Query psy7988
Match_columns 73
No_of_seqs 116 out of 552
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 23:56:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7988.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7988hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jk0a_ a.25.1.2 (A:) Ribonucl 98.0 1.3E-06 9.6E-11 62.2 2.3 23 14-36 312-334 (334)
2 d1syya_ a.25.1.2 (A:) Ribonucl 97.6 8E-06 5.9E-10 57.0 2.0 21 14-34 297-317 (317)
3 d1mxra_ a.25.1.2 (A:) Ribonucl 97.3 5.6E-05 4.1E-09 53.1 2.7 23 14-36 314-337 (339)
4 d1w68a_ a.25.1.2 (A:) Ribonucl 93.4 0.017 1.3E-06 38.7 2.2 18 14-31 264-281 (281)
5 d1r2fa_ a.25.1.2 (A:) Ribonucl 91.0 0.032 2.3E-06 37.8 1.1 22 14-35 255-282 (283)
6 d3dhza1 a.25.1.2 (A:14-297) Ri 66.7 0.79 5.7E-05 30.4 0.8 15 14-28 257-271 (284)
7 d1znna1 c.1.2.6 (A:18-271) Pyr 32.4 7.9 0.00057 26.2 1.3 34 4-37 195-234 (254)
8 d1v7la_ c.8.2.1 (A:) Isopropyl 24.0 18 0.0013 21.9 1.8 21 5-25 63-83 (162)
9 d1jk0b_ a.25.1.2 (B:) Ribonucl 21.7 16 0.0012 23.6 1.3 12 14-25 274-285 (285)
10 d1qq5a_ c.108.1.1 (A:) L-2-Hal 21.5 26 0.0019 20.3 2.2 27 5-31 143-175 (245)
No 1
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Probab=97.96 E-value=1.3e-06 Score=62.24 Aligned_cols=23 Identities=48% Similarity=0.535 Sum_probs=21.2
Q ss_pred HHHHHcCCCcccCCCCCcchhhh
Q psy7988 14 ALTRYCFVLQHYFAENPFDFMEN 36 (73)
Q Consensus 14 ~ll~~lG~~kiY~~~NPf~Wme~ 36 (73)
.+|.+||++++|+++|||||||.
T Consensus 312 r~L~~LG~~~~f~~~NP~~wme~ 334 (334)
T d1jk0a_ 312 RLLVAFGNKKYYKVENPFDFMEN 334 (334)
T ss_dssp HHHHTTTCCCSSCCCCCCGGGGC
T ss_pred HHHHHCCCCCCCCCCCCCCcccc
Confidence 47999999999999999999984
No 2
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]}
Probab=97.64 E-value=8e-06 Score=56.99 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.7
Q ss_pred HHHHHcCCCcccCCCCCcchh
Q psy7988 14 ALTRYCFVLQHYFAENPFDFM 34 (73)
Q Consensus 14 ~ll~~lG~~kiY~~~NPf~Wm 34 (73)
..|.+||++++|+++||+|||
T Consensus 297 ~~L~~LG~~~~f~~~NP~~wm 317 (317)
T d1syya_ 297 RRLERIGLKPIYHTKNPFPWM 317 (317)
T ss_dssp HHHHHTTCCCSSCCCCSCTTC
T ss_pred HHHHHCCCCCCCCCCCCCCCC
Confidence 478999999999999999998
No 3
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]}
Probab=97.29 E-value=5.6e-05 Score=53.09 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=20.4
Q ss_pred HHHHHcCCCcccCC-CCCcchhhh
Q psy7988 14 ALTRYCFVLQHYFA-ENPFDFMEN 36 (73)
Q Consensus 14 ~ll~~lG~~kiY~~-~NPf~Wme~ 36 (73)
.+|.+||++++|++ .||+|||+.
T Consensus 314 ~~L~~lG~~~~f~~~~NP~~w~~~ 337 (339)
T d1mxra_ 314 IRMQAVGLDLPFQTRSNPIPWINT 337 (339)
T ss_dssp HHHHHTTCCCCSCCCCCSCGGGGG
T ss_pred HHHHHCCCCCCCCCCCCChHHHHh
Confidence 47999999999987 499999975
No 4
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.42 E-value=0.017 Score=38.66 Aligned_cols=18 Identities=28% Similarity=0.216 Sum_probs=16.5
Q ss_pred HHHHHcCCCcccCCCCCc
Q psy7988 14 ALTRYCFVLQHYFAENPF 31 (73)
Q Consensus 14 ~ll~~lG~~kiY~~~NPf 31 (73)
..|++||++++|+++|||
T Consensus 264 ~rL~~lG~~~~f~~~NPf 281 (281)
T d1w68a_ 264 RLMLELGFNKIFRVENPF 281 (281)
T ss_dssp HHHHHHTSCCSSCCCCCC
T ss_pred HHHHHCCCCCCCCCCCcC
Confidence 468999999999999997
No 5
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]}
Probab=90.99 E-value=0.032 Score=37.75 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=17.2
Q ss_pred HHHHHcCCCcccCCC----CC--cchhh
Q psy7988 14 ALTRYCFVLQHYFAE----NP--FDFME 35 (73)
Q Consensus 14 ~ll~~lG~~kiY~~~----NP--f~Wme 35 (73)
.+|++||++++|+++ || +.|+.
T Consensus 255 ~~L~~lG~~~~f~~~~~~~NP~~~~~l~ 282 (283)
T d1r2fa_ 255 KALMNLGYEALFPPEMADVNPAILAALS 282 (283)
T ss_dssp HHHHHTTCCCCSCTTTSCCCHHHHHHHC
T ss_pred HHHHHCCCCCCCCCCCCCCCcchhccCC
Confidence 489999999999765 77 56653
No 6
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=66.71 E-value=0.79 Score=30.39 Aligned_cols=15 Identities=0% Similarity=-0.283 Sum_probs=12.8
Q ss_pred HHHHHcCCCcccCCC
Q psy7988 14 ALTRYCFVLQHYFAE 28 (73)
Q Consensus 14 ~ll~~lG~~kiY~~~ 28 (73)
.+|.+||++++|+++
T Consensus 257 ~~L~~lG~~~~f~~~ 271 (284)
T d3dhza1 257 KALNNLGYEGLFPTD 271 (284)
T ss_dssp HHHHHTTCCCSSCGG
T ss_pred HHHHHCCCCCCCCCc
Confidence 479999999999764
No 7
>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}
Probab=32.35 E-value=7.9 Score=26.25 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=27.5
Q ss_pred cCCCCCcchHHHHHHcCCCccc------CCCCCcchhhhc
Q psy7988 4 HAGKSRTHDLALTRYCFVLQHY------FAENPFDFMENI 37 (73)
Q Consensus 4 ~~~~~~~~~~~ll~~lG~~kiY------~~~NPf~Wme~i 37 (73)
-+|-..|-|++|..+||++-+| .+.||.....-+
T Consensus 195 ~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a~A~ 234 (254)
T d1znna1 195 AGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAI 234 (254)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHH
T ss_pred cCCCCChhhHHHHHHcCCCEEEEcchhhcCCCHHHHHHHH
Confidence 3688899999999999999887 478887755544
No 8
>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.96 E-value=18 Score=21.95 Aligned_cols=21 Identities=14% Similarity=-0.009 Sum_probs=18.2
Q ss_pred CCCCCcchHHHHHHcCCCccc
Q psy7988 5 AGKSRTHDLALTRYCFVLQHY 25 (73)
Q Consensus 5 ~~~~~~~~~~ll~~lG~~kiY 25 (73)
.|.||-|-+.-|+.+|.+.+=
T Consensus 63 ~GSSRE~A~~al~~~Gi~aVI 83 (162)
T d1v7la_ 63 IGSSRESAALALKALGIAGVI 83 (162)
T ss_dssp BSCCCTHHHHHHHHHTCCEEE
T ss_pred cCCccchhhHHHHhccEeeEe
Confidence 588999999999999987663
No 9
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Probab=21.65 E-value=16 Score=23.56 Aligned_cols=12 Identities=17% Similarity=-0.086 Sum_probs=10.3
Q ss_pred HHHHHcCCCccc
Q psy7988 14 ALTRYCFVLQHY 25 (73)
Q Consensus 14 ~ll~~lG~~kiY 25 (73)
..|.+||++++|
T Consensus 274 ~~L~~lG~~~~y 285 (285)
T d1jk0b_ 274 GLLQGFGNEKYY 285 (285)
T ss_dssp HHHHHTTCCCCC
T ss_pred HHHHHCcCCCCC
Confidence 368999999987
No 10
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}
Probab=21.48 E-value=26 Score=20.32 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=17.8
Q ss_pred CCCCCcchHH---HHHHcCCCc---ccCCCCCc
Q psy7988 5 AGKSRTHDLA---LTRYCFVLQ---HYFAENPF 31 (73)
Q Consensus 5 ~~~~~~~~~~---ll~~lG~~k---iY~~~NPf 31 (73)
.|..||||.. .++.+|+++ +|-..+|.
T Consensus 143 ~~~~KP~p~~f~~a~~~lg~~p~e~l~VgD~~~ 175 (245)
T d1qq5a_ 143 KRVFKPHPDSYALVEEVLGVTPAEVLFVSSNGF 175 (245)
T ss_dssp GTCCTTSHHHHHHHHHHHCCCGGGEEEEESCHH
T ss_pred ccccCccHHHHHHHHHHhCCChhhEEEEeCCHH
Confidence 4677999865 677788876 44445543
Done!