Query psy7987
Match_columns 112
No_of_seqs 104 out of 171
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 23:55:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugu_A S-arrestin; arrestin fo 100.0 2E-46 6.9E-51 312.8 5.8 93 1-96 41-134 (380)
2 1suj_A CONE arrestin; sensory 100.0 2.5E-39 8.4E-44 269.7 6.1 92 1-96 26-118 (392)
3 1g4m_A Beta-arrestin1; sensory 100.0 9.1E-32 3.1E-36 222.0 5.8 94 1-96 27-121 (393)
4 3fc7_A HTR-like protein, senso 42.6 4.3 0.00015 23.9 -0.4 37 11-50 30-66 (125)
5 1d06_A Nitrogen fixation regul 39.8 4.4 0.00015 24.9 -0.7 36 11-49 27-62 (130)
6 3olo_A Two-component sensor hi 39.3 5.1 0.00018 23.2 -0.4 36 11-49 24-59 (118)
7 2vv6_A FIXL, sensor protein FI 37.7 5.1 0.00017 24.1 -0.6 37 10-49 3-39 (119)
8 2r78_A Sensor protein; sensory 35.8 5.9 0.0002 24.2 -0.6 36 11-49 22-57 (117)
9 4eet_B Phototropin-2; LOV, blu 35.6 7.3 0.00025 22.1 -0.1 38 11-48 8-45 (115)
10 1n9l_A PHOT-LOV1, putative blu 32.2 7 0.00024 23.6 -0.6 38 11-48 4-41 (109)
11 3a0s_A Sensor protein; PAS-fol 31.7 7.6 0.00026 20.8 -0.5 36 11-49 3-38 (96)
12 2pr5_A Blue-light photorecepto 30.8 8.8 0.0003 23.5 -0.3 38 11-48 10-47 (132)
13 1byw_A Protein (human ERG pota 29.9 8.8 0.0003 21.0 -0.4 37 11-47 2-38 (110)
14 3bwl_A Sensor protein; structu 28.3 15 0.0005 21.9 0.4 33 10-45 27-59 (126)
15 2gj3_A Nitrogen fixation regul 27.9 15 0.00052 22.0 0.4 36 11-49 16-51 (120)
16 1ll8_A PAS kinase; PAS domain, 26.3 17 0.00058 21.5 0.4 38 11-50 9-46 (114)
17 3fg8_A Uncharacterized protein 25.7 11 0.00039 22.9 -0.5 37 11-50 23-59 (118)
18 3mjq_A Uncharacterized protein 25.0 7.2 0.00024 22.7 -1.5 37 11-50 10-46 (126)
19 3mfx_A Sensory BOX/ggdef famil 24.9 12 0.00041 24.4 -0.5 37 11-50 18-54 (129)
20 2lse_A Four helix bundle prote 29.1 17 0.00059 25.0 0.0 38 44-86 50-87 (101)
21 3t50_A Blue-light-activated hi 22.9 16 0.00056 21.4 -0.2 39 11-49 8-46 (128)
22 2pjh_A Protein NPL4, nuclear p 22.1 35 0.0012 21.6 1.3 27 70-96 24-50 (80)
23 3luq_A Sensor protein; PAS, hi 21.7 18 0.00063 20.4 -0.1 38 10-50 13-50 (114)
24 2bl8_A Enterocine A immunity p 21.6 25 0.00085 24.7 0.6 16 70-85 67-82 (103)
25 3p7n_A Sensor histidine kinase 21.2 25 0.00087 24.4 0.5 39 11-49 74-112 (258)
26 4hia_A LOV protein; PAS, HTH, 21.0 15 0.0005 23.4 -0.7 40 10-49 17-56 (176)
No 1
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=100.00 E-value=2e-46 Score=312.83 Aligned_cols=93 Identities=38% Similarity=0.664 Sum_probs=82.8
Q ss_pred CccccceeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHH
Q psy7987 1 MTNMFVHVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVL 79 (112)
Q Consensus 1 ~~dhvd~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerL 79 (112)
.|||+++||| ||||+|||||+|||||||||+|||||||||+|||||+||||||++++|||||.+. +++||+|||||
T Consensus 41 fvdh~~~vdpvdGvv~vd~~~~~~rkvf~~l~~~fRYGred~dV~Gl~F~kdl~~~~~qvyP~~~~---~~~lT~lQe~L 117 (380)
T 3ugu_A 41 YIDHVERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGA---SGATTRLQESL 117 (380)
T ss_dssp EEECSSCBCCEEEEEEECHHHHTTCEEEEEEEEEEEECC------CCCEEEEEEEEEEEEESCCSC---CCCCCHHHHHH
T ss_pred EEeecCcccccceEEEECHHHhCCCEEEEEEEEEEecCCCccccccchhhhhhhheeEEecCCCCC---CCCCCHHHHHH
Confidence 3899999999 9999999999999999999999999999999999999999999999999998754 57899999999
Q ss_pred hhccCCCCccceeeeec
Q psy7987 80 GLIPGSCTVGADISLID 96 (112)
Q Consensus 80 lkKLG~na~pf~~~~~~ 96 (112)
+||||.|||||++.|+.
T Consensus 118 ~kKlG~nayPF~f~LP~ 134 (380)
T 3ugu_A 118 IKKLGANTYPFLLTFPD 134 (380)
T ss_dssp HHHHCTTEEEEEECCCS
T ss_pred HHHhCcCceeEEEeCCC
Confidence 99999999999999984
No 2
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=100.00 E-value=2.5e-39 Score=269.66 Aligned_cols=92 Identities=45% Similarity=0.751 Sum_probs=88.0
Q ss_pred CccccceeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHH
Q psy7987 1 MTNMFVHVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVL 79 (112)
Q Consensus 1 ~~dhvd~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerL 79 (112)
.|||+++||| ||||+|||+|+|+||||+||+|||||||||+|||||+||||+|++++|+||+. . .+++|++||||
T Consensus 26 ~vd~~~~vd~vdGvV~vd~~~lk~rkv~~~l~~~fryGred~~v~Gl~f~kel~~~~~qv~p~~-~---~~~~t~lQe~L 101 (392)
T 1suj_A 26 FVDHVEHVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYSLATQVYPPE-T---KEPLTPLQEKL 101 (392)
T ss_dssp EEECSSCBCCEEEEEEECTTTSSSCEEEEEEEEEEEEECCSSCCSSCEEEEEEEEEEEEEESCC-S---CCCCCHHHHHH
T ss_pred EEeecCccCceeeEEEEcHHHhccceEEEEEEEeeccCCCchhcCcceEEEEEEEEEEEEeCCC-C---CccccHHHHHh
Confidence 3899999999 99999999999999999999999999999999999999999999999999987 2 47899999999
Q ss_pred hhccCCCCccceeeeec
Q psy7987 80 GLIPGSCTVGADISLID 96 (112)
Q Consensus 80 lkKLG~na~pf~~~~~~ 96 (112)
+||+|.|||||+..||.
T Consensus 102 l~~~G~h~fPFsFqLP~ 118 (392)
T 1suj_A 102 MKKLGAHAYPFCFKMGT 118 (392)
T ss_dssp HHHHCSSEEEEEECCCS
T ss_pred hhcccCeeEeEEeeCCC
Confidence 99999999999999885
No 3
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=99.97 E-value=9.1e-32 Score=222.04 Aligned_cols=94 Identities=49% Similarity=0.750 Sum_probs=88.9
Q ss_pred CccccceeCC-CceEEECccccccceeEEEEeeeeeecccccccccccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHH
Q psy7987 1 MTNMFVHVNG-DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVL 79 (112)
Q Consensus 1 ~~dhvd~VDP-DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerL 79 (112)
.|||++++|| ||+|+||++++|+||||++|+|+|||||||+||||++|+|++|++++|+||+.++. +.++|++||+|
T Consensus 27 fvd~~~~~d~V~GvV~id~~~lk~r~v~v~l~~~frygr~~~~v~g~~f~ke~~~~~~~v~p~~~~~--~~~lt~lqe~l 104 (393)
T 1g4m_A 27 FVDHIDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPED--KKPLTRLQERL 104 (393)
T ss_dssp EEECSSCBCCEEEEEECCHHHHTTCEEEEEEEEEEEESCTTCCCTTTCEEEEEEEEEEEEESCSTTS--CCCCCHHHHHH
T ss_pred EEEecCCCCEEEEEEEEehhHhcccEEEEEEEEEEEecCCcceecccccceeEEEEEEEEeCCCCcc--cCccchhhhhh
Confidence 3799999999 99999999999999999999999999999999999999999999999999987643 57899999999
Q ss_pred hhccCCCCccceeeeec
Q psy7987 80 GLIPGSCTVGADISLID 96 (112)
Q Consensus 80 lkKLG~na~pf~~~~~~ 96 (112)
++|+|.++|||++.|+.
T Consensus 105 ~~~~G~h~fPF~f~LP~ 121 (393)
T 1g4m_A 105 IKKLGEHAYPFTFEIPP 121 (393)
T ss_dssp HHHSCTTEEEEEECCCT
T ss_pred hccCCceEEEEEeeCCC
Confidence 99999999999999885
No 4
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=42.62 E-value=4.3 Score=23.89 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=25.8
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccchh
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRK 50 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrK 50 (112)
||++++|++ |+=+|+.-.+.=-+|....+++|-++..
T Consensus 30 ~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~ 66 (125)
T 3fc7_A 30 DGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSA 66 (125)
T ss_dssp CEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGG
T ss_pred CeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHH
Confidence 999999965 5656654444434677778888887654
No 5
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=39.79 E-value=4.4 Score=24.91 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=26.2
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
|||+++|++ |+=+|+.-.+.=-+|-...|++|.++.
T Consensus 27 d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~ 62 (130)
T 1d06_A 27 DATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLR 62 (130)
T ss_dssp SEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred CeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHH
Confidence 999999975 566666554444477788889998765
No 6
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=39.35 E-value=5.1 Score=23.18 Aligned_cols=36 Identities=3% Similarity=0.028 Sum_probs=25.4
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
||++++|++ |+=+|+.-.+.=-+|....|++|.++.
T Consensus 24 ~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~ 59 (118)
T 3olo_A 24 EASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQ 59 (118)
T ss_dssp SEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGG
T ss_pred ceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChh
Confidence 899999964 666666444443467777788998865
No 7
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=37.74 E-value=5.1 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=26.0
Q ss_pred CCceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 10 GDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 10 PDGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
||||+++|++ |+=+|+.-.+.=-+|-...|++|-++.
T Consensus 3 ~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~ 39 (119)
T 2vv6_A 3 PDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVN 39 (119)
T ss_dssp CCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred cceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHH
Confidence 3899999965 565666554444467777888998765
No 8
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=35.77 E-value=5.9 Score=24.20 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=24.8
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
||++++|++ |+=+|+.-.+.=-+|-...|++|.++.
T Consensus 22 d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~ 57 (117)
T 2r78_A 22 DGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWG 57 (117)
T ss_dssp SEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTT
T ss_pred ceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHH
Confidence 899999975 666666544333356667788998753
No 9
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=35.61 E-value=7.3 Score=22.09 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=25.7
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccc
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTF 48 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~F 48 (112)
+|++++|++.-.|+=+|+.-.+.=-+|....|++|.++
T Consensus 8 ~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~ 45 (115)
T 4eet_B 8 KNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNA 45 (115)
T ss_dssp CSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCG
T ss_pred CcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCH
Confidence 89999998533566666654443336667778888775
No 10
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=32.18 E-value=7 Score=23.62 Aligned_cols=38 Identities=18% Similarity=0.068 Sum_probs=27.0
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccc
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTF 48 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~F 48 (112)
|||++.|++...|+=+|+.-.+.==.|-...|++|-+.
T Consensus 4 ~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~ 41 (109)
T 1n9l_A 4 HTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNC 41 (109)
T ss_dssp CEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCG
T ss_pred cEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCc
Confidence 79999998766677777754333336777778899764
No 11
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=31.71 E-value=7.6 Score=20.83 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=22.3
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
+||+++|++ |+=+|+.-.+.=-+|....+++|-++.
T Consensus 3 ~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~ 38 (96)
T 3a0s_A 3 TAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLK 38 (96)
T ss_dssp CEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred ceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHH
Confidence 789999864 455555433333356666677887664
No 12
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=30.79 E-value=8.8 Score=23.54 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=26.6
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccc
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTF 48 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~F 48 (112)
|||+++|++--.|+=+|+.-...=-+|....|++|-++
T Consensus 10 ~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~ 47 (132)
T 2pr5_A 10 VGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNC 47 (132)
T ss_dssp CEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCG
T ss_pred CcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCCh
Confidence 99999997643446666654443346778889999776
No 13
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=29.88 E-value=8.8 Score=20.95 Aligned_cols=37 Identities=5% Similarity=-0.005 Sum_probs=23.6
Q ss_pred CceEEECccccccceeEEEEeeeeeeccccccccccc
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLT 47 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~ 47 (112)
+|++++|...-.|+=+|+.-.+.=-+|....|++|.+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~ 38 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 38 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSB
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCC
Confidence 5889999764456656654433333566667788866
No 14
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=28.30 E-value=15 Score=21.85 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=20.7
Q ss_pred CCceEEECccccccceeEEEEeeeeeeccccccccc
Q psy7987 10 GDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLG 45 (112)
Q Consensus 10 PDGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmG 45 (112)
|||++++|++ |+=+|+.-...=-+|-...|++|
T Consensus 27 ~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g 59 (126)
T 3bwl_A 27 PDMIDVLDAD---GTICEVNQRFCAELGYDESEVLG 59 (126)
T ss_dssp SSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTT
T ss_pred CcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhh
Confidence 3899999975 55555543333236777778843
No 15
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=27.88 E-value=15 Score=22.03 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=24.8
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
|||+++|++ |+=+|+.-.+.=-+|-...|++|-++.
T Consensus 16 ~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~ 51 (120)
T 2gj3_A 16 IAISITDLK---ANILYANRAFRTITGYGSEEVLGKNES 51 (120)
T ss_dssp SEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGG
T ss_pred CeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHH
Confidence 899999965 666666544333367777889997653
No 16
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=26.33 E-value=17 Score=21.50 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=25.0
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccchh
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRK 50 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrK 50 (112)
|||+++|++- |+=+++.-.+.==+|-...|++|.++..
T Consensus 9 ~~i~~~d~~~--g~I~~~N~aa~~l~G~~~~el~g~~~~~ 46 (114)
T 1ll8_A 9 KAIFTVDAKT--TEILVANDKACGLLGYSSQDLIGQKLTQ 46 (114)
T ss_dssp CEEEEEETTT--CBEEEECTTHHHHHTCCTTTTTTSBGGG
T ss_pred ceEEEEECCC--CeEEEehHHHHHHhCCCHHHHcCCCHHH
Confidence 8999999741 4545554433333566777889988764
No 17
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=25.66 E-value=11 Score=22.91 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=25.6
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccchh
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRK 50 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrK 50 (112)
|||+++|++ |+=+|+.-...=-+|....|++|-++..
T Consensus 23 ~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~ 59 (118)
T 3fg8_A 23 LGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTE 59 (118)
T ss_dssp CEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHH
T ss_pred ceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHH
Confidence 999999964 5656654443333677778889987654
No 18
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=24.99 E-value=7.2 Score=22.72 Aligned_cols=37 Identities=11% Similarity=0.352 Sum_probs=24.8
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccchh
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRK 50 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrK 50 (112)
+|++++|++ |+=+|+.-.+.=-+|....+++|.++..
T Consensus 10 ~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~ 46 (126)
T 3mjq_A 10 DMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILT 46 (126)
T ss_dssp SEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHH
T ss_pred ceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHH
Confidence 899999975 5655554333333677777888887654
No 19
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=24.89 E-value=12 Score=24.44 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=27.0
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccchh
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRK 50 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrK 50 (112)
|||+++|. +|+=+|+.-.+.==+|....|++|.++..
T Consensus 18 d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~ 54 (129)
T 3mfx_A 18 EAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRN 54 (129)
T ss_dssp SEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGG
T ss_pred ceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHH
Confidence 99999996 46767775554434677777889988763
No 20
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=29.05 E-value=17 Score=25.00 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=24.7
Q ss_pred ccccchhhhhhheeeeeCCCCCCCCCCCCCHHHHHHhhccCCC
Q psy7987 44 LGLTFRKELFVTSDQIFPPLNSTTPNKPLTRLQKVLGLIPGSC 86 (112)
Q Consensus 44 mGL~FrKdl~l~t~QvyPp~~~~~~~~~lT~lQerLlkKLG~n 86 (112)
|==+||.++ +|+|-..+++. -+.|-.--|+|+||.||-
T Consensus 50 miekfrdem----eqmykdapnav-meqlleeiekllkkagsl 87 (101)
T 2lse_A 50 MIEKFRDEM----EQMYKDAPNAV-MEQLLEEIEKLLKKAGSL 87 (101)
Confidence 445777754 78887555431 123455568999999974
No 21
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=22.89 E-value=16 Score=21.43 Aligned_cols=39 Identities=18% Similarity=0.185 Sum_probs=25.1
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
+|++++|++--.|+=+|+.-.+.=-+|....|++|.++.
T Consensus 8 ~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~ 46 (128)
T 3t50_A 8 MPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCR 46 (128)
T ss_dssp SCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG
T ss_pred ccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHh
Confidence 899999973213455565444333367777788998764
No 22
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=22.10 E-value=35 Score=21.57 Aligned_cols=27 Identities=11% Similarity=0.021 Sum_probs=22.3
Q ss_pred CCCCHHHHHHhhccCCCCccceeeeec
Q psy7987 70 KPLTRLQKVLGLIPGSCTVGADISLID 96 (112)
Q Consensus 70 ~~lT~lQerLlkKLG~na~pf~~~~~~ 96 (112)
..+..+++++.+++|-+..++++.+-.
T Consensus 24 ~t~~~L~~~I~~~~~i~~~~~~l~~~~ 50 (80)
T 2pjh_A 24 ETAATFLKKVAKEFGFQNNGFSVYINR 50 (80)
T ss_dssp CCHHHHHHHHHHHTCCCTTTCCCCCSC
T ss_pred ChHHHHHHHHHHHcCCCCCcceEEecC
Confidence 468899999999999998888776533
No 23
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=21.73 E-value=18 Score=20.37 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=25.3
Q ss_pred CCceEEECccccccceeEEEEeeeeeecccccccccccchh
Q psy7987 10 GDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRK 50 (112)
Q Consensus 10 PDGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~FrK 50 (112)
|+|++++|++ |+=+++.-.+.=-+|....|++|.++..
T Consensus 13 ~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~ 50 (114)
T 3luq_A 13 PAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYD 50 (114)
T ss_dssp SSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHH
T ss_pred CceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHH
Confidence 3899999853 5555554433333677778899987763
No 24
>2bl8_A Enterocine A immunity protein; enterocin A, ORF2 protein, bacterial protein; HET: FLC; 1.6A {Enterococcus faecium} SCOP: a.29.8.2 PDB: 2bl7_A
Probab=21.62 E-value=25 Score=24.68 Aligned_cols=16 Identities=19% Similarity=-0.066 Sum_probs=13.8
Q ss_pred CCCCHHHHHHhhccCC
Q psy7987 70 KPLTRLQKVLGLIPGS 85 (112)
Q Consensus 70 ~~lT~lQerLlkKLG~ 85 (112)
-.+|+-||+|+++||.
T Consensus 67 l~ft~~qe~li~~L~~ 82 (103)
T 2bl8_A 67 IRFTEYQEELIRNLSE 82 (103)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHH
Confidence 4689999999999874
No 25
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=21.20 E-value=25 Score=24.38 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=27.4
Q ss_pred CceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 11 DGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
+||+++|+..-.|+=+|+.-.+.=-+|....|++|-++.
T Consensus 74 ~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~ 112 (258)
T 3p7n_A 74 IASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCR 112 (258)
T ss_dssp SEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGG
T ss_pred ccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChh
Confidence 899999985434666776554443467777889998753
No 26
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=20.97 E-value=15 Score=23.44 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=26.6
Q ss_pred CCceEEECccccccceeEEEEeeeeeecccccccccccch
Q psy7987 10 GDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFR 49 (112)
Q Consensus 10 PDGVVlVDpeylk~rKVFvqLtcaFRYGRED~dVmGL~Fr 49 (112)
|+||+++|++.-.|+=+|+.-.+.=-+|....|++|.++.
T Consensus 17 ~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~ 56 (176)
T 4hia_A 17 GVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCR 56 (176)
T ss_dssp SSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGG
T ss_pred CCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcc
Confidence 3899999976333666666444433367777788998744
Done!