RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7990
         (76 letters)



>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain
          {Thermus thermophilus HB8 [TaxId: 300852]}
          Length = 63

 Score = 22.6 bits (49), Expect = 3.0
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 27 PSFVVRLDSQKH--IDFSLNSPFGGGGTGRVKRKNLR 61
          P   V++D      +++       GG     K KNL 
Sbjct: 9  PGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLE 45


>d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2,
          SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 22.7 bits (48), Expect = 5.8
 Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 7/50 (14%)

Query: 7  LSTQYWEHQGPGVRKQVVNI------PSFVVRLDSQKHIDFSLNSPFGGG 50
          L    W   G     +           +F++R  S      +++     G
Sbjct: 12 LGQTGWYW-GSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLLTISVKTSAG 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 274,287
Number of extensions: 9829
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 2
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.3 bits)