BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7990
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55935|RS9_DROME 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=2
SV=2
Length = 195
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/44 (90%), Positives = 41/44 (93%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRK 62
VRKQVVNIPSFVVRLDSQKHIDFSL SPFGGG GRVKRKNL+K
Sbjct: 138 VRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKK 181
>sp|P29314|RS9_RAT 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4
Length = 194
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76
VRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 137 VRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|A9L913|RS9_PAPAN 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1
Length = 194
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76
VRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 137 VRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3
Length = 194
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76
VRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 137 VRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3
Length = 194
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76
VRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 137 VRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|A6QLG5|RS9_BOVIN 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1
Length = 194
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 47/58 (81%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76
VRKQVVNIPSF+VRLDSQKHIDFSL SP+GGG GRVKRKN +K A A +E+E+
Sbjct: 137 VRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3
SV=1
Length = 189
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 40/44 (90%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRK 62
VR+QVV++PSF+VRLDSQKHIDFSL SP+GGG GRVKR+ LRK
Sbjct: 136 VRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRK 179
>sp|Q9LXG1|RS91_ARATH 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1
SV=1
Length = 198
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 21 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSAT 68
KQ+VNIPSF+VRLDSQKHIDF+L SPFGGG GRVKR+N + A+ A+
Sbjct: 140 KQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKAS 187
>sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2
SV=1
Length = 197
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 40/48 (83%)
Query: 21 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSAT 68
+Q+VNIPSF+VR++SQKH+DFSL SPFGGG GRVKR+N R A A+
Sbjct: 140 RQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKAS 187
>sp|Q09757|RS9A_SCHPO 40S ribosomal protein S9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9a PE=1 SV=2
Length = 191
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 37/41 (90%)
Query: 21 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLR 61
KQ+VN+PSFVVRLD+QKHIDF+L+SP+GGG GR KRK LR
Sbjct: 138 KQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLR 178
>sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9b PE=1 SV=3
Length = 192
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 37/41 (90%)
Query: 21 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLR 61
KQ+VN+PSFVVRLD+QKHIDF+L+SP+GGG GR KRK LR
Sbjct: 138 KQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLR 178
>sp|P49214|RS9_TOBAC 40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9
PE=3 SV=1
Length = 77
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 36/39 (92%)
Query: 21 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKN 59
+QVVN+PSF+VRLDSQKHIDFSL SPFGGG GRVKRKN
Sbjct: 20 RQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58
>sp|O13516|RS9A_YEAST 40S ribosomal protein S9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9A PE=1 SV=3
Length = 197
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 18 GVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKN-LRKAASS 66
V KQ+VNIPSF+VRLDS+KHIDF+ SPFGG GRV R+N RKA +S
Sbjct: 135 AVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARKAEAS 184
>sp|P05755|RS9B_YEAST 40S ribosomal protein S9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9B PE=1 SV=4
Length = 195
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 18 GVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKN 59
V KQ+VNIPSF+VRLDS+KHIDF+ SPFGG GRV R+N
Sbjct: 135 AVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176
>sp|P52810|RS9_PODAS 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1
Length = 190
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 21 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76
KQ+VN+PSFVVRLDSQKHIDF+L SPFGGG GRV+RK KAA EEDEE
Sbjct: 136 KQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKKA-KAAEGGDGDAEEDEE 190
>sp|P17959|RS9_TRYBB Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3
SV=1
Length = 190
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 18 GVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDE 75
V KQ+V IPSF+VR+ S+ HI F+ SPFG G GRVKR R AA + ++DE
Sbjct: 134 AVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKRVK-RNAAKKGSGGGDDDE 190
>sp|P14132|RS9_DICDI 40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=1
SV=1
Length = 185
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEED 74
V KQ+VN+PSF+VR++SQKH+ + SP GG GR RK A + ++ EE+
Sbjct: 133 VGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGR----RARKMAKNNSSKGEEE 184
>sp|Q25555|RS9_NAEFO 40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1
Length = 186
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 21 KQVVNIPSFVVRLDSQKHIDFSLNSPFG----GGGTGRVKRKNLRKAAS 65
KQ VN+PSF+VR+DS+KHI+ SPF GG GR+ RK L+ S
Sbjct: 140 KQTVNVPSFIVRVDSEKHINM---SPFSALVQGGKPGRMTRKKLKSQKS 185
>sp|O15612|RS9_ENTHI 40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2
SV=2
Length = 185
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 21 KQVVNIPSFVVRLDSQKHIDFSLNSPFGGGG-TGRVKRKN 59
KQVV++PSF+VR++S+ I + N+P GR KRKN
Sbjct: 138 KQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177
>sp|A8N6B4|MKAR_COPC7 Very-long-chain 3-oxoacyl-CoA reductase OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=CC1G_02019 PE=3 SV=1
Length = 339
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 19/73 (26%)
Query: 2 CSALF-----LSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVK 56
C A F ST YW H +V IPS +R HID ++
Sbjct: 280 CGAAFSGRPNTSTPYWSHALLDYAMTLVGIPSLFIRYTHNLHID--------------IR 325
Query: 57 RKNLRKAASSATA 69
R+ LRK A A
Sbjct: 326 RRALRKLEREAKA 338
>sp|Q8SRW6|RS9_ENCCU 40S ribosomal protein S9 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS9 PE=1 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRK 58
++ Q+V++P F+VR D + I+++ S +G G + + K
Sbjct: 141 IKDQIVDVPGFMVRADKEPLIEYNPYSRYGDKGKKKAEAK 180
>sp|Q9Y7Y2|SLU7_SCHPO Pre-mRNA-splicing factor slu7 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=slu7 PE=1 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 12 WEHQGPGVRKQVVNIPSF---------VVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLR 61
WE + G R VV P+ R+ +QKHID S+ + G GT +VK K +
Sbjct: 284 WEAERSGTRVHVVANPTAGELEFRKNKASRMTTQKHIDQSILDRY-GDGTSKVKDKKAK 341
>sp|Q9W5U2|CHIT3_DROME Probable chitinase 3 OS=Drosophila melanogaster GN=Cht3 PE=2 SV=2
Length = 2286
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 7 LSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSP-FGGGGTGRVKR 57
S YW G RK V+ IP + + LN+P +GGG G R
Sbjct: 1631 FSMNYWISMGADRRKLVMGIPLYGQSFSLAETTKHQLNAPTYGGGEAGEATR 1682
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,452,194
Number of Sequences: 539616
Number of extensions: 1086030
Number of successful extensions: 1880
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1857
Number of HSP's gapped (non-prelim): 26
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)