RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7987
(112 letters)
>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
beta-arrestin 1 [TaxId: 9913]}
Length = 171
Score = 107 bits (268), Expect = 2e-31
Identities = 44/69 (63%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D +YLK+R+V+ + AFRYGREDLDVLGLTFRK+LFV + Q FPP K
Sbjct: 34 DGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPE--DKK 91
Query: 71 PLTRLQKVL 79
PLTRLQ+ L
Sbjct: 92 PLTRLQERL 100
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
arrestin [TaxId: 9913]}
Length = 173
Score = 106 bits (267), Expect = 2e-31
Identities = 31/69 (44%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 11 DGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKELFVTSDQIFPPLNSTTPNK 70
DGVVL+D + +K ++V+ + AFRYG+ED+DV+GL+FR++L+ + Q+FPP+ + +
Sbjct: 33 DGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGA---SG 89
Query: 71 PLTRLQKVL 79
TRLQ+ L
Sbjct: 90 ATTRLQESL 98
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 27.3 bits (59), Expect = 0.34
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 2 TNMFVHVNGDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLT 47
++V G++L+D+ + + +A + D+ ++ T
Sbjct: 27 IAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNT 72
>d1tocr2 g.8.1.2 (R:57-119) Ornithodorin {Soft tick (Ornithodoros
moubata) [TaxId: 6938]}
Length = 63
Score = 25.5 bits (55), Expect = 0.57
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 79 LGLIPGSCTVGADISLIDIDRGDC 102
LG P SC G DI+ D D C
Sbjct: 10 LGDPPTSCAEGTDITYYDSDSKTC 33
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 176
Score = 25.4 bits (54), Expect = 1.4
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 8 VNGDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLG 45
NG+G + + F +GR D+++LG
Sbjct: 147 TNGNGEL--------SLDELLTAVRDFHFGRLDVELLG 176
>d1y2ia_ d.230.5.1 (A:) Hypothetical protein YbjQ {Shigella
flexneri [TaxId: 623]}
Length = 109
Score = 25.1 bits (55), Expect = 1.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 65 STTPNKPLTRLQKVLGLIPGSCTVGADI 92
STTP + + G++ G +GA+I
Sbjct: 4 STTPTLEGLTIVEYCGVVTGEAILGANI 31
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 25.3 bits (54), Expect = 1.7
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 2 TNMFVHVNGDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVLGLTFRKE 51
++ V G +LI+SD + + + + D +L ++
Sbjct: 24 LASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHF 73
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
hydrophila, CphA [TaxId: 644]}
Length = 228
Score = 25.3 bits (54), Expect = 1.8
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 1 MTNMFVHVNGDGVVLIDS 18
N V+ GV ++ +
Sbjct: 22 QENSMVYFGAKGVTVVGA 39
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 24.9 bits (53), Expect = 2.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 1 MTNMFVHVNGDGVVLIDS 18
+N V G+VL+DS
Sbjct: 34 PSNGLVLNTSKGLVLVDS 51
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 105
Score = 24.1 bits (52), Expect = 2.8
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 1 MTNMFVHVNGDGVVLIDSDYLKDRKVFGHVLAAFRYGREDL--DVLGLTFRKEL 52
F + D +D +F H+L +R G+ + +EL
Sbjct: 29 SERDFFYHPETQQYFFD----RDPDIFRHILNFYRTGKLHYPRHECISAYDEEL 78
>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
(Bacillus anthracis) [TaxId: 1392]}
Length = 722
Score = 24.5 bits (53), Expect = 4.1
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 62 PLNSTTPNKPLTRLQKVLGLIPGSCTVGADISLI 95
P +T + P + +KV G I + + A L+
Sbjct: 210 PEKWSTASDPYSDFEKVTGRIDKNVSPEARHPLV 243
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase
{Xanthomonas maltophilia [TaxId: 40324]}
Length = 266
Score = 24.2 bits (51), Expect = 4.2
Identities = 8/42 (19%), Positives = 14/42 (33%)
Query: 3 NMFVHVNGDGVVLIDSDYLKDRKVFGHVLAAFRYGREDLDVL 44
+ DG VL+D + + A DL ++
Sbjct: 38 TALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLI 79
>d1vr4a1 d.230.5.1 (A:1-103) Hypothetical protein BC1012 {Bacillus
cereus [TaxId: 1396]}
Length = 103
Score = 23.6 bits (51), Expect = 4.3
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 65 STTPNKPLTRLQKVLGLIPGSCTVGADI 92
+TT + + + ++ G +GA+I
Sbjct: 4 TTTSGIQGKEIIEYIDIVNGEAIMGANI 31
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 24.0 bits (51), Expect = 5.6
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 1 MTNMFVHVNGDGVVLIDS 18
+ N+ G +++D+
Sbjct: 103 LANITFIRGDSGWIVVDT 120
>d2pbka1 b.57.1.1 (A:3-230) KSHV protease {Kaposi's
sarcoma-associated herpesvirus [TaxId: 37296]}
Length = 228
Score = 23.2 bits (50), Expect = 8.8
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 85 SCTVGADISLIDIDRG 100
VG + L + G
Sbjct: 47 ETEVGWTLGLFQVSHG 62
>d1o6ea_ b.57.1.1 (A:) Epstein-Barr virus protease {Human
herpesvirus 4 [TaxId: 10376]}
Length = 232
Score = 23.2 bits (50), Expect = 8.8
Identities = 4/16 (25%), Positives = 5/16 (31%)
Query: 85 SCTVGADISLIDIDRG 100
VG+ L G
Sbjct: 48 DAPVGSVFGLYQSSAG 63
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 23.1 bits (48), Expect = 10.0
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 1 MTNMFVHVNGDGVVLIDS 18
+N + +N L+D+
Sbjct: 34 PSNGMIVINNHQAALLDT 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.145 0.465
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,071
Number of extensions: 19570
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 23
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)