMA:CALGDGS CTD:1642
            GeneTree:ENSGT00530000063396 EMBL:AAEX03011677 RefSeq:XP_533275.2
            Ensembl:ENSCAFT00000025824 GeneID:476067 KEGG:cfa:476067
            NextBio:20851798 Uniprot:E2R9E3
        Length = 1140

 Score = 308 (113.5 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 1140

 Score = 198 (74.8 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>UNIPROTKB|Q16531 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0000075 "cell cycle checkpoint" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0042787 "protein
            ubiquitination involved in ubiquitin-dependent protein catabolic
            process" evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=IDA] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IMP] [GO:0080008 "Cul4-RING
            ubiquitin ligase complex" evidence=IDA] [GO:0003677 "DNA binding"
            evidence=TAS] [GO:0003684 "damaged DNA binding" evidence=TAS]
            [GO:0000718 "nucleotide-excision repair, DNA damage removal"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
            "DNA repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair"
            evidence=TAS] Reactome:REACT_216 InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 EMBL:U32986
            GO:GO:0005737 GO:GO:0019048 GO:GO:0005654 GO:GO:0043161
            GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003684 EMBL:CH471076
            GO:GO:0042787 GO:GO:0000075 GO:GO:0000718 EMBL:AP003108
            GO:GO:0031464 PDB:2HYE PDB:4A0K PDBsum:2HYE PDBsum:4A0K PDB:4A0L
            PDBsum:4A0L GO:GO:0031465 PDB:3I7P PDBsum:3I7P PDB:3I8C PDBsum:3I8C
            PDB:3I89 PDBsum:3I89 PDB:3I7O PDBsum:3I7O PDB:3I8E PDBsum:3I8E
            eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
            CTD:1642 HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 EMBL:U18299
            EMBL:L40326 EMBL:AJ002955 EMBL:AK312436 EMBL:AY960579 EMBL:BC011686
            EMBL:BC050530 EMBL:BC051764 IPI:IPI00293464 PIR:I38908
            RefSeq:NP_001914.3 UniGene:Hs.290758 PDB:2B5L PDB:2B5M PDB:2B5N
            PDB:3E0C PDB:3EI1 PDB:3EI2 PDB:3EI3 PDB:3EI4 PDB:3I7H PDB:3I7K
            PDB:3I7L PDB:3I7N PDB:4A08 PDB:4A09 PDB:4A0A PDB:4A0B PDB:4A11
            PDB:4E54 PDB:4E5Z PDBsum:2B5L PDBsum:2B5M PDBsum:2B5N PDBsum:3E0C
            PDBsum:3EI1 PDBsum:3EI2 PDBsum:3EI3 PDBsum:3EI4 PDBsum:3I7H
            PDBsum:3I7K PDBsum:3I7L PDBsum:3I7N PDBsum:4A08 PDBsum:4A09
            PDBsum:4A0A PDBsum:4A0B PDBsum:4A11 PDBsum:4E54 PDBsum:4E5Z
            ProteinModelPortal:Q16531 SMR:Q16531 DIP:DIP-430N IntAct:Q16531
            MINT:MINT-1134697 STRING:Q16531 PhosphoSite:Q16531 PaxDb:Q16531
            PRIDE:Q16531 Ensembl:ENST00000301764 GeneID:1642 KEGG:hsa:1642
            UCSC:uc001nrc.4 GeneCards:GC11M061066 H-InvDB:HIX0171380
            HGNC:HGNC:2717 HPA:CAB032821 MIM:600045 neXtProt:NX_Q16531
            PharmGKB:PA27187 InParanoid:Q16531 ChiTaRS:DDB1
            EvolutionaryTrace:Q16531 GenomeRNAi:1642 NextBio:6750
            ArrayExpress:Q16531 Bgee:Q16531 CleanEx:HS_DDB1
            Genevestigator:Q16531 GermOnline:ENSG00000167986 Uniprot:Q16531
        Length = 1140

 Score = 308 (113.5 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 1140

 Score = 198 (74.8 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>UNIPROTKB|F1RIE2 [details] [associations]
            symbol:DDB1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0042787 "protein
            ubiquitination involved in ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
            "cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
            GO:GO:0031465 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
            EMBL:CU462918 RefSeq:XP_003122699.1 Ensembl:ENSSSCT00000014314
            GeneID:100522239 KEGG:ssc:100522239 Uniprot:F1RIE2
        Length = 1140

 Score = 308 (113.5 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 1140

 Score = 198 (74.8 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>UNIPROTKB|P33194 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9534
            "Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING
            ubiquitin ligase complex" evidence=ISS] [GO:0031465 "Cul4B-RING
            ubiquitin ligase complex" evidence=ISS] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=ISS]
            [GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
            UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
            Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281 GO:GO:0016567
            GO:GO:0031464 GO:GO:0031465 HOVERGEN:HBG005460 EMBL:L20216
            PIR:S38777 PRIDE:P33194 Uniprot:P33194
        Length = 1140

 Score = 308 (113.5 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 1140

 Score = 198 (74.8 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>UNIPROTKB|Q5R649 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9601
            "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
            complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
            complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
            ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
            GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
            CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:CR860647
            RefSeq:NP_001126613.1 UniGene:Pab.18111 GeneID:100173610
            KEGG:pon:100173610 InParanoid:Q5R649 Uniprot:Q5R649
        Length = 1140

 Score = 308 (113.5 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 1140

 Score = 198 (74.8 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>RGD|621889 [details] [associations]
            symbol:Ddb1 "damage-specific DNA binding protein 1, 127kDa"
            species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
            checkpoint" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IMP]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
            [GO:0006281 "DNA repair" evidence=TAS] [GO:0016055 "Wnt receptor
            signaling pathway" evidence=IEA;ISO] [GO:0016567 "protein
            ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
            ligase complex" evidence=IEA;ISO;ISS] [GO:0031465 "Cul4B-RING
            ubiquitin ligase complex" evidence=IEA;ISO;ISS] [GO:0042787
            "protein ubiquitination involved in ubiquitin-dependent protein
            catabolic process" evidence=IEA;ISO] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process"
            evidence=IEA;ISO;ISS] [GO:0080008 "Cul4-RING ubiquitin ligase
            complex" evidence=ISO;ISS] InterPro:IPR004871 InterPro:IPR015943
            Pfam:PF03178 UniPathway:UPA00143 RGD:621889 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
            GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 HOGENOM:HOG000007241
            HOVERGEN:HBG005460 HSSP:Q16531 EMBL:AJ277077 IPI:IPI00324451
            UniGene:Rn.8402 IntAct:Q9ESW0 MINT:MINT-4784948 STRING:Q9ESW0
            PhosphoSite:Q9ESW0 PRIDE:Q9ESW0 UCSC:RGD:621889 InParanoid:Q9ESW0
            ArrayExpress:Q9ESW0 Genevestigator:Q9ESW0 Uniprot:Q9ESW0
        Length = 1140

 Score = 307 (113.1 bits), Expect = 4.7e-26, P = 4.7e-26
 Identities = 76/175 (43%), Positives = 103/175 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   971 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 1028

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACE 129
                ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHSFWRSF+T+ K++   
Sbjct:  1029 LLGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPAT 1086

Query:   130 GFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:  1087 GFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 1140

 Score = 190 (71.9 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 38/77 (49%), Positives = 52/77 (67%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA  ST T GT++EIQKLHIRTVP+ E+PR+I YQE SQ FGV++TRI++Q+      
Sbjct:   691 LALANTSTLTIGTMNEIQKLHIRTVPIYESPRKICYQEVSQCFGVLSTRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>TAIR|locus:2115909 [details] [associations]
            symbol:DDB1A "damaged DNA binding protein 1A"
            species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI] [GO:0010100
            "negative regulation of photomorphogenesis" evidence=IGI;RCA]
            [GO:0045892 "negative regulation of transcription, DNA-dependent"
            evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0000278 "mitotic cell
            cycle" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
            formation" evidence=RCA] [GO:0003002 "regionalization"
            evidence=RCA] [GO:0006281 "DNA repair" evidence=RCA] [GO:0006486
            "protein glycosylation" evidence=RCA] [GO:0007155 "cell adhesion"
            evidence=RCA] [GO:0008284 "positive regulation of cell
            proliferation" evidence=RCA] [GO:0009630 "gravitropism"
            evidence=RCA] [GO:0009639 "response to red or far red light"
            evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
            [GO:0033043 "regulation of organelle organization" evidence=RCA]
            [GO:0045010 "actin nucleation" evidence=RCA] [GO:0048449 "floral
            organ formation" evidence=RCA] [GO:0048608 "reproductive structure
            development" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005829
            GO:GO:0005634 GO:GO:0045892 EMBL:CP002687 GenomeReviews:CT486007_GR
            Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003677 GO:GO:0006281
            GO:GO:0016567 GO:GO:0009585 EMBL:AL161503 GO:GO:0080008
            GO:GO:0010100 EMBL:AY074257 EMBL:BT001905 EMBL:AK230366
            IPI:IPI00548104 PIR:B85068 RefSeq:NP_192451.1 UniGene:At.32663
            UniGene:At.47587 ProteinModelPortal:Q9M0V3 DIP:DIP-40455N
            IntAct:Q9M0V3 STRING:Q9M0V3 PaxDb:Q9M0V3 PRIDE:Q9M0V3 ProMEX:Q9M0V3
            EnsemblPlants:AT4G05420.1 GeneID:825890 KEGG:ath:AT4G05420
            GeneFarm:4660 TAIR:At4g05420 eggNOG:NOG247734 HOGENOM:HOG000007241
            InParanoid:Q9M0V3 KO:K10610 OMA:CALGDGS PhylomeDB:Q9M0V3
            ProtClustDB:CLSN2685347 Genevestigator:Q9M0V3 GermOnline:AT4G05420
            Uniprot:Q9M0V3
        Length = 1088

 Score = 183 (69.5 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
 Identities = 39/104 (37%), Positives = 60/104 (57%)

Query:    81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
             G++  +  E Y+FL  LQ  L + I+ VG + H  WRSFN + ++     F+DGDLIESF
Sbjct:   996 GVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESF 1055

Query:   141 LDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             LDL+   M+ I+  + +            V+++ K VE+LTR+H
Sbjct:  1056 LDLSRNKMEDISKSMNVQ-----------VEELCKRVEELTRLH 1088

 Score = 152 (58.6 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
             LA+A +   T GTID+IQKLHIRT+PLGE  RRI +QE ++TFG+
Sbjct:   685 LAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICHQEQTRTFGI 729


>UNIPROTKB|F1P4I8 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
            GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
            EMBL:AADN02017119 IPI:IPI00818299 Ensembl:ENSGALT00000008352
            ArrayExpress:F1P4I8 Uniprot:F1P4I8
        Length = 1120

 Score = 305 (112.4 bits), Expect = 7.5e-26, P = 7.5e-26
 Identities = 76/177 (42%), Positives = 106/177 (59%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLHIRTVPLGEAPRRI-AYQESS---QTFGVITTRIDI 67
             AF+L +   DS     T DE ++ H++ V L      +  +   S   Q  G  +T    
Sbjct:   951 AFNLFVCQKDSA---ATTDE-ERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGEKSTPTQG 1006

Query:    68 QEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDA 127
                  ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEH+ WRSF+T+ K++ 
Sbjct:  1007 SVLFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHATWRSFHTERKTEP 1064

Query:   128 CEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
               GFIDGDLIESFLD++   M+ +   LQI   GS  KR+ATVDD+IKIVE+LTRIH
Sbjct:  1065 ATGFIDGDLIESFLDISRPKMQEVVANLQIDD-GSGMKREATVDDLIKIVEELTRIH 1120

 Score = 202 (76.2 bits), Expect = 7.4e-15, P = 7.4e-15
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA--- 72
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A     
Sbjct:   671 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGGTT 730

Query:    73 SLNSFVST-GLVTQISP-ELYS 92
             +L    ST  L + +S  +L+S
Sbjct:   731 ALRPSASTQALSSSVSTSKLFS 752


>UNIPROTKB|F1NVV2 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
            checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
            [GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
            protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
            GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
            GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
            GO:GO:0031465 OMA:CALGDGS GeneTree:ENSGT00530000063396
            IPI:IPI00597295 EMBL:AADN02017118 EMBL:AADN02017119
            Ensembl:ENSGALT00000040605 ArrayExpress:F1NVV2 Uniprot:F1NVV2
        Length = 1123

 Score = 297 (109.6 bits), Expect = 5.4e-25, P = 5.4e-25
 Identities = 77/180 (42%), Positives = 106/180 (58%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLHIRTVPLGEAPRRI-AYQESS---QTFGVITTRIDI 67
             AF+L +   DS     T DE ++ H++ V L      +  +   S   Q  G  +T    
Sbjct:   951 AFNLFVCQKDSA---ATTDE-ERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGEKSTPTQG 1006

Query:    68 QEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF---WRSFNTDVK 124
                  ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHS    WRSF+T+ K
Sbjct:  1007 SVLFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLYATWRSFHTERK 1064

Query:   125 SDACEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             ++   GFIDGDLIESFLD++   M+ +   LQI   GS  KR+ATVDD+IKIVE+LTRIH
Sbjct:  1065 TEPATGFIDGDLIESFLDISRPKMQEVVANLQIDD-GSGMKREATVDDLIKIVEELTRIH 1123

 Score = 202 (76.2 bits), Expect = 7.4e-15, P = 7.4e-15
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA--- 72
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A     
Sbjct:   671 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGGTT 730

Query:    73 SLNSFVST-GLVTQISP-ELYS 92
             +L    ST  L + +S  +L+S
Sbjct:   731 ALRPSASTQALSSSVSTSKLFS 752


>UNIPROTKB|F1NVV3 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
            GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
            EMBL:AADN02017119 IPI:IPI00821712 Ensembl:ENSGALT00000040604
            ArrayExpress:F1NVV3 Uniprot:F1NVV3
        Length = 1119

 Score = 287 (106.1 bits), Expect = 6.2e-24, P = 6.2e-24
 Identities = 75/177 (42%), Positives = 105/177 (59%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLHIRTVPLGEAPRRI-AYQESS---QTFGVITTRIDI 67
             AF+L +   DS     T DE ++ H++ V L      +  +   S   Q  G  +T    
Sbjct:   951 AFNLFVCQKDSA---ATTDE-ERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGEKSTPTQG 1006

Query:    68 QEADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDA 127
                  ++N  +  GLVT +S   Y+ L D+Q RL + I+SVG+IEHS + SF+T+ K++ 
Sbjct:  1007 SVLFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSLY-SFHTERKTEP 1063

Query:   128 CEGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
               GFIDGDLIESFLD++   M+ +   LQI   GS  KR+ATVDD+IKIVE+LTRIH
Sbjct:  1064 ATGFIDGDLIESFLDISRPKMQEVVANLQIDD-GSGMKREATVDDLIKIVEELTRIH 1119

 Score = 202 (76.2 bits), Expect = 7.3e-15, P = 7.3e-15
 Identities = 46/82 (56%), Positives = 60/82 (73%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADA--- 72
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+A     
Sbjct:   671 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDASGGTT 730

Query:    73 SLNSFVST-GLVTQISP-ELYS 92
             +L    ST  L + +S  +L+S
Sbjct:   731 ALRPSASTQALSSSVSTSKLFS 752


>UNIPROTKB|F1M680 [details] [associations]
            symbol:Ddb1 "DNA damage-binding protein 1" species:10116
            "Rattus norvegicus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 RGD:621889
            GO:GO:0005634 Gene3D:2.130.10.10 GO:GO:0003676 IPI:IPI00950036
            Ensembl:ENSRNOT00000063867 ArrayExpress:F1M680 Uniprot:F1M680
        Length = 600

 Score = 270 (100.1 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 71/176 (40%), Positives = 99/176 (56%)

Query:    13 AFHLALAT-DSTFTFGTIDEIQKLH-IRTVPLGEAPRRIAYQES-SQTFGVITTRIDIQE 69
             AF+L +   DS  T  T +E Q L  +    LGE      +     Q  G  +T      
Sbjct:   430 AFNLFVCQKDSAAT--TDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSV 487

Query:    70 ADASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSF-WRSFNTDVKSDAC 128
                ++N  +  GLVT +S   Y+ L D+Q RL + I+S+  + H F WRSF+T+ K++  
Sbjct:   488 LFGTVNGMI--GLVTSLSESWYNLLLDMQNRLNKVIKSLCSLTHLFTWRSFHTERKTEPA 545

Query:   129 EGFIDGDLIESFLDLNIKDMKSIATGLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
              GFIDGDLIESFLD++   M+ +   LQ    GS  KR+AT DD+IK+VE+LTRIH
Sbjct:   546 TGFIDGDLIESFLDISRPKMQEVVANLQYDD-GSGMKREATADDLIKVVEELTRIH 600

 Score = 198 (74.8 bits), Expect = 7.6e-15, P = 7.6e-15
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   150 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 209

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   210 ALRPSASTQALSSSVSS 226


>UNIPROTKB|E1C725 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9031
            "Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
            checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
            [GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
            [GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
            protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            InterPro:IPR004871 Pfam:PF03178 GO:GO:0005634 GO:GO:0005737
            GO:GO:0043161 GO:GO:0016055 GO:GO:0003676 GO:GO:0042787
            GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
            GeneTree:ENSGT00530000063396 EMBL:AADN02017118 EMBL:AADN02017119
            IPI:IPI00820296 Ensembl:ENSGALT00000040602 ArrayExpress:E1C725
            Uniprot:E1C725
        Length = 90

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 53/91 (58%), Positives = 68/91 (74%)

Query:    97 LQERLAQTIRSVGRIEHSF---WRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIAT 153
             +Q RL + I+SVG+IEHS    WRSF+T+ K++   GFIDGDLIESFLD++   M+ +  
Sbjct:     1 MQNRLNKVIKSVGKIEHSLYATWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVA 60

Query:   154 GLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
              LQI   GS  KR+ATVDD+IKIVE+LTRIH
Sbjct:    61 NLQIDD-GSGMKREATVDDLIKIVEELTRIH 90


>DICTYBASE|DDB_G0286013 [details] [associations]
            symbol:repE "UV-damaged DNA binding protein1"
            species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
            evidence=IEA;ISS;IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP]
            [GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003684
            "damaged DNA binding" evidence=ISS] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
            InterPro:IPR017986 InterPro:IPR004871 Pfam:PF03178
            UniPathway:UPA00143 dictyBase:DDB_G0286013 GO:GO:0005634
            GO:GO:0005737 GenomeReviews:CM000153_GR SUPFAM:SSF50978
            GO:GO:0003684 GO:GO:0016567 EMBL:AAFI02000085 GO:GO:0006289
            eggNOG:NOG247734 KO:K10610 OMA:CALGDGS EMBL:U50042 PIR:S71092
            RefSeq:XP_637896.2 STRING:B0M0P5 EnsemblProtists:DDB0191144
            GeneID:8625406 KEGG:ddi:DDB_G0286013 ProtClustDB:CLSZ2430134
            Uniprot:B0M0P5
        Length = 1181

 Score = 165 (63.1 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 38/88 (43%), Positives = 49/88 (55%)

Query:    72 ASLNSFVSTGLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGF 131
             AS+N   S G+V  IS E + F   LQ+ L Q +R VG   H  WR+F+ D  +   + F
Sbjct:  1081 ASVNG--SIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNF 1138

Query:   132 IDGDLIESFLDLNIKDMKSIATGLQITP 159
             IDGDLIE+FLDL  +        L ITP
Sbjct:  1139 IDGDLIETFLDLKYESQLKAVADLGITP 1166

 Score = 128 (50.1 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 26/50 (52%), Positives = 35/50 (70%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAP-RRIAYQESSQTFGVITTR 64
             +A+AT ++ T GTIDEIQKLHI+T+PL E   RRI + E    + VIT +
Sbjct:   747 MAIATTNSLTIGTIDEIQKLHIKTIPLNEEMGRRIVHLEDHSCYAVITVK 796


>UNIPROTKB|F5H581 [details] [associations]
            symbol:DDB1 "DNA damage-binding protein 1" species:9606
            "Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
            evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
            HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909251
            ProteinModelPortal:F5H581 SMR:F5H581 Ensembl:ENST00000535147
            ArrayExpress:F5H581 Bgee:F5H581 Uniprot:F5H581
        Length = 267

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   158 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 217

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   218 ALRPSASTQALSSSVSS 234


>UNIPROTKB|J9NVR7 [details] [associations]
            symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
            GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AAEX03011677
            Ensembl:ENSCAFT00000049486 Uniprot:J9NVR7
        Length = 1084

 Score = 198 (74.8 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>UNIPROTKB|F5GY55 [details] [associations]
            symbol:DDB1 "Uncharacterized protein" species:9606 "Homo
            sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
            GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717 ChiTaRS:DDB1
            EMBL:AP003037 IPI:IPI00977083 SMR:F5GY55 Ensembl:ENST00000540166
            Uniprot:F5GY55
        Length = 1092

 Score = 198 (74.8 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLN 75
             LALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+      
Sbjct:   691 LALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTT 750

Query:    76 SFVSTGLVTQISPELYS 92
             +   +     +S  + S
Sbjct:   751 ALRPSASTQALSSSVSS 767


>WB|WBGene00010890 [details] [associations]
            symbol:ddb-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0009792 "embryo development ending
            in birth or egg hatching" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040035
            "hermaphrodite genitalia development" evidence=IMP] [GO:0030163
            "protein catabolic process" evidence=IMP] [GO:0007276 "gamete
            generation" evidence=IMP] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR004871 Pfam:PF03178 UniPathway:UPA00143
            GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0005737
            GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0006281
            GO:GO:0040011 GO:GO:0016567 GO:GO:0007049 GO:GO:0040035
            InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163 GO:GO:0007276
            eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
            GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855 PIR:T23798
            RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
            DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
            PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
            GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
            WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
        Length = 1134

 Score = 156 (60.0 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 34/94 (36%), Positives = 58/94 (61%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID--IQEADAS 73
             L ++  ++  FGT+D+IQK+H+R++P+GE+  RIAYQ+S+ T+GV + R +   +   AS
Sbjct:   693 LVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTSTYGVCSNRTESKAERVFAS 752

Query:    74 LNSFVSTGLVTQISPELYSFLFDLQERLAQTIRS 107
              N+ V++    Q  P++ S   D+ E    T  S
Sbjct:   753 KNALVTS----QSRPKVASTRADMDESPPNTTSS 782

 Score = 156 (60.0 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 34/108 (31%), Positives = 66/108 (61%)

Query:    81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
             G++ QI  +   FL  +++ +A ++++   IEHS +R+F    +++   GF+DGDL+ES 
Sbjct:  1033 GMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPPSGFVDGDLVESI 1092

Query:   141 LDLNIKDMKSIATGL--QITPPG--STTKRDATVDDIIKIVEDLTRIH 184
             LD++    +S+A  +  +++  G   +  RD    +I+K++EDL R+H
Sbjct:  1093 LDMD----RSVAMDILSKVSDKGWDPSLPRDPV--EILKVIEDLARMH 1134


>UNIPROTKB|Q21554 [details] [associations]
            symbol:ddb-1 "DNA damage-binding protein 1" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] InterPro:IPR004871 Pfam:PF03178
            UniPathway:UPA00143 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
            GO:GO:0005737 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
            GO:GO:0006281 GO:GO:0040011 GO:GO:0016567 GO:GO:0007049
            GO:GO:0040035 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0030163
            GO:GO:0007276 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
            OMA:CALGDGS GeneTree:ENSGT00530000063396 EMBL:Z68507 PIR:A88855
            PIR:T23798 RefSeq:NP_502299.1 HSSP:Q16531 ProteinModelPortal:Q21554
            DIP:DIP-25884N IntAct:Q21554 MINT:MINT-1055778 STRING:Q21554
            PaxDb:Q21554 EnsemblMetazoa:M18.5.1 EnsemblMetazoa:M18.5.2
            GeneID:178156 KEGG:cel:CELE_M18.5 UCSC:M18.5 CTD:178156
            WormBase:M18.5 InParanoid:Q21554 NextBio:899950 Uniprot:Q21554
        Length = 1134

 Score = 156 (60.0 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 34/94 (36%), Positives = 58/94 (61%)

Query:    16 LALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID--IQEADAS 73
             L ++  ++  FGT+D+IQK+H+R++P+GE+  RIAYQ+S+ T+GV + R +   +   AS
Sbjct:   693 LVISDGNSMVFGTVDDIQKIHVRSIPMGESVLRIAYQKSTSTYGVCSNRTESKAERVFAS 752

Query:    74 LNSFVSTGLVTQISPELYSFLFDLQERLAQTIRS 107
              N+ V++    Q  P++ S   D+ E    T  S
Sbjct:   753 KNALVTS----QSRPKVASTRADMDESPPNTTSS 782

 Score = 156 (60.0 bits), Expect = 6.0e-10, P = 6.0e-10
 Identities = 34/108 (31%), Positives = 66/108 (61%)

Query:    81 GLVTQISPELYSFLFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESF 140
             G++ QI  +   FL  +++ +A ++++   IEHS +R+F    +++   GF+DGDL+ES 
Sbjct:  1033 GMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPPSGFVDGDLVESI 1092

Query:   141 LDLNIKDMKSIATGL--QITPPG--STTKRDATVDDIIKIVEDLTRIH 184
             LD++    +S+A  +  +++  G   +  RD    +I+K++EDL R+H
Sbjct:  1093 LDMD----RSVAMDILSKVSDKGWDPSLPRDPV--EILKVIEDLARMH 1134


>POMBASE|SPAC17H9.10c [details] [associations]
            symbol:ddb1 "damaged DNA binding protein Ddb1"
            species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            [GO:0006279 "premeiotic DNA replication" evidence=TAS] [GO:0006282
            "regulation of DNA repair" evidence=IMP] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=IMP]
            [GO:0006974 "response to DNA damage stimulus" evidence=IMP]
            [GO:0007090 "regulation of S phase of mitotic cell cycle"
            evidence=IMP] [GO:0034644 "cellular response to UV" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IGI] [GO:0042787
            "protein ubiquitination involved in ubiquitin-dependent protein
            catabolic process" evidence=IMP] [GO:0051445 "regulation of meiotic
            cell cycle" evidence=IGI] [GO:0070912 "Ddb1-Ckn1 complex"
            evidence=IDA] [GO:0070913 "Ddb1-Wdr21 complex" evidence=IDA]
            [GO:0008180 "signalosome" evidence=IDA] [GO:0031465 "Cul4B-RING
            ubiquitin ligase complex" evidence=IDA] InterPro:IPR004871
            InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143
            PomBase:SPAC17H9.10c GO:GO:0005829 EMBL:CU329670 GO:GO:0005730
            GenomeReviews:CU329670_GR Gene3D:2.130.10.10 GO:GO:0003677
            GO:GO:0007049 InterPro:IPR011047 SUPFAM:SSF50998 GO:GO:0034644
            GO:GO:0040020 GO:GO:0042787 GO:GO:0007090 GO:GO:0006283
            GO:GO:0006282 GO:GO:0006279 GO:GO:0070912 eggNOG:NOG247734
            KO:K10610 OMA:CALGDGS PIR:T37876 RefSeq:NP_593580.1 IntAct:O13807
            STRING:O13807 EnsemblFungi:SPAC17H9.10c.1 GeneID:2542207
            KEGG:spo:SPAC17H9.10c OrthoDB:EOG473T0C NextBio:20803277
            GO:GO:0070913 Uniprot:O13807
        Length = 1072

 Score = 112 (44.5 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
 Identities = 28/91 (30%), Positives = 45/91 (49%)

Query:    94 LFDLQERLAQTIRSVGRIEHSFWRSFNTDVKSDACEGFIDGDLIESFLDLNIKDMKSIAT 153
             L  LQ+ + + I S G + H  W+ +  + ++   +  IDG LIES L L    +  I  
Sbjct:   987 LLQLQDNIRKVIPSFGGLSHKEWKEYRGENETSPSD-LIDGSLIESILGLREPILNEIVN 1045

Query:   154 GLQITPPGSTTKRDATVDDIIKIVEDLTRIH 184
             G         TK D +V D+  I+E+L ++H
Sbjct:  1046 GGH-----EGTKLDISVQDLKSIIENLEKLH 1071

 Score = 60 (26.2 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query:     1 MQQVTAVKKVTLAFHLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRI 49
             M  +++    +L  ++   T+S  +   + EI+ L+++TV +   PRRI
Sbjct:   659 MLNISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLNVQTVSVKGFPRRI 707


>UNIPROTKB|G4N4E2 [details] [associations]
            symbol:MGG_16867 "Uncharacterized protein" species:242507
            "Magnaporthe oryzae 70-15" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
            GO:GO:0005634 Gene3D:2.130.10.10 EMBL:CM001233 GO:GO:0003676
            RefSeq:XP_003712617.1 EnsemblFungi:MGG_16867T0 GeneID:12985117
            KEGG:mgr:MGG_16867 Uniprot:G4N4E2
        Length = 1183

 Score = 108 (43.1 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 24/75 (32%), Positives = 39/75 (52%)

Query:    86 ISPELYSFLFDLQERLAQTIRS-VGRIEHSFWRSF-NTDVKSDACEGFIDGDLIESFLDL 143
             ++P+  S L D Q  +   + S +G ++ + WRSF N + +    E F+DG+ +E FLD+
Sbjct:  1094 VAPKFQSLLMDFQANMEAHVSSPLGELQFNQWRSFRNPEREGAGPERFLDGEFLEMFLDM 1153

Query:   144 NIKDMKSIATGLQIT 158
                    I  GL  T
Sbjct:  1154 EENTQIDICQGLSYT 1168

 Score = 66 (28.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query:    11 TLAFH--LALATDSTFT------FGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGV 60
             T AF   LA+AT+S            ID  ++  + T P+GE  R IAY  + + FG+
Sbjct:   738 TAAFRDCLAVATESAIDRRMELKISRIDRQRQCQMMTRPMGENVRSIAYSSADKVFGL 795

 Score = 49 (22.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query:    36 HIRTVPLGEAPR--RIAYQESSQTFGVITTRIDIQEADASLNSFVSTG 81
             H+ TV +G   R  ++ Y E+++T  V +   D Q  D +L +  + G
Sbjct:   330 HMSTVQIGTTSRATKLVYSETNRTLFVASHYGDSQFYDVNLFADAAKG 377


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       184   0.00078  110 3  11 22  0.41    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  30
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  132 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:03
  No. of threads or processors used:  24
  Search cpu time:  16.86u 0.09s 16.95t   Elapsed:  00:00:19
  Total cpu time:  16.87u 0.09s 16.96t   Elapsed:  00:00:22
  Start:  Thu Aug 15 14:28:21 2013   End:  Thu Aug 15 14:28:43 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with ddb1 ddb1 ddb1 DNA damage-binding protein 1	protein from Xenopus laevis	3.9e-44
BLAST match view associations BLAST with pic pic pic piccolo	protein from Drosophila melanogaster	1.3e-40
BLAST match view associations BLAST with DDB1 DDB1 DDB1 cDNA FLJ52436, highly similar to DNA damage-binding protein 1	protein from Homo sapiens	1.7e-27
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Homo sapiens	1.7e-27
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Gallus gallus	3.1e-27
BLAST match view associations BLAST with ddb1 ddb1 ddb1 damage specific DNA binding protein 1	gene_product from Danio rerio	4.0e-27
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Homo sapiens	4.5e-27
BLAST match view associations BLAST with DDB1B DDB1B DDB1B damaged DNA binding protein 1B	protein from Arabidopsis thaliana	7.9e-27
BLAST match view associations BLAST with Ddb1 Ddb1 Ddb1 damage specific DNA binding protein 1	protein from Mus musculus	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Bos taurus	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 Uncharacterized protein	protein from Canis lupus familiaris	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Homo sapiens	3.7e-26
BLAST match view associations BLAST with LOC100522239 LOC100522239 LOC100522239 Uncharacterized protein	protein from Sus scrofa	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Chlorocebus aethiops	3.7e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Pongo abelii	3.7e-26
BLAST match view associations BLAST with Ddb1 Ddb1 Ddb1 damage-specific DNA binding protein 1, 127kDa	gene from Rattus norvegicus	4.7e-26
BLAST match view associations BLAST with DDB1A DDB1A DDB1A AT4G05420	protein from Arabidopsis thaliana	5.6e-26
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Gallus gallus	7.5e-26
BLAST match view associations BLAST with repE repE repE UV-damaged DNA binding protein1	gene from Dictyostelium discoideum	1.8e-21
BLAST match view associations BLAST with DDB1 DDB1 DDB1 DNA damage-binding protein 1	protein from Homo sapiens	7.7e-16
BLAST match view associations BLAST with DDB1 DDB1 DDB1 Uncharacterized protein	protein from Canis lupus familiaris	1.9e-14
BLAST match view associations BLAST with DDB1 DDB1 DDB1 Uncharacterized protein	protein from Homo sapiens	1.9e-14
BLAST match view associations BLAST with ddb-1 ddb-1 ddb-1	gene from Caenorhabditis elegans	6.0e-10
BLAST match view associations BLAST with ddb-1 ddb-1 ddb-1 DNA damage-binding protein 1	protein from Caenorhabditis elegans	6.0e-10
BLAST match view associations BLAST with MGG_16867 MGG_16867 MGG_16867 Uncharacterized protein	protein from Magnaporthe oryzae 70-15	5.2e-06