RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7988
         (73 letters)



>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
           (Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
          Length = 334

 Score = 25.5 bits (55), Expect = 0.68
 Identities = 10/14 (71%), Positives = 12/14 (85%)

Query: 23  QHYFAENPFDFMEN 36
           ++Y  ENPFDFMEN
Sbjct: 321 KYYKVENPFDFMEN 334


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.4 bits (52), Expect = 1.5
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 18  YCFVLQHYFAENPFDFMENISLEGKTNFFERKVGEYQKSSVMADQDNQVFRL 69
           + F+L H   +  F  ME ++L     + E+++G Y   SV+ + ++++ RL
Sbjct: 56  FIFLLGH---DIDFGHMEAVNLLSSNRYTEKQIG-YLFISVLVNSNSELIRL 103


>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
           disease virus [TaxId: 11976]}
          Length = 497

 Score = 23.1 bits (49), Expect = 4.5
 Identities = 6/36 (16%), Positives = 8/36 (22%)

Query: 1   DKIHAGKSRTHDLALTRYCFVLQHYFAENPFDFMEN 36
           DK+  GK R                F    +     
Sbjct: 176 DKVKEGKKRLLWGCDVGVAVCAAAVFHNICYKLKMV 211


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 256,471
Number of extensions: 8831
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 5
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)