Query psy7987
Match_columns 112
No_of_seqs 104 out of 171
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 23:54:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3865|consensus 100.0 3.2E-47 6.9E-52 317.6 6.5 93 1-96 26-119 (402)
2 PF00339 Arrestin_N: Arrestin 95.9 0.043 9.3E-07 37.5 6.6 80 9-96 16-105 (149)
3 COG1140 NarY Nitrate reductase 50.1 16 0.00035 32.8 3.0 29 11-39 206-250 (513)
4 PF10861 DUF2784: Protein of U 46.7 13 0.00028 26.9 1.5 26 69-96 52-77 (112)
5 PRK12676 bifunctional inositol 46.3 12 0.00027 29.2 1.5 47 7-57 85-132 (263)
6 cd01639 IMPase IMPase, inosito 44.1 12 0.00026 28.5 1.1 46 7-56 79-125 (244)
7 cd01515 Arch_FBPase_1 Archaeal 42.3 15 0.00033 28.6 1.4 46 7-56 80-128 (257)
8 PF13426 PAS_9: PAS domain; PD 40.6 7 0.00015 23.8 -0.5 37 10-49 1-37 (104)
9 cd01641 Bacterial_IMPase_like_ 39.3 19 0.00041 27.7 1.6 45 8-56 77-122 (248)
10 PF14385 DUF4416: Domain of un 39.3 36 0.00079 26.2 3.1 16 23-38 122-137 (164)
11 TIGR01331 bisphos_cysQ 3'(2'), 39.2 16 0.00035 28.2 1.2 45 7-55 80-125 (249)
12 cd01517 PAP_phosphatase PAP-ph 37.2 24 0.00051 27.7 1.8 45 7-56 76-128 (274)
13 PF07315 DUF1462: Protein of u 37.1 28 0.00061 25.1 2.0 28 71-100 21-48 (93)
14 PRK10757 inositol monophosphat 36.0 20 0.00044 28.0 1.3 45 8-56 83-128 (267)
15 PF08373 RAP: RAP domain; Int 34.5 19 0.00042 21.7 0.8 16 71-86 18-33 (58)
16 PF12473 DUF3694: Kinesin prot 33.6 42 0.00091 24.3 2.5 45 13-63 94-138 (140)
17 cd06409 PB1_MUG70 The MUG70 pr 30.5 38 0.00083 23.6 1.8 29 70-98 21-52 (86)
18 PLN02911 inositol-phosphate ph 30.1 27 0.00059 28.1 1.2 46 7-56 113-159 (296)
19 TIGR02067 his_9_proposed histi 30.0 27 0.00059 26.9 1.1 46 7-56 78-124 (251)
20 PF11324 DUF3126: Protein of u 29.7 24 0.00053 23.6 0.7 15 84-98 49-63 (63)
21 PF03982 DAGAT: Diacylglycerol 29.4 23 0.0005 29.2 0.6 46 20-84 164-217 (297)
22 PF03067 Chitin_bind_3: Chitin 29.4 17 0.00036 26.9 -0.2 26 84-111 142-167 (183)
23 PRK09593 arb 6-phospho-beta-gl 29.1 23 0.00049 30.9 0.5 22 76-97 78-99 (478)
24 PRK10931 adenosine-3'(2'),5'-b 28.3 27 0.00059 26.9 0.8 45 8-56 82-127 (246)
25 PLN02553 inositol-phosphate ph 28.0 32 0.00068 26.9 1.1 47 7-57 89-136 (270)
26 KOG1577|consensus 27.3 18 0.00038 30.5 -0.4 55 27-85 42-104 (300)
27 cd01643 Bacterial_IMPase_like_ 27.1 33 0.00072 26.5 1.1 46 7-56 75-121 (242)
28 PF13196 DUF4012: Protein of u 26.5 26 0.00057 26.2 0.4 13 11-23 102-114 (144)
29 KOG1069|consensus 26.3 48 0.001 27.1 1.9 27 11-37 139-165 (217)
30 KOG0855|consensus 25.1 20 0.00044 28.9 -0.4 54 31-91 110-171 (211)
31 COG1258 Predicted pseudouridyl 24.8 88 0.0019 27.7 3.4 28 9-39 144-171 (398)
32 TIGR01233 lacG 6-phospho-beta- 24.5 29 0.00064 30.1 0.4 22 76-97 58-79 (467)
33 cd00279 YlxR Ylxr homologs; gr 24.0 83 0.0018 21.2 2.5 20 9-28 23-43 (79)
34 PRK15200 fimbrial protein FimI 23.9 39 0.00085 25.2 1.0 53 46-100 29-84 (177)
35 cd05795 Ribosomal_P0_L10e Ribo 23.3 53 0.0011 24.7 1.6 16 69-84 157-172 (175)
36 PLN02814 beta-glucosidase 22.4 35 0.00077 30.1 0.5 24 74-97 80-103 (504)
37 PF04378 RsmJ: Ribosomal RNA s 22.4 41 0.0009 27.3 0.9 27 11-37 126-165 (245)
38 PTZ00096 40S ribosomal protein 22.2 47 0.001 25.4 1.1 47 33-84 14-61 (143)
39 cd01637 IMPase_like Inositol-m 21.8 52 0.0011 24.7 1.3 46 7-56 78-124 (238)
40 PF12762 DDE_Tnp_IS1595: ISXO2 21.4 64 0.0014 22.6 1.6 16 10-25 1-17 (151)
41 cd01638 CysQ CysQ, a 3'-Phosph 21.3 42 0.0009 25.7 0.7 45 8-56 79-124 (242)
42 PRK13511 6-phospho-beta-galact 21.3 39 0.00084 29.3 0.5 22 76-97 59-80 (469)
43 PF04296 DUF448: Protein of un 21.1 84 0.0018 20.8 2.0 22 9-30 22-44 (78)
44 PF13247 Fer4_11: 4Fe-4S diclu 20.8 57 0.0012 22.7 1.2 17 7-23 27-44 (98)
No 1
>KOG3865|consensus
Probab=100.00 E-value=3.2e-47 Score=317.60 Aligned_cols=93 Identities=49% Similarity=0.797 Sum_probs=88.2
Q ss_pred CccccceeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHH
Q psy7987 1 MTNMFVHVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVL 79 (112)
Q Consensus 1 ~~dhvd~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerL 79 (112)
.|||+|+||| ||||+|||||+|+|||||||+|||||||||+|||||+||||||+++.|+|||.+. ..+||+|||||
T Consensus 26 FvDhvd~vdPvDGvVlvDpeYlK~RKvfv~L~caFRYGREDldVlGLtFrKdL~~~~~Qv~Pp~~~---~~plT~lQErL 102 (402)
T KOG3865|consen 26 FVDHVDQVDPVDGVVLVDPEYLKDRKVFVQLTCAFRYGREDLDVLGLTFRKDLYLATVQVYPPPED---SRPLTRLQERL 102 (402)
T ss_pred cccccccccccceeEEEChHHhccceEEEEEEeeeecccccceeeeeEEEeeeEEEEEEeeCCCcC---CCcccHHHHHH
Confidence 4899999999 9999999999999999999999999999999999999999999999999999443 46799999999
Q ss_pred hhccCCCCccceeeeec
Q psy7987 80 GLIPGSCTVGADISLID 96 (112)
Q Consensus 80 lkKLG~na~pf~~~~~~ 96 (112)
+||||+|||||++.++.
T Consensus 103 lkKLG~nAyPF~f~~pp 119 (402)
T KOG3865|consen 103 LKKLGSNAYPFTFEFPP 119 (402)
T ss_pred HHHhCCCCCceEEeCCC
Confidence 99999999999999875
No 2
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=95.91 E-value=0.043 Score=37.55 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=56.5
Q ss_pred CC-CceEEECccc-cccceeEEEEeeeeeecccccccccccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHHhhc----
Q psy7987 9 NG-DGVVLIDSDY-LKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVLGLI---- 82 (112)
Q Consensus 9 DP-DGVVlVDpey-lk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerLlkK---- 82 (112)
|. .|.|++.... ++-+.|.+++.+..++.-.+....+.++++ |..+..... ....+...+..|...
T Consensus 16 e~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 87 (149)
T PF00339_consen 16 EVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRK-------QTTPKVQYS-EKKEYFDHESQLWGSEDGP 87 (149)
T ss_dssp --EEEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEE-------EEESTSSS--SSSSSSHHHHHHHHH----
T ss_pred CEEEEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeee-------EEecccccc-cceeeccceeEeeeeccce
Confidence 45 6988887655 567999999999999988888878877776 333433321 135788888888888
Q ss_pred ----cCCCCccceeeeec
Q psy7987 83 ----PGSCTVGADISLID 96 (112)
Q Consensus 83 ----LG~na~pf~~~~~~ 96 (112)
.|...|||++.|++
T Consensus 88 ~~l~~G~~~fpF~f~LP~ 105 (149)
T PF00339_consen 88 NILPPGEYEFPFEFQLPS 105 (149)
T ss_dssp ----C-TTEEEEEE---T
T ss_pred ecccCCCEEEEEEEECCC
Confidence 89999999999983
No 3
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=50.15 E-value=16 Score=32.76 Aligned_cols=29 Identities=41% Similarity=0.610 Sum_probs=22.6
Q ss_pred CceEEECcccccc----------ceeEEEE------eeeeeeccc
Q psy7987 11 DGVVLIDSDYLKD----------RKVFGHV------LAAFRYGRE 39 (112)
Q Consensus 11 DGVVlVDpeylk~----------rKVFvqL------tcaFRYGRE 39 (112)
||+||||.+.-+| ||||-.- -|+|-|.|=
T Consensus 206 DGIVLiDQd~CRGwR~CvsgCPYKKvYfNwksgKsEKCifCyPRi 250 (513)
T COG1140 206 DGIVLIDQDKCRGWRMCVSGCPYKKVYFNWKSGKSEKCIFCYPRI 250 (513)
T ss_pred CceEEeecccccchhhhhcCCCcceeEeeccCCCcceeEEecccc
Confidence 9999999998775 6777654 688888553
No 4
>PF10861 DUF2784: Protein of Unknown function (DUF2784); InterPro: IPR021218 This is a family of uncharacterised protein. The function is not known however it is conserved in Bacteria.
Probab=46.70 E-value=13 Score=26.95 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHhhccCCCCccceeeeec
Q psy7987 69 NKPLTRLQKVLGLIPGSCTVGADISLID 96 (112)
Q Consensus 69 ~~~lT~lQerLlkKLG~na~pf~~~~~~ 96 (112)
..|||.+|..|-++.|..+|| -|||+
T Consensus 52 ~CPLT~lE~~lR~~aG~~~y~--~gFI~ 77 (112)
T PF10861_consen 52 YCPLTDLENWLRRRAGEAGYP--GGFIQ 77 (112)
T ss_pred CCCCcHHHHHHHHHcCCCCCC--CCHHH
Confidence 478999999999999999995 35654
No 5
>PRK12676 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Reviewed
Probab=46.31 E-value=12 Score=29.16 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=35.5
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhee
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSD 57 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t~ 57 (112)
.||| ||-- .|++|.-.|+..++.++-|+-..=|+-..+..++|.+..
T Consensus 85 vIDPiDGT~----nfv~g~p~~~vsial~~~g~p~~gvV~~P~~~e~~~A~~ 132 (263)
T PRK12676 85 VLDPLDGTY----NAINGIPFYAISIAVFKGGKPVYGYVYNLATGDFYEAIP 132 (263)
T ss_pred EEeccCCch----HHhcCCCceEEEEEEEECCeEEEEEEEecCCCCEEEEEC
Confidence 4677 7744 789999999988888877765666666788888887654
No 6
>cd01639 IMPase IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.
Probab=44.07 E-value=12 Score=28.51 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=34.3
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
.||| ||-- .+++|.-.|+..++.++-|+--.=|+-..+.+++|.+.
T Consensus 79 vIDPIDGT~----nf~~g~p~~~vsial~~~g~p~~gvV~~P~~~~~~~a~ 125 (244)
T cd01639 79 IIDPLDGTT----NFVHGFPHFAVSIALAVKGEPVVGVVYDPIRNELFTAV 125 (244)
T ss_pred EEecccChh----HHhcCCCcEEEEEEEEECCEEEEEEEEeCCCCcEEEEE
Confidence 3677 7754 78999999998888888776566666677777777654
No 7
>cd01515 Arch_FBPase_1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (FBPase class IV). These are Mg++ dependent phosphatases. Members in this family may have both fructose-1,6-bisphosphatase and inositol-monophosphatase activity. In hyperthermophilic archaea, inositol monophosphatase is thought to play a role in the biosynthesis of di-myo-inositol-1,1'-phosphate, an osmolyte unique to hyperthermophiles.
Probab=42.33 E-value=15 Score=28.59 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=35.0
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecc--cccccccccchhhhhhhe
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGR--EDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGR--ED~dVmGL~FrKdl~l~t 56 (112)
.||| ||-- .+++|.-.|+..++..+-|+ -..=|+-..+..++|.+.
T Consensus 80 vIDPIDGT~----nfv~g~p~~~isial~~~g~~~p~~gvv~~P~~~~~~~a~ 128 (257)
T cd01515 80 VLDPLDGTY----NAINGIPFYSVSVAVFKIDKSDPYYGYVYNLATGDLYYAI 128 (257)
T ss_pred EEeCcCChh----HHhcCCCceEEEEEEEeCCCCCeEEEEEEecCCCCeEEEE
Confidence 3677 7743 78899999999999999888 555566667778877654
No 8
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=40.62 E-value=7 Score=23.78 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 10 GDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 10 PDGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
|+|++++|++ |+=+|+.-...==+|....|++|-++.
T Consensus 1 p~~i~i~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~ 37 (104)
T PF13426_consen 1 PDGIFILDPD---GRILYVNPAFERLFGYSREELIGKSIS 37 (104)
T ss_dssp -SEEEEEETT---SBEEEE-HHHHHHHTS-HHHHTTSBGG
T ss_pred CEEEEEECCc---CcEEehhHHHHHHHCcCHHHHcCCCcc
Confidence 5899999984 666666432222267788899999875
No 9
>cd01641 Bacterial_IMPase_like_1 Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.
Probab=39.32 E-value=19 Score=27.72 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=34.4
Q ss_pred eCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 8 VNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 8 VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
||| ||-- .+++|.--|...++.++-|+-..=|+-..+.+++|.+.
T Consensus 77 iDPIDGT~----nf~~g~p~~~vsial~~~g~p~~gvV~~P~~~~~~~A~ 122 (248)
T cd01641 77 LDPIDGTK----SFIRGLPVWGTLIALLHDGRPVLGVIDQPALGERWIGA 122 (248)
T ss_pred EecCcCch----hHhcCCCceEEEEEEEECCEEEEEEEccCccCCEEEEe
Confidence 788 8854 88999889987777777676666677777888888754
No 10
>PF14385 DUF4416: Domain of unknown function (DUF4416)
Probab=39.26 E-value=36 Score=26.21 Aligned_cols=16 Identities=6% Similarity=0.360 Sum_probs=12.9
Q ss_pred cceeEEEEeeeeeecc
Q psy7987 23 DRKVFGHVLAAFRYGR 38 (112)
Q Consensus 23 ~rKVFvqLtcaFRYGR 38 (112)
|+-||+.+|..|+.|+
T Consensus 122 ~~GIyaE~tL~y~~g~ 137 (164)
T PF14385_consen 122 GDGIYAELTLIYQKGS 137 (164)
T ss_pred cCCEEEEEEEEEECCe
Confidence 4458999999999875
No 11
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase, bacterial. Sulfate is incorporated into 3-phosphoadenylylsulfate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulfate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. This model describes a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle.
Probab=39.25 E-value=16 Score=28.22 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=35.2
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhh
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVT 55 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~ 55 (112)
.||| ||-- .|++|.-.|...++.++-|+--.=|+-..+..++|.+
T Consensus 80 vIDPIDGT~----nF~~G~p~~~vsIal~~~g~pv~gvI~~P~~~~~~~A 125 (249)
T TIGR01331 80 LVDPLDGTK----EFINRNGDFTVNIALVEHGVPVLGVVYAPATGVTYFA 125 (249)
T ss_pred EEcCCcChH----HHhcCCCcEEEEEEEEECCEEEEEEEEecCCCCEEEE
Confidence 3777 7754 7889999999888888877766667777778887765
No 12
>cd01517 PAP_phosphatase PAP-phosphatase_like domains. PAP-phosphatase is a member of the inositol monophosphatase family, and catalyses the hydrolysis of 3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In Saccharomyces cerevisiae, HAL2 (MET22) is involved in methionine biosynthesis and provides increased salt tolerance when over-expressed. Bacterial members of this domain family may differ in their substrate specificity and dephosphorylate different targets, as the substrate binding site does not appear to be conserved in that sub-set.
Probab=37.20 E-value=24 Score=27.69 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=31.8
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccc-------hhhhhhhe
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTF-------RKELFVTS 56 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~F-------rKdl~l~t 56 (112)
.||| ||-. .|++|. -|+..++..+=|+--.=|+-..+ +.++|.+.
T Consensus 76 iIDPIDGT~----nfv~g~-~~~vsIal~~~g~pv~GvI~~P~~~~~~~~~~~~~~A~ 128 (274)
T cd01517 76 VLDPIDGTK----GFLRGD-QFAVALALIEDGEVVLGVIGCPNLPLDDGGGGDLFSAV 128 (274)
T ss_pred EEcCCcCch----hhhcCC-ceEEEEEEEECCEEEEEEEeCCCccccCCCCCcEEEEE
Confidence 4789 9965 899999 99877777765554444555566 77777654
No 13
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=37.15 E-value=28 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=21.2
Q ss_pred CCCHHHHHHhhccCCCCccceeeeecCCCC
Q psy7987 71 PLTRLQKVLGLIPGSCTVGADISLIDIDRG 100 (112)
Q Consensus 71 ~lT~lQerLlkKLG~na~pf~~~~~~~~~~ 100 (112)
..-=||-.|-||-.+. ||+++-|||..-
T Consensus 21 TyeWL~aal~RKyp~~--~f~~~YiDi~~p 48 (93)
T PF07315_consen 21 TYEWLEAALKRKYPDQ--PFEFTYIDIENP 48 (93)
T ss_dssp HHHHHHHHHHHH-TTS---EEEEEEETTT-
T ss_pred HHHHHHHHHhCcCCCC--ceEEEEEecCCC
Confidence 4556899999999887 899999999753
No 14
>PRK10757 inositol monophosphatase; Provisional
Probab=36.02 E-value=20 Score=28.02 Aligned_cols=45 Identities=27% Similarity=0.459 Sum_probs=32.7
Q ss_pred eCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 8 VNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 8 VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
||| ||-. .|++|.-.|...++.++-|+--.=|+-..+.+++|.+.
T Consensus 83 IDPIDGT~----nf~~g~p~~~vsial~~~g~pv~GvV~~P~~~~~~~A~ 128 (267)
T PRK10757 83 IDPLDGTT----NFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTAT 128 (267)
T ss_pred EeCccCch----HHHhCCCcEEEEEEEEECCEEEEEEEEcCCCCCEEEEE
Confidence 788 8865 78899999987777766665555566667777777654
No 15
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=34.48 E-value=19 Score=21.67 Aligned_cols=16 Identities=19% Similarity=-0.081 Sum_probs=13.5
Q ss_pred CCCHHHHHHhhccCCC
Q psy7987 71 PLTRLQKVLGLIPGSC 86 (112)
Q Consensus 71 ~lT~lQerLlkKLG~n 86 (112)
.-|.++.|+|+++|=+
T Consensus 18 g~t~lk~r~L~~~G~~ 33 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYK 33 (58)
T ss_pred hHHHHHHHHHHHCCCE
Confidence 3599999999999943
No 16
>PF12473 DUF3694: Kinesin protein ; InterPro: IPR022164 This domain family is found in eukaryotes, and is typically between 131 and 151 amino acids in length. The family is found in association with PF00225 from PFAM, PF00498 from PFAM. There is a single completely conserved residue W that may be functionally important.
Probab=33.59 E-value=42 Score=24.31 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=32.4
Q ss_pred eEEECccccccceeEEEEeeeeeecccccccccccchhhhhhheeeeeCCC
Q psy7987 13 VVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPL 63 (112)
Q Consensus 13 VVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t~QvyPp~ 63 (112)
-.++|.+--+|.|||.++...-+--+-.+ =+.|+||+.+ +|||..
T Consensus 94 s~~LNr~T~~~~rV~~tv~~~v~~~~~~e---Pv~f~~di~v---~I~~r~ 138 (140)
T PF12473_consen 94 SLLLNRVTPKGERVYMTVAVDVVISHCQE---PVRFRKDICV---RIYPRD 138 (140)
T ss_pred HHHcCCCCCCCCEEEEEEEEEEEeCCCCC---ceEEEEEEEE---EEeCCC
Confidence 34566666679999999988887655333 4689999765 688753
No 17
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=30.49 E-value=38 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.3
Q ss_pred CCCCHHHHHHhhccCCCCc---cceeeeecCC
Q psy7987 70 KPLTRLQKVLGLIPGSCTV---GADISLIDID 98 (112)
Q Consensus 70 ~~lT~lQerLlkKLG~na~---pf~~~~~~~~ 98 (112)
..++.|++...+|||.... .|.|+-.|=+
T Consensus 21 ~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDE 52 (86)
T cd06409 21 ESLEELRTLISQRLGDDDFETHLYALSYVDDE 52 (86)
T ss_pred CCHHHHHHHHHHHhCCccccCCcccEEEEcCC
Confidence 5689999999999999985 8999998844
No 18
>PLN02911 inositol-phosphate phosphatase
Probab=30.14 E-value=27 Score=28.09 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=32.5
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
.||| ||-. .|++|.-.|...++.++=|+--.=|+-..+.+++|.+.
T Consensus 113 iIDPIDGT~----NFv~G~p~favsIal~~~g~pv~GvV~~P~~~e~y~A~ 159 (296)
T PLN02911 113 VLDPIDGTK----SFITGKPLFGTLIALLYKGKPVLGIIDQPVLKERWVGV 159 (296)
T ss_pred EEeCCcChH----HHhcCCCceEEEEEEEECCEEEEEEEecCCCCCEEEEE
Confidence 3688 8854 78899999987777666555455566667777777644
No 19
>TIGR02067 his_9_proposed histidinol-phosphate phosphatase HisN, inositol monophosphatase family. This subfamily belongs to the inositol monophosphatase family (pfam00459). The members of this family consist of no more than one per species and are found only in species in which histidine is synthesized de novo but no histidinol phosphatase can be found in either of the two described families (TIGR01261, TIGR01856). In at least one species, the member of this family is found near known histidine biosynthesis genes.
Probab=29.99 E-value=27 Score=26.94 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=30.9
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
.||| ||-. .+++|.-.|+..++.++=|+-..=|+-..+..++|.+.
T Consensus 78 iiDPIDGT~----nF~~g~p~~~vsial~~~g~p~~gvv~~P~~~~~~~A~ 124 (251)
T TIGR02067 78 VLDPIDGTK----SFIRGVPVWGTLIALVEGGMPVLGVIFQPATGERWWAA 124 (251)
T ss_pred EEecCcChh----HHhcCCCceEEEEEEEECCEEEEEEEEEcCCCCEEEEe
Confidence 3677 7754 78888888887666666555455555666677777544
No 20
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=29.72 E-value=24 Score=23.61 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.3
Q ss_pred CCCCccceeeeecCC
Q psy7987 84 GSCTVGADISLIDID 98 (112)
Q Consensus 84 G~na~pf~~~~~~~~ 98 (112)
|.-+|-|.|++.|+|
T Consensus 49 Ge~Sy~f~M~ILd~D 63 (63)
T PF11324_consen 49 GEVSYNFQMAILDED 63 (63)
T ss_pred CcEEEEEEEEEecCC
Confidence 567889999998886
No 21
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=29.43 E-value=23 Score=29.18 Aligned_cols=46 Identities=37% Similarity=0.590 Sum_probs=28.3
Q ss_pred ccccceeEEEEe--------eeeeecccccccccccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHHhhccC
Q psy7987 20 YLKDRKVFGHVL--------AAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVLGLIPG 84 (112)
Q Consensus 20 ylk~rKVFvqLt--------caFRYGRED~dVmGL~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerLlkKLG 84 (112)
++|+||-|+.++ =.|-+|..|. | .|+-.+. ...+..+|+.+.|++|
T Consensus 164 ~lk~RkGFvklAl~~Ga~LVPv~~FGE~d~-----------~---~~~~~~~-----~~~~r~~q~~~~~~~g 217 (297)
T PF03982_consen 164 YLKNRKGFVKLALQHGAPLVPVYSFGENDL-----------Y---DQVQNPP-----GSWLRRFQRWLKKKFG 217 (297)
T ss_pred EECCcchHHHhHHHcCCcEEeEEEeCChhh-----------e---eeccCCc-----hhHHHHHHHHHHHHcC
Confidence 467899998773 3455666552 1 2331111 1346789999999987
No 22
>PF03067 Chitin_bind_3: Chitin binding domain; InterPro: IPR004302 Entomopoxviruses are a class of insect viruses whose virions are embedded in cytoplasmic occlusion bodies. The major component of these protective complexes is a protein called spheroidin/spindolin. Intermolecular disulphide bonds have been shown to play major roles in the formation and structure of these viral occlusion bodies [] some of which are spindle body proteins.; GO: 0019028 viral capsid; PDB: 3UAM_E 2XWX_A 2LHS_A 2BEM_B 2BEN_B 4A02_A.
Probab=29.39 E-value=17 Score=26.91 Aligned_cols=26 Identities=27% Similarity=0.652 Sum_probs=16.1
Q ss_pred CCCCccceeeeecCCCCcchhhhhhccc
Q psy7987 84 GSCTVGADISLIDIDRGDCLDTLFWWWN 111 (112)
Q Consensus 84 G~na~pf~~~~~~~~~~~~~~~~~~~~~ 111 (112)
++-.|-++++||+-..|.|. |+|||.
T Consensus 142 ~~~~~~~~v~lP~~~~g~~V--l~~~W~ 167 (183)
T PF03067_consen 142 DQTNYTMSVTLPDGRCGHCV--LQWRWQ 167 (183)
T ss_dssp SEEEE--EEEE-TT--EEEE--EEEEEE
T ss_pred CCceEEEEEECCCCCcCCEE--EEEEEE
Confidence 34456669999999888885 788884
No 23
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=29.10 E-value=23 Score=30.90 Aligned_cols=22 Identities=23% Similarity=0.004 Sum_probs=18.6
Q ss_pred HHHHhhccCCCCccceeeeecC
Q psy7987 76 QKVLGLIPGSCTVGADISLIDI 97 (112)
Q Consensus 76 QerLlkKLG~na~pf~~~~~~~ 97 (112)
.-+|||.||=|||=|+||-.=|
T Consensus 78 Di~Lm~~lG~~aYRfSIsWsRI 99 (478)
T PRK09593 78 DIALFAEMGFKTYRMSIAWTRI 99 (478)
T ss_pred HHHHHHHcCCCEEEEecchhhc
Confidence 4589999999999999995544
No 24
>PRK10931 adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional
Probab=28.29 E-value=27 Score=26.93 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=32.1
Q ss_pred eCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 8 VNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 8 VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
||| ||-. .+++|.--|...++.++=|+-..=|+-..++.++|.+.
T Consensus 82 IDPIDGT~----nF~~g~p~~~vsIal~~~g~p~~GvV~~P~~~~~y~A~ 127 (246)
T PRK10931 82 VDPLDGTK----EFIKRNGEFTVNIALIEQGKPVLGVVYAPVMNVMYSAA 127 (246)
T ss_pred EecCcChH----HHHcCCCCEEEEEEEEECCEEEEEEEeecCCCCEEEEE
Confidence 777 7754 78888888988777777666555566666777777654
No 25
>PLN02553 inositol-phosphate phosphatase
Probab=27.97 E-value=32 Score=26.87 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=33.1
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhee
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSD 57 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t~ 57 (112)
.||| ||-. .+++|.-.|...++.++-|+--.=|+-..+.+++|.+..
T Consensus 89 iIDPIDGT~----NF~~g~p~~avsIal~~~g~pv~GvV~~P~~~e~~~A~~ 136 (270)
T PLN02553 89 IVDPLDGTT----NFVHGFPFVCVSIGLTIGKVPVVGVVYNPILDELFTAVK 136 (270)
T ss_pred EEecccchh----hHhhcCCceEEEEEEEECCEEEEEEEecCCCCCeEEEEc
Confidence 4677 7754 788898889877777776655555666667777776543
No 26
>KOG1577|consensus
Probab=27.26 E-value=18 Score=30.53 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=34.4
Q ss_pred EEEEeeeeeeccccccccccc--------chhhhhhheeeeeCCCCCCCCCCCCCHHHHHHhhccCC
Q psy7987 27 FGHVLAAFRYGREDLDVLGLT--------FRKELFVTSDQIFPPLNSTTPNKPLTRLQKVLGLIPGS 85 (112)
Q Consensus 27 FvqLtcaFRYGRED~dVmGL~--------FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerLlkKLG~ 85 (112)
|=++=||..||.|++---+|+ =|.|||+.|+ +||.... +...-+-=++-||+||-
T Consensus 42 YRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSK-lw~~~~~---~~~v~~al~~sLk~L~l 104 (300)
T KOG1577|consen 42 YRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSK-LWPTDHA---PELVEKALEKSLKKLQL 104 (300)
T ss_pred cceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeec-cCccccC---hhhHHHHHHHHHHHhCh
Confidence 778899999999986433332 3677888665 8775322 12222334566778873
No 27
>cd01643 Bacterial_IMPase_like_2 Bacterial family of Mg++ dependent phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate inositol monophosphate or similar substrates.
Probab=27.06 E-value=33 Score=26.50 Aligned_cols=46 Identities=17% Similarity=0.340 Sum_probs=31.7
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
.||| ||-. .|++|.-.|+..++.++=|+--.=|+-..+.+++|.+.
T Consensus 75 iIDPIDGT~----nF~~g~p~~~vsial~~~g~pv~GvV~~P~~~~~~~A~ 121 (242)
T cd01643 75 VIDPIDGTT----NFARGIPIWAISIALLYRGEPVFGVIALPALNQTFVAF 121 (242)
T ss_pred EEeCccChH----HHhcCCCceEEEEEEEECCEEEEEEEecCCCCCEEEEE
Confidence 3777 7754 78899999988777776555444455566677777644
No 28
>PF13196 DUF4012: Protein of unknown function (DUF4012)
Probab=26.53 E-value=26 Score=26.25 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=11.8
Q ss_pred CceEEECcccccc
Q psy7987 11 DGVVLIDSDYLKD 23 (112)
Q Consensus 11 DGVVlVDpeylk~ 23 (112)
||||.|||..|+.
T Consensus 102 DGViavDPv~L~~ 114 (144)
T PF13196_consen 102 DGVIAVDPVALSY 114 (144)
T ss_pred cEEEEECHHHHHH
Confidence 9999999999874
No 29
>KOG1069|consensus
Probab=26.33 E-value=48 Score=27.08 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=22.3
Q ss_pred CceEEECccccccceeEEEEeeeeeec
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYG 37 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYG 37 (112)
||++++||...++++--..-+.+|-||
T Consensus 139 d~~lv~Dpt~~qek~~~~~~~lsf~~~ 165 (217)
T KOG1069|consen 139 DGVLVLDPTAKQEKISTARATLSFEGG 165 (217)
T ss_pred CccEEECCcHHhhhhhhceEEEEEecC
Confidence 899999999999985444557788887
No 30
>KOG0855|consensus
Probab=25.12 E-value=20 Score=28.92 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=34.3
Q ss_pred eeeee--e---cccccccccccchhhh---hhheeeeeCCCCCCCCCCCCCHHHHHHhhccCCCCccce
Q psy7987 31 LAAFR--Y---GREDLDVLGLTFRKEL---FVTSDQIFPPLNSTTPNKPLTRLQKVLGLIPGSCTVGAD 91 (112)
Q Consensus 31 tcaFR--Y---GRED~dVmGL~FrKdl---~l~t~QvyPp~~~~~~~~~lT~lQerLlkKLG~na~pf~ 91 (112)
.|.|| | -.-+-||+||+|-.-. -.++.|=+| ..-||.--..++|+||-.--||.
T Consensus 110 aCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlP-------YhLLSDpk~e~ik~lGa~k~p~g 171 (211)
T KOG0855|consen 110 ACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLP-------YHLLSDPKNEVIKDLGAPKDPFG 171 (211)
T ss_pred cccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCC-------eeeecCcchhHHHHhCCCCCCCC
Confidence 79999 3 3347799999996421 123344433 23345556788999998776664
No 31
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=24.83 E-value=88 Score=27.67 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=24.2
Q ss_pred CCCceEEECccccccceeEEEEeeeeeeccc
Q psy7987 9 NGDGVVLIDSDYLKDRKVFGHVLAAFRYGRE 39 (112)
Q Consensus 9 DPDGVVlVDpeylk~rKVFvqLtcaFRYGRE 39 (112)
+||=+|+||++ +.||++|+.-.|=|||=
T Consensus 144 ~Pdi~i~vd~~---~~~v~vqvnpi~i~GrY 171 (398)
T COG1258 144 NPDIVIVVDLE---TLKVEVQVNPIYIYGRY 171 (398)
T ss_pred CCCEEEEEecC---CcEEEEEEcceEEEEEe
Confidence 56999999984 57899999999999874
No 32
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=24.51 E-value=29 Score=30.06 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=18.9
Q ss_pred HHHHhhccCCCCccceeeeecC
Q psy7987 76 QKVLGLIPGSCTVGADISLIDI 97 (112)
Q Consensus 76 QerLlkKLG~na~pf~~~~~~~ 97 (112)
.-+|+|+||-|||=|+||-.=|
T Consensus 58 Di~L~~~lG~~~yRfSIsWsRI 79 (467)
T TIGR01233 58 DLELAEEYGVNGIRISIAWSRI 79 (467)
T ss_pred HHHHHHHcCCCEEEEecchhhc
Confidence 4589999999999999996554
No 33
>cd00279 YlxR Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation
Probab=24.01 E-value=83 Score=21.21 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=16.1
Q ss_pred CCCceEEECccc-cccceeEE
Q psy7987 9 NGDGVVLIDSDY-LKDRKVFG 28 (112)
Q Consensus 9 DPDGVVlVDpey-lk~rKVFv 28 (112)
+|||.|.+|+.. +.||-.|+
T Consensus 23 ~~~g~i~~D~~~k~~GRGaYv 43 (79)
T cd00279 23 GPEGEVVPDPTGKLPGRGAYV 43 (79)
T ss_pred cCCCeEEECCCCCCCCCeEEE
Confidence 458999999755 57999998
No 34
>PRK15200 fimbrial protein FimI; Provisional
Probab=23.87 E-value=39 Score=25.21 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=31.5
Q ss_pred ccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHHhhccCCC---CccceeeeecCCCC
Q psy7987 46 LTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVLGLIPGSC---TVGADISLIDIDRG 100 (112)
Q Consensus 46 L~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerLlkKLG~n---a~pf~~~~~~~~~~ 100 (112)
++|.=.+.-++..|=|..... .-.|-.+-.+-++..|+- ..||+|.|.|-+.+
T Consensus 29 I~f~G~Iv~~~C~V~~~s~~~--~V~Lg~v~~~~~~~~G~~s~~~~~F~I~L~~C~~~ 84 (177)
T PRK15200 29 VHLRGQLVNGGCAVATESQDL--RVLMGQYRTNAFTGPGSFAPVSVPFSLRLISCSAE 84 (177)
T ss_pred EEEEEEEEcccceEcCCCCce--EEECCccCHHHhccCCCccCCcEeeEEEecCCCCc
Confidence 445555555555553321111 124555666777888875 37999999997754
No 35
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=23.31 E-value=53 Score=24.72 Aligned_cols=16 Identities=6% Similarity=-0.145 Sum_probs=14.0
Q ss_pred CCCCCHHHHHHhhccC
Q psy7987 69 NKPLTRLQKVLGLIPG 84 (112)
Q Consensus 69 ~~~lT~lQerLlkKLG 84 (112)
-+.+|+-|.+||++||
T Consensus 157 G~~v~~~~A~lL~~l~ 172 (175)
T cd05795 157 GEKVGASEATLLNKLN 172 (175)
T ss_pred CCCcCHHHHHHHHHcC
Confidence 4678999999999998
No 36
>PLN02814 beta-glucosidase
Probab=22.42 E-value=35 Score=30.06 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=19.9
Q ss_pred HHHHHHhhccCCCCccceeeeecC
Q psy7987 74 RLQKVLGLIPGSCTVGADISLIDI 97 (112)
Q Consensus 74 ~lQerLlkKLG~na~pf~~~~~~~ 97 (112)
+-.-+|+|+||=|||=|+||-.-|
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI 103 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRL 103 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhc
Confidence 335689999999999999996554
No 37
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=22.36 E-value=41 Score=27.30 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=13.5
Q ss_pred CceEEECccccc-------------cceeEEEEeeeeeec
Q psy7987 11 DGVVLIDSDYLK-------------DRKVFGHVLAAFRYG 37 (112)
Q Consensus 11 DGVVlVDpeylk-------------~rKVFvqLtcaFRYG 37 (112)
-|+|+|||.|=. ..|=|.+=+++--|.
T Consensus 126 RglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYP 165 (245)
T PF04378_consen 126 RGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYP 165 (245)
T ss_dssp -EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 799999998743 234455557777774
No 38
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=22.19 E-value=47 Score=25.43 Aligned_cols=47 Identities=21% Similarity=0.204 Sum_probs=29.8
Q ss_pred eeee-cccccccccccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHHhhccC
Q psy7987 33 AFRY-GREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVLGLIPG 84 (112)
Q Consensus 33 aFRY-GRED~dVmGL~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerLlkKLG 84 (112)
.|.| |-+=++++-++... ..+++|....-.-.+-|++-|+.|++|+-
T Consensus 14 ~f~yRG~~l~~L~~m~~~e-----~~~L~~aR~RR~~~RGl~~~~~~LlkKir 61 (143)
T PTZ00096 14 KFTYRGVELEKLLALPEEE-----LVELFRARQRRRINRGIKRKHPTLLKKLR 61 (143)
T ss_pred eeeeecCCHHHHHcCCHHH-----HHHHcCcccccccccCCCHHHHHHHHHHH
Confidence 4556 44444466776643 25677765532224568999999999983
No 39
>cd01637 IMPase_like Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.
Probab=21.75 E-value=52 Score=24.74 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=29.4
Q ss_pred eeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 7 HVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
.||| ||-- .+++|...|+..++.++=|+--.=|+-..+..++|.+.
T Consensus 78 viDPIDGT~----nf~~g~p~~~vsial~~~g~pv~gvv~~P~~~~~~~a~ 124 (238)
T cd01637 78 VIDPIDGTT----NFVAGLPNFAVSIALYEDGKPVLGVIYDPMLDELYYAG 124 (238)
T ss_pred EEcceeChh----hhhcCCCCEEEEEEEEECCEEEEEEEecCCCCcEEEEE
Confidence 4677 7754 68888888888777776554433344455566666544
No 40
>PF12762 DDE_Tnp_IS1595: ISXO2-like transposase domain; InterPro: IPR024445 This domain probably functions as an integrase that is found in a wide variety of transposases, including ISXO2.
Probab=21.36 E-value=64 Score=22.64 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=13.9
Q ss_pred C-CceEEECccccccce
Q psy7987 10 G-DGVVLIDSDYLKDRK 25 (112)
Q Consensus 10 P-DGVVlVDpeylk~rK 25 (112)
| +|+|=||..|+.+++
T Consensus 1 ~L~G~VEiDEty~~~~~ 17 (151)
T PF12762_consen 1 PLSGIVEIDETYFGGRK 17 (151)
T ss_pred CCCCEEEeCcCEECCcc
Confidence 5 799999999998766
No 41
>cd01638 CysQ CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).
Probab=21.35 E-value=42 Score=25.69 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=30.6
Q ss_pred eCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhhe
Q psy7987 8 VNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTS 56 (112)
Q Consensus 8 VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t 56 (112)
||| ||-. .|++|.--|...++.++=|+--.=|+-..+..++|.+.
T Consensus 79 iDPIDGT~----Nfv~g~p~~~isial~~~g~pv~gvi~~P~~~~~~~A~ 124 (242)
T cd01638 79 VDPLDGTR----EFIKGNGEFAVNIALVEDGRPVLGVVYAPALGELYYAL 124 (242)
T ss_pred EecccChH----HHhcCCCCeEEEEEEEECCEEEEEEEecCCCCCEEEEE
Confidence 778 8854 78899888887777666554444455566677777654
No 42
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=21.28 E-value=39 Score=29.26 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=18.9
Q ss_pred HHHHhhccCCCCccceeeeecC
Q psy7987 76 QKVLGLIPGSCTVGADISLIDI 97 (112)
Q Consensus 76 QerLlkKLG~na~pf~~~~~~~ 97 (112)
.-+|+|.||-|||=|+||-.=|
T Consensus 59 Di~L~~~lG~~~yRfSIsWsRI 80 (469)
T PRK13511 59 DLKLAEEFGVNGIRISIAWSRI 80 (469)
T ss_pred HHHHHHHhCCCEEEeeccHhhc
Confidence 4589999999999999996554
No 43
>PF04296 DUF448: Protein of unknown function (DUF448); InterPro: IPR007393 This entry represents a group of uncharacterised proteins. Some member sequences retain zinc-binding residues. The structure of the hypothetical cytosolic protein SP0554 from Streptococcus pneumoniae revealed an alpha+beta fold that could have evolved from a glucocorticoid receptor-like zinc finger domain [].; PDB: 1G2R_A.
Probab=21.05 E-value=84 Score=20.80 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=14.6
Q ss_pred CCCceEEECcccc-ccceeEEEE
Q psy7987 9 NGDGVVLIDSDYL-KDRKVFGHV 30 (112)
Q Consensus 9 DPDGVVlVDpeyl-k~rKVFvqL 30 (112)
.|||.|++|+..- .||-+|+..
T Consensus 22 ~~~~~i~~D~~~k~~GRGaYvc~ 44 (78)
T PF04296_consen 22 TPDGEIVPDPSGKLPGRGAYVCP 44 (78)
T ss_dssp -TTS-EEEETTS---SEEEEEES
T ss_pred eCCCEEEECCCCCCCCCeEEEcC
Confidence 4588899997764 689999844
No 44
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=20.78 E-value=57 Score=22.71 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=11.4
Q ss_pred eeCC-CceEEECcccccc
Q psy7987 7 HVNG-DGVVLIDSDYLKD 23 (112)
Q Consensus 7 ~VDP-DGVVlVDpeylk~ 23 (112)
+.|+ +|+|+||++.-.|
T Consensus 27 ~~~~~~G~V~id~~~Cig 44 (98)
T PF13247_consen 27 YKDPEDGIVVIDEDKCIG 44 (98)
T ss_dssp EEETTTS-EEE-TTTCCT
T ss_pred EEEcCCCeEEechhhccC
Confidence 3467 9999999887654
Done!