Query psy799
Match_columns 209
No_of_seqs 211 out of 1565
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 23:59:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy799.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/799hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 11.5 93 0.0067 20.3 3.3 21 114-134 38-58 (100)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 9.8 1.2E+02 0.0084 16.9 2.7 16 111-126 9-24 (37)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 8.1 1.4E+02 0.01 19.6 3.2 20 115-134 45-64 (107)
4 d1fftb2 f.17.2.1 (B:27-117) Cy 7.9 46 0.0034 21.7 0.4 17 118-134 31-47 (91)
5 d1rh5b_ f.23.28.1 (B:) Preprot 7.6 2E+02 0.014 17.3 3.3 20 110-129 27-46 (56)
6 d1ueba3 b.40.4.5 (A:127-184) E 6.5 57 0.0042 20.0 0.3 22 181-202 17-40 (58)
7 d2uuia1 f.56.1.1 (A:2-147) Leu 5.6 4.4E+02 0.032 18.0 5.1 18 39-56 78-95 (146)
8 d1c99a_ f.17.1.1 (A:) F1F0 ATP 5.2 3.9E+02 0.028 16.8 4.5 37 30-69 14-50 (79)
9 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.1 2.4E+02 0.017 14.2 2.9 14 114-127 8-21 (26)
10 d1ev0a_ d.71.1.1 (A:) Cell div 4.7 1.6E+02 0.011 17.9 1.5 26 173-198 24-52 (58)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.53 E-value=93 Score=20.27 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhhhcC
Q psy799 114 AVAFIVLGILVYIPFVYYQYR 134 (209)
Q Consensus 114 gl~~il~Gl~iY~~~v~~~~~ 134 (209)
.+..+..|+.+|+.+.+++++
T Consensus 38 ~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHhhhhhccC
Confidence 344466788888887776554
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=9.78 E-value=1.2e+02 Score=16.90 Aligned_cols=16 Identities=19% Similarity=0.598 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy799 111 FLIAVAFIVLGILVYI 126 (209)
Q Consensus 111 ~l~gl~~il~Gl~iY~ 126 (209)
.++.+-++..|+++|.
T Consensus 9 ~ly~Fw~FFagLi~YL 24 (37)
T d1eysh2 9 TIWAFWLFFFGLIIYL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455556677777765
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=8.08 E-value=1.4e+02 Score=19.58 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhhcC
Q psy799 115 VAFIVLGILVYIPFVYYQYR 134 (209)
Q Consensus 115 l~~il~Gl~iY~~~v~~~~~ 134 (209)
+..+..|+.+|+.+.+++++
T Consensus 45 I~~~V~~~~~~~~~~~r~~~ 64 (107)
T d3ehbb2 45 VTIFVCLLLLICIVRFNRRA 64 (107)
T ss_dssp HHHHHHHHHHHHHHHSBTTT
T ss_pred HHHHHHHHHHHHhhhhhccC
Confidence 33456678888887766553
No 4
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.93 E-value=46 Score=21.68 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhhhcC
Q psy799 118 IVLGILVYIPFVYYQYR 134 (209)
Q Consensus 118 il~Gl~iY~~~v~~~~~ 134 (209)
...|+.+|+.+++++++
T Consensus 31 ~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 31 PAILMAVGFAWKYRASN 47 (91)
T ss_dssp HHHHHHHTTTTTTTTST
T ss_pred HHHHHHHhhheeeeccC
Confidence 55677788888776554
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.56 E-value=2e+02 Score=17.26 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q psy799 110 QFLIAVAFIVLGILVYIPFV 129 (209)
Q Consensus 110 ~~l~gl~~il~Gl~iY~~~v 129 (209)
....|+++.+.|++-|+++.
T Consensus 27 a~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 27 AKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776643
No 6
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}
Probab=6.47 E-value=57 Score=19.95 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=14.5
Q ss_pred hcCccceeeeeE--eeeecceEee
Q psy799 181 QANGVEKHALLE--VEVRTPIVIN 202 (209)
Q Consensus 181 ~~~~~~~~~~~~--~~~~~~~~~~ 202 (209)
++++..|.|.|| .+++-|..|+
T Consensus 17 Ta~~~~K~a~letG~~i~VP~FI~ 40 (58)
T d1ueba3 17 TVSGGSKPATLETGAVVQVPLFVE 40 (58)
T ss_dssp SSSCSEEEEEETTSCEEEEETTCC
T ss_pred cccCCcceEEEcCCCEEEcCCccc
Confidence 456667777776 5667776664
No 7
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.62 E-value=4.4e+02 Score=18.00 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHHHH
Q psy799 39 GCALSVQFGVTRLCYAAG 56 (209)
Q Consensus 39 gsln~~i~~~SRi~~a~A 56 (209)
..+.|.++..+|++|+-+
T Consensus 78 a~~lG~~~~vgRi~ha~g 95 (146)
T d2uuia1 78 AALCGLVYLFARLRYFQG 95 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467788899999999865
No 8
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=5.17 E-value=3.9e+02 Score=16.79 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhccc
Q psy799 30 PLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVH 69 (209)
Q Consensus 30 ~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih 69 (209)
.+.+.++.+|.-.|.=...+..+-+.||+ |+.-+++.
T Consensus 14 gl~~gl~aiG~giG~G~~~~~ale~~ARq---PE~~~~l~ 50 (79)
T d1c99a_ 14 AVMMGLAAIGAAIGIGILGGKFLEGAARQ---PDLIPLLR 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---chHHHhHH
Confidence 34555788899999999999999999999 65555544
No 9
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.08 E-value=2.4e+02 Score=14.18 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q psy799 114 AVAFIVLGILVYIP 127 (209)
Q Consensus 114 gl~~il~Gl~iY~~ 127 (209)
.+.|+...+.+|++
T Consensus 8 w~fw~ffalli~yl 21 (26)
T d1rzhh2 8 YSFWIFLAGLIYYL 21 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555554
No 10
>d1ev0a_ d.71.1.1 (A:) Cell division protein MinE topological specificity domain {Escherichia coli [TaxId: 562]}
Probab=4.66 E-value=1.6e+02 Score=17.87 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred ccccchhh---hcCccceeeeeEeeeecc
Q psy799 173 VKHSSDDV---QANGVEKHALLEVEVRTP 198 (209)
Q Consensus 173 ~~~~~~~~---~~~~~~~~~~~~~~~~~~ 198 (209)
+++..|+| .++.-..+..||+.|--|
T Consensus 24 V~Id~d~v~V~le~~~~~~svLElnI~lP 52 (58)
T d1ev0a_ 24 VQIDPEMVTVQLEQKDGDISILELNVTLP 52 (58)
T ss_dssp SCCCGGGEEEEEEEETTTEEEEEEEEEEC
T ss_pred EeecHHHeEEEEecCCCCEEEEEEEEEcC
Done!