RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7983
         (184 letters)



>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 25.1 bits (55), Expect = 1.0
 Identities = 6/24 (25%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 115 FWRSFNTDVKSDACEGFIDGDLIE 138
           + R + T  +  +C+ FI+G+++ 
Sbjct: 10  YQRLYGT--RCFSCDQFIEGEVVS 31


>d1ti8a1 b.19.1.2 (A:13-325) Hemagglutinin {Influenza A virus,
           different strains [TaxId: 11320]}
          Length = 314

 Score = 26.6 bits (59), Expect = 1.7
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 91  YSFLFDLQERLAQTIRSVGRIEH----SFWRSFNTDVKSDAC 128
           Y   F  +E L Q +R  G I+       +    T+  + AC
Sbjct: 86  YPGKFVNEEALRQILRESGGIDKETMGFTYSGIRTNGATSAC 127


>d1mgpa_ c.119.1.1 (A:) Hypothetical protein TM841 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 285

 Score = 26.6 bits (58), Expect = 1.7
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 7/80 (8%)

Query: 17 ALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADASLNS 76
           +  DST        ++K  I ++PL           S          ++  +      S
Sbjct: 5  KILVDSTADV-PFSWMEKYDIDSIPL---YVVWEDGRSEPDEREPEEIMNFYKRIREAGS 60

Query: 77 FVSTGLVTQISPELYSFLFD 96
             T   +Q S E +   + 
Sbjct: 61 VPKT---SQPSVEDFKKRYL 77


>d1pzxa_ c.119.1.1 (A:) Hypothetical protein apc36103 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 287

 Score = 24.9 bits (54), Expect = 6.8
 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 17 ALATDSTFTFGTIDEIQKLHIRTVPL 42
           + TDS         I++  I  +PL
Sbjct: 4  EIITDSGADL-PQSYIREHRIAFLPL 28


>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 320

 Score = 24.7 bits (54), Expect = 8.7
 Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 4/42 (9%)

Query: 91  YSFLFDLQERLAQTIRSVGRIEH----SFWRSFNTDVKSDAC 128
           Y +       L   + S G +E       W     +  S+AC
Sbjct: 90  YPYDVPDYASLRSLVASSGTLEFITEGFTWTGVIQNGGSNAC 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 645,019
Number of extensions: 27863
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 10
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)