Query psy799
Match_columns 209
No_of_seqs 211 out of 1565
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 23:58:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 1.9E-15 6.5E-20 135.5 11.5 127 2-133 250-432 (445)
2 4djk_A Probable glutamate/gamm 99.3 1.3E-11 4.4E-16 112.6 10.2 80 2-82 260-345 (511)
3 3gia_A Uncharacterized protein 99.3 1.8E-11 6.1E-16 109.8 10.1 79 2-82 247-327 (444)
4 2ks1_B Epidermal growth factor 12.4 1.8E+02 0.0063 18.0 2.9 10 122-131 29-38 (44)
5 2l2t_A Receptor tyrosine-prote 11.8 1.9E+02 0.0065 18.0 2.8 10 122-131 28-37 (44)
6 2qi9_A Vitamin B12 import syst 9.8 1.6E+02 0.0054 25.4 2.6 45 86-131 275-323 (326)
7 3q1c_A LEE-encoded effector ES 9.7 1.5E+02 0.0053 25.8 2.4 58 134-198 26-84 (360)
8 4g1u_A Hemin transport system 9.5 1.6E+02 0.0056 25.9 2.6 46 85-131 301-350 (357)
9 2nq2_A Hypothetical ABC transp 8.9 1.5E+02 0.0052 25.7 2.2 46 86-132 282-330 (337)
10 4emt_A Transmembrane protein 1 6.6 1.6E+02 0.0055 23.9 1.1 24 174-198 88-111 (188)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.62 E-value=1.9e-15 Score=135.54 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=102.6
Q ss_pred CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799 2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL 80 (209)
Q Consensus 2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All 80 (209)
+|++++.+++.+..+.+++.+|++ +.++.+++.++++++.|+.+++.+|++|++||||++|++|+++| |+++|..|++
T Consensus 250 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~ 328 (445)
T 3l1l_A 250 IPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLI 328 (445)
T ss_dssp SCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHH
T ss_pred CCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHH
Confidence 456677666667778888888886 68899999999999999999999999999999999999999999 6799999988
Q ss_pred cc------------------------------------------------c-----c--hhHHHHHHHHHHHHHhhcccc
Q psy799 81 FQ------------------------------------------------V-----P--LVIPIFVLIMSIVLSLTPIVT 105 (209)
Q Consensus 81 ~~------------------------------------------------v-----p--liiPil~ll~~l~Ll~~~l~~ 105 (209)
++ - | .+++++.++.|++++.. .
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~ 405 (445)
T 3l1l_A 329 IVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVG---S 405 (445)
T ss_dssp HHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSGGGCTTTHHHHHHHHHHHHHHHHH---S
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhHHHHHHHHHHHHHHHHH---c
Confidence 76 1 1 25566666666666543 4
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhhhhhc
Q psy799 106 KPAPQFLIAVAFIVLGILVYIPFVYYQY 133 (209)
Q Consensus 106 ~p~~~~l~gl~~il~Gl~iY~~~v~~~~ 133 (209)
++ ...++++++++.|+++|+...++++
T Consensus 406 ~~-~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 406 GA-KEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp CH-HHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55 6788899999999999988665543
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.27 E-value=1.3e-11 Score=112.61 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=62.1
Q ss_pred CChHHHhcChHHHHHHH--HHhcC---ch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCcc
Q psy799 2 DPVFEMIASPAVAVAFS--ERVLG---PF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTP 75 (209)
Q Consensus 2 ls~~el~~S~avAv~~a--~~vlG---~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP 75 (209)
+|.+++..++..+..+. ...+| ++ ..++.+.+.++++++.|+.+++.||++|++||||++|++|+++| |+++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P 338 (511)
T 4djk_A 260 IPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVP 338 (511)
T ss_dssp SCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCC
T ss_pred cCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcC-CCCCc
Confidence 34555554444433332 22344 33 57889999999999999999999999999999999999999999 57999
Q ss_pred ccchhcc
Q psy799 76 APAVLFQ 82 (209)
Q Consensus 76 ~~All~~ 82 (209)
.+|++++
T Consensus 339 ~~ai~~~ 345 (511)
T 4djk_A 339 VTLVISQ 345 (511)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.26 E-value=1.8e-11 Score=109.79 Aligned_cols=79 Identities=13% Similarity=0.302 Sum_probs=64.9
Q ss_pred CChHHHhcCh-HHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccch
Q psy799 2 DPVFEMIASP-AVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAV 79 (209)
Q Consensus 2 ls~~el~~S~-avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~Al 79 (209)
++++++.+++ .+....++..+|++ ..++.+++.++++++.|+.+++.||++|++||||++|++|++.| + ++|.+|+
T Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~-~-~~P~~a~ 324 (444)
T 3gia_A 247 LPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKV-W-FKSTEGL 324 (444)
T ss_dssp SCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTS-C-CSCTHHH
T ss_pred CCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCC-C-CCCcHHH
Confidence 4677776533 33445566777775 46899999999999999999999999999999999999999987 3 5799998
Q ss_pred hcc
Q psy799 80 LFQ 82 (209)
Q Consensus 80 l~~ 82 (209)
+++
T Consensus 325 ~~~ 327 (444)
T 3gia_A 325 YIT 327 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.37 E-value=1.8e+02 Score=17.97 Aligned_cols=10 Identities=0% Similarity=-0.247 Sum_probs=3.9
Q ss_pred HHHHHhhhhh
Q psy799 122 ILVYIPFVYY 131 (209)
Q Consensus 122 l~iY~~~v~~ 131 (209)
+.++|++.++
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3344443333
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.78 E-value=1.9e+02 Score=17.97 Aligned_cols=10 Identities=0% Similarity=-0.210 Sum_probs=3.8
Q ss_pred HHHHHhhhhh
Q psy799 122 ILVYIPFVYY 131 (209)
Q Consensus 122 l~iY~~~v~~ 131 (209)
+.+++++.++
T Consensus 28 ~~~~~~~RRR 37 (44)
T 2l2t_A 28 LTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334443333
No 6
>2qi9_A Vitamin B12 import system permease protein BTUC; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 4dbl_A 1l7v_A*
Probab=9.76 E-value=1.6e+02 Score=25.42 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHhhcccc----CchhHHHHHHHHHHHHHHHHHhhhhh
Q psy799 86 VIPIFVLIMSIVLSLTPIVT----KPAPQFLIAVAFIVLGILVYIPFVYY 131 (209)
Q Consensus 86 iiPil~ll~~l~Ll~~~l~~----~p~~~~l~gl~~il~Gl~iY~~~v~~ 131 (209)
.+|.-.++..++++..-... .| .+.=.|....++|.|+|.+..++
T Consensus 275 llp~s~l~Ga~~ll~ad~lar~l~~p-~elPvG~~taliG~p~fl~ll~r 323 (326)
T 2qi9_A 275 LLPGCALAGASALLLADIVARLALAA-AELPIGVVTATLGAPVFIWLLLK 323 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSTT-CCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc-cCCCHHHHHHHHHHHHHHHHHHh
Confidence 56776777766666542211 23 23336777788899877655443
No 7
>3q1c_A LEE-encoded effector ESPG; VIRA fold, virulence factor, PAK recruitment and activation, activated kinase, signaling protein; 1.60A {Escherichia coli O127} PDB: 4fma_A 4fmd_A* 4fme_A* 4fmc_A* 3pcr_A* 3pcs_A
Probab=9.71 E-value=1.5e+02 Score=25.83 Aligned_cols=58 Identities=28% Similarity=0.271 Sum_probs=31.0
Q ss_pred CCcchhHHHHHHHHhhhccCCCCCCCCCCCcccccccccccccchhh-hcCccceeeeeEeeeecc
Q psy799 134 RMPYLDNITYFIQVLLKVVPPDQTDPDNSDTESNGVSLSVKHSSDDV-QANGVEKHALLEVEVRTP 198 (209)
Q Consensus 134 ~p~~~~~~t~~~Q~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 198 (209)
.|++-..-....|.++.+..+-.... |++-+-++ --+|.. -.=-+.|+.|.|.||+||
T Consensus 26 ~p~yt~~Er~~~~~LL~vL~PvlP~~-NE~Grv~A------~fsDGSsLrIsVtkSeliE~~I~tp 84 (360)
T 3q1c_A 26 NPTYSRSERQSFQELLTVLEPVYPLP-NELGRVSA------RFSDGSSLRISVTNSESIEAEIRTP 84 (360)
T ss_dssp CTTCCHHHHHHHHHHHTTCEEECCCT-TEEEEEEE------ECTTSCEEEEEEETTCCEEEEEECT
T ss_pred CcccChHHHHHHHHHHHhcCCCCCCc-cccchhhh------hccCCceEEEEeeccceEEEEEEcc
Confidence 46665555566888888764322211 11111000 012222 122467889999999998
No 8
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=9.51 E-value=1.6e+02 Score=25.85 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHhhcccc----CchhHHHHHHHHHHHHHHHHHhhhhh
Q psy799 85 LVIPIFVLIMSIVLSLTPIVT----KPAPQFLIAVAFIVLGILVYIPFVYY 131 (209)
Q Consensus 85 liiPil~ll~~l~Ll~~~l~~----~p~~~~l~gl~~il~Gl~iY~~~v~~ 131 (209)
..+|.-.++..++++..-+.. .| .+.=.|....++|.|++.+..++
T Consensus 301 ~llp~Sal~Ga~lll~aD~lar~l~~p-~elPvGivtaliGaP~fl~Ll~r 350 (357)
T 4g1u_A 301 WLLPGAALGGACLLLTADTLARTLVAP-AEMPVGLLTSLLGGPYFLWLILR 350 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSTT-CCCCHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHHh
Confidence 367777777777777643222 23 23336777788899876554443
No 9
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=8.95 E-value=1.5e+02 Score=25.67 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhhccccC---chhHHHHHHHHHHHHHHHHHhhhhhh
Q psy799 86 VIPIFVLIMSIVLSLTPIVTK---PAPQFLIAVAFIVLGILVYIPFVYYQ 132 (209)
Q Consensus 86 iiPil~ll~~l~Ll~~~l~~~---p~~~~l~gl~~il~Gl~iY~~~v~~~ 132 (209)
.+|.-.++..++++..-.... | .+.=.|....++|.|+|.+..+++
T Consensus 282 llp~s~l~Ga~~ll~ad~lar~~~p-~elPvG~~taliG~p~fl~ll~r~ 330 (337)
T 2nq2_A 282 LLPCTMLVGATYMLLVDNVARSLSD-AEIPISILTALIGAPLFGVLVYKL 330 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCS-SCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666554322111 3 333467777888998876655443
No 10
>4emt_A Transmembrane protein 173; alpha/beta fold, innate immune sensor, C-DI-GMP, C-DI-AMP, M protein; HET: C2E; 1.50A {Homo sapiens} PDB: 4emu_A
Probab=6.64 E-value=1.6e+02 Score=23.94 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred cccchhhhcCccceeeeeEeeeecc
Q psy799 174 KHSSDDVQANGVEKHALLEVEVRTP 198 (209)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (209)
||+-|+|..||. |..-.-+|-.||
T Consensus 88 knsVY~I~~~~~-~~~~cv~E~ATP 111 (188)
T 4emt_A 88 SNSIYELLENGQ-RAGTCVLEYATP 111 (188)
T ss_dssp CEEEEEEEETTE-EEEEEEEEECTH
T ss_pred ccceeEEecCCC-ceeEEEEecCcH
Done!