Query psy7990
Match_columns 76
No_of_seqs 125 out of 661
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 23:59:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_C 40S ribosomal protein S 99.9 9.1E-28 3.1E-32 173.1 1.5 76 1-76 120-195 (195)
2 3u5c_J 40S ribosomal protein S 99.9 6.8E-26 2.3E-30 163.5 3.1 63 1-63 118-180 (197)
3 2xzm_D Ribosomal protein S4 co 99.8 1.5E-20 5.2E-25 133.2 5.1 63 1-63 118-180 (181)
4 2cqj_A BRMS2, U3 small nucleol 99.6 2.8E-16 9.6E-21 96.4 2.5 51 1-51 19-69 (71)
5 3j20_D 30S ribosomal protein S 99.6 3E-16 1E-20 111.5 1.7 61 1-61 114-175 (180)
6 3bbn_D Ribosomal protein S4; s 99.1 2.7E-11 9.2E-16 87.0 3.7 43 1-45 100-142 (201)
7 2vqe_D 30S ribosomal protein S 98.9 7.9E-10 2.7E-14 79.0 3.6 43 1-45 110-152 (209)
8 3r8n_D 30S ribosomal protein S 98.9 2.6E-10 8.8E-15 82.2 1.0 39 1-39 106-144 (205)
9 1c05_A Ribosomal protein S4 de 98.9 1.2E-09 4E-14 75.0 3.7 42 2-45 63-104 (159)
10 3j20_E 30S ribosomal protein S 98.3 3.4E-07 1.2E-11 67.8 2.7 39 2-40 56-94 (243)
11 3kbg_A 30S ribosomal protein S 98.2 6.1E-07 2.1E-11 65.4 3.6 38 2-39 21-58 (213)
12 2k6p_A Uncharacterized protein 97.9 4.7E-06 1.6E-10 51.2 1.8 38 2-40 13-50 (92)
13 1p9k_A ORF, hypothetical prote 97.8 3.9E-06 1.3E-10 50.7 0.4 39 2-42 33-71 (79)
14 1dm9_A Hypothetical 15.5 KD pr 97.8 1.5E-05 5.3E-10 53.0 3.3 39 2-41 21-59 (133)
15 3hp7_A Hemolysin, putative; st 97.2 0.00016 5.5E-09 53.4 2.5 45 2-48 19-66 (291)
16 1vio_A Ribosomal small subunit 97.0 0.00052 1.8E-08 48.3 3.8 38 3-42 15-52 (243)
17 1ksk_A Ribosomal small subunit 96.9 0.00077 2.6E-08 47.0 3.4 38 3-42 16-53 (234)
18 3dh3_A Ribosomal large subunit 95.8 0.0056 1.9E-07 45.1 3.0 36 4-40 20-55 (290)
19 1v9f_A Ribosomal large subunit 95.8 0.0016 5.5E-08 47.7 0.0 39 3-41 30-68 (325)
20 1fm0_D Molybdopterin convertin 92.9 0.19 6.5E-06 29.2 4.5 30 16-50 52-81 (81)
21 2jan_A Tyrosyl-tRNA synthetase 91.5 0.084 2.9E-06 41.1 2.2 34 1-34 367-400 (432)
22 1h3f_A Tyrosyl-tRNA synthetase 91.2 0.17 5.7E-06 39.2 3.5 34 1-34 380-413 (432)
23 1jil_A Tyrrs, tyrosyl-tRNA syn 91.2 0.039 1.3E-06 42.5 0.0 35 1-35 364-398 (420)
24 2q5w_D Molybdopterin convertin 91.1 0.29 9.9E-06 28.2 3.7 30 16-50 48-77 (77)
25 2ts1_A Tyrosyl-tRNA synthetase 88.6 0.084 2.9E-06 40.8 0.0 34 1-34 363-396 (419)
26 1vjk_A Molybdopterin convertin 87.3 0.31 1E-05 29.8 2.0 32 14-50 67-98 (98)
27 3dwg_C 9.5 kDa culture filtrat 87.0 0.6 2E-05 27.9 3.2 33 14-50 58-93 (93)
28 2g1e_A Hypothetical protein TA 83.8 0.62 2.1E-05 27.3 2.1 34 13-50 54-90 (90)
29 3rpf_C Molybdopterin convertin 83.2 0.98 3.3E-05 26.2 2.8 34 13-50 41-74 (74)
30 2ktl_A Tyrosyl-tRNA synthetase 82.1 0.3 1E-05 34.0 0.2 25 1-25 61-85 (164)
31 2qjl_A URM1, ubiquitin-related 81.5 1.4 4.8E-05 26.9 3.2 31 16-50 66-99 (99)
32 3po0_A Small archaeal modifier 74.1 3.1 0.00011 24.4 3.1 32 14-50 58-89 (89)
33 2l52_A Methanosarcina acetivor 71.8 1.6 5.4E-05 26.8 1.4 31 16-50 66-99 (99)
34 3iz6_D 40S ribosomal protein S 71.6 1.9 6.4E-05 32.1 2.0 31 3-33 56-86 (265)
35 3u5c_E RP5, S7, YS6, 40S ribos 70.8 1.9 6.5E-05 32.0 1.9 37 3-39 56-92 (261)
36 1rws_A Hypothetical protein PF 69.6 4.1 0.00014 23.8 2.8 30 16-50 48-77 (77)
37 4hsp_A Hypothetical protein; P 65.7 2.5 8.5E-05 29.0 1.5 32 18-50 51-85 (150)
38 1v8c_A MOAD related protein; r 63.1 4.7 0.00016 27.3 2.5 35 13-51 51-88 (168)
39 2xzm_W 40S ribosomal protein S 63.0 4.6 0.00016 30.0 2.6 37 3-39 56-94 (260)
40 1tyg_B YJBS; alpha beta barrel 58.0 9.6 0.00033 23.4 3.0 31 17-49 55-86 (87)
41 2k9x_A Tburm1, uncharacterized 57.7 4 0.00014 26.0 1.3 32 16-51 69-103 (110)
42 3u5c_J 40S ribosomal protein S 57.1 4 0.00014 29.0 1.3 25 48-72 168-192 (197)
43 2zai_A Oligosaccharyl transfer 54.9 5.3 0.00018 32.2 1.8 30 13-43 354-383 (497)
44 1ryj_A Unknown; beta/alpha pro 54.5 21 0.00074 20.2 4.0 29 17-50 42-70 (70)
45 3n3y_A Thymidylate synthase TH 53.9 3.2 0.00011 29.0 0.4 18 2-19 71-88 (216)
46 4gt9_A TS, tsase, thymidylate 53.0 3.8 0.00013 29.0 0.7 17 4-20 81-97 (232)
47 2cu3_A Unknown function protei 46.2 27 0.00093 19.3 3.5 31 16-50 31-64 (64)
48 1f0z_A THis protein; ubiquitin 45.8 12 0.00042 20.9 2.0 33 16-50 33-66 (66)
49 2ppw_A Conserved domain protei 43.4 2.7 9.4E-05 30.3 -1.4 57 1-61 95-157 (216)
50 2cfa_A THYX, thymidylate synth 42.2 7 0.00024 27.1 0.6 16 4-19 69-84 (217)
51 1wgk_A Riken cDNA 2900073H19 p 39.8 8.8 0.0003 24.4 0.8 34 14-51 73-109 (114)
52 3c5y_A Ribose/galactose isomer 39.5 3.5 0.00012 30.2 -1.3 57 1-61 111-173 (231)
53 3fnn_A TS, tsase, thymidylate 38.6 7.6 0.00026 28.1 0.4 17 3-19 91-107 (256)
54 3uv0_A Mutator 2, isoform B; F 37.4 17 0.00058 23.6 1.8 22 13-36 60-81 (102)
55 3l51_B Structural maintenance 36.8 13 0.00045 24.3 1.3 36 2-38 122-162 (166)
56 2o8m_C Protease; NS3, NS4A, vi 36.4 5.7 0.0002 20.3 -0.4 17 14-30 8-24 (26)
57 3ono_A Ribose/galactose isomer 31.6 6.4 0.00022 28.3 -1.0 58 1-62 94-157 (214)
58 3gwc_A TS, tsase, thymidylate 31.6 13 0.00044 26.9 0.6 16 4-19 86-101 (258)
59 1f0l_A Diphtheria toxin; bacte 31.6 38 0.0013 26.6 3.3 32 13-47 446-477 (535)
60 1yzy_A Hypothetical protein HI 27.7 20 0.00069 26.9 1.1 28 1-28 111-138 (413)
61 2k5p_A THis protein, thiamine- 27.5 50 0.0017 19.4 2.7 34 16-51 36-70 (78)
62 3r4i_A Citrate lyase; TIM beta 27.2 21 0.00072 26.3 1.1 24 6-29 274-303 (339)
63 2kl0_A Putative thiamin biosyn 26.1 40 0.0014 19.5 2.0 33 16-50 32-65 (73)
64 3dqq_A Putative tRNA synthase; 24.6 22 0.00076 26.8 0.8 26 1-26 114-139 (421)
65 1sgj_A Citrate lyase, beta sub 22.5 18 0.00063 25.4 0.0 24 6-29 241-273 (284)
66 3qqw_A Putative citrate lyase; 22.0 18 0.00061 26.6 -0.1 24 6-29 275-304 (332)
67 3u7z_A Putative metal binding 21.6 70 0.0024 20.2 2.7 29 16-44 70-98 (101)
No 1
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.93 E-value=9.1e-28 Score=173.08 Aligned_cols=76 Identities=51% Similarity=0.793 Sum_probs=70.2
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeeeeCCCCCCCCcchhhhhhhhhhhccCCCCCCcccC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~~pgR~krk~~~~~~~~~~~~~~e~~~ 76 (76)
+|+|+.+|||||.||||.|||++|++|||+|+++++.+|+|..+|||+++.|||+|||+++++.+++++++|||||
T Consensus 120 ~a~SR~~ArqlI~~GhV~VNG~~V~~Ps~~V~~gde~~I~~~~~spyv~~~~gr~~rk~~~~~~~~~~~~~~~~~~ 195 (195)
T 3iz6_C 120 MAKSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEEEDEE 195 (195)
T ss_dssp CHHHHSCTTSHHHHHSTTTSCCCCCCCCCCCSSSCSSSSCSSSCCCCCCCCCCHHHHHHHHTTTSSSSCCCCCCCC
T ss_pred ccCCHHHHHHHHHcCCEEECCEEeCCCCcCcCCCCEEEEEecCCCCCCCCCchhHHHHHHhhccCCCCCccccccC
Confidence 5789999999999999999999999999999999999999999999999999999999999987776676666664
No 2
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=99.91 E-value=6.8e-26 Score=163.51 Aligned_cols=63 Identities=46% Similarity=0.754 Sum_probs=61.2
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeeeeCCCCCCCCcchhhhhhhhhh
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKA 63 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~~pgR~krk~~~~~ 63 (76)
+|+|+.+|||||.||||.|||++|++|||+|++++++.|.|..+|||.+++|||+|||+++++
T Consensus 118 ~a~Sr~~ArqLI~~GhV~VNG~~V~~Ps~~V~~g~ed~I~~~~~spyvs~~~gr~~rk~~~~~ 180 (197)
T 3u5c_J 118 LAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRNAARK 180 (197)
T ss_dssp TTSSHHHHHHHHHTSCCBSSSCBCCCTTCCCCSTTGGGCBCCSSSSSSSSCCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcCCEEECCEEeCCCccccCCCCccEEEEcCCCCCcCCCchhHHHHHHHhh
Confidence 588999999999999999999999999999999999999999999999999999999999885
No 3
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=99.81 E-value=1.5e-20 Score=133.21 Aligned_cols=63 Identities=44% Similarity=0.718 Sum_probs=59.9
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeeeeCCCCCCCCcchhhhhhhhhh
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKA 63 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~~pgR~krk~~~~~ 63 (76)
+|+|+.+|||||.||||.|||++|++|||+|.++|++.|.|...|||.++.|||+|||+++++
T Consensus 118 ~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~d~~~I~v~~~s~~~~~~~~r~~~~~~~~~ 180 (181)
T 2xzm_D 118 LANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFASTSPLGGGREGRTKRKNAKKS 180 (181)
T ss_dssp CSSSTTHHHHHTTTTCCEETTEECCCSCCBCCSTTSSCEECTTSTTTTTCCSHHHHHHHHHC-
T ss_pred ccCCHHHHHHHHHCCEEEECCEEECCCCcCCCCCCceEEEEeCCCccCCCCCchhhhhhhccC
Confidence 578999999999999999999999999999999999999999999999999999999998864
No 4
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-16 Score=96.41 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=48.0
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeeeeCCCCCCCC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGG 51 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~~ 51 (76)
+|+|+.+|||||.||||.|||++|++|||+|++++++.|.|...|++....
T Consensus 19 la~SR~~A~~lI~~G~V~Vng~~v~kps~~V~~~~~d~I~~~~~~~~~~~~ 69 (71)
T 2cqj_A 19 MAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKISGPS 69 (71)
T ss_dssp CSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEESCCSSSCCCC
T ss_pred CcCCHHHHHHHHHCCcEEECCEEECCCCCCCCCCCCcEEEEECCceecccc
Confidence 589999999999999999999999999999999999999999999997653
No 5
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.58 E-value=3e-16 Score=111.49 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=55.8
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeeeeCCCCCCCC-cchhhhhhhh
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGG-TGRVKRKNLR 61 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~~-pgR~krk~~~ 61 (76)
+|.|+.+|||||.||||.|||++|++|||+|.+++++.|.|..+|||..+. |+|.-.-+++
T Consensus 114 ~a~SR~~Ar~LI~~G~V~VNg~~V~~Ps~~V~~~~eD~I~v~~~s~i~~~~~~~~~~~~~~~ 175 (180)
T 3j20_D 114 LARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPFANPQHPERMMIEKAK 175 (180)
T ss_dssp SSSSHHHHHHHHHHTCCEESSSBCCCSSCCCCTGGGGCEECSSCSSSSSSCCHHHHHHHHCC
T ss_pred ccCcHHHHHHHHHcCCeEECCEEeCCCCcccCCCCCCEEEEeCCCcccCCCCCcchhHHHHh
Confidence 578999999999999999999999999999999999999999999999887 8887665444
No 6
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.13 E-value=2.7e-11 Score=86.97 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=37.6
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeeeeCC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNS 45 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~S 45 (76)
++.|+.+|||||.||||.|||++|++|||.|+++| .|.+...+
T Consensus 100 ~a~SR~~ArqLI~~G~V~VNG~~V~~pS~~V~~gD--~I~V~~~~ 142 (201)
T 3bbn_D 100 MAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQD--TIMARDEQ 142 (201)
T ss_dssp SSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTE--EEEECSST
T ss_pred CcCCHHHHHHHHhCCcEEeCCEEEeecceecCCCC--EEEEcccc
Confidence 46899999999999999999999999999999986 56666443
No 7
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.90 E-value=7.9e-10 Score=79.01 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeeeeCC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNS 45 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~S 45 (76)
++.|+.+|||||.||||.|||++|++|||.|+++| .|.+...|
T Consensus 110 ~~~SR~~arqLI~~G~V~VNG~~v~~ps~~V~~gD--~I~V~~~~ 152 (209)
T 2vqe_D 110 FAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGD--EIAVAEKS 152 (209)
T ss_dssp SSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTC--EEEECGGG
T ss_pred CcCCHHHHHHHHHCCCEEECCEEeCcCCcCcCCCC--EEEEcCcc
Confidence 36799999999999999999999999999999976 57776553
No 8
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=98.89 E-value=2.6e-10 Score=82.23 Aligned_cols=39 Identities=26% Similarity=0.225 Sum_probs=34.9
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCCCCce
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHI 39 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I 39 (76)
++.|+.+|||||.||||.|||++|++|||.|++||.=.|
T Consensus 106 ~~~SR~~ArqLI~~G~V~VNG~~V~~ps~~Vk~GD~I~V 144 (205)
T 3r8n_D 106 FGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSI 144 (205)
T ss_dssp SCSSHHHHHHHHHTTCCBSSSSBCCCTTCBCCTTBCCBC
T ss_pred chhHHHHHHHHHHCCCEEECCEEEccCCcCcCCCCEEEe
Confidence 367999999999999999999999999999999975333
No 9
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.87 E-value=1.2e-09 Score=75.00 Aligned_cols=42 Identities=26% Similarity=0.187 Sum_probs=37.3
Q ss_pred CccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeeeeCC
Q psy7990 2 CSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNS 45 (76)
Q Consensus 2 ~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~S 45 (76)
++|+.+|||||.||||.|||++|+.|||.|+++| .|.+...|
T Consensus 63 ~~SR~~ar~lI~~G~V~VNG~~v~~ps~~V~~gD--~I~V~~~~ 104 (159)
T 1c05_A 63 ARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQ--TIAVREKS 104 (159)
T ss_dssp CSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTC--EEEECGGG
T ss_pred cCCHHHHHHHHHCCCEEECCEEeCcCCcEeCCCC--EEEEeCce
Confidence 6799999999999999999999999999999986 57776553
No 10
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.27 E-value=3.4e-07 Score=67.77 Aligned_cols=39 Identities=13% Similarity=-0.060 Sum_probs=35.3
Q ss_pred CccchhhhhhhhcCCeEECCEEeCccceeeecCCCCcee
Q psy7990 2 CSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHID 40 (76)
Q Consensus 2 ~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~ 40 (76)
..|..+|||++.||||.|||++++.|+|-|...|.-.|.
T Consensus 56 A~t~rEar~Iv~~~~I~VdGKvr~d~~ypvG~mDVIsI~ 94 (243)
T 3j20_E 56 AKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVSIP 94 (243)
T ss_dssp CSSHHHHHHHHHHCSCEETTEECCCSSCEECTTCEEEET
T ss_pred ccCHHHHHHHHHCCcEEECCEEeccccCCcccceEEEec
Confidence 357899999999999999999999999999999876664
No 11
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=98.25 E-value=6.1e-07 Score=65.37 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=34.5
Q ss_pred CccchhhhhhhhcCCeEECCEEeCccceeeecCCCCce
Q psy7990 2 CSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHI 39 (76)
Q Consensus 2 ~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I 39 (76)
..|..+|||++.||||.|||++++.|+|.|...|.-.|
T Consensus 21 A~t~rEarkIv~~~~I~VDGKvr~d~~ypvG~mDVIsI 58 (213)
T 3kbg_A 21 SDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI 58 (213)
T ss_dssp TTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEE
T ss_pred cccHHHHHHHHHCCCEEECCEEecccCCCccceeEEEe
Confidence 35789999999999999999999999999999987665
No 12
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=97.87 E-value=4.7e-06 Score=51.23 Aligned_cols=38 Identities=11% Similarity=0.004 Sum_probs=32.3
Q ss_pred CccchhhhhhhhcCCeEECCEEeCccceeeecCCCCcee
Q psy7990 2 CSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHID 40 (76)
Q Consensus 2 ~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~ 40 (76)
|+|...|++||.+|.|.|||+.+ .||+.|+.||+=.|.
T Consensus 13 ~~sR~~~~~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 13 VKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLH 50 (92)
T ss_dssp CCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEEC
T ss_pred CCCHHHHHHHHHCCcEEECCEEc-CCCCCcCCCCEEEEE
Confidence 46788899999999999999998 699999999754443
No 13
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=97.78 E-value=3.9e-06 Score=50.75 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=34.3
Q ss_pred CccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeee
Q psy7990 2 CSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFS 42 (76)
Q Consensus 2 ~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~ 42 (76)
|+|+.+|++||..|.|.|||++++-|++.|..+| .|.+.
T Consensus 33 ~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~gd--~I~v~ 71 (79)
T 1p9k_A 33 SESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQ--TVSFA 71 (79)
T ss_dssp CSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSE--EEEET
T ss_pred CCCHHHHHHHHHCCEEEECCEEecCCCCCCCCCC--EEEEC
Confidence 6799999999999999999999999999998775 45553
No 14
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=97.78 E-value=1.5e-05 Score=53.00 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=33.7
Q ss_pred CccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceee
Q psy7990 2 CSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDF 41 (76)
Q Consensus 2 ~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~ 41 (76)
+.|...|++||.+|+|.|||+.+ .||+.|+.||+=.|.+
T Consensus 21 ~~SRs~a~~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~ 59 (133)
T 1dm9_A 21 YKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 (133)
T ss_dssp SSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHCCcEEECCEEc-CCCCEeCCCCEEEEEe
Confidence 35788999999999999999998 6999999998655554
No 15
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=97.19 E-value=0.00016 Score=53.35 Aligned_cols=45 Identities=2% Similarity=-0.219 Sum_probs=37.5
Q ss_pred CccchhhhhhhhcCCeEECC-E-EeCccceeeecCCCCceeeeeC-CCCC
Q psy7990 2 CSALFLSTQYWEHQGPGVRK-Q-VVNIPSFVVRLDSQKHIDFSLN-SPFG 48 (76)
Q Consensus 2 ~~t~~~ARQ~V~HgHI~Vng-~-~VniPSy~Vk~~de~~I~~~~~-SP~~ 48 (76)
+.|+.+|++||..|+|.||| + +++.||+.|+.+++ |.+... .||-
T Consensus 19 ~~SR~~a~~lI~~G~V~Vng~~~~v~kp~~~V~~~d~--I~v~g~~~~yv 66 (291)
T 3hp7_A 19 FETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTE--LKLKGEKLRYV 66 (291)
T ss_dssp SSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCC--EEETTCCCCSS
T ss_pred cccHHHHHHHHHCCeEEECCeEEEEccCCCCCCCCCE--EEEcccccccc
Confidence 56899999999999999999 8 89999999999864 666543 3454
No 16
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=97.03 E-value=0.00052 Score=48.32 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=33.1
Q ss_pred ccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeee
Q psy7990 3 SALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFS 42 (76)
Q Consensus 3 ~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~ 42 (76)
-|+.+|+++|..|.|.|||++|+.|++.|+.+| .|.+.
T Consensus 15 ~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD--~I~v~ 52 (243)
T 1vio_A 15 LTRSQATKAIRQSAVKINGEIVKSGSVQISQED--EIYFE 52 (243)
T ss_dssp CCHHHHHHHHHTTCEEETTEECCCTTCEECTTS--CEEET
T ss_pred CCHHHHHHHHHcCcEEECCEEeCCCCCCcCCCC--EEEEe
Confidence 367889999999999999999988999999987 55553
No 17
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=96.85 E-value=0.00077 Score=47.02 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=32.6
Q ss_pred ccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceeee
Q psy7990 3 SALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFS 42 (76)
Q Consensus 3 ~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~~ 42 (76)
-|+..|+++|..|.|.|||++|+-|++.|+.+| .|.+.
T Consensus 16 ~SR~~~~~li~~G~V~VNG~~v~~~~~~v~~gD--~I~v~ 53 (234)
T 1ksk_A 16 VSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH--DVAYD 53 (234)
T ss_dssp CCHHHHHHHHHTTCEEETTEECCCTTCEECTTC--CEEET
T ss_pred CCHHHHHHHHHcCeEEECCEEeCCCCCCCCCCC--EEEEe
Confidence 367889999999999999999988999999986 45543
No 18
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=95.80 E-value=0.0056 Score=45.05 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=31.1
Q ss_pred cchhhhhhhhcCCeEECCEEeCccceeeecCCCCcee
Q psy7990 4 ALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHID 40 (76)
Q Consensus 4 t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~ 40 (76)
|+.+|++||..|.|.|||++| -|++.|..+|.=.|+
T Consensus 20 SR~~a~~lI~~G~V~VNG~~v-~~~~~V~~gD~I~v~ 55 (290)
T 3dh3_A 20 SRREADRYIEQGNVFLNGKRA-TIGDQVKPGDVVKVN 55 (290)
T ss_dssp CHHHHHHHHHTTCEEETTEEC-CTTCEECTTCCEEET
T ss_pred CHHHHHHHHHCCCEEECCEEc-cCCcCcCCCCEEEec
Confidence 778999999999999999999 699999998654443
No 19
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=95.77 E-value=0.0016 Score=47.70 Aligned_cols=39 Identities=18% Similarity=-0.012 Sum_probs=0.0
Q ss_pred ccchhhhhhhhcCCeEECCEEeCccceeeecCCCCceee
Q psy7990 3 SALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDF 41 (76)
Q Consensus 3 ~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I~~ 41 (76)
.|+.+|++||..|.|.|||++|..|++.|+.||.=.|.+
T Consensus 30 ~SR~~~~~lI~~G~V~VNG~~v~~~~~~v~~gD~I~v~~ 68 (325)
T 1v9f_A 30 YSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 68 (325)
T ss_dssp ---------------------------------------
T ss_pred cCHHHHHHHHHCCCEEECCEEccCCCCEeCCCCEEEEec
Confidence 467889999999999999999888999999998655544
No 20
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=92.90 E-value=0.19 Score=29.16 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=23.1
Q ss_pred CeEECCEEeCccceeeecCCCCceeeeeCCCCCCC
Q psy7990 16 GPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 16 HI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
.|.|||+.|+ ++..++.+|+ |.|.+ |++|+
T Consensus 52 ~v~vN~~~v~-~~~~l~~gD~--V~i~P--pv~GG 81 (81)
T 1fm0_D 52 LAAVNQTLVS-FDHPLTDGDE--VAFFP--PVTGG 81 (81)
T ss_dssp EEEETTEECC-TTCBCCTTCE--EEEEC--CCCCC
T ss_pred EEEECCEECC-CCCCCCCCCE--EEEeC--CCCCC
Confidence 4999999997 6777776665 88877 77764
No 21
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=91.52 E-value=0.084 Score=41.10 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=30.2
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLD 34 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~ 34 (76)
+|+|--+||.+|.-|-|.|||.+|+=|.+.+..+
T Consensus 367 l~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~ 400 (432)
T 2jan_A 367 LSASKGAARRTIHEGGVSVNNIRVDNEEWVPQSS 400 (432)
T ss_dssp SCSSHHHHHHHHTTTCEEESSCEECCTTCCCCGG
T ss_pred CcccHHHHHHHHHhCCEEECCEEccChhcccChh
Confidence 5889999999999999999999998888777644
No 22
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=91.20 E-value=0.17 Score=39.24 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.2
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLD 34 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~ 34 (76)
+|+|--+||.||.-|-|.|||.+|+=|.+.+..+
T Consensus 380 l~~S~~earr~i~~ggv~vn~~~v~d~~~~~~~~ 413 (432)
T 1h3f_A 380 LTPSNAEARRLIQNRGLRLDGEVLTDPMLQVDLS 413 (432)
T ss_dssp SSSSHHHHHHHHHTTCEEETTEECCCTTCEEECS
T ss_pred CcccHHHHHHHHHhCCEEECCEEecCccceecCC
Confidence 5889999999999999999999999899888765
No 23
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=91.20 E-value=0.039 Score=42.51 Aligned_cols=35 Identities=0% Similarity=-0.062 Sum_probs=0.0
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecCC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDS 35 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~d 35 (76)
+|+|--+||.+|.-|-|.|||.+|+-|.+.+..++
T Consensus 364 l~~SksEARRlI~~GgV~VNgekv~d~~~~l~~~d 398 (420)
T 1jil_A 364 ISPSKRQAREDVNNGAIYINGERQQDVNYALAPED 398 (420)
T ss_dssp -----------------------------------
T ss_pred CccCHHHHHHHHHhCCEEECCEEecccccccCccc
Confidence 48899999999999999999999998988887553
No 24
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=91.05 E-value=0.29 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=23.0
Q ss_pred CeEECCEEeCccceeeecCCCCceeeeeCCCCCCC
Q psy7990 16 GPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 16 HI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
.|.|||+.|+ ++..++.+| .|++.+ |++|+
T Consensus 48 ~v~vNg~~v~-~~~~L~~gD--~V~i~p--pv~GG 77 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPND--TVALIP--PVSGG 77 (77)
T ss_dssp EEEETTEEEC-TTSEECTTC--EEEEEC--SCCCC
T ss_pred EEEECCEECC-CCCCcCCCC--EEEEEC--CCCCC
Confidence 5999999998 577666665 488877 77764
No 25
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=88.62 E-value=0.084 Score=40.83 Aligned_cols=34 Identities=3% Similarity=-0.051 Sum_probs=0.0
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccceeeecC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSFVVRLD 34 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~ 34 (76)
+|+|--+||.+|.-|-|.|||.+|+=|.+.+..+
T Consensus 363 l~~S~~earr~i~~ggv~in~~~v~d~~~~~~~~ 396 (419)
T 2ts1_A 363 ISPSKRQAREDIQNGAIYVNGERLQDVGAILTAE 396 (419)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHHHHHhCCEEECCEEecCcccccChh
Confidence 4889999999999999999999998888777643
No 26
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=87.30 E-value=0.31 Score=29.83 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=22.5
Q ss_pred cCCeEECCEEeCccceeeecCCCCceeeeeCCCCCCC
Q psy7990 14 HQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 14 HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
+--|.|||+.|. ++..|+.+|+ |.|.+ |++|+
T Consensus 67 ~v~v~VNg~~v~-~~~~L~dGDe--V~i~p--pv~GG 98 (98)
T 1vjk_A 67 DVNIAVNGRYVS-WDEELKDGDV--VGVFP--PVSGG 98 (98)
T ss_dssp SBEEEETTBCCC-TTCBCCTTCE--EEEES--CC---
T ss_pred cEEEEECCEECC-CCCCCCCCCE--EEEEC--CCCCC
Confidence 345999999998 6777777765 88876 77664
No 27
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=87.01 E-value=0.6 Score=27.95 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=24.4
Q ss_pred cCCeEECCEEeCc---cceeeecCCCCceeeeeCCCCCCC
Q psy7990 14 HQGPGVRKQVVNI---PSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 14 HgHI~Vng~~Vni---PSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
+-.|.|||+.|.- +...|+.+|+ |.|.+ |++|+
T Consensus 58 ~~~v~VN~~~v~~~~~~~~~L~~gDe--V~i~P--pv~GG 93 (93)
T 3dwg_C 58 FVNIYVNDEDVRFSGGLATAIADGDS--VTILP--AVAGG 93 (93)
T ss_dssp TEEEEETTEEGGGTTGGGCBCCTTCE--EEEEE--CCTTC
T ss_pred CEEEEECCEEccCcCCCCcCCCCCCE--EEEEC--CCCCC
Confidence 3468999999875 5777776665 88887 77764
No 28
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=83.84 E-value=0.62 Score=27.33 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=24.5
Q ss_pred hcCCeEECCEEeCc---cceeeecCCCCceeeeeCCCCCCC
Q psy7990 13 EHQGPGVRKQVVNI---PSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 13 ~HgHI~Vng~~Vni---PSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
.+-.|.|||+.|.- +...++.+|+ |.|.+ |++|+
T Consensus 54 ~~v~v~vN~~~v~~~~~~~~~l~~gD~--V~i~p--pv~GG 90 (90)
T 2g1e_A 54 KNVIILVNGNNITSMKGLDTEIKDDDK--IDLFP--PVAGG 90 (90)
T ss_dssp TTCEEEESSSBGGGTCSSSCBCCTTCE--EEEEC--CTTCC
T ss_pred cceEEEECCEEccccCCCCcCCCCCCE--EEEeC--CCCCC
Confidence 34569999998863 5777776665 88876 77764
No 29
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=83.19 E-value=0.98 Score=26.16 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=23.6
Q ss_pred hcCCeEECCEEeCccceeeecCCCCceeeeeCCCCCCC
Q psy7990 13 EHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 13 ~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
.+-.|.|||+.|.-+...++.| +.|.|.+ |++|+
T Consensus 41 ~~~~vavN~~~v~~~~~~l~~g--DeV~i~P--pvsGG 74 (74)
T 3rpf_C 41 GVCAIALNDHLIDNLNTPLKDG--DVISLLP--PVCGG 74 (74)
T ss_dssp TTCEEEESSSEECCTTCCCCTT--CEEEEEC--CBCCC
T ss_pred hccEEEECCEEcCCCCcCCCCC--CEEEEEC--CCCCC
Confidence 4566899999975466665555 5688877 67664
No 30
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=82.09 E-value=0.3 Score=33.99 Aligned_cols=25 Identities=8% Similarity=-0.009 Sum_probs=23.0
Q ss_pred CCccchhhhhhhhcCCeEECCEEeC
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVN 25 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~Vn 25 (76)
+|+|.-+||.||.-|-|.|||.+|.
T Consensus 61 La~SKsEARRlI~qGGv~VNg~kv~ 85 (164)
T 2ktl_A 61 LVASKSEGQRIINNNGAYVGSRPGV 85 (164)
T ss_dssp SCSTHHHHHHHHHHTCEEEEECCSC
T ss_pred cccCHHHHHHHHHhCCEEECCEecc
Confidence 5899999999999999999998874
No 31
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=81.51 E-value=1.4 Score=26.88 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=24.0
Q ss_pred CeEECCEEeC---ccceeeecCCCCceeeeeCCCCCCC
Q psy7990 16 GPGVRKQVVN---IPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 16 HI~Vng~~Vn---iPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
-|.||++-+. =+.+.|+.+|+ |.|.+ |++|+
T Consensus 66 ~v~VN~~~~~~~~~~d~~L~dgDe--Va~~P--pv~GG 99 (99)
T 2qjl_A 66 ITLINDTDWELEGEKDYILEDGDI--ISFTS--TLHGG 99 (99)
T ss_dssp EEEETTEEGGGGTGGGCBCCTTCE--EEEEE--CTTCC
T ss_pred EEEECCEEccccCCCCcCcCCCCE--EEEEC--CCCCC
Confidence 4899999875 36788887776 88887 78764
No 32
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=74.12 E-value=3.1 Score=24.39 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=23.6
Q ss_pred cCCeEECCEEeCccceeeecCCCCceeeeeCCCCCCC
Q psy7990 14 HQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 14 HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
+-.|.|||+.|. +...|+. -+.|.|.+ |++|+
T Consensus 58 ~~~v~VN~~~v~-~~~~l~~--gDeV~i~P--pv~GG 89 (89)
T 3po0_A 58 HINVLRNGEAAA-LGEATAA--GDELALFP--PVSGG 89 (89)
T ss_dssp TSEEEETTEECC-TTSBCCT--TCEEEEEC--CCSCC
T ss_pred cEEEEECCEECC-CCcccCC--CCEEEEEC--CCCCC
Confidence 457999999998 5666554 45788887 77764
No 33
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=71.78 E-value=1.6 Score=26.77 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=22.0
Q ss_pred CeEECCEEeC---ccceeeecCCCCceeeeeCCCCCCC
Q psy7990 16 GPGVRKQVVN---IPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 16 HI~Vng~~Vn---iPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
-|.|||+.|. -+.+.++.+|+ |.|.+ |++|+
T Consensus 66 ~v~VNg~~v~~~~~~~~~L~~gD~--V~i~p--pv~GG 99 (99)
T 2l52_A 66 NILINGNNIRHLEGLETLLKDSDE--IGILP--PVSGG 99 (99)
T ss_dssp EEEETTSCGGGTTSTTSCCCTTEE--EEEEC--CCSCC
T ss_pred EEEECCEEccccCCCCCCCCCCCE--EEEEC--CCCCC
Confidence 5899999884 35666666654 88876 77764
No 34
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=71.59 E-value=1.9 Score=32.14 Aligned_cols=31 Identities=6% Similarity=-0.108 Sum_probs=24.7
Q ss_pred ccchhhhhhhhcCCeEECCEEeCccceeeec
Q psy7990 3 SALFLSTQYWEHQGPGVRKQVVNIPSFVVRL 33 (76)
Q Consensus 3 ~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~ 33 (76)
-|..+|++++..|.|.|||++.+=+-|-|-.
T Consensus 56 ~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~ 86 (265)
T 3iz6_D 56 LTYREVISILMQRHVLVDGKVRTDKTYPAGF 86 (265)
T ss_dssp SCSSSTHHHHHTTCCEETTEECCCTTCCCCT
T ss_pred ccHHHHHHHHHCCcEEECCEEeccCCCCCcE
Confidence 4667999999999999999987766554443
No 35
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=70.82 E-value=1.9 Score=32.05 Aligned_cols=37 Identities=5% Similarity=-0.131 Sum_probs=28.5
Q ss_pred ccchhhhhhhhcCCeEECCEEeCccceeeecCCCCce
Q psy7990 3 SALFLSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHI 39 (76)
Q Consensus 3 ~t~~~ARQ~V~HgHI~Vng~~VniPSy~Vk~~de~~I 39 (76)
-|..+|++++..|.|.|||++.+=+-|-|-.=|.-.|
T Consensus 56 ~t~~EakkIl~q~~VkVDGkvrtD~~~PvG~MDVIsI 92 (261)
T 3u5c_E 56 LNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITL 92 (261)
T ss_dssp SSSHHHHHHHTTTCEEETTBCCCCTTCEEETTCEEEE
T ss_pred ccHHHHHHHHHCCcEEECCEEeccCCCCCceEEEEEE
Confidence 4668999999999999999988777665555444433
No 36
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=69.61 E-value=4.1 Score=23.78 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=21.3
Q ss_pred CeEECCEEeCccceeeecCCCCceeeeeCCCCCCC
Q psy7990 16 GPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 16 HI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
-|.|||+.|. ++..|+.+| .|+|.+ |++|+
T Consensus 48 ~VavNg~~v~-~~~~L~dGD--~V~i~p--pv~GG 77 (77)
T 1rws_A 48 IAKVNGKVVL-EDDEVKDGD--FVEVIP--VVSGG 77 (77)
T ss_dssp CEEETTEEEC-SSSCCCSSC--CCBCSC--CCCCC
T ss_pred EEEECCEECC-CCCCcCCCC--EEEEEc--ccccC
Confidence 4899999998 566666554 577665 66654
No 37
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=65.73 E-value=2.5 Score=29.00 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=22.2
Q ss_pred EECCEEeCccceeeecC-CC-Cc-eeeeeCCCCCCC
Q psy7990 18 GVRKQVVNIPSFVVRLD-SQ-KH-IDFSLNSPFGGG 50 (76)
Q Consensus 18 ~Vng~~VniPSy~Vk~~-de-~~-I~~~~~SP~~~~ 50 (76)
.+||+.|.||+|+|-.+ ++ .. -+|. =.||.+.
T Consensus 51 ~LdGk~VripGfvvPLe~~~~~~vteFl-LVPy~GA 85 (150)
T 4hsp_A 51 ALDGIEAKLPGYIVPLEISEAGLVTEFL-LVPYYGA 85 (150)
T ss_dssp GGTTEEEEEEEEEEEEEECTTSEEEEEE-EESSTTB
T ss_pred hhCCCEEEeccEEEEeccCCCCcEEEEE-EeCCCCc
Confidence 47999999999999877 33 33 4554 3455543
No 38
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=63.11 E-value=4.7 Score=27.26 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=25.6
Q ss_pred hcCCeEECCEEeCc---cceeeecCCCCceeeeeCCCCCCCC
Q psy7990 13 EHQGPGVRKQVVNI---PSFVVRLDSQKHIDFSLNSPFGGGG 51 (76)
Q Consensus 13 ~HgHI~Vng~~Vni---PSy~Vk~~de~~I~~~~~SP~~~~~ 51 (76)
.+--|.|||+.|.- .+..|+.+|+ |.|.+ |++|+.
T Consensus 51 ~~v~VaVNg~~v~~~~~~dt~L~dGDe--Vai~P--pVsGG~ 88 (168)
T 1v8c_A 51 ERVSVFLEGRDVRYLQGLSTPLSPGAT--LDLFP--PVAGGG 88 (168)
T ss_dssp TTCEEEETTEEGGGTTGGGCBCCTTCE--EEEEC--SCCSEE
T ss_pred CcEEEEECCEECCCcCCCccCCCCCCE--EEEEC--cccccc
Confidence 34459999999874 2666776665 88877 888774
No 39
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=62.97 E-value=4.6 Score=29.97 Aligned_cols=37 Identities=16% Similarity=-0.102 Sum_probs=27.6
Q ss_pred ccchhhhhhhhc--CCeEECCEEeCccceeeecCCCCce
Q psy7990 3 SALFLSTQYWEH--QGPGVRKQVVNIPSFVVRLDSQKHI 39 (76)
Q Consensus 3 ~t~~~ARQ~V~H--gHI~Vng~~VniPSy~Vk~~de~~I 39 (76)
-|..+|+.++.. |.|.|||++.+=+-|-|-.=|.-.|
T Consensus 56 ~t~rEak~Il~q~~~~VkVDGkvr~D~~~PvG~MDVIsI 94 (260)
T 2xzm_W 56 LNGRDVTLILNDKEQNVFVDGKVRRDKGYPTGLMDVVRI 94 (260)
T ss_dssp CSHHHHHHHTTSTTCCEEETTEECCCTTCEECTTCEEEE
T ss_pred cchhHHHHHHhccCCeEEECCEEeccCCCCCcEEEEEeE
Confidence 467899999999 9999999987666665554444333
No 40
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=57.95 E-value=9.6 Score=23.36 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=19.6
Q ss_pred eEECCEEeCcccee-eecCCCCceeeeeCCCCCC
Q psy7990 17 PGVRKQVVNIPSFV-VRLDSQKHIDFSLNSPFGG 49 (76)
Q Consensus 17 I~Vng~~VniPSy~-Vk~~de~~I~~~~~SP~~~ 49 (76)
|.|||..|.-..|. ..+.|.+.|+|.+ |.+|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei~~--~V~G 86 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEIVH--FVGG 86 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEEEE--ECCC
T ss_pred EEECCEECChhhcCCcCCCCCCEEEEEc--cccc
Confidence 78888888754332 3455556777776 4544
No 41
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=57.68 E-value=4 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=23.5
Q ss_pred CeEECCEEeC---ccceeeecCCCCceeeeeCCCCCCCC
Q psy7990 16 GPGVRKQVVN---IPSFVVRLDSQKHIDFSLNSPFGGGG 51 (76)
Q Consensus 16 HI~Vng~~Vn---iPSy~Vk~~de~~I~~~~~SP~~~~~ 51 (76)
.|+|||+-+. =..|.++.+|+ |.|. ||+.|+.
T Consensus 69 lVLVNg~d~e~l~gldt~L~dgD~--V~fi--stlhg~~ 103 (110)
T 2k9x_A 69 LVLVNSCDAEVVGGMDYVLNDGDT--VEFI--STLHGGL 103 (110)
T ss_dssp EEEESSSBHHHHTSSCCCCCSSCE--EEEE--ECCCCC-
T ss_pred EEEECCeeeeccCCcccCCCCcCE--EEEe--CCCcccc
Confidence 4899998774 35688888887 8885 4888775
No 42
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=57.11 E-value=4 Score=28.97 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=11.0
Q ss_pred CCCCcchhhhhhhhhhhccCCCCCC
Q psy7990 48 GGGGTGRVKRKNLRKAASSATAPTE 72 (76)
Q Consensus 48 ~~~~pgR~krk~~~~~~~~~~~~~~ 72 (76)
.-++--|++-|++..+.+++++++|
T Consensus 168 ~~gr~~rk~~~~~~~~~~~~~~~~~ 192 (197)
T 3u5c_J 168 RPGRVARRNAARKAEASGEAADEAD 192 (197)
T ss_dssp CCCHHHHHHHHHHHHHTCC------
T ss_pred CchhHHHHHHHhhcccCCCCCcccc
Confidence 3456666666666555444443333
No 43
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=54.87 E-value=5.3 Score=32.15 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=25.6
Q ss_pred hcCCeEECCEEeCccceeeecCCCCceeeee
Q psy7990 13 EHQGPGVRKQVVNIPSFVVRLDSQKHIDFSL 43 (76)
Q Consensus 13 ~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~ 43 (76)
.-|-..|||+.+| |+|.++.|+...+++-.
T Consensus 354 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 383 (497)
T 2zai_A 354 LLDAPKVNGEIRS-PTNILREGESGEIELKV 383 (497)
T ss_dssp ECSCCEETTEECC-TTBCSCTTCEEEEEEEE
T ss_pred ecCCcccCCEecC-CceecCCCCcCcEEEEe
Confidence 3466789999999 99999999999888753
No 44
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=54.46 E-value=21 Score=20.22 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=20.4
Q ss_pred eEECCEEeCccceeeecCCCCceeeeeCCCCCCC
Q psy7990 17 PGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 17 I~Vng~~VniPSy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
|.|||..|. ++. ...+-+.|+|.+ |.+|+
T Consensus 42 vavN~~~v~-~~~--~L~~gD~V~ii~--~V~GG 70 (70)
T 1ryj_A 42 VKKNGQIVI-DEE--EIFDGDIIEVIR--VIYGG 70 (70)
T ss_dssp EEETTEECC-TTS--BCCTTCEEEEEE--CTTCC
T ss_pred EEECCEECC-Ccc--cCCCCCEEEEEe--ccccC
Confidence 899999987 555 455556788876 55553
No 45
>3n3y_A Thymidylate synthase THYX; transferase; HET: UMP FAD; 2.31A {Helicobacter pylori} PDB: 3ah5_A*
Probab=53.93 E-value=3.2 Score=29.00 Aligned_cols=18 Identities=6% Similarity=-0.171 Sum_probs=14.8
Q ss_pred CccchhhhhhhhcCCeEE
Q psy7990 2 CSALFLSTQYWEHQGPGV 19 (76)
Q Consensus 2 ~~t~~~ARQ~V~HgHI~V 19 (76)
+++++.++||+.|++...
T Consensus 71 g~SR~~~~Ql~RHR~~S~ 88 (216)
T 3n3y_A 71 GLSRGALQELSRHRIASL 88 (216)
T ss_dssp EEEHHHHHHHTTCCSSEE
T ss_pred cccHHHHHHHHhccCCcc
Confidence 367899999999998644
No 46
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=53.05 E-value=3.8 Score=28.98 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=14.6
Q ss_pred cchhhhhhhhcCCeEEC
Q psy7990 4 ALFLSTQYWEHQGPGVR 20 (76)
Q Consensus 4 t~~~ARQ~V~HgHI~Vn 20 (76)
+++-||||+.|++...|
T Consensus 81 ~r~v~~Ql~RHR~~S~n 97 (232)
T 4gt9_A 81 PIFVARQWFRHRIASYN 97 (232)
T ss_dssp EHHHHHHHTTCCSSEEE
T ss_pred cHHHHHHHHHhccchhh
Confidence 67889999999997665
No 47
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=46.22 E-value=27 Score=19.32 Aligned_cols=31 Identities=6% Similarity=0.001 Sum_probs=20.0
Q ss_pred CeEECCEEeCcc---ceeeecCCCCceeeeeCCCCCCC
Q psy7990 16 GPGVRKQVVNIP---SFVVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 16 HI~Vng~~VniP---Sy~Vk~~de~~I~~~~~SP~~~~ 50 (76)
-|.|||..|.-- +..+ .+-+.|+|.+ |.+|+
T Consensus 31 ~vavN~~~v~~~~~~~~~L--~dgD~v~i~~--~V~GG 64 (64)
T 2cu3_A 31 AVLLNEEAFLGLEVPDRPL--RDGDVVEVVA--LMQGG 64 (64)
T ss_dssp EEEETTEEEEGGGCCCCCC--CTTCEEEEEE--CCCC-
T ss_pred EEEECCEECCccccCCcCC--CCCCEEEEEe--ecccC
Confidence 489999998743 2444 4556788776 56553
No 48
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=45.84 E-value=12 Score=20.89 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=19.8
Q ss_pred CeEECCEEeCccce-eeecCCCCceeeeeCCCCCCC
Q psy7990 16 GPGVRKQVVNIPSF-VVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 16 HI~Vng~~VniPSy-~Vk~~de~~I~~~~~SP~~~~ 50 (76)
-|.|||..|.-..+ .....+-+.|+|.+ |.+|+
T Consensus 33 ~vavN~~~v~~~~~~~~~L~~gD~v~i~~--~V~GG 66 (66)
T 1f0z_A 33 ALAINQQIVPREQWAQHIVQDGDQILLFQ--VIAGG 66 (66)
T ss_dssp EEEETTEEECHHHHTTCCCCTTEEECEEE--SCCCC
T ss_pred EEEECCEECCchhcCCcCCCCCCEEEEEe--ecccC
Confidence 38899999874322 12344556677776 55543
No 49
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=43.36 E-value=2.7 Score=30.31 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=40.5
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccc-eee--ecCCC--CceeeeeCCCCCCCC-cchhhhhhhh
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPS-FVV--RLDSQ--KHIDFSLNSPFGGGG-TGRVKRKNLR 61 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPS-y~V--k~~de--~~I~~~~~SP~~~~~-pgR~krk~~~ 61 (76)
.|...+.|+....|- |.+++.+|+ ..+ ..+.- .-++-..+++|.+++ ..|+-++..+
T Consensus 95 lc~d~~sA~laR~HN----nANVL~lG~~rvi~~g~ela~~~Iv~~fL~t~F~gG~~~~R~~~~~rn 157 (216)
T 2ppw_A 95 LAVDPTDAYLYSQIN----GGNALSIPYAKGFGWGAELTLKLMFERLFAEEMGGGYPRERVIPEQRN 157 (216)
T ss_dssp ECSSHHHHHHHHHHT----CCSEEEEESSTTCCTTHHHHHHHHHHHHHSSCTTCCSSGGGHHHHHHH
T ss_pred EeCCHHHHHHHHHhc----CceEEEeCCceecccCHHHHHHHHHHHHHcCCcCCCCChHHHhHHHHh
Confidence 388899999999986 677788887 544 22222 345667899999998 7777766443
No 50
>2cfa_A THYX, thymidylate synthase; FDTS, TSCP, flavin dependent thymidylate synthase FAD, flavoprotein, nucleotide biosynthesis; HET: CME FAD; 2.3A {Paramecium bursaria chlorella virus 1} PDB: 2cfa_B*
Probab=42.23 E-value=7 Score=27.05 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=13.4
Q ss_pred cchhhhhhhhcCCeEE
Q psy7990 4 ALFLSTQYWEHQGPGV 19 (76)
Q Consensus 4 t~~~ARQ~V~HgHI~V 19 (76)
+++.+|||+.|++...
T Consensus 69 sr~~~~ql~RHR~~S~ 84 (217)
T 2cfa_A 69 SRGIAAQVLRHRSFHF 84 (217)
T ss_dssp EHHHHHHHTTCTTSEE
T ss_pred cHHHHHHHHHhcCCCc
Confidence 6789999999998643
No 51
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=39.82 E-value=8.8 Score=24.44 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=25.0
Q ss_pred cCCeEECCEEeC---ccceeeecCCCCceeeeeCCCCCCCC
Q psy7990 14 HQGPGVRKQVVN---IPSFVVRLDSQKHIDFSLNSPFGGGG 51 (76)
Q Consensus 14 HgHI~Vng~~Vn---iPSy~Vk~~de~~I~~~~~SP~~~~~ 51 (76)
+-.|+|||+-+. =..+.|+.+|+ |.|-+ |++|+.
T Consensus 73 ~i~VlVN~~di~~l~gldt~L~dGDe--V~iip--~vaGG~ 109 (114)
T 1wgk_A 73 GILVLINDADWELLGELDYQLQDQDS--ILFIS--TLHGGS 109 (114)
T ss_dssp SEEEEESSSBHHHHCTTTCBCCSSEE--EEEEE--CSCCCC
T ss_pred CeEEEECCeeeeccCCcCcCCCCCCE--EEEeC--CCCCCC
Confidence 345999998664 37788888887 88865 777763
No 52
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=39.53 E-value=3.5 Score=30.15 Aligned_cols=57 Identities=7% Similarity=-0.039 Sum_probs=39.9
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccc-eee--ecCCC--CceeeeeCCCCCCCC-cchhhhhhhh
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPS-FVV--RLDSQ--KHIDFSLNSPFGGGG-TGRVKRKNLR 61 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPS-y~V--k~~de--~~I~~~~~SP~~~~~-pgR~krk~~~ 61 (76)
.|...+.|+....|- |.+++.+|+ ..+ ..+.- .-++-..+++|.+++ ..|+.++..+
T Consensus 111 lc~d~~sA~laR~HN----nANVL~lGa~rvig~g~elA~~~Ivd~fL~teFeGGypq~R~~~~~rn 173 (231)
T 3c5y_A 111 LVIDPTDAFLFGQIN----DGNAISMPYSKGFGWAAELNLQDVYRKLFDGERGLGYPRERAEIMRKN 173 (231)
T ss_dssp ECCSHHHHHHHHHHT----CCSEEEEESSTTCCTTHHHHHHHHHHHHHSSCCCCCSSGGGHHHHHHH
T ss_pred EeCCHHHHHHHHHhc----CccEEEECCceecccCHHHHHHHHHHHHHcCCcCCCCCchhhhHHHHH
Confidence 378889999999986 677788887 544 22222 345667889999998 7777665443
No 53
>3fnn_A TS, tsase, thymidylate synthase THYX; FAD, flavoprotein, methyltransferase, nucleotide biosynthesis, transferase; HET: FAD; 2.30A {Corynebacterium glutamicum} PDB: 3ge9_A
Probab=38.60 E-value=7.6 Score=28.05 Aligned_cols=17 Identities=6% Similarity=-0.064 Sum_probs=14.2
Q ss_pred ccchhhhhhhhcCCeEE
Q psy7990 3 SALFLSTQYWEHQGPGV 19 (76)
Q Consensus 3 ~t~~~ARQ~V~HgHI~V 19 (76)
++++.++||+.|++...
T Consensus 91 vSR~~~~QlvRHR~~S~ 107 (256)
T 3fnn_A 91 ISRSATHELVRHRHFSF 107 (256)
T ss_dssp EEHHHHHHHTTCTTSEE
T ss_pred cCHHHHHHHHhCCCCCe
Confidence 57899999999998643
No 54
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=37.40 E-value=17 Score=23.58 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=15.5
Q ss_pred hcCCeEECCEEeCccceeeecCCC
Q psy7990 13 EHQGPGVRKQVVNIPSFVVRLDSQ 36 (76)
Q Consensus 13 ~HgHI~Vng~~VniPSy~Vk~~de 36 (76)
+.|.|.|||++| -++.+..+|.
T Consensus 60 ~nGtVFVNGqrv--~~~~I~~gDt 81 (102)
T 3uv0_A 60 LVGKIFVNDQEE--TVVDIGMENA 81 (102)
T ss_dssp SSSCEEETTEEE--SEEEECGGGC
T ss_pred ccCcEEECCEEe--eeEEccCCcc
Confidence 357799999999 4555555543
No 55
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=36.79 E-value=13 Score=24.35 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=27.1
Q ss_pred Cccchhhhhhhhc-----CCeEECCEEeCccceeeecCCCCc
Q psy7990 2 CSALFLSTQYWEH-----QGPGVRKQVVNIPSFVVRLDSQKH 38 (76)
Q Consensus 2 ~~t~~~ARQ~V~H-----gHI~Vng~~VniPSy~Vk~~de~~ 38 (76)
|.++.+|+++... .-|+.+|..++ |+-.+.=|+|.+
T Consensus 122 v~dl~~A~~~~~~~~~~~r~VTldGdli~-~~G~~tGG~~~~ 162 (166)
T 3l51_B 122 ANNLDQATRVAYQRDRRWRVVTLQGQIIE-QSGTMSGGLEHH 162 (166)
T ss_dssp ESSHHHHHHHHBCSSCBCCEEETTSCEEC-TTCCEEECCGGG
T ss_pred ECCHHHHHHHHHhhCCCcEEEECCCEEEe-CCEEEECCCccc
Confidence 7899999997643 45777999988 776777776654
No 56
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=36.43 E-value=5.7 Score=20.27 Aligned_cols=17 Identities=12% Similarity=-0.071 Sum_probs=13.3
Q ss_pred cCCeEECCEEeCcccee
Q psy7990 14 HQGPGVRKQVVNIPSFV 30 (76)
Q Consensus 14 HgHI~Vng~~VniPSy~ 30 (76)
=|+|.+||+.+-+|-..
T Consensus 8 vGri~l~gkp~v~Pdre 24 (26)
T 2o8m_C 8 VGRIVLSGKPAIIPKKX 24 (26)
T ss_dssp EEEEECSCCCEECCCC-
T ss_pred EEEEEECCceEEcCCcC
Confidence 47899999999988643
No 57
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=31.64 E-value=6.4 Score=28.34 Aligned_cols=58 Identities=7% Similarity=-0.002 Sum_probs=41.0
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccce---eeecCCC--CceeeeeCCCCCCCC-cchhhhhhhhh
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPSF---VVRLDSQ--KHIDFSLNSPFGGGG-TGRVKRKNLRK 62 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPSy---~Vk~~de--~~I~~~~~SP~~~~~-pgR~krk~~~~ 62 (76)
.|...+.|+....|- |.+++.+|+- .+..+.- .-++-..++||.+++ ++|+-++...+
T Consensus 94 lc~d~~sA~laR~hN----nANVL~lG~rr~~~ig~elA~~~Ivd~fL~t~F~gGr~~~R~~~~~r~~ 157 (214)
T 3ono_A 94 YCLEPSDAFLFNQIN----NGNAISLAFAKGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQANA 157 (214)
T ss_dssp ECSSHHHHHHHHHHT----CCSEEEEESSTTCCTTHHHHHHHHHHHHSSSCCCCCSSGGGHHHHHHHH
T ss_pred EeCCHHHHHHHHHHc----CCcEEEecCcccccccHHHHHHHHHHHHHcCCcCCCCChhHHHHHHHHH
Confidence 378889999999986 6777888875 3333331 246777899999998 67766655544
No 58
>3gwc_A TS, tsase, thymidylate synthase THYX; FAD, fdump, flavoprotein, methyltransferase, nucleotid biosynthesis, transferase; HET: FAD UFP; 1.90A {Mycobacterium tuberculosis} PDB: 3hzg_A* 2af6_A* 2gq2_A*
Probab=31.59 E-value=13 Score=26.85 Aligned_cols=16 Identities=6% Similarity=-0.045 Sum_probs=13.7
Q ss_pred cchhhhhhhhcCCeEE
Q psy7990 4 ALFLSTQYWEHQGPGV 19 (76)
Q Consensus 4 t~~~ARQ~V~HgHI~V 19 (76)
+++.++||+.|++...
T Consensus 86 Sr~~~~QlvRHR~~S~ 101 (258)
T 3gwc_A 86 SRSCTHELIRHRHFSY 101 (258)
T ss_dssp EHHHHHHHTTCTTSEE
T ss_pred CHHHHHHHHHcCccch
Confidence 7889999999998654
No 59
>1f0l_A Diphtheria toxin; bacterial toxin, ADP-ribosylation, transmembrane; HET: APU; 1.55A {Corynebacterium diphtheriae} SCOP: b.2.1.1 d.166.1.1 f.1.2.1 PDB: 1ddt_A* 1mdt_A* 1sgk_A 1tox_A* 1xdt_T 4ae0_A 4ae1_A 1dtp_A*
Probab=31.56 E-value=38 Score=26.63 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=23.2
Q ss_pred hcCCeEECCEEeCccceeeecCCCCceeeeeCCCC
Q psy7990 13 EHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPF 47 (76)
Q Consensus 13 ~HgHI~Vng~~VniPSy~Vk~~de~~I~~~~~SP~ 47 (76)
+.-||.|||+++. ++++.=|-+-.--.+.||.
T Consensus 446 skthisvngrkir---mrcraidgdvtfcrpkspv 477 (535)
T 1f0l_A 446 SKTHISVNGRKIR---MRCRAIDGDVTFCRPKSPV 477 (535)
T ss_dssp TTCEEEETTEEEC---EEEEEETTTEEEEEESSCE
T ss_pred ccceEEecCeeeE---EEEeeecCceeeecCCCCe
Confidence 4569999999986 5677766665555677775
No 60
>1yzy_A Hypothetical protein HI1011; putative tRNA synthase, structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae} SCOP: c.146.1.1
Probab=27.75 E-value=20 Score=26.92 Aligned_cols=28 Identities=11% Similarity=-0.078 Sum_probs=25.1
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCccc
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNIPS 28 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~VniPS 28 (76)
.||.+++....+..||..|||+.++-+.
T Consensus 111 v~PAfP~~GR~t~~G~~~v~~~pl~et~ 138 (413)
T 1yzy_A 111 ITPALPVNGRTIFNGYLFVGDVLLSESG 138 (413)
T ss_dssp ECCCBGGGTEEEETTEEEETTEEGGGSG
T ss_pred EEccccCCCCEEECCEEEECCEEcCCCc
Confidence 4899999999999999999999988554
No 61
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=27.51 E-value=50 Score=19.40 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=21.0
Q ss_pred CeEECCEEeCccce-eeecCCCCceeeeeCCCCCCCC
Q psy7990 16 GPGVRKQVVNIPSF-VVRLDSQKHIDFSLNSPFGGGG 51 (76)
Q Consensus 16 HI~Vng~~VniPSy-~Vk~~de~~I~~~~~SP~~~~~ 51 (76)
-|.|||..|.-..| .....|-+.|++.. |.+|+.
T Consensus 36 AVavNg~iVpr~~~~~~~L~dGD~IEIv~--~VgGG~ 70 (78)
T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEFLY--FMGGGK 70 (78)
T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEECC--CCCCSC
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEEe--eecCCC
Confidence 48899999885533 13344555666654 666654
No 62
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=27.21 E-value=21 Score=26.32 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=19.1
Q ss_pred hhhhhhhh------cCCeEECCEEeCccce
Q psy7990 6 FLSTQYWE------HQGPGVRKQVVNIPSF 29 (76)
Q Consensus 6 ~~ARQ~V~------HgHI~Vng~~VniPSy 29 (76)
..||++|. -|-|.++|+.|+.|.|
T Consensus 274 ~~A~~il~a~~~~g~G~~~~dG~MvD~p~~ 303 (339)
T 3r4i_A 274 TTATEILLAAQSAQWGPTRYHDTLHDRASY 303 (339)
T ss_dssp HHHHHHHHHHHHTTTSCEEETTEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEECCEeecHHHH
Confidence 45777764 4889999999999975
No 63
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=26.10 E-value=40 Score=19.55 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=19.4
Q ss_pred CeEECCEEeCccce-eeecCCCCceeeeeCCCCCCC
Q psy7990 16 GPGVRKQVVNIPSF-VVRLDSQKHIDFSLNSPFGGG 50 (76)
Q Consensus 16 HI~Vng~~VniPSy-~Vk~~de~~I~~~~~SP~~~~ 50 (76)
-|.|||..|.-..| .....+-+.|++-. |.+|+
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veIv~--~VgGG 65 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEILT--PRQGG 65 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEEEC--CCCCC
T ss_pred EEEECCEECChHHcCcccCCCCCEEEEEc--cccCC
Confidence 37889998875433 23344455666664 55554
No 64
>3dqq_A Putative tRNA synthase; structural genomics, unknown function, center for structural genomics of infecti diseases; 2.70A {Salmonella typhimurium} SCOP: c.146.1.1
Probab=24.58 E-value=22 Score=26.82 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=23.0
Q ss_pred CCccchhhhhhhhcCCeEECCEEeCc
Q psy7990 1 MCSALFLSTQYWEHQGPGVRKQVVNI 26 (76)
Q Consensus 1 ~~~t~~~ARQ~V~HgHI~Vng~~Vni 26 (76)
+||..++....+..||..|||..++-
T Consensus 114 v~PAfP~~GR~t~~G~~~v~g~pl~e 139 (421)
T 3dqq_A 114 ISPALPVNGRTVYQGYLFVMNHLLAE 139 (421)
T ss_dssp EECCBGGGTEEEETTEEEETTEEGGG
T ss_pred EEcccccCCcEEECCEEEECCEEcCC
Confidence 48999999999999999999977664
No 65
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5
Probab=22.46 E-value=18 Score=25.44 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhhhhhhhc---------CCeEECCEEeCccce
Q psy7990 6 FLSTQYWEH---------QGPGVRKQVVNIPSF 29 (76)
Q Consensus 6 ~~ARQ~V~H---------gHI~Vng~~VniPSy 29 (76)
..||+++.- |-|.++|+.|+.|.+
T Consensus 241 ~~A~~il~a~~~a~~~g~g~~~~~g~mvD~p~~ 273 (284)
T 1sgj_A 241 ARARALLDAAAAAAQRGHGAFSFEGQMVDEPML 273 (284)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCEeecHHHH
Confidence 457777743 789999999999885
No 66
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha}
Probab=21.99 E-value=18 Score=26.59 Aligned_cols=24 Identities=0% Similarity=-0.119 Sum_probs=5.1
Q ss_pred hhhhhhhh------cCCeEECCEEeCccce
Q psy7990 6 FLSTQYWE------HQGPGVRKQVVNIPSF 29 (76)
Q Consensus 6 ~~ARQ~V~------HgHI~Vng~~VniPSy 29 (76)
..||++|. -|-|.++|+.|+.|.+
T Consensus 275 ~~A~~il~a~~~~g~G~~~~dG~MvD~p~~ 304 (332)
T 3qqw_A 275 EDAAGILVAAQDADWGPIQYKGELHDRATY 304 (332)
T ss_dssp HHHHCC----------------------CH
T ss_pred HHHHHHHHHHHhcCCccEeECCEeccHHHH
Confidence 45777773 3789999999999975
No 67
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=21.64 E-value=70 Score=20.16 Aligned_cols=29 Identities=10% Similarity=0.064 Sum_probs=23.9
Q ss_pred CeEECCEEeCccceeeecCCCCceeeeeC
Q psy7990 16 GPGVRKQVVNIPSFVVRLDSQKHIDFSLN 44 (76)
Q Consensus 16 HI~Vng~~VniPSy~Vk~~de~~I~~~~~ 44 (76)
.+.|||+.++.---.+++.|-+.|.|..+
T Consensus 70 ~~~vng~~~~~Ga~~~~v~dGD~i~~~~t 98 (101)
T 3u7z_A 70 CITKGGEQVNTSADQTPVSDGDAFELTLK 98 (101)
T ss_dssp EEEETTEECCSCGGGCBCCTTCEEEEEEE
T ss_pred EEEECCEEhhhchhheEecCCCEEEEEEe
Confidence 35899999998877888888889988764
Done!