BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7988
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DHU2|RIR2_YLDV Ribonucleoside-diphosphate reductase small chain OS=Yaba-like
disease virus GN=20L PE=3 SV=1
Length = 325
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 23 QHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
++Y ++NPFDFMENISLEGKTNFFE++V EYQK SVM+++ + VF LD F
Sbjct: 275 KYYCSKNPFDFMENISLEGKTNFFEKRVSEYQKMSVMSNKKDNVFSLDIDF 325
>sp|Q7LG56|RIR2B_HUMAN Ribonucleoside-diphosphate reductase subunit M2 B OS=Homo sapiens
GN=RRM2B PE=1 SV=1
Length = 351
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
AENPFDFMENISLEGKTNFFE++V EYQ+ +VMA+ + VF LD F
Sbjct: 305 AENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351
>sp|Q5R9G0|RIR2B_PONAB Ribonucleoside-diphosphate reductase subunit M2 B OS=Pongo abelii
GN=RRM2B PE=2 SV=1
Length = 351
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
AENPFDFMENISLEGKTNFFE++V EYQ+ +VMA+ + VF LD F
Sbjct: 305 AENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351
>sp|Q4R741|RIR2B_MACFA Ribonucleoside-diphosphate reductase subunit M2 B OS=Macaca
fascicularis GN=RRM2B PE=2 SV=1
Length = 351
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
AENPFDFMENISLEGKTNFFE++V EYQ+ +VMA+ + VF LD F
Sbjct: 305 AENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351
>sp|Q6PEE3|RIR2B_MOUSE Ribonucleoside-diphosphate reductase subunit M2 B OS=Mus musculus
GN=Rrm2b PE=1 SV=1
Length = 351
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
AENPFDFMENISLEGKTNFFE++V EYQ+ +VMA+ + VF LD F
Sbjct: 305 AENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351
>sp|P79733|RIR2_DANRE Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio
GN=rrm2 PE=1 SV=1
Length = 386
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 37/49 (75%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y ENPFDFMENISLEGKTNFFE++VGEYQ+ VM+ + F LD F
Sbjct: 338 YRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSGTTDNTFTLDADF 386
>sp|O57175|RIR2_VACCA Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Ankara) GN=MVA032L PE=2 SV=1
Length = 319
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y NPFDFMENISLEGKTNFFE++VGEYQK VM+ +DN F LD F
Sbjct: 272 YNVTNPFDFMENISLEGKTNFFEKRVGEYQKMGVMSQEDNH-FSLDVDF 319
>sp|P20493|RIR2_VACCC Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Copenhagen) GN=F4L PE=2 SV=1
Length = 319
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y NPFDFMENISLEGKTNFFE++VGEYQK VM+ +DN F LD F
Sbjct: 272 YNVTNPFDFMENISLEGKTNFFEKRVGEYQKMGVMSQEDNH-FSLDVDF 319
>sp|P11158|RIR2_VACCW Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain Western Reserve) GN=VACWR043 PE=2 SV=1
Length = 319
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y NPFDFMENISLEGKTNFFE++VGEYQK VM+ +DN F LD F
Sbjct: 272 YNVTNPFDFMENISLEGKTNFFEKRVGEYQKMGVMSQEDNH-FSLDVDF 319
>sp|P29883|RIR2_VACCP Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus
(strain L-IVP) GN=F14 PE=2 SV=1
Length = 319
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y NPFDFMENISLEGKTNFFE++VGEYQK VM+ +DN F LD F
Sbjct: 272 YNVTNPFDFMENISLEGKTNFFEKRVGEYQKMGVMSQKDNH-FSLDVDF 319
>sp|O15910|RIR2_TRYBB Ribonucleoside-diphosphate reductase small chain OS=Trypanosoma
brucei brucei GN=RNR2 PE=2 SV=1
Length = 337
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 44/52 (84%), Gaps = 1/52 (1%)
Query: 23 QHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVM-ADQDNQVFRLDEQF 73
+HY ++NPFDFM+ ISL+GKTNFFE+KVGEYQK+ VM +++ ++VF LD F
Sbjct: 286 RHYNSKNPFDFMDMISLQGKTNFFEKKVGEYQKAGVMSSERSSKVFSLDADF 337
>sp|Q4KLN6|RIR2_RAT Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus
norvegicus GN=Rrm2 PE=2 SV=1
Length = 390
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 36/47 (76%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
ENPFDFMENISLEGKTNFFE++VGEYQ+ VM++ F LD F
Sbjct: 344 VENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSNSTENSFTLDADF 390
>sp|P11157|RIR2_MOUSE Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus
GN=Rrm2 PE=1 SV=1
Length = 390
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 36/47 (76%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
ENPFDFMENISLEGKTNFFE++VGEYQ+ VM++ F LD F
Sbjct: 344 VENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSNSTENSFTLDADF 390
>sp|P31350|RIR2_HUMAN Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens
GN=RRM2 PE=1 SV=1
Length = 389
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 35/47 (74%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
ENPFDFMENISLEGKTNFFE++VGEYQ+ VM+ F LD F
Sbjct: 343 VENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 389
>sp|Q4R7Q7|RIR2_MACFA Ribonucleoside-diphosphate reductase subunit M2 OS=Macaca
fascicularis GN=RRM2 PE=2 SV=1
Length = 389
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/46 (67%), Positives = 35/46 (76%)
Query: 28 ENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
ENPFDFMENISLEGKTNFFE++VGEYQ+ VM+ F LD F
Sbjct: 344 ENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 389
>sp|Q6Y657|RIR2B_ARATH Putative ribonucleoside-diphosphate reductase small chain B
OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1
Length = 333
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 7/56 (12%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMAD-------QDNQVFRLDEQF 73
Y NPFD+ME ISL+GKTNFFE++VGEYQK+S+M+ D+ VF+LDE F
Sbjct: 278 YGVSNPFDWMELISLQGKTNFFEKRVGEYQKASIMSSVHGNAAFNDDHVFKLDEDF 333
>sp|Q9LSD0|RIR2C_ARATH Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis
thaliana GN=TSO2 PE=2 SV=1
Length = 332
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 40/55 (72%), Gaps = 6/55 (10%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQ------DNQVFRLDEQF 73
Y NPFD+ME ISL+GKTNFFE++VG+YQK+SVM+ DN VF LDE F
Sbjct: 278 YGVTNPFDWMELISLQGKTNFFEKRVGDYQKASVMSSVNGNGAFDNHVFSLDEDF 332
>sp|P33799|RIR2_VAR67 Ribonucleoside-diphosphate reductase small chain OS=Variola virus
(isolate Human/India/Ind3/1967) GN=C8L PE=2 SV=1
Length = 319
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y NP DFMENISLEGKTNFFE++VGEYQK VM+ +DN F LD F
Sbjct: 272 YNVTNPSDFMENISLEGKTNFFEKRVGEYQKMGVMSQEDNH-FSLDVDF 319
>sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small chain OS=Nicotiana
tabacum PE=2 SV=1
Length = 329
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 4/53 (7%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQD----NQVFRLDEQF 73
Y A+NPFD+ME ISL+GKTNFFE++VGEYQK+SVM+ + F+LDE F
Sbjct: 277 YNAQNPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGATHEFKLDEDF 329
>sp|P07201|RIR2_SPISO Ribonucleoside-diphosphate reductase small chain OS=Spisula
solidissima PE=2 SV=2
Length = 384
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMA---DQDNQVFRLDEQF 73
Y ENPFDFME+ISLEGKTNFFE++VGEYQK VM+ D+ F LD F
Sbjct: 333 YNKENPFDFMEHISLEGKTNFFEKRVGEYQKMGVMSGGNTGDSHAFTLDADF 384
>sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis
thaliana GN=RNR2A PE=1 SV=2
Length = 341
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDN 64
Y AENPFD+ME ISL+GKTNFFE++VGEYQK+SVM++ N
Sbjct: 289 YKAENPFDWMEFISLQGKTNFFEKRVGEYQKASVMSNLQN 328
>sp|Q60561|RIR2_MESAU Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus
auratus GN=RRM2 PE=2 SV=1
Length = 386
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 4/47 (8%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
ENPFDFMENISLEGKTNFFE++VGEYQ+ VM++ F LD F
Sbjct: 344 VENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSNS----FTLDADF 386
>sp|P36603|RIR2_SCHPO Ribonucleoside-diphosphate reductase small chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=suc22 PE=3 SV=2
Length = 391
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 5/56 (8%)
Query: 23 QHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVM-----ADQDNQVFRLDEQF 73
++Y NPFDFMENISL GKTNFFE+KV +YQ + VM A++D+ F +DE F
Sbjct: 336 KYYNVTNPFDFMENISLAGKTNFFEKKVSDYQIAGVMSGTKRAEKDDHTFTIDEDF 391
>sp|P48592|RIR2_DROME Ribonucleoside-diphosphate reductase subunit M2 OS=Drosophila
melanogaster GN=RnrS PE=1 SV=2
Length = 393
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y +NPF+FME ISL+GKTNFFE+KVGEYQ+ V+++ + VF LD F
Sbjct: 345 YNTKNPFNFMEMISLDGKTNFFEKKVGEYQRMGVVSNPLDNVFTLDADF 393
>sp|O46310|RIR2_LEIAM Ribonucleoside-diphosphate reductase small subunit OS=Leishmania
amazonensis PE=3 SV=1
Length = 345
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Query: 23 QHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQD-NQVFRLDEQF 73
+HY + PFDFME ISL+GKTNFFE++VGEYQK+ VM+ + ++ F L E F
Sbjct: 294 KHYRSTQPFDFMEMISLQGKTNFFEKRVGEYQKAGVMSTEGTSKKFSLSEDF 345
>sp|P09938|RIR2_YEAST Ribonucleoside-diphosphate reductase small chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR2 PE=1
SV=2
Length = 399
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%), Gaps = 3/54 (5%)
Query: 23 QHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQ---VFRLDEQF 73
++Y ENPFDFMENISL GKTNFFE++V +YQK+ VM+ Q F +E F
Sbjct: 346 KYYKVENPFDFMENISLAGKTNFFEKRVSDYQKAGVMSKSTKQEAGAFTFNEDF 399
>sp|P50650|RIR2_PLAF4 Ribonucleoside-diphosphate reductase small chain OS=Plasmodium
falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1
Length = 349
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 41/49 (83%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
+ ++NPF++M+ ISL+GKTNFFE++V +YQKS VMA + +QVF L+ +F
Sbjct: 301 FHSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRKDQVFCLNTEF 349
>sp|P42170|RIR2_CAEEL Ribonucleoside-diphosphate reductase small chain OS=Caenorhabditis
elegans GN=rnr-2 PE=3 SV=1
Length = 381
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y ++NPFDFMENIS++GKTNFFE++V EYQ+ VM ++ + F L+ F
Sbjct: 333 YKSKNPFDFMENISIDGKTNFFEKRVSEYQRPGVMVNEAERQFDLEADF 381
>sp|Q9C167|RIR2_NEUCR Ribonucleoside-diphosphate reductase small chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-2 PE=3 SV=2
Length = 410
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 40/62 (64%), Gaps = 13/62 (20%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVM-----ADQDNQV--------FRLDE 71
Y + NPFDFMENISL GKTNFFE++VG+YQK+ VM AD D +V F DE
Sbjct: 349 YRSTNPFDFMENISLGGKTNFFEKRVGDYQKAGVMNSTKKADADAEVAKNENGGDFTFDE 408
Query: 72 QF 73
F
Sbjct: 409 DF 410
>sp|P50649|RIR2_PLAFG Ribonucleoside-diphosphate reductase small subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR2 PE=3 SV=1
Length = 322
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 39/47 (82%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
++NPF++M+ ISL+GKTNFFE++V +YQKS VMA + + VF L+ +F
Sbjct: 276 SKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRKDHVFCLNTEF 322
>sp|Q8SRR2|RIR2_ENCCU Ribonucleoside-diphosphate reductase small chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0730 PE=3 SV=1
Length = 325
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 25 YFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
Y A NPFDFMENISL GKTNFF+++ +YQK+ V + N FR+D F
Sbjct: 277 YNATNPFDFMENISLVGKTNFFDKRESQYQKAFVGIENGNDSFRIDVDF 325
>sp|Q9QTF2|RIR2_RSIV Ribonucleoside-diphosphate reductase small chain OS=Red sea bream
iridovirus GN=RR-2 PE=3 SV=1
Length = 312
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 23 QHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDEQF 73
+ Y NPFDFM+NIS+EGKTNFFER+V EYQ+ V + F ++E+F
Sbjct: 263 KMYNVSNPFDFMDNISIEGKTNFFERRVSEYQRMGVFTPSSME-FTMNEEF 312
>sp|P49723|RIR4_YEAST Ribonucleoside-diphosphate reductase small chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR4 PE=1
SV=1
Length = 345
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 23 QHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMA 60
++Y A NPF+FME+++ GKT FFE+KV +YQK+S M+
Sbjct: 293 KYYNAVNPFEFMEDVATAGKTTFFEKKVSDYQKASDMS 330
>sp|P42521|RIR2_DICDI Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium
discoideum GN=rnrB-1 PE=2 SV=2
Length = 338
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSV 58
+ NPF++ME ISL+ K+NFFE KV EY K+ V
Sbjct: 285 SSNPFEWMEMISLQRKSNFFEGKVAEYAKTGV 316
>sp|Q9PL92|RIR2_CHLMU Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdB PE=3 SV=1
Length = 346
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 25 YFAENPFDFM-ENISLEGKTNFFERKVGEYQKSSVMA 60
Y +NPF +M E I L + NFFE +V EYQ ++ +
Sbjct: 309 YHTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLT 345
>sp|O84835|RIR2_CHLTR Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdB PE=1 SV=1
Length = 346
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 25 YFAENPFDFM-ENISLEGKTNFFERKVGEYQKSSVM 59
Y +NPF +M E I L + NFFE +V EYQ ++ +
Sbjct: 309 YHTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASL 344
>sp|Q9Z6S4|RIR2_CHLPN Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia
pneumoniae GN=nrdB PE=3 SV=1
Length = 346
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 25 YFAENPFDFM-ENISLEGKTNFFERKVGEYQKS 56
Y + NPF +M E + L + NFFE +V EYQ +
Sbjct: 309 YHSRNPFPWMSETMDLNKEKNFFETRVTEYQTA 341
>sp|Q197B2|RIR2_IIV3 Probable ribonucleoside-diphosphate reductase small subunit 048L
OS=Invertebrate iridescent virus 3 GN=IIV3-048L PE=3
SV=1
Length = 376
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 27 AENPFDFMENI-SLEGKTNFFERKVGEYQKSSVMAD 61
ENP ++E++ + TNFFE K EY K+S+ D
Sbjct: 338 VENPLPWVEDLLNAPSHTNFFENKPTEYAKASLTGD 373
>sp|Q0AB55|PURA_ALHEH Adenylosuccinate synthetase OS=Alkalilimnicola ehrlichei (strain
MLHE-1) GN=purA PE=3 SV=1
Length = 432
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 15 LTRYCFVLQHYFAENPFDFME 35
L + FVLQHYF E P DF +
Sbjct: 166 LDYHNFVLQHYFHEQPIDFQD 186
>sp|Q1H397|HEMH_METFK Ferrochelatase OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=hemH PE=3 SV=1
Length = 344
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 26 FAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRLDE 71
F+ + + +E I++EGK+ F E GEY + D D + + E
Sbjct: 286 FSSDCLETLEEIAMEGKSLFLEGGGGEYHYIPALNDNDTWIKAMRE 331
>sp|Q7T6Y9|RIR2_MIMIV Ribonucleoside-diphosphate reductase small chain OS=Acanthamoeba
polyphaga mimivirus GN=RNR2 PE=3 SV=2
Length = 417
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 27 AENPFDFMENISLEGKTNFFERKVGEYQKSSV 58
+NPF++M+ I + K NFFE++ Y +++
Sbjct: 374 VDNPFEYMKKIDVFVKANFFEKRNDAYSNANI 405
>sp|B3ERM8|LON_AMOA5 Lon protease OS=Amoebophilus asiaticus (strain 5a2) GN=lon PE=3
SV=1
Length = 827
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 1 DKIHAG-KSRTHDLALTRYCFVLQHYFAENPF-DFMENISLEGKTNFFERKVGEY 53
DK+H + HD + R VLQ EN F D ++ + EG+ + ++V +Y
Sbjct: 244 DKVHTDIEQLQHDFYIRRQIKVLQEELGENEFEDEIDELRAEGEKKQWPKEVADY 298
>sp|P55730|Y4ZC_RHISN Putative cysteine protease YopT-like y4zC OS=Rhizobium sp. (strain
NGR234) GN=NGR_a00490 PE=3 SV=1
Length = 261
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 21 VLQHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFR 68
+L YFAE + +++G T F+ GE+ +V +DQ + +FR
Sbjct: 194 LLSLYFAEGGAHTVATSAMDGNTTLFDPNFGEF---TVQSDQIDDLFR 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,694,310
Number of Sequences: 539616
Number of extensions: 810712
Number of successful extensions: 1790
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1751
Number of HSP's gapped (non-prelim): 47
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)