BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7987
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 91.7 bits (226), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D +YLK+R+V+ + AFRYGREDLDVLGLTFRK+LFV + Q FPP + K
Sbjct: 38 DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPP--APEDKK 95
Query: 71 PLTRLQKVL 79
PLTRLQ+ L
Sbjct: 96 PLTRLQERL 104
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 91.7 bits (226), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D +YLK+R+V+ + AFRYGREDLDVLGLTFRK+LFV + Q FPP + K
Sbjct: 38 DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPP--APEDKK 95
Query: 71 PLTRLQKVL 79
PLTRLQ+ L
Sbjct: 96 PLTRLQERL 104
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 91.7 bits (226), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/69 (63%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D +YLK+R+V+ + AFRYGREDLDVLGLTFRK+LFV + Q FPP + K
Sbjct: 38 DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPP--APEDKK 95
Query: 71 PLTRLQKVL 79
PLTRLQ+ L
Sbjct: 96 PLTRLQERL 104
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 90.1 bits (222), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/69 (62%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D +YLK+R+V+ + AFRYGREDLDV+GLTFRK+LFV + Q FPP + K
Sbjct: 38 DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVVGLTFRKDLFVANVQSFPP--APEDKK 95
Query: 71 PLTRLQKVL 79
PLTRLQ+ L
Sbjct: 96 PLTRLQERL 104
>pdb|1SUJ|A Chain A, X-Ray Crystal Structure Of Ambystoma Tigrinum Cone
Arrestin
Length = 392
Score = 82.8 bits (203), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 52/69 (75%), Gaps = 4/69 (5%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVLID +YLKDRKVF + AFRYGR+DLD++G++FRK+L+ + Q++PP +
Sbjct: 37 DGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYSLATQVYPP----ETKE 92
Query: 71 PLTRLQKVL 79
PLT LQ+ L
Sbjct: 93 PLTPLQEKL 101
>pdb|3P2D|A Chain A, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
pdb|3P2D|B Chain B, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
Length = 393
Score = 80.1 bits (196), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/50 (72%), Positives = 42/50 (84%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIF 60
DGVVL+D DYLKDRKVF + AFRYGREDLDVLGL+FRK+LF+ + Q F
Sbjct: 39 DGVVLVDPDYLKDRKVFVTLTCAFRYGREDLDVLGLSFRKDLFIANYQAF 88
>pdb|1CF1|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 404
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D + +K ++V+ + AFRYG+ED+DV+GL+FR++L+ + Q+FPP+ ++
Sbjct: 42 DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGAT- 100
Query: 71 PLTRLQKVL 79
TRLQ+ L
Sbjct: 101 --TRLQESL 107
>pdb|1AYR|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 368
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D + +K ++V+ + AFRYG+ED+DV+GL+FR++L+ + Q+FPP+ ++
Sbjct: 42 DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGAT- 100
Query: 71 PLTRLQKVL 79
TRLQ+ L
Sbjct: 101 --TRLQESL 107
>pdb|3UGX|A Chain A, Crystal Structure Of Visual Arrestin
pdb|3UGX|B Chain B, Crystal Structure Of Visual Arrestin
pdb|3UGX|C Chain C, Crystal Structure Of Visual Arrestin
pdb|3UGX|D Chain D, Crystal Structure Of Visual Arrestin
Length = 414
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D + +K ++V+ + AFRYG+ED+DV+GL+FR++L+ + Q+FPP+ ++
Sbjct: 52 DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGAT- 110
Query: 71 PLTRLQKVL 79
TRLQ+ L
Sbjct: 111 --TRLQESL 117
>pdb|3UGU|A Chain A, Crystal Structure Of P44 (Splice Variant Of Visual
Arrestin)
Length = 380
Score = 72.4 bits (176), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D + +K ++V+ + AFRYG+ED+DV+GL+FR++L+ + Q+FPP+ ++
Sbjct: 52 DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGASGAT- 110
Query: 71 PLTRLQKVL 79
TRLQ+ L
Sbjct: 111 --TRLQESL 117
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 16 IDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPL 63
+ D L + G +A F YG D ++G TF K +V +Q P +
Sbjct: 271 VSPDSLVFEEFQGQCIAGFGYGNWDFAIIGDTFLKNNYVVFNQGVPEV 318
>pdb|1YGP|A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site.
pdb|1YGP|B Chain B, Phosphorylated Form Of Yeast Glycogen Phosphorylase With
Phosphate Bound In The Active Site
Length = 879
Score = 28.9 bits (63), Expect = 0.80, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49
DGV +I+ +YL D V Y R+ L+V G+ +R
Sbjct: 587 DGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYR 625
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 28.5 bits (62), Expect = 0.97, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 9 NGDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDV 43
+GDG++ I+ +L D V V RY RE L+V
Sbjct: 760 HGDGIIKIEXHFLPDVYVPCEVCHGKRYNRETLEV 794
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 28.5 bits (62), Expect = 0.98, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 10 GDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDV 43
GDG + I+ ++L D V V RY RE L+V
Sbjct: 779 GDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEV 812
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 1 MTNMFVHVNGDGVVLIDSDYLKDR 24
+T +F H NG G+ LID+ +L DR
Sbjct: 67 ITLLFGHYNGVGIYLIDAPHLYDR 90
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 1 MTNMFVHVNGDGVVLIDSDYLKDR 24
+T +F H NG G+ LID+ +L DR
Sbjct: 67 ITLLFGHYNGVGIYLIDAPHLYDR 90
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 1 MTNMFVHVNGDGVVLIDSDYLKDR 24
+T +F H NG G+ LID+ +L DR
Sbjct: 67 ITLLFGHYNGVGIYLIDAPHLYDR 90
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 9 NGDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDV 43
+GDG++ I+ +L D V V RY RE L+V
Sbjct: 458 HGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 9 NGDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDV 43
+GDG++ I+ +L D V V RY RE L+V
Sbjct: 760 HGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 794
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 20 YLKDRKVFGHVLAAFRYGREDL 41
YLK+RK FG LAAF+ ++ L
Sbjct: 309 YLKERKQFGAPLAAFQLNQQKL 330
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 20 YLKDRKVFGHVLAAFRYGREDL 41
YLK+RK FG LAAF+ ++ L
Sbjct: 309 YLKERKQFGAPLAAFQLNQQKL 330
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 16 IDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPL 63
+ D L + G +A F YG ++G TF K +V +Q P +
Sbjct: 271 VSPDSLVFEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEV 318
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 13 VVLIDSDYLKDRKVFGHVL-AAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNKP 71
VV +D ++ + VL A Y R D+DV G + + + P +S + +
Sbjct: 495 VVTVDVNWTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFEI 554
Query: 72 LTRLQKVLG 80
TR VLG
Sbjct: 555 FTRFAAVLG 563
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.145 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,452,992
Number of Sequences: 62578
Number of extensions: 129970
Number of successful extensions: 462
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 24
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)