Query psy799
Match_columns 209
No_of_seqs 211 out of 1565
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 23:58:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 100.0 2.8E-34 6.1E-39 268.5 12.0 155 2-156 263-471 (479)
2 TIGR00911 2A0308 L-type amino 99.8 4.9E-21 1.1E-25 179.4 12.2 154 2-156 294-501 (501)
3 PRK11357 frlA putative fructos 99.7 3E-17 6.6E-22 151.4 12.7 131 2-132 254-438 (445)
4 TIGR00905 2A0302 transporter, 99.7 4.9E-16 1.1E-20 144.9 14.4 132 2-138 257-445 (473)
5 TIGR03810 arg_ornith_anti argi 99.6 2.1E-15 4.7E-20 140.4 13.5 129 2-135 253-437 (468)
6 PRK10655 potE putrescine trans 99.6 3.7E-15 8E-20 137.1 13.2 125 2-131 248-430 (438)
7 TIGR00909 2A0306 amino acid tr 99.6 5.5E-15 1.2E-19 135.1 13.0 122 2-127 254-428 (429)
8 TIGR00906 2A0303 cationic amin 99.6 9.6E-15 2.1E-19 139.8 14.0 81 2-82 290-370 (557)
9 TIGR00908 2A0305 ethanolamine 99.6 1.3E-14 2.9E-19 133.6 13.4 128 2-131 250-432 (442)
10 PRK10644 arginine:agmatin anti 99.6 1.6E-14 3.5E-19 133.5 13.8 125 2-131 250-430 (445)
11 PRK11387 S-methylmethionine tr 99.5 4E-14 8.7E-19 132.0 11.4 126 3-129 266-456 (471)
12 PRK15049 L-asparagine permease 99.5 8.1E-13 1.8E-17 124.7 13.1 80 2-82 279-359 (499)
13 PRK10197 gamma-aminobutyrate t 99.5 6.7E-13 1.5E-17 123.3 12.3 118 17-136 256-436 (446)
14 PRK10435 cadB lysine/cadaverin 99.4 1E-12 2.3E-17 121.4 13.1 80 2-82 246-326 (435)
15 PRK10746 putative transport pr 99.4 7.6E-13 1.7E-17 123.6 11.8 80 2-82 259-339 (461)
16 PRK10836 lysine transporter; P 99.4 6.4E-13 1.4E-17 124.6 10.9 102 25-127 296-462 (489)
17 TIGR01773 GABAperm gamma-amino 99.4 1.4E-12 3.1E-17 120.6 11.9 67 15-82 274-341 (452)
18 PRK11021 putative transporter; 99.4 2E-12 4.3E-17 118.3 12.2 76 6-82 240-316 (410)
19 PRK10580 proY putative proline 99.4 4.6E-12 1E-16 117.6 12.1 78 3-82 259-338 (457)
20 PRK11049 D-alanine/D-serine/gl 99.4 6.1E-12 1.3E-16 117.4 11.6 80 2-82 270-350 (469)
21 TIGR00930 2a30 K-Cl cotranspor 99.3 2.4E-11 5.3E-16 123.0 14.7 108 25-139 386-547 (953)
22 TIGR00913 2A0310 amino acid pe 99.3 1.6E-11 3.5E-16 114.2 12.3 57 25-82 289-345 (478)
23 TIGR00907 2A0304 amino acid pe 99.3 4.3E-11 9.3E-16 111.6 12.4 79 4-82 279-363 (482)
24 PRK10249 phenylalanine transpo 99.3 3.7E-11 8.1E-16 112.0 11.6 79 3-82 269-348 (458)
25 PRK10238 aromatic amino acid t 99.3 4.8E-11 1E-15 111.2 12.1 80 2-82 259-339 (456)
26 TIGR00910 2A0307_GadC glutamat 99.2 2.2E-10 4.9E-15 108.5 14.6 80 2-82 253-338 (507)
27 PF13520 AA_permease_2: Amino 99.2 3E-10 6.6E-15 103.4 13.4 80 2-82 245-328 (426)
28 TIGR03813 put_Glu_GABA_T putat 99.1 2.5E-09 5.4E-14 99.9 13.4 56 26-82 281-336 (474)
29 COG0833 LysP Amino acid transp 99.1 7.2E-10 1.6E-14 105.7 9.7 57 25-82 325-381 (541)
30 COG1113 AnsP Gamma-aminobutyra 99.0 4E-10 8.7E-15 105.6 3.7 80 2-82 262-342 (462)
31 TIGR03428 ureacarb_perm permea 98.9 1.5E-08 3.2E-13 94.8 12.6 64 19-82 290-356 (475)
32 COG0531 PotE Amino acid transp 98.9 2.1E-08 4.5E-13 91.6 12.9 70 13-82 273-343 (466)
33 PF00324 AA_permease: Amino ac 98.8 1.2E-09 2.6E-14 101.9 2.0 69 14-82 276-345 (478)
34 KOG1286|consensus 98.8 1.7E-08 3.8E-13 97.3 9.5 55 27-82 322-376 (554)
35 PRK15238 inner membrane transp 98.7 1.1E-07 2.5E-12 89.4 11.4 55 27-82 318-372 (496)
36 KOG1289|consensus 98.5 1.5E-07 3.2E-12 90.1 5.9 78 5-82 316-398 (550)
37 KOG2082|consensus 97.7 8.7E-05 1.9E-09 73.8 7.8 56 26-82 496-553 (1075)
38 PF13906 AA_permease_C: C-term 97.6 0.00014 3E-09 49.2 4.9 45 83-132 6-50 (51)
39 KOG1288|consensus 95.6 0.074 1.6E-06 53.2 9.5 57 26-82 372-430 (945)
40 TIGR00837 araaP aromatic amino 95.4 0.34 7.4E-06 43.8 12.4 71 2-82 237-315 (381)
41 TIGR00796 livcs branched-chain 95.1 0.1 2.2E-06 48.5 8.1 58 9-81 252-310 (378)
42 KOG2083|consensus 78.4 32 0.00069 34.4 11.3 57 26-82 316-374 (643)
43 PHA02764 hypothetical protein; 76.0 3.7 8.1E-05 38.1 4.1 25 47-71 258-282 (399)
44 TIGR00359 cello_pts_IIC phosph 53.0 71 0.0015 30.2 8.0 95 37-133 293-415 (423)
45 TIGR00410 lacE PTS system, lac 53.0 71 0.0015 30.2 8.0 95 37-133 293-415 (423)
46 PRK10297 PTS system N,N'-diace 49.4 93 0.002 29.7 8.2 93 37-131 310-429 (452)
47 COG1455 CelB Phosphotransferas 46.3 1.4E+02 0.003 28.6 8.8 94 37-132 295-415 (432)
48 TIGR00817 tpt Tpt phosphate/ph 43.4 20 0.00044 31.3 2.6 28 109-136 275-302 (302)
49 KOG3879|consensus 38.7 28 0.00061 30.8 2.7 36 142-177 193-237 (267)
50 PF04246 RseC_MucC: Positive r 37.1 70 0.0015 24.9 4.5 41 86-131 76-116 (135)
51 PRK09592 celD cellobiose phosp 35.5 2E+02 0.0044 27.3 8.1 88 45-134 326-438 (449)
52 PF06181 DUF989: Protein of un 34.0 3.7E+02 0.008 24.6 9.3 95 19-125 168-268 (300)
53 PF03222 Trp_Tyr_perm: Tryptop 33.8 3.9E+02 0.0084 24.8 10.9 28 26-53 275-302 (394)
54 KOG2632|consensus 32.5 3.7E+02 0.008 24.1 9.9 80 19-98 84-173 (258)
55 PRK10862 SoxR reducing system 31.4 1.3E+02 0.0028 24.4 5.4 15 86-100 83-97 (154)
56 KOG0569|consensus 30.3 2.6E+02 0.0056 27.1 8.0 101 44-151 117-231 (485)
57 PF06365 CD34_antigen: CD34/Po 28.6 1.1E+02 0.0025 26.2 4.7 22 115-136 112-133 (202)
58 PF11143 DUF2919: Protein of u 28.6 1.2E+02 0.0026 24.7 4.7 32 109-140 54-85 (149)
59 PRK13629 threonine/serine tran 26.5 5.8E+02 0.013 24.5 12.1 33 26-58 316-348 (443)
60 PRK11453 O-acetylserine/cystei 26.4 1.5E+02 0.0032 25.9 5.3 47 86-136 250-296 (299)
61 PF01102 Glycophorin_A: Glycop 25.8 78 0.0017 25.1 3.0 12 122-133 83-94 (122)
62 PF07136 DUF1385: Protein of u 24.6 3.8E+02 0.0082 23.6 7.3 12 63-74 133-144 (236)
63 TIGR00814 stp serine transport 24.4 5.8E+02 0.013 23.7 10.9 56 2-57 252-312 (397)
64 PF05525 Branch_AA_trans: Bran 23.9 2.5E+02 0.0054 26.8 6.5 42 13-54 262-304 (427)
65 COG1114 BrnQ Branched-chain am 23.5 6.3E+02 0.014 24.3 9.1 39 13-51 264-303 (431)
66 PF09991 DUF2232: Predicted me 23.1 4.7E+02 0.01 22.2 13.8 29 25-53 157-185 (290)
67 COG3086 RseC Positive regulato 21.7 2.6E+02 0.0056 23.0 5.4 22 86-107 83-104 (150)
68 TIGR00394 lac_pts_IIC phosphot 21.6 5.6E+02 0.012 24.1 8.4 88 44-133 290-403 (412)
No 1
>KOG1287|consensus
Probab=100.00 E-value=2.8e-34 Score=268.49 Aligned_cols=155 Identities=39% Similarity=0.698 Sum_probs=148.6
Q ss_pred CChHHHhcChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF 81 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~ 81 (209)
+|++|+.+|+|+|++|+++++|.++|++|+++++|++|++|+.++++||++|++|||||||..|+++|.++.||.+|+++
T Consensus 263 ls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf 342 (479)
T KOG1287|consen 263 LSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLF 342 (479)
T ss_pred cCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c--------------------------------------------------cchhHHHHHHHHHHHHHhhccccCchhHH
Q psy799 82 Q--------------------------------------------------VPLVIPIFVLIMSIVLSLTPIVTKPAPQF 111 (209)
Q Consensus 82 ~--------------------------------------------------vpliiPil~ll~~l~Ll~~~l~~~p~~~~ 111 (209)
+ +|+++|++++++|+++++.|++.++..++
T Consensus 343 ~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~ 422 (479)
T KOG1287|consen 343 SGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVET 422 (479)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHHHHHHhheeeeecCCccc
Confidence 7 88999999999999999999999954779
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCcchhH----HHHHHHHhhhccCCCC
Q psy799 112 LIAVAFIVLGILVYIPFVYYQYRMPYLDN----ITYFIQVLLKVVPPDQ 156 (209)
Q Consensus 112 l~gl~~il~Gl~iY~~~v~~~~~p~~~~~----~t~~~Q~l~~v~~~~~ 156 (209)
++|+++++.|+|+|+++.|+|.||+|+++ +|++||++++|+|++.
T Consensus 423 ~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~~it~~~q~l~~~v~~~~ 471 (479)
T KOG1287|consen 423 LIGIGIILSGVPFYFLFIHWKKKPKWLRKISESITRVCQKLFNVVPDEK 471 (479)
T ss_pred hhHHHHHHHhhhhheEEEEecCCcHHHHHhhHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999975 7999999999999855
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.85 E-value=4.9e-21 Score=179.36 Aligned_cols=154 Identities=35% Similarity=0.599 Sum_probs=136.4
Q ss_pred CChHHHhcChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF 81 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~ 81 (209)
++++++.++++++..+.++.+|..++++.+.+.++++|++|+.+++.||++|++||||++|++|+++|+|+++|+.|+++
T Consensus 294 ~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~ 373 (501)
T TIGR00911 294 LSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLI 373 (501)
T ss_pred CCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHH
Confidence 57788888877777888888886678899999999999999999999999999999999999999999999999999987
Q ss_pred c--------------------------------------------------cchhHHHHHHHHHHHHHhhccccCchhHH
Q psy799 82 Q--------------------------------------------------VPLVIPIFVLIMSIVLSLTPIVTKPAPQF 111 (209)
Q Consensus 82 ~--------------------------------------------------vpliiPil~ll~~l~Ll~~~l~~~p~~~~ 111 (209)
. .|.+.|+++++.|+++++.+++.+| ...
T Consensus 374 ~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l~~~~~~~~~~~~~~~~~-~~~ 452 (501)
T TIGR00911 374 VCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPP-VGC 452 (501)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHHHHHHHHHHHHhhhhhccCc-hhh
Confidence 6 4557899999999999998888887 566
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCcchh----HHHHHHHHhhhccCCCC
Q psy799 112 LIAVAFIVLGILVYIPFVYYQYRMPYLD----NITYFIQVLLKVVPPDQ 156 (209)
Q Consensus 112 l~gl~~il~Gl~iY~~~v~~~~~p~~~~----~~t~~~Q~l~~v~~~~~ 156 (209)
.++.++++.|+++|+...+++++|+|.+ +.|+.+|+.+++.|+++
T Consensus 453 ~~~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (501)
T TIGR00911 453 GVGFIIMLTGVPVYFFGVWWQNKPKWFRYLIVSKTVLLQKVLEVVKPQK 501 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHhhccccceeeEEccccceecCCCC
Confidence 7888999999999998778888888863 58999999999999874
No 3
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.73 E-value=3e-17 Score=151.38 Aligned_cols=131 Identities=22% Similarity=0.338 Sum_probs=108.8
Q ss_pred CChHHHhcChHHHHHHHHH--hcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccc
Q psy799 2 DPVFEMIASPAVAVAFSER--VLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPA 78 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~--vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~A 78 (209)
++++++.+++++..+.++. .+|+. ++++.+.+.+++++++|+.+++.+|++|++||||++|++|+++|+|++||++|
T Consensus 254 ~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a 333 (445)
T PRK11357 254 MPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVS 333 (445)
T ss_pred CCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHH
Confidence 4678888776655555555 36764 67888899999999999999999999999999999999999999999999999
Q ss_pred hhcc-------------------------------------------------cc--hhHHHHHHHHHHHHHhhccccCc
Q psy799 79 VLFQ-------------------------------------------------VP--LVIPIFVLIMSIVLSLTPIVTKP 107 (209)
Q Consensus 79 ll~~-------------------------------------------------vp--liiPil~ll~~l~Ll~~~l~~~p 107 (209)
++++ +| .++|+++++.|+++++.+++.+|
T Consensus 334 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (445)
T PRK11357 334 IILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAP 413 (445)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCc
Confidence 9886 33 36899999999999988777888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhh
Q psy799 108 APQFLIAVAFIVLGILVYIPFVYYQ 132 (209)
Q Consensus 108 ~~~~l~gl~~il~Gl~iY~~~v~~~ 132 (209)
......+++++++|+++|+++.+++
T Consensus 414 ~~~~~~~~~~~~~g~~~y~~~~~~~ 438 (445)
T PRK11357 414 IPGLICAVIVIATGLPAYAFWAKRS 438 (445)
T ss_pred HHHHHHHHHHHHHhhhHHhheechh
Confidence 3334568899999999998765544
No 4
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.68 E-value=4.9e-16 Score=144.86 Aligned_cols=132 Identities=20% Similarity=0.311 Sum_probs=108.0
Q ss_pred CChHHHhcChHH-HHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccch
Q psy799 2 DPVFEMIASPAV-AVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAV 79 (209)
Q Consensus 2 ls~~el~~S~av-Av~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~Al 79 (209)
++++++.+++.+ ..+++++.+|++ +.++.++++++++|+.|+++++.||++|+|||||.+|++|+++|+ ++||++|+
T Consensus 257 ~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~~~v~~-~~tP~~Ai 335 (473)
T TIGR00905 257 LPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVNK-NGAPSVAL 335 (473)
T ss_pred cCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHhhCc-cCCCHHHH
Confidence 577888877776 667778888885 578999999999999999999999999999999999999999995 59999998
Q ss_pred hcc----------------------------------------------c-------c--hhHHHHHHHHHHHHHhhccc
Q psy799 80 LFQ----------------------------------------------V-------P--LVIPIFVLIMSIVLSLTPIV 104 (209)
Q Consensus 80 l~~----------------------------------------------v-------p--liiPil~ll~~l~Ll~~~l~ 104 (209)
+++ - | .++|++.++.|++++..
T Consensus 336 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 412 (473)
T TIGR00905 336 LLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIWLLYA--- 412 (473)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHH---
Confidence 775 0 1 36677777777776654
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhhhhcCCcch
Q psy799 105 TKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYL 138 (209)
Q Consensus 105 ~~p~~~~l~gl~~il~Gl~iY~~~v~~~~~p~~~ 138 (209)
.++ .+..++++++++|+++|+.+.+.|+++.+-
T Consensus 413 ~~~-~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~ 445 (473)
T TIGR00905 413 AGL-KYLLLGFILYAPGIIFYGRARKERGKHVFN 445 (473)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 445 567789999999999999988777666543
No 5
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.64 E-value=2.1e-15 Score=140.39 Aligned_cols=129 Identities=14% Similarity=0.188 Sum_probs=98.8
Q ss_pred CChHHHhcChHH-HHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccch
Q psy799 2 DPVFEMIASPAV-AVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAV 79 (209)
Q Consensus 2 ls~~el~~S~av-Av~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~Al 79 (209)
+|.+|+.+++.+ ....+++.+|++ +.++.+++++|++|+.|+++++.||++|++||||++|++|+++| |++||++|+
T Consensus 253 ~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al 331 (468)
T TIGR03810 253 MTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNAL 331 (468)
T ss_pred cCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHH
Confidence 567888765444 445667788886 58899999999999999999999999999999999999999999 789999998
Q ss_pred hcc----------------------------------------------c--------chhHHHHHHHHHHHHHhhcccc
Q psy799 80 LFQ----------------------------------------------V--------PLVIPIFVLIMSIVLSLTPIVT 105 (209)
Q Consensus 80 l~~----------------------------------------------v--------pliiPil~ll~~l~Ll~~~l~~ 105 (209)
+++ - ..+++.+..+.|++++.. .
T Consensus 332 ~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~ 408 (468)
T TIGR03810 332 WLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQLLIGLVALLYAVWLIYA---A 408 (468)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHH---h
Confidence 875 0 013444555555555443 3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy799 106 KPAPQFLIAVAFIVLGILVYIPFVYYQYRM 135 (209)
Q Consensus 106 ~p~~~~l~gl~~il~Gl~iY~~~v~~~~~p 135 (209)
.+ ...+++.++++.|+|+|+...++|+++
T Consensus 409 ~~-~~~~~~~~~~~~g~~~y~~~~~~~~~~ 437 (468)
T TIGR03810 409 GL-KYLLLSAILYAPGIYFYARARKEKGGP 437 (468)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44 567788888999999998755544343
No 6
>PRK10655 potE putrescine transporter; Provisional
Probab=99.63 E-value=3.7e-15 Score=137.12 Aligned_cols=125 Identities=22% Similarity=0.202 Sum_probs=100.6
Q ss_pred CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
+|.+|+.+++.+..+..++.+|++ ++++.++++++++++.|+++++.+|++|++||||++|++|+++| |++||++|++
T Consensus 248 ~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~-~~~tP~~all 326 (438)
T PRK10655 248 VPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQGML 326 (438)
T ss_pred CCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhC-cCCCCHHHHH
Confidence 467888777776666777888885 68889999999999999999999999999999999999999999 7799999987
Q ss_pred cc---------------------------------------------------------cchhHHHHHHHHHHHHHhhcc
Q psy799 81 FQ---------------------------------------------------------VPLVIPIFVLIMSIVLSLTPI 103 (209)
Q Consensus 81 ~~---------------------------------------------------------vpliiPil~ll~~l~Ll~~~l 103 (209)
++ .|.++|++..+.|++++.
T Consensus 327 ~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 403 (438)
T PRK10655 327 IIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFIAFVGALYSFYALY--- 403 (438)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHH---
Confidence 64 223566667777665544
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhhh
Q psy799 104 VTKPAPQFLIAVAFIVLGILVYIPFVYY 131 (209)
Q Consensus 104 ~~~p~~~~l~gl~~il~Gl~iY~~~v~~ 131 (209)
.+|.....++.++++.|+++|+++.++
T Consensus 404 -~~~~~~~~~~~~~~~~g~~~y~~~~~~ 430 (438)
T PRK10655 404 -SSGEEAMLYGSIVTFLGWTLYGLISPR 430 (438)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456335677899999999999875443
No 7
>TIGR00909 2A0306 amino acid transporter.
Probab=99.61 E-value=5.5e-15 Score=135.11 Aligned_cols=122 Identities=25% Similarity=0.378 Sum_probs=100.2
Q ss_pred CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
.+.+++.+++.+....+++..|++ ++++.+.++++++++.++++++.||++|++||||.+|++|+++|+|++||++|++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~ 333 (429)
T TIGR00909 254 VPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSII 333 (429)
T ss_pred cCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHH
Confidence 467788777766666667777775 6899999999999999999999999999999999999999999999999999988
Q ss_pred cc--------------------------------------------------cch--hHHHHHHHHHHHHHhhccccCch
Q psy799 81 FQ--------------------------------------------------VPL--VIPIFVLIMSIVLSLTPIVTKPA 108 (209)
Q Consensus 81 ~~--------------------------------------------------vpl--iiPil~ll~~l~Ll~~~l~~~p~ 108 (209)
++ .|. +.+++.++.|++++.. ..+
T Consensus 334 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 409 (429)
T TIGR00909 334 IFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLLLN---LGP- 409 (429)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHH---ccH-
Confidence 76 221 4566666667776654 455
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q psy799 109 PQFLIAVAFIVLGILVYIP 127 (209)
Q Consensus 109 ~~~l~gl~~il~Gl~iY~~ 127 (209)
.+..++++|.++|+++|.+
T Consensus 410 ~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 410 GTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 6788899999999999965
No 8
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.60 E-value=9.6e-15 Score=139.80 Aligned_cols=81 Identities=25% Similarity=0.396 Sum_probs=65.0
Q ss_pred CChHHHhcChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF 81 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~ 81 (209)
+|.+++..+++.+..+.....+..+.++.+++.+++++++++.+++.+|++|+|||||.+|++|+++|+|++||+.|+++
T Consensus 290 vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~ 369 (557)
T TIGR00906 290 MPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVV 369 (557)
T ss_pred ccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHH
Confidence 45566655455554433222222467899999999999999999999999999999999999999999999999999887
Q ss_pred c
Q psy799 82 Q 82 (209)
Q Consensus 82 ~ 82 (209)
.
T Consensus 370 ~ 370 (557)
T TIGR00906 370 S 370 (557)
T ss_pred H
Confidence 6
No 9
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.59 E-value=1.3e-14 Score=133.60 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=101.8
Q ss_pred CChHHHhcChHHHHHHHHHhcCch---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccc
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPF---QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPA 78 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~---a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~A 78 (209)
.+++++.+++.+..+..+..+|+. ..++.+...++++++.|+.+++.+|++|++||||.+|++|+++| |++||+.|
T Consensus 250 ~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~A 328 (442)
T TIGR00908 250 ADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLA 328 (442)
T ss_pred CCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHH
Confidence 356778776666667777887752 35667777788899999999999999999999999999999999 99999999
Q ss_pred hhcc--------------------------------------------------cc--hhHHHHHHHHHHHHHhhccccC
Q psy799 79 VLFQ--------------------------------------------------VP--LVIPIFVLIMSIVLSLTPIVTK 106 (209)
Q Consensus 79 ll~~--------------------------------------------------vp--liiPil~ll~~l~Ll~~~l~~~ 106 (209)
++++ .| .+.|++.++.|+++++..++.+
T Consensus 329 il~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~ 408 (442)
T TIGR00908 329 IVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYVD 408 (442)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcC
Confidence 9876 33 4789999999999988877777
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhh
Q psy799 107 PAPQFLIAVAFIVLGILVYIPFVYY 131 (209)
Q Consensus 107 p~~~~l~gl~~il~Gl~iY~~~v~~ 131 (209)
| .....++.+.+.+..+|+++.++
T Consensus 409 ~-~~~~~~~~~~~~~~~~~~l~~~~ 432 (442)
T TIGR00908 409 P-RVVVGAVAIFVVLIGYYFLYSRH 432 (442)
T ss_pred h-HHHHHHHHHHHHHHHHHHhhhhc
Confidence 7 34444566666667777776443
No 10
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.59 E-value=1.6e-14 Score=133.49 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=103.1
Q ss_pred CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
+|.+|+..++.+..+.+++.+|++ +.++.+.+++++++++|+.++..+|+.|++||||.+|++|+++| |++||++|++
T Consensus 250 ~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~-~~~tP~~Ai~ 328 (445)
T PRK10644 250 IPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLL 328 (445)
T ss_pred CCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHH
Confidence 567788767777777788888885 57888899999999999999999999999999999999999999 5799999987
Q ss_pred cc-----------------------------------------------------cc--hhHHHHHHHHHHHHHhhcccc
Q psy799 81 FQ-----------------------------------------------------VP--LVIPIFVLIMSIVLSLTPIVT 105 (209)
Q Consensus 81 ~~-----------------------------------------------------vp--liiPil~ll~~l~Ll~~~l~~ 105 (209)
++ .| .++|+++++.|++++.. .
T Consensus 329 ~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~ 405 (445)
T PRK10644 329 IVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTLIAFVYCIWAVVG---S 405 (445)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccchhHHHHHHHHHHHHHHHH---h
Confidence 76 11 36888999999988864 3
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhh
Q psy799 106 KPAPQFLIAVAFIVLGILVYIPFVYY 131 (209)
Q Consensus 106 ~p~~~~l~gl~~il~Gl~iY~~~v~~ 131 (209)
++ .+..++.++++.|+++|+...++
T Consensus 406 ~~-~~~~~~~~~~~~~~~~y~~~~~~ 430 (445)
T PRK10644 406 GA-KEVMWSFVTLMVITAFYALNYNR 430 (445)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 56778888899999999765443
No 11
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.54 E-value=4e-14 Score=131.97 Aligned_cols=126 Identities=18% Similarity=0.253 Sum_probs=95.0
Q ss_pred ChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799 3 PVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF 81 (209)
Q Consensus 3 s~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~ 81 (209)
|.+|+..++.+.++.+++..+++ +.++.++++++++++.|+.+++.||++|+|||||++|++|+++| |+++|++|+++
T Consensus 266 p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~ 344 (471)
T PRK11387 266 PMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSV 344 (471)
T ss_pred CccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHH
Confidence 44565544455556667766664 67899999999999999999999999999999999999999999 67999999876
Q ss_pred c-------------------------------------------------------------cch--hHHHHHHHHHHHH
Q psy799 82 Q-------------------------------------------------------------VPL--VIPIFVLIMSIVL 98 (209)
Q Consensus 82 ~-------------------------------------------------------------vpl--iiPil~ll~~l~L 98 (209)
. +|. ++|+++++.|+++
T Consensus 345 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 424 (471)
T PRK11387 345 SMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLA 424 (471)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHH
Confidence 5 011 5788888888777
Q ss_pred HhhccccCch-hHHHHHHHHHHHHHHHHHhhh
Q psy799 99 SLTPIVTKPA-PQFLIAVAFIVLGILVYIPFV 129 (209)
Q Consensus 99 l~~~l~~~p~-~~~l~gl~~il~Gl~iY~~~v 129 (209)
++...+..+. .....++++++.|+++|+++.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (471)
T PRK11387 425 CVGLAFDPSQRIALWCGIPFVALCYGAYYLTQ 456 (471)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7653332221 224567778888888888753
No 12
>PRK15049 L-asparagine permease; Provisional
Probab=99.45 E-value=8.1e-13 Score=124.72 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=67.6
Q ss_pred CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
+|++++..++.+.++..++..+++ +.++.+.++++++++.|+.+++.||++|++||||++|++|+++| |+++|.+|++
T Consensus 279 ~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail 357 (499)
T PRK15049 279 LPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGIL 357 (499)
T ss_pred cchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHH
Confidence 456677655555556666665554 68899999999999999999999999999999999999999999 8899999997
Q ss_pred cc
Q psy799 81 FQ 82 (209)
Q Consensus 81 ~~ 82 (209)
++
T Consensus 358 ~~ 359 (499)
T PRK15049 358 AT 359 (499)
T ss_pred HH
Confidence 65
No 13
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.45 E-value=6.7e-13 Score=123.26 Aligned_cols=118 Identities=16% Similarity=0.256 Sum_probs=94.2
Q ss_pred HHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc-------------
Q psy799 17 FSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ------------- 82 (209)
Q Consensus 17 ~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~------------- 82 (209)
..+...+++ +.++.+++.++++++.|+.+++.||++|++||||++|++|+++| |+++|++|++++
T Consensus 256 ~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~ 334 (446)
T PRK10197 256 VLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYY 334 (446)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 344444454 57899999999999999999999999999999999999999999 889999998876
Q ss_pred ---------------------------------------------cc--hhHHHHHHHHHHHHHhhcccc-CchhHHHHH
Q psy799 83 ---------------------------------------------VP--LVIPIFVLIMSIVLSLTPIVT-KPAPQFLIA 114 (209)
Q Consensus 83 ---------------------------------------------vp--liiPil~ll~~l~Ll~~~l~~-~p~~~~l~g 114 (209)
.| .+.|+++++.|+++++..++. ++ ....++
T Consensus 335 ~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 413 (446)
T PRK10197 335 APAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQ-QLEVIS 413 (446)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcch-HHHHHH
Confidence 22 268888888887777664443 34 556678
Q ss_pred HHHHHHHHHHHH-hhhhhhcCCc
Q psy799 115 VAFIVLGILVYI-PFVYYQYRMP 136 (209)
Q Consensus 115 l~~il~Gl~iY~-~~v~~~~~p~ 136 (209)
++++++|++.|+ +..||++.-.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~ 436 (446)
T PRK10197 414 TGLLAIGIICTVPIMARWKKLVL 436 (446)
T ss_pred HHHHHHHHHhhhHHHhhhccccc
Confidence 889999999998 6666665443
No 14
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.45 E-value=1e-12 Score=121.37 Aligned_cols=80 Identities=21% Similarity=0.172 Sum_probs=70.8
Q ss_pred CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
+|.+|+.+++.+.++.+++.+|++ +.++.+++++++++++|++++..+|..+++||||.+|++|+++| |+++|..|++
T Consensus 246 ~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~n-k~g~P~~Al~ 324 (435)
T PRK10435 246 FPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVD-KNGIPKKGLL 324 (435)
T ss_pred CCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHH
Confidence 577888777777667778888876 57888889999999999999999999999999999999999999 8899999987
Q ss_pred cc
Q psy799 81 FQ 82 (209)
Q Consensus 81 ~~ 82 (209)
++
T Consensus 325 ~~ 326 (435)
T PRK10435 325 LA 326 (435)
T ss_pred HH
Confidence 64
No 15
>PRK10746 putative transport protein YifK; Provisional
Probab=99.44 E-value=7.6e-13 Score=123.58 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=64.5
Q ss_pred CChHHHhcChHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
+|++|+..++.+.++..++...+ .+.++.+.+.++++++.|+.+++.||++|++||||++|++|+++| |+++|++|++
T Consensus 259 ~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~ 337 (461)
T PRK10746 259 FPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVA 337 (461)
T ss_pred eCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHH
Confidence 45666664444444444444333 467899999999999999999999999999999999999999999 8899999987
Q ss_pred cc
Q psy799 81 FQ 82 (209)
Q Consensus 81 ~~ 82 (209)
+.
T Consensus 338 ~~ 339 (461)
T PRK10746 338 VS 339 (461)
T ss_pred HH
Confidence 54
No 16
>PRK10836 lysine transporter; Provisional
Probab=99.43 E-value=6.4e-13 Score=124.57 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc----------------------
Q psy799 25 FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ---------------------- 82 (209)
Q Consensus 25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~---------------------- 82 (209)
.+.++.+.++++++++.|+.+++.||++|++||||++|++|+++| |++||++|++++
T Consensus 296 ~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l 374 (489)
T PRK10836 296 AAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWL 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 367899999999999999999999999999999999999999999 779999998876
Q ss_pred ---------------------------------------cc--hhHHHHHHHHHHHHHhhccccCch--hHHHHHHHHHH
Q psy799 83 ---------------------------------------VP--LVIPIFVLIMSIVLSLTPIVTKPA--PQFLIAVAFIV 119 (209)
Q Consensus 83 ---------------------------------------vp--liiPil~ll~~l~Ll~~~l~~~p~--~~~l~gl~~il 119 (209)
+| ++.|+++++.|+++++...+.++. .....+++..+
T Consensus 375 ~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (489)
T PRK10836 375 LNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGGVAATY 454 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Confidence 12 267888888888888764444320 11456778888
Q ss_pred HHHHHHHh
Q psy799 120 LGILVYIP 127 (209)
Q Consensus 120 ~Gl~iY~~ 127 (209)
+|+|+|.+
T Consensus 455 ~g~~~~~~ 462 (489)
T PRK10836 455 IGIPLFLI 462 (489)
T ss_pred HHHHHHHH
Confidence 99998874
No 17
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.42 E-value=1.4e-12 Score=120.59 Aligned_cols=67 Identities=27% Similarity=0.387 Sum_probs=58.1
Q ss_pred HHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 15 VAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 15 v~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
+...+...+++ +.++.+.++++++++.|+.+++.||++|++||||++|++|+++| |+++|.+|++++
T Consensus 274 ~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~ 341 (452)
T TIGR01773 274 VAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLAS 341 (452)
T ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHH
Confidence 33445444444 57889999999999999999999999999999999999999999 789999999876
No 18
>PRK11021 putative transporter; Provisional
Probab=99.41 E-value=2e-12 Score=118.29 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=62.9
Q ss_pred HHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 6 EMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 6 el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
|..++++......++.+|.. .+++.+.+.+++++++|+++++.||++|++||||.+|++|+++| |++||.+|++++
T Consensus 240 ~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~ 316 (410)
T PRK11021 240 DKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAV 316 (410)
T ss_pred chhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHH
Confidence 33333333444556778875 57888889999999999999999999999999999999999999 779999998765
No 19
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.37 E-value=4.6e-12 Score=117.63 Aligned_cols=78 Identities=24% Similarity=0.257 Sum_probs=62.1
Q ss_pred ChHHHhcChHHHHHHHHHhcCc-h-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 3 PVFEMIASPAVAVAFSERVLGP-F-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 3 s~~el~~S~avAv~~a~~vlG~-~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
|++|+..++.+.+...+. .|. + +.++.+.+.+++++++|+.+++.||++|++||||.+|++|+++| |++||++|++
T Consensus 259 p~~~i~~~~~p~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~ 336 (457)
T PRK10580 259 PWNQVGTNGSPFVLTFQH-MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVL 336 (457)
T ss_pred ccCCCCccCChHHHHHHH-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHH
Confidence 556665443333344444 343 3 57888888999999999999999999999999999999999999 6799999987
Q ss_pred cc
Q psy799 81 FQ 82 (209)
Q Consensus 81 ~~ 82 (209)
++
T Consensus 337 ~~ 338 (457)
T PRK10580 337 VM 338 (457)
T ss_pred HH
Confidence 65
No 20
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.35 E-value=6.1e-12 Score=117.45 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=66.5
Q ss_pred CChHHHhcChHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
.|++++.+++.+..+..+...++ .+.++.+.++++++++.|+.+++.||++|++||||++|++|+++| |++||+.|++
T Consensus 270 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~ 348 (469)
T PRK11049 270 TPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLT 348 (469)
T ss_pred cCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHH
Confidence 35677766655555555554455 467899999999999999999999999999999999999999999 5699999987
Q ss_pred cc
Q psy799 81 FQ 82 (209)
Q Consensus 81 ~~ 82 (209)
++
T Consensus 349 ~~ 350 (469)
T PRK11049 349 FS 350 (469)
T ss_pred HH
Confidence 75
No 21
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.32 E-value=2.4e-11 Score=123.05 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=86.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCch--hHhhcccCCCCccccchhcc--------------------
Q psy799 25 FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML--QAFSFVHVKRLTPAPAVLFQ-------------------- 82 (209)
Q Consensus 25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP--~~fs~ih~k~~TP~~All~~-------------------- 82 (209)
+++++.+++.++++|+.|+++++++|++|++||||++| ++|+++|+|+++|+.|++++
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li 465 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII 465 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56899999999999999999999999999999999999 89999999999999999887
Q ss_pred --------------------------------cchhHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy799 83 --------------------------------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVY 130 (209)
Q Consensus 83 --------------------------------vpliiPil~ll~~l~Ll~~~l~~~p~~~~l~gl~~il~Gl~iY~~~v~ 130 (209)
...++|+++++.|++++.. ..+.+.++.+++++.+|+++.|
T Consensus 466 s~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~-------i~w~~ali~~~i~~~ly~~~~~ 538 (953)
T TIGR00930 466 SNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFL-------ISWWAALVAMVIALFLYKYVTY 538 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Confidence 0135677777777766654 2234445556667777877767
Q ss_pred hhcCCcchh
Q psy799 131 YQYRMPYLD 139 (209)
Q Consensus 131 ~~~~p~~~~ 139 (209)
++....|.+
T Consensus 539 ~~~~~~wg~ 547 (953)
T TIGR00930 539 KKPDVNWGS 547 (953)
T ss_pred cCCCCCcch
Confidence 666667774
No 22
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.32 E-value=1.6e-11 Score=114.17 Aligned_cols=57 Identities=23% Similarity=0.386 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 25 FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
.+.++.++++++++++.|+.+++.||++|++||||.+|++|+++| |++||.+|++++
T Consensus 289 ~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~ 345 (478)
T TIGR00913 289 LPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVS 345 (478)
T ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHH
Confidence 367899999999999999999999999999999999999999999 789999998876
No 23
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.27 E-value=4.3e-11 Score=111.64 Aligned_cols=79 Identities=22% Similarity=0.324 Sum_probs=65.1
Q ss_pred hHHHhcChH--HHHHHHHHhcCc-h-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCch--hHhhcccCCCCcccc
Q psy799 4 VFEMIASPA--VAVAFSERVLGP-F-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML--QAFSFVHVKRLTPAP 77 (209)
Q Consensus 4 ~~el~~S~a--vAv~~a~~vlG~-~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP--~~fs~ih~k~~TP~~ 77 (209)
++++.+++. +.++.....+|. + +.++.+.++++.+++.|+.+++.||++|++||||.+| ++|+++|+|+++|.+
T Consensus 279 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ 358 (482)
T TIGR00907 279 IDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLN 358 (482)
T ss_pred HHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHH
Confidence 455655432 344455566776 4 4578888999999999999999999999999999999 999999999999999
Q ss_pred chhcc
Q psy799 78 AVLFQ 82 (209)
Q Consensus 78 All~~ 82 (209)
|++++
T Consensus 359 ai~~~ 363 (482)
T TIGR00907 359 AVWLS 363 (482)
T ss_pred HHHHH
Confidence 99887
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=99.26 E-value=3.7e-11 Score=111.96 Aligned_cols=79 Identities=13% Similarity=0.201 Sum_probs=64.8
Q ss_pred ChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799 3 PVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF 81 (209)
Q Consensus 3 s~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~ 81 (209)
|.+|+..++.+.+...++..+++ +.++.+.+.++++++.|+.+++.||++|++||||.+|++|+++| |+++|++|+++
T Consensus 269 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~ 347 (458)
T PRK10249 269 PWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLML 347 (458)
T ss_pred cccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHH
Confidence 44555444344445555655654 67888899999999999999999999999999999999999999 78999999987
Q ss_pred c
Q psy799 82 Q 82 (209)
Q Consensus 82 ~ 82 (209)
+
T Consensus 348 ~ 348 (458)
T PRK10249 348 S 348 (458)
T ss_pred H
Confidence 6
No 25
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.26 E-value=4.8e-11 Score=111.18 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=65.2
Q ss_pred CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
+|++++.+++.+.+...+..-+++ +.++.+.+.++.+++.|+.+++.||++|++||||.+|++|+++| |+++|++|++
T Consensus 259 ~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail 337 (456)
T PRK10238 259 MPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTIL 337 (456)
T ss_pred cChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHH
Confidence 456677655444444444443343 67889999999999999999999999999999999999999999 6799999998
Q ss_pred cc
Q psy799 81 FQ 82 (209)
Q Consensus 81 ~~ 82 (209)
++
T Consensus 338 ~~ 339 (456)
T PRK10238 338 VS 339 (456)
T ss_pred HH
Confidence 87
No 26
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.22 E-value=2.2e-10 Score=108.48 Aligned_cols=80 Identities=23% Similarity=0.264 Sum_probs=61.1
Q ss_pred CChHHHhcChHHHHHHH---HHhcCch---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCcc
Q psy799 2 DPVFEMIASPAVAVAFS---ERVLGPF---QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTP 75 (209)
Q Consensus 2 ls~~el~~S~avAv~~a---~~vlG~~---a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP 75 (209)
+|.+|+..++.+...+. ....++. ..++.+.++++.+|++|+++++.||++|++||||.+|++|+++| |+++|
T Consensus 253 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P 331 (507)
T TIGR00910 253 IPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVP 331 (507)
T ss_pred cChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhC-cCCCc
Confidence 35666654444333332 2222222 35677888888999999999999999999999999999999999 88999
Q ss_pred ccchhcc
Q psy799 76 APAVLFQ 82 (209)
Q Consensus 76 ~~All~~ 82 (209)
.+|++++
T Consensus 332 ~~a~~~~ 338 (507)
T TIGR00910 332 VPLVIIQ 338 (507)
T ss_pred HHHHHHH
Confidence 9999887
No 27
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.19 E-value=3e-10 Score=103.36 Aligned_cols=80 Identities=30% Similarity=0.434 Sum_probs=68.4
Q ss_pred CChHHHhcChH---HHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCcccc
Q psy799 2 DPVFEMIASPA---VAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAP 77 (209)
Q Consensus 2 ls~~el~~S~a---vAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~ 77 (209)
+|++++..+++ +...++++..|++ .+++.++++++++++.|+.+++.+|++|++||||++|++|+++| |+++|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~-k~~~P~~ 323 (426)
T PF13520_consen 245 LPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVN-KFGTPYN 323 (426)
T ss_dssp STHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTS-SSSSCHH
T ss_pred ccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhcc-ccCCcee
Confidence 46667765433 3556677777665 68999999999999999999999999999999999999999999 9999999
Q ss_pred chhcc
Q psy799 78 AVLFQ 82 (209)
Q Consensus 78 All~~ 82 (209)
|+++.
T Consensus 324 a~~~~ 328 (426)
T PF13520_consen 324 AIILV 328 (426)
T ss_dssp HHHHH
T ss_pred eehhh
Confidence 99864
No 28
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.06 E-value=2.5e-09 Score=99.85 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 26 QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 26 a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
+.++.+.+.+++++++|+++.+.||++|++||||.+|++|+++| |+++|++|++++
T Consensus 281 ~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~ 336 (474)
T TIGR03813 281 GPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQ 336 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHH
Confidence 46778888899999999999999999999999999999999999 889999998765
No 29
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.06 E-value=7.2e-10 Score=105.70 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 25 FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
.+.++.+.+++|++++.|+.+|++||++|+||+||+.|++|++++ |++.|+.|++++
T Consensus 325 ~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt 381 (541)
T COG0833 325 AASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVT 381 (541)
T ss_pred chHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHH
Confidence 578999999999999999999999999999999999999999999 779999999987
No 30
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.95 E-value=4e-10 Score=105.61 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=66.3
Q ss_pred CChHHHhcChHHHHHHHHH-hcCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSER-VLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~-vlG~~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
+|++++.+++.+.++..++ ..+..+.++++.+..+.+|++|+.+|+.||++|.+|+||+.|+.|++++ |+++|.+|++
T Consensus 262 ~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~kls-k~gVP~~ai~ 340 (462)
T COG1113 262 YPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAIL 340 (462)
T ss_pred ccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHH
Confidence 4666665544444444433 3444578999999999999999999999999999999999999999999 8899999999
Q ss_pred cc
Q psy799 81 FQ 82 (209)
Q Consensus 81 ~~ 82 (209)
++
T Consensus 341 ~s 342 (462)
T COG1113 341 LS 342 (462)
T ss_pred HH
Confidence 87
No 31
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.91 E-value=1.5e-08 Score=94.83 Aligned_cols=64 Identities=25% Similarity=0.424 Sum_probs=55.3
Q ss_pred HHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh--HhhcccCCCCccccchhcc
Q psy799 19 ERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQ--AFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 19 ~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~--~fs~ih~k~~TP~~All~~ 82 (209)
.+.+|. ++.++...++++.+++.++.+++.||++|++||||.+|+ +|+++|+|++||.+|+++.
T Consensus 290 ~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~ 356 (475)
T TIGR03428 290 SAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVI 356 (475)
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHH
Confidence 345564 456666777889999999999999999999999999995 8999999999999998864
No 32
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.90 E-value=2.1e-08 Score=91.61 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 13 VAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 13 vAv~~a~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
+..+.+....|. .+.++.+.+.++++++.+++..+.+|+.|++||||++|+.|+++|+|+++|..|+++.
T Consensus 273 p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~ 343 (466)
T COG0531 273 PLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILT 343 (466)
T ss_pred cHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHH
Confidence 334555666664 4789999999999999999999999999999999999999999999999999999876
No 33
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.83 E-value=1.2e-09 Score=101.86 Aligned_cols=69 Identities=29% Similarity=0.466 Sum_probs=59.9
Q ss_pred HHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 14 AVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 14 Av~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
..+..+...+++ ..++.+++.+|++++.|+.++++||++|+|||||.+|+.+.+.|+|+++|+.|++++
T Consensus 276 ~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~ 345 (478)
T PF00324_consen 276 FVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVS 345 (478)
T ss_pred hhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeee
Confidence 344555555554 689999999999999999999999999999999999977777888999999999887
No 34
>KOG1286|consensus
Probab=98.81 E-value=1.7e-08 Score=97.26 Aligned_cols=55 Identities=25% Similarity=0.370 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 27 FIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 27 ~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
.++++++.+++.+++|+.+|++||.+|+|||||++|++|+++|++ ++|+.|+++.
T Consensus 322 ~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~ 376 (554)
T KOG1286|consen 322 HIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVS 376 (554)
T ss_pred hhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHH
Confidence 499999999999999999999999999999999999999999966 9999999886
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.71 E-value=1.1e-07 Score=89.41 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799 27 FIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 27 ~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~ 82 (209)
.++.+...++++++.|+++++.+|.++.++|||++|++|+++| |+++|.+|++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~ 372 (496)
T PRK15238 318 RITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQ 372 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHH
Confidence 4677888999999999999999999999999999999999999 899999999876
No 36
>KOG1289|consensus
Probab=98.51 E-value=1.5e-07 Score=90.11 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=64.8
Q ss_pred HHHhcCh--HHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCch--hHhhcccCCCCccccch
Q psy799 5 FEMIASP--AVAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML--QAFSFVHVKRLTPAPAV 79 (209)
Q Consensus 5 ~el~~S~--avAv~~a~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP--~~fs~ih~k~~TP~~Al 79 (209)
+.+.+|+ .+.+.+..+.+|. .+..+....+++.|-+-.+.+.++||+.|+-||||-|| ++++++++++++|.+|+
T Consensus 316 ~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv 395 (550)
T KOG1289|consen 316 DAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAV 395 (550)
T ss_pred HHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHH
Confidence 4445544 6777777888887 45566777778888888899999999999999999999 78999999899999999
Q ss_pred hcc
Q psy799 80 LFQ 82 (209)
Q Consensus 80 l~~ 82 (209)
++.
T Consensus 396 ~l~ 398 (550)
T KOG1289|consen 396 LLS 398 (550)
T ss_pred HHH
Confidence 876
No 37
>KOG2082|consensus
Probab=97.74 E-value=8.7e-05 Score=73.78 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCch--hHhhcccCCCCccccchhcc
Q psy799 26 QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML--QAFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 26 a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP--~~fs~ih~k~~TP~~All~~ 82 (209)
.|++.++..+|++|+.+-.+-+++|+++|.|||+.+| +.|++.. +++-|..|++++
T Consensus 496 PwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT 553 (1075)
T KOG2082|consen 496 PWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLT 553 (1075)
T ss_pred ceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHH
Confidence 3788999999999999999999999999999999999 6888766 778999999987
No 38
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=97.60 E-value=0.00014 Score=49.21 Aligned_cols=45 Identities=16% Similarity=0.451 Sum_probs=38.4
Q ss_pred cchhHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHhhhhhh
Q psy799 83 VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQ 132 (209)
Q Consensus 83 vpliiPil~ll~~l~Ll~~~l~~~p~~~~l~gl~~il~Gl~iY~~~v~~~ 132 (209)
+| ++|.+.++++++|+.. -+. .+++...+|+++|+++|+.+.+++
T Consensus 6 vP-~~P~~si~~ni~Lm~~---L~~-~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 6 VP-FLPALSILINIYLMAQ---LSA-LTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred cc-HHHHHHHHHHHHHHHH---hhH-hHHHHHHHHHHHHHHHHHheeeec
Confidence 45 8999999999999995 333 678888999999999999988765
No 39
>KOG1288|consensus
Probab=95.64 E-value=0.074 Score=53.21 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh--HhhcccCCCCccccchhcc
Q psy799 26 QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQ--AFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 26 a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~--~fs~ih~k~~TP~~All~~ 82 (209)
-+++-+++.-+.+.+-.+.++++||++.|+|||..+|- .|++.....+.|+.|+.++
T Consensus 372 p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vt 430 (945)
T KOG1288|consen 372 PPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVT 430 (945)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHH
Confidence 35566666666777888889999999999999999995 5677777789999999886
No 40
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=95.38 E-value=0.34 Score=43.78 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=45.3
Q ss_pred CChHHHhcCh------HHHHHHHHHhcCc-h-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCC
Q psy799 2 DPVFEMIASP------AVAVAFSERVLGP-F-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRL 73 (209)
Q Consensus 2 ls~~el~~S~------avAv~~a~~vlG~-~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~ 73 (209)
+|++|+.++. .......+..+|. + +.++.++..+++.++.+++.++.++. +++.+++.|++++
T Consensus 237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~~~~~~~ 307 (381)
T TIGR00837 237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKFDDSKKG 307 (381)
T ss_pred CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCCcccCC
Confidence 5677776321 2223445555665 3 57899999999999999999888843 4555665554433
Q ss_pred ccccchhcc
Q psy799 74 TPAPAVLFQ 82 (209)
Q Consensus 74 TP~~All~~ 82 (209)
|..+.++.
T Consensus 308 -~~~~~~~~ 315 (381)
T TIGR00837 308 -RFKTGLLT 315 (381)
T ss_pred -Cchhhhhh
Confidence 55555443
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.07 E-value=0.1 Score=48.47 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=47.7
Q ss_pred cChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799 9 ASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF 81 (209)
Q Consensus 9 ~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~ 81 (209)
++.++..+.+++.+|+. +.++.+.+.++|+++.+|.+.+.++ .|+++|+| +|+.+.++
T Consensus 252 ~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~-------------~f~~~~~k--~~y~~~v~ 310 (378)
T TIGR00796 252 NGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE-------------YFHKLVPK--LSYKTWVI 310 (378)
T ss_pred CcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcCC--CCHHHHHH
Confidence 36678889999999997 5789999999999999999988554 57777764 88877765
No 42
>KOG2083|consensus
Probab=78.43 E-value=32 Score=34.36 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh--HhhcccCCCCccccchhcc
Q psy799 26 QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQ--AFSFVHVKRLTPAPAVLFQ 82 (209)
Q Consensus 26 a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~--~fs~ih~k~~TP~~All~~ 82 (209)
+..+..+...+..++..+.+.+.+++++++.+|...|. ++.+=..+++-|..+..++
T Consensus 316 ~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~ 374 (643)
T KOG2083|consen 316 GPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLT 374 (643)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHH
Confidence 34556667777888899999999999999999999995 6677777888999887766
No 43
>PHA02764 hypothetical protein; Provisional
Probab=75.96 E-value=3.7 Score=38.10 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCCchhHhhcccCC
Q psy799 47 GVTRLCYAAGREGHMLQAFSFVHVK 71 (209)
Q Consensus 47 ~~SRi~~a~ARdG~LP~~fs~ih~k 71 (209)
-+||+.++||-|..+|+.|+|++++
T Consensus 258 ~~srli~~~~fd~~lpe~f~k~~~n 282 (399)
T PHA02764 258 IQSRLIQTMSFDKVLPEKFSKINPN 282 (399)
T ss_pred hHHHHHHHHHhhhhchHHHhccCCC
Confidence 3799999999999999999999854
No 44
>TIGR00359 cello_pts_IIC phosphotransferase system, cellobiose specific, IIC component. The family consists of the cellobiose specific form of the phosphotransferase system (PTS), IIC component.
Probab=53.01 E-value=71 Score=30.16 Aligned_cols=95 Identities=14% Similarity=0.293 Sum_probs=57.0
Q ss_pred HHHHHHHH-HHhHHHHHHHHHhcCCchhHhhcccCC--CCcccc--chhcccc-hhHHHHHHHHHHHHHhhcc------c
Q psy799 37 TFGCALSV-QFGVTRLCYAAGREGHMLQAFSFVHVK--RLTPAP--AVLFQVP-LVIPIFVLIMSIVLSLTPI------V 104 (209)
Q Consensus 37 ~~gsln~~-i~~~SRi~~a~ARdG~LP~~fs~ih~k--~~TP~~--All~~vp-liiPil~ll~~l~Ll~~~l------~ 104 (209)
+++-+... +++-+|-...+||-+..|..|. +|.- ++.|.. -+++ .| ++.|.+..+.+-+.+..-+ +
T Consensus 293 tL~L~ia~l~~sKs~~~k~igk~sl~P~iFN-INEPliFGlPIvlNPil~-IPFil~P~v~~~iay~a~~~g~vp~~~~~ 370 (423)
T TIGR00359 293 TLALVLTMFIRSRSKQMKQVGKLALAPGIFN-INEPIIFGLPIVMNPILI-IPFVLAPLVTITVTYIAMSTGLVPPPVGI 370 (423)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhcccccC-CCccHHhcChHHhccHHH-HHHHHHHHHHHHHHHHHHHccCCCccccc
Confidence 33433443 6678889999999999999995 5633 677742 2332 44 3556665555555443211 2
Q ss_pred cCch----------------hHHHHHHHHHHHHHHHHHhhhhhhc
Q psy799 105 TKPA----------------PQFLIAVAFIVLGILVYIPFVYYQY 133 (209)
Q Consensus 105 ~~p~----------------~~~l~gl~~il~Gl~iY~~~v~~~~ 133 (209)
.-|+ ...++.++.++++..+|+.|.+...
T Consensus 371 ~vpwttP~~l~~~l~Tgg~~~a~il~~v~lvi~~lIY~PFvk~~d 415 (423)
T TIGR00359 371 AVPWTMPPGISGFFATGGSVSGAVMQLINLLISFVIYLPFFKAWD 415 (423)
T ss_pred cCCCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 2334445567788899998876543
No 45
>TIGR00410 lacE PTS system, lactose/cellobiose family IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family of proteins consists of both the cellobiose specific and the lactose specific forms of the phosphotransferase system (PTS) IIC component. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to the substrate. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=53.01 E-value=71 Score=30.16 Aligned_cols=95 Identities=14% Similarity=0.293 Sum_probs=57.0
Q ss_pred HHHHHHHH-HHhHHHHHHHHHhcCCchhHhhcccCC--CCcccc--chhcccc-hhHHHHHHHHHHHHHhhcc------c
Q psy799 37 TFGCALSV-QFGVTRLCYAAGREGHMLQAFSFVHVK--RLTPAP--AVLFQVP-LVIPIFVLIMSIVLSLTPI------V 104 (209)
Q Consensus 37 ~~gsln~~-i~~~SRi~~a~ARdG~LP~~fs~ih~k--~~TP~~--All~~vp-liiPil~ll~~l~Ll~~~l------~ 104 (209)
+++-+... +++-+|-...+||-+..|..|. +|.- ++.|.. -+++ .| ++.|.+..+.+-+.+..-+ +
T Consensus 293 tL~L~ia~l~~sKs~~~k~igk~sl~P~iFN-INEPliFGlPIvlNPil~-IPFil~P~v~~~iay~a~~~g~vp~~~~~ 370 (423)
T TIGR00410 293 TLALVLTMFIRSRSKQMKQVGKLALAPGIFN-INEPIIFGLPIVMNPILI-IPFVLAPLVTITVTYIAMSTGLVPPPVGI 370 (423)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhcccccC-CCccHHhcChHHhccHHH-HHHHHHHHHHHHHHHHHHHccCCCccccc
Confidence 33433443 6678889999999999999995 5633 677742 2332 44 3556665555555443211 2
Q ss_pred cCch----------------hHHHHHHHHHHHHHHHHHhhhhhhc
Q psy799 105 TKPA----------------PQFLIAVAFIVLGILVYIPFVYYQY 133 (209)
Q Consensus 105 ~~p~----------------~~~l~gl~~il~Gl~iY~~~v~~~~ 133 (209)
.-|+ ...++.++.++++..+|+.|.+...
T Consensus 371 ~vpwttP~~l~~~l~Tgg~~~a~il~~v~lvi~~lIY~PFvk~~d 415 (423)
T TIGR00410 371 AVPWTMPPGISGFFATGGSVSGAVMQLINLLISFVIYLPFFKAWD 415 (423)
T ss_pred cCCCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 2334445567788899998876543
No 46
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=49.37 E-value=93 Score=29.74 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=54.8
Q ss_pred HHHHHHHH-HHhHHHHHHHHHhcCCchhHhhcccCC--CCcccc--chhcccch-hHHHHHHHHHHHHHhhccc-----c
Q psy799 37 TFGCALSV-QFGVTRLCYAAGREGHMLQAFSFVHVK--RLTPAP--AVLFQVPL-VIPIFVLIMSIVLSLTPIV-----T 105 (209)
Q Consensus 37 ~~gsln~~-i~~~SRi~~a~ARdG~LP~~fs~ih~k--~~TP~~--All~~vpl-iiPil~ll~~l~Ll~~~l~-----~ 105 (209)
+++-+... +++-||-...+||-+..|..|. +|.- ++.|.. -+++ .|. +.|.+..+++-+....-++ .
T Consensus 310 tL~L~iaill~sKs~~~k~lgk~sl~P~lFN-INEPiiFGlPIvlNPil~-IPFil~p~v~~~iay~a~~~G~vp~~~~~ 387 (452)
T PRK10297 310 TLGLIIAIFIASRRADYRQVAKLALPSGIFQ-INEPILFGLPIIMNPVMF-IPFILVQPILAAITLVAYYLGIIPPITNI 387 (452)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHccccccc-CCccHHhccHHHHchHHH-HHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence 44444443 6788999999999999999987 5532 677742 2222 442 3455555554444332111 1
Q ss_pred Cch----------------hHHHHHHHHHHHHHHHHHhhhhh
Q psy799 106 KPA----------------PQFLIAVAFIVLGILVYIPFVYY 131 (209)
Q Consensus 106 ~p~----------------~~~l~gl~~il~Gl~iY~~~v~~ 131 (209)
-|+ ...+..++.++++..+|+.+.+.
T Consensus 388 vpwttP~~l~~fl~t~g~~~~~ilq~v~lvi~~lIY~PFvK~ 429 (452)
T PRK10297 388 APWTMPTGLGAFFNTNGSVAALLVALFNLGIATLIYLPFVVV 429 (452)
T ss_pred CCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22344455677888899887754
No 47
>COG1455 CelB Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
Probab=46.30 E-value=1.4e+02 Score=28.62 Aligned_cols=94 Identities=20% Similarity=0.423 Sum_probs=53.0
Q ss_pred HHHHHHH-HHHhHHHHHHHHHhcCCchhHhhcccCC--CCccc--cchhcccc-hhHHHHHHHHHHHHHhhccc-----c
Q psy799 37 TFGCALS-VQFGVTRLCYAAGREGHMLQAFSFVHVK--RLTPA--PAVLFQVP-LVIPIFVLIMSIVLSLTPIV-----T 105 (209)
Q Consensus 37 ~~gsln~-~i~~~SRi~~a~ARdG~LP~~fs~ih~k--~~TP~--~All~~vp-liiPil~ll~~l~Ll~~~l~-----~ 105 (209)
+++-+.. .+++-||-+.+.+|-+..|..|. +|.- ++.|. +.+++ +| ++.|.+...+.-+-+..-++ .
T Consensus 295 Tl~Lviai~~~sksk~~K~vgkls~~P~iFn-INEPilFGlPIVlNPilf-IPFilaP~v~~~i~y~a~~~g~v~~~~v~ 372 (432)
T COG1455 295 TLGLVIAIFLFSKSKQLKAVGKLSLVPGIFN-INEPILFGLPIVLNPILF-IPFILAPLVNVTITYFAIYTGLVPPFTVQ 372 (432)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHhccCceecc-cCcchhcCChHHhchHHH-HHHHHHHHHHHHHHHHHHHhcCCCCeeee
Confidence 4444333 34555689999999999999997 6633 66663 22333 34 24455544444433322111 2
Q ss_pred Cch----------------hHHHHHHHHHHHHHHHHHhhhhhh
Q psy799 106 KPA----------------PQFLIAVAFIVLGILVYIPFVYYQ 132 (209)
Q Consensus 106 ~p~----------------~~~l~gl~~il~Gl~iY~~~v~~~ 132 (209)
-|+ ...+..++.++.+..+|+.+.+..
T Consensus 373 vPWttP~~i~~~laTg~~w~a~vlq~i~l~v~~lIY~PF~kv~ 415 (432)
T COG1455 373 VPWTTPPPLGAFLATGGDWRALVLQLINLVVAVLIYLPFFKVY 415 (432)
T ss_pred cCCCCchHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 233444556777888998876543
No 48
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=43.43 E-value=20 Score=31.26 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q psy799 109 PQFLIAVAFIVLGILVYIPFVYYQYRMP 136 (209)
Q Consensus 109 ~~~l~gl~~il~Gl~iY~~~v~~~~~p~ 136 (209)
...+.|.++++.|+.+|-...++|++||
T Consensus 275 ~~~~~G~~lil~Gv~l~~~~k~~~~~~~ 302 (302)
T TIGR00817 275 PQQVFGTGIAIAGVFLYSRVKAQKPKPK 302 (302)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCcCCC
Confidence 4466788889999988887666666664
No 49
>KOG3879|consensus
Probab=38.70 E-value=28 Score=30.80 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=25.8
Q ss_pred HHHHHHhhhccCC--CC-------CCCCCCCcccccccccccccc
Q psy799 142 TYFIQVLLKVVPP--DQ-------TDPDNSDTESNGVSLSVKHSS 177 (209)
Q Consensus 142 t~~~Q~l~~v~~~--~~-------~~~~~~~~~~~~~~~~~~~~~ 177 (209)
.-+||-|++..|- |. +.++|+++|+|+++++.|.++
T Consensus 193 k~fcqflle~~pflreygnisy~th~~d~e~~ee~~~~~~~~iaa 237 (267)
T KOG3879|consen 193 KDFCQFLLEIFPFLREYGNISYDTHHEDNEPEEETEVPEEPKIAA 237 (267)
T ss_pred chHHHHHHHHCHHHHHhcCcceecccccCCCCcccCCCCCcchhH
Confidence 3478888888772 21 234688899999999877665
No 50
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=37.07 E-value=70 Score=24.91 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHhhhhh
Q psy799 86 VIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYY 131 (209)
Q Consensus 86 iiPil~ll~~l~Ll~~~l~~~p~~~~l~gl~~il~Gl~iY~~~v~~ 131 (209)
.+|++.+++.+++.....-.+ +.+++..+.|+.+||+..|+
T Consensus 76 ~lPll~li~g~~l~~~~~~~e-----~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 76 LLPLLALIAGAVLGSYLGGSE-----LWAILGGLLGLALGFLILRL 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 688888888777665322222 23344444555555554443
No 51
>PRK09592 celD cellobiose phosphotransferase system IIC component; Reviewed
Probab=35.51 E-value=2e+02 Score=27.32 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=52.3
Q ss_pred HHhHHHHHHHHHhcCCchhHhhcccCC--CCccccc--hhcccc-hhHHHHHHHHHHHHHhhcccc-----Cc-------
Q psy799 45 QFGVTRLCYAAGREGHMLQAFSFVHVK--RLTPAPA--VLFQVP-LVIPIFVLIMSIVLSLTPIVT-----KP------- 107 (209)
Q Consensus 45 i~~~SRi~~a~ARdG~LP~~fs~ih~k--~~TP~~A--ll~~vp-liiPil~ll~~l~Ll~~~l~~-----~p------- 107 (209)
+.+-+|-...+||-..+|..|+ +|.- ++.|..= +++ .| +..|++..+++.+....-++. .|
T Consensus 326 l~sKs~~~k~lak~alip~lFn-InEPiifGlPivlNPi~~-iPfil~pi~~~~~~~~a~~~glv~~~~~~vpwttP~~l 403 (449)
T PRK09592 326 FAAKSEQLKALGKASIVPAIFN-INEPLIFGLPIVYNPYLA-IPFILAPMVSATVAYVAISLHFVKPIIAQVPWPTPVGL 403 (449)
T ss_pred HHhcCHHHHHHHHHHHhhHhhC-CCchHHHcchHhhchHHH-HhHHHHHHHHHHHHHHHHHcCCCCceeecCCCCCcHHH
Confidence 6678888999999999999995 6633 5666432 111 33 244555555554444321111 11
Q ss_pred --------hhHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy799 108 --------APQFLIAVAFIVLGILVYIPFVYYQYR 134 (209)
Q Consensus 108 --------~~~~l~gl~~il~Gl~iY~~~v~~~~~ 134 (209)
+...+..++.++++..+|+.|.+...|
T Consensus 404 ~~~l~tg~~~~~il~~v~l~i~~~IY~PF~k~~dk 438 (449)
T PRK09592 404 GAFIGTADWRAAVLALVCAIVAFLVWFPFIKHYDN 438 (449)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444556678888899988765433
No 52
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.00 E-value=3.7e+02 Score=24.58 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=55.8
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHhcCCchh----HhhcccCCCCccccchhcccchhHHHHHH
Q psy799 19 ERVLGPFQFIVPLGVVLATFGCALSVQFGV--TRLCYAAGREGHMLQ----AFSFVHVKRLTPAPAVLFQVPLVIPIFVL 92 (209)
Q Consensus 19 ~~vlG~~a~iI~l~v~lS~~gsln~~i~~~--SRi~~a~ARdG~LP~----~fs~ih~k~~TP~~All~~vpliiPil~l 92 (209)
.++|..-+-.+.+++.++++-+.|.+.... =|...+.-+.|.=|+ .-++...+++| .+-+|.+|+
T Consensus 168 ~q~FSgRaa~i~vGa~lgTiM~~NV~fvI~P~Qkkvv~~~~ag~~~dp~~g~~aklrS~hN~---------ylTlPvLf~ 238 (300)
T PF06181_consen 168 TQVFSGRAAFIHVGAWLGTIMAANVFFVIWPNQKKVVAAVKAGEEPDPAAGKRAKLRSRHNN---------YLTLPVLFL 238 (300)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhHheeecCCcHHHHhhhhcCCCCCchhHHHHHHHhhhcc---------eeHHHHHHH
Confidence 344544345677888888777777765443 366666777776653 22222223333 135788777
Q ss_pred HHHHHHHhhccccCchhHHHHHHHHHHHHHHHH
Q psy799 93 IMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVY 125 (209)
Q Consensus 93 l~~l~Ll~~~l~~~p~~~~l~gl~~il~Gl~iY 125 (209)
+.+- =....++.+ ..+++..++++.|..+=
T Consensus 239 MiSn--Hyp~~y~~~-~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 239 MISN--HYPMTYGHP-YNWLILALIMLAGALIR 268 (300)
T ss_pred HHhc--cCccccccc-hhHHHHHHHHHHHHHHH
Confidence 6432 122345666 67777777788887763
No 53
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=33.82 E-value=3.9e+02 Score=24.75 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy799 26 QFIVPLGVVLATFGCALSVQFGVTRLCY 53 (209)
Q Consensus 26 a~iI~l~v~lS~~gsln~~i~~~SRi~~ 53 (209)
..+.+++..++..++..|..++..+.+.
T Consensus 275 ~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 302 (394)
T PF03222_consen 275 SILGSIFAFFAIATSFLGVYLGLFDFLA 302 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888899999998888777654
No 54
>KOG2632|consensus
Probab=32.50 E-value=3.7e+02 Score=24.08 Aligned_cols=80 Identities=28% Similarity=0.378 Sum_probs=50.5
Q ss_pred HHhcCchhhHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHhcCCchhHhhcccC-CCCccccchh-cc---cch-hHH
Q psy799 19 ERVLGPFQFIVPLGVVLATFGCALSVQFGV----TRLCYAAGREGHMLQAFSFVHV-KRLTPAPAVL-FQ---VPL-VIP 88 (209)
Q Consensus 19 ~~vlG~~a~iI~l~v~lS~~gsln~~i~~~----SRi~~a~ARdG~LP~~fs~ih~-k~~TP~~All-~~---vpl-iiP 88 (209)
++..|....+..+.+.+.++..+.-.+... ++..++..--|.-|-.|+++.. .-+.|..... +. +|. ..|
T Consensus 84 E~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~P 163 (258)
T KOG2632|consen 84 ERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAP 163 (258)
T ss_pred HhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHH
Confidence 666775556666677777777776666665 5555555557899988888776 4566666632 22 564 456
Q ss_pred HHHHHHHHHH
Q psy799 89 IFVLIMSIVL 98 (209)
Q Consensus 89 il~ll~~l~L 98 (209)
++.++..-++
T Consensus 164 w~lLi~~~~l 173 (258)
T KOG2632|consen 164 WALLIATQIL 173 (258)
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 55
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=31.38 E-value=1.3e+02 Score=24.39 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHh
Q psy799 86 VIPIFVLIMSIVLSL 100 (209)
Q Consensus 86 iiPil~ll~~l~Ll~ 100 (209)
.+|++++++...+.-
T Consensus 83 llPLl~li~ga~l~~ 97 (154)
T PRK10862 83 MTPLVGLFLGAALFQ 97 (154)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888887766553
No 56
>KOG0569|consensus
Probab=30.34 E-value=2.6e+02 Score=27.10 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=49.8
Q ss_pred HHHhHHHHHHHHH---hcCCchhHhhcccCCCCccccchhcccchhHHHHHHHHHHHH---HhhccccCchhHHHHHHH-
Q psy799 44 VQFGVTRLCYAAG---REGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVL---SLTPIVTKPAPQFLIAVA- 116 (209)
Q Consensus 44 ~i~~~SRi~~a~A---RdG~LP~~fs~ih~k~~TP~~All~~vpliiPil~ll~~l~L---l~~~l~~~p~~~~l~gl~- 116 (209)
.++..+|++..++ ..+..|-+++.+.|++.-=..+. ...+...+.++.- -.-.+..++ ..+-+.++
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~------~~~~~~~~g~ll~~~~~l~~ilGt~-~~W~~l~~~ 189 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT------LLQIGVVIGILLGQVLGLPSLLGTE-DLWPYLLAF 189 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH------HHHHHHHHHHHHHHHHccHHhcCCC-cchHHHHHH
Confidence 3567788875543 56788989999888732211111 1122222222211 111233333 22222222
Q ss_pred HHHHHHHHHHhhhhhhcCCcchh-------HHHHHHHHhhhc
Q psy799 117 FIVLGILVYIPFVYYQYRMPYLD-------NITYFIQVLLKV 151 (209)
Q Consensus 117 ~il~Gl~iY~~~v~~~~~p~~~~-------~~t~~~Q~l~~v 151 (209)
-.+.+++.+....+....|||+- +-.+-+|++-..
T Consensus 190 ~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~ 231 (485)
T KOG0569|consen 190 PLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGK 231 (485)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCC
Confidence 23445555555556667788872 255567776443
No 57
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=28.63 E-value=1.1e+02 Score=26.25 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhhhhcCCc
Q psy799 115 VAFIVLGILVYIPFVYYQYRMP 136 (209)
Q Consensus 115 l~~il~Gl~iY~~~v~~~~~p~ 136 (209)
++++++|..+|+++-|+.++++
T Consensus 112 lLla~~~~~~Y~~~~Rrs~~~~ 133 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRRSWSKK 133 (202)
T ss_pred HHHHHHHHHHHHhhhhccCCcc
Confidence 4556667778888766554543
No 58
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=28.62 E-value=1.2e+02 Score=24.72 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhcCCcchhH
Q psy799 109 PQFLIAVAFIVLGILVYIPFVYYQYRMPYLDN 140 (209)
Q Consensus 109 ~~~l~gl~~il~Gl~iY~~~v~~~~~p~~~~~ 140 (209)
.....|++.-+.++..+++..++++.|+|.++
T Consensus 54 ~~f~lgL~~g~Pall~~~l~~~R~~~~~~~~~ 85 (149)
T PF11143_consen 54 SDFYLGLAAGLPALLLMLLSGRRHRSPRWLNR 85 (149)
T ss_pred hHHHHHHHHhHHHHHHHHHHccCCCCchHHHH
Confidence 45566666666677777888888888987764
No 59
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=26.53 E-value=5.8e+02 Score=24.49 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Q psy799 26 QFIVPLGVVLATFGCALSVQFGVTRLCYAAGRE 58 (209)
Q Consensus 26 a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARd 58 (209)
+.+.++...++..++..|..++...-+..+-++
T Consensus 316 ~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 316 EYAASIIALVAIFKSFFGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888777766666543
No 60
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=26.43 E-value=1.5e+02 Score=25.87 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHhhhhhhcCCc
Q psy799 86 VIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMP 136 (209)
Q Consensus 86 iiPil~ll~~l~Ll~~~l~~~p~~~~l~gl~~il~Gl~iY~~~v~~~~~p~ 136 (209)
..|++..+.+.+++. +.+....+.|.++++.|+.+-....++|++||
T Consensus 250 l~Pv~a~~~~~l~lg----E~~~~~~~iG~~lI~~gv~l~~~~~~~~~~~~ 296 (299)
T PRK11453 250 LVPVVGLASAALLLD----ERLTGLQFLGAVLIMAGLYINVFGLRWRKAVK 296 (299)
T ss_pred HHHHHHHHHHHHHhC----CCccHHHHHHHHHHHHHHHHHhcchhhhcccc
Confidence 567777776666555 34445567787777777754322333455554
No 61
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.84 E-value=78 Score=25.06 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=4.9
Q ss_pred HHHHHhhhhhhc
Q psy799 122 ILVYIPFVYYQY 133 (209)
Q Consensus 122 l~iY~~~v~~~~ 133 (209)
++.|++.+++|+
T Consensus 83 li~y~irR~~Kk 94 (122)
T PF01102_consen 83 LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHS--
T ss_pred HHHHHHHHHhcc
Confidence 445555444433
No 62
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=24.57 E-value=3.8e+02 Score=23.61 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=10.3
Q ss_pred hHhhcccCCCCc
Q psy799 63 QAFSFVHVKRLT 74 (209)
Q Consensus 63 ~~fs~ih~k~~T 74 (209)
+..+++|+|.+|
T Consensus 133 rk~sr~HpRCGT 144 (236)
T PF07136_consen 133 RKYSRLHPRCGT 144 (236)
T ss_pred HhcCCcCCCcch
Confidence 578899999988
No 63
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=24.36 E-value=5.8e+02 Score=23.72 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=32.2
Q ss_pred CChHHHhc---ChHHHH-HHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy799 2 DPVFEMIA---SPAVAV-AFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGR 57 (209)
Q Consensus 2 ls~~el~~---S~avAv-~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~AR 57 (209)
+|++|+.+ .+.... .+++..-++. +.+.++...++..++..|..++...-+-.+-+
T Consensus 252 l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 252 LSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred CCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 57777643 221122 2333333343 66777777777777777777776666555443
No 64
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=23.87 E-value=2.5e+02 Score=26.80 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy799 13 VAVAFSERVLGPFQ-FIVPLGVVLATFGCALSVQFGVTRLCYA 54 (209)
Q Consensus 13 vAv~~a~~vlG~~a-~iI~l~v~lS~~gsln~~i~~~SRi~~a 54 (209)
+-...+++.+|+.+ .++.+.+.++|+.+..|.+-+.++.+..
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~ 304 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSE 304 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999975 7899999999999999999988886654
No 65
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=23.48 E-value=6.3e+02 Score=24.29 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCchh-hHHHHHHHHHHHHHHHHHHHhHHHH
Q psy799 13 VAVAFSERVLGPFQ-FIVPLGVVLATFGCALSVQFGVTRL 51 (209)
Q Consensus 13 vAv~~a~~vlG~~a-~iI~l~v~lS~~gsln~~i~~~SRi 51 (209)
.-....+..||+.+ .+..+.+.++|+.+..|.+-+.+..
T Consensus 264 IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef 303 (431)
T COG1114 264 ILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF 303 (431)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999965 6789999999999999988887764
No 66
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=23.12 E-value=4.7e+02 Score=22.16 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy799 25 FQFIVPLGVVLATFGCALSVQFGVTRLCY 53 (209)
Q Consensus 25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~ 53 (209)
...++|....++.+-......+.+.|++-
T Consensus 157 ~~~~~P~~~~i~~~~~~~~~~~l~~~il~ 185 (290)
T PF09991_consen 157 IKRLFPALLIISALLMSLINYYLARRILR 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677877777766666666666666553
No 67
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=21.66 E-value=2.6e+02 Score=23.03 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHhhccccCc
Q psy799 86 VIPIFVLIMSIVLSLTPIVTKP 107 (209)
Q Consensus 86 iiPil~ll~~l~Ll~~~l~~~p 107 (209)
++|.++++++.++.-..+..++
T Consensus 83 i~PL~~l~v~~~La~~L~~~e~ 104 (150)
T COG3086 83 IFPLVGLFLGAILAQYLFFSEL 104 (150)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH
Confidence 7899999998888555444444
No 68
>TIGR00394 lac_pts_IIC phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=21.62 E-value=5.6e+02 Score=24.14 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=50.5
Q ss_pred HHHhHHHHHHHHHhcCCchhHhhcccCC--CCccccc--hhcccc-hhHHHHHHHH-HHHHHhh---c-cccCch-----
Q psy799 44 VQFGVTRLCYAAGREGHMLQAFSFVHVK--RLTPAPA--VLFQVP-LVIPIFVLIM-SIVLSLT---P-IVTKPA----- 108 (209)
Q Consensus 44 ~i~~~SRi~~a~ARdG~LP~~fs~ih~k--~~TP~~A--ll~~vp-liiPil~ll~-~l~Ll~~---~-l~~~p~----- 108 (209)
.+.+-++-...+||-...|..| .+|.- ++.|..- +++ .| ++.|++..+. +.+.... + .+.-|+
T Consensus 290 ~l~sKsk~~k~l~k~sliP~lF-nInEP~iFGlPIvlNPil~-IPFil~piv~~~i~~y~~~~~g~~~~~~~vpwttP~~ 367 (412)
T TIGR00394 290 MWACKSKRNKAIGRASVVPTFF-GVNEPILFGAPIVLNPVFF-IPFILAPIVNVWIFKFFVSVLGMNSFSANLPWTTPGP 367 (412)
T ss_pred HHHhcCHHHHHHHHHHHhhhhc-CCCchHHhCchHhhchHHH-HhHHHHHHHHHHHHHHHHHHcCCCceeeeCCCCCCHH
Confidence 3556788899999999999999 46633 6777532 222 34 2455555544 2332211 1 111111
Q ss_pred -----------hHHHHHHHHHHHHHHHHHhhhhhhc
Q psy799 109 -----------PQFLIAVAFIVLGILVYIPFVYYQY 133 (209)
Q Consensus 109 -----------~~~l~gl~~il~Gl~iY~~~v~~~~ 133 (209)
...+..++.++.+..+|+.|.+...
T Consensus 368 l~~~l~Tgg~~~~~il~~v~l~i~~~IY~PF~K~~d 403 (412)
T TIGR00394 368 IGIVLGTGFAVLSFVLALLLIVVDTIIYYPFVKVYD 403 (412)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445667788889988876543
Done!