RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7990
(76 letters)
>gnl|CDD|177783 PLN00189, PLN00189, 40S ribosomal protein S9; Provisional.
Length = 194
Score = 90.2 bits (224), Expect = 1e-24
Identities = 41/58 (70%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76
V KQ+VN+PSF+VR+DSQKHIDFSL SP GGG GRVKRKN KAAS EEDEE
Sbjct: 138 VGKQIVNVPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQ-KAASGGGDGDEEDEE 194
>gnl|CDD|185484 PTZ00155, PTZ00155, 40S ribosomal protein S9; Provisional.
Length = 181
Score = 81.7 bits (202), Expect = 2e-21
Identities = 29/46 (63%), Positives = 36/46 (78%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAA 64
V KQ+V+IPSF+VR+DS+KHIDF+ SPFG G GRVKRK + A
Sbjct: 136 VGKQIVDIPSFLVRVDSEKHIDFADTSPFGNGRPGRVKRKAAKAAK 181
>gnl|CDD|213577 TIGR01018, rpsD_arch, ribosomal protein S4(archaeal
type)/S9(eukaryote cytosolic type). This model finds
eukaryotic ribosomal protein S9 as well as archaeal
ribosomal protein S4 [Protein synthesis, Ribosomal
proteins: synthesis and modification].
Length = 162
Score = 54.4 bits (131), Expect = 6e-11
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFG 48
V + V PS++VR + +K IDF+ +SPF
Sbjct: 133 VDGRRVTSPSYIVRREEEKKIDFAPSSPFK 162
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins
[Translation, ribosomal structure and biogenesis].
Length = 205
Score = 32.3 bits (74), Expect = 0.012
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 19 VRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGGGTGRVKRKN 59
V + VNIPS++V + + SP + +
Sbjct: 123 VNGKRVNIPSYLVSPGDEISVREKSKSPIKIKEALELAAQR 163
>gnl|CDD|179730 PRK04051, rps4p, 30S ribosomal protein S4P; Validated.
Length = 177
Score = 29.8 bits (68), Expect = 0.065
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 22 QVVNIPSFVVRLDSQKHIDFSLNSPF 47
+ V PS++V ++ + ID+ SP
Sbjct: 135 RRVTSPSYLVSVEEEDLIDYYPTSPL 160
>gnl|CDD|225973 COG3440, COG3440, Predicted restriction endonuclease [Defense
mechanisms].
Length = 301
Score = 26.7 bits (59), Expect = 1.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 9 TQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSL 43
Q W GP ++K V+ P +++ D + H+D
Sbjct: 63 IQLWSFFGPKLQKYGVDAPFELLQGDGKWHLDIKE 97
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component,
dihydrolipoamide succinyltransferase. This model
represents an Actinobacterial clade of E2 enzyme, a
component of the 2-oxoglutarate dehydrogenase complex
involved in the TCA cycle. These proteins have multiple
domains including the catalytic domain (pfam00198), one
or two biotin domains (pfam00364) and an E3-component
binding domain (pfam02817).
Length = 579
Score = 25.7 bits (56), Expect = 2.5
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 30 VVRLDSQKHIDFSLNSPFGGGGTGRVKRKNLRKAASSATAPTE 72
V +L K +D L++ G G GR++++++ AA +A
Sbjct: 272 VRKLAKDKGVD--LSTVKGTGVGGRIRKQDVLAAAKAAEEARA 312
>gnl|CDD|99978 cd03806, GT1_ALG11_like, This family is most closely related to the
GT1 family of glycosyltransferases. ALG11 in yeast is
involved in adding the final 1,2-linked Man to the
Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of
the ER. The deletion analysis of ALG11 was shown to
block the early steps of core biosynthesis that takes
place on the cytoplasmic face of the ER and lead to a
defect in the assembly of lipid-linked oligosaccharides.
Length = 419
Score = 24.5 bits (54), Expect = 5.9
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 20 RKQVVNIPSFVVRLDSQKHIDFSLNSPF 47
K+V ++ L + ++F +N+PF
Sbjct: 288 EKRVEDLKLLAKELGLEDKVEFVVNAPF 315
>gnl|CDD|140267 PTZ00240, PTZ00240, 60S ribosomal protein P0; Provisional.
Length = 323
Score = 24.5 bits (53), Expect = 6.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 42 SLNSPFGGGGTGRVKRKNLRKAASSATAPTEEDEE 76
+L GGGG+ + AA+SA A EE+E
Sbjct: 278 ALEGLLGGGGSAAAEAAAAAPAAASAAAKEEEEES 312
>gnl|CDD|225953 COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin
PilY1 [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 1036
Score = 24.4 bits (53), Expect = 6.6
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 41 FSLNSPFGGGGTGRVKRKNLRKAASSATAPT 71
L+S F G + L + PT
Sbjct: 430 DYLSSFFDKNWAGELTAYQLDTDGTVTGVPT 460
>gnl|CDD|236851 PRK11114, PRK11114, cellulose synthase regulator protein;
Provisional.
Length = 756
Score = 24.5 bits (54), Expect = 7.2
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 7 LSTQYWEHQGPGVRKQVVNIPSFVVRLDSQKHIDFSLNSPFGGG 50
L + QG + V+IP+ + +Q DF +SP GG
Sbjct: 439 LRLRLPLLQGLLDGETDVSIPALKLGSRNQLRFDFDYDSPKTGG 482
>gnl|CDD|235411 PRK05327, rpsD, 30S ribosomal protein S4; Validated.
Length = 203
Score = 23.9 bits (53), Expect = 8.8
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 22 QVVNIPSFVVR 32
+ VNIPS+ V+
Sbjct: 125 KKVNIPSYRVK 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,768,667
Number of extensions: 279071
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 12
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)