Query psy7991
Match_columns 81
No_of_seqs 225 out of 1011
Neff 7.9
Searched_HMMs 29240
Date Sat Aug 17 00:01:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3i_A Histone H3 lysine 4 spe 99.9 1.9E-21 6.5E-26 131.7 11.8 74 7-81 12-87 (293)
2 1h3i_A Histone H3 lysine 4 spe 99.8 2.3E-20 7.7E-25 126.5 9.8 74 7-81 35-112 (293)
3 2f69_A Histone-lysine N-methyl 99.6 1.7E-16 5.7E-21 106.7 4.5 54 27-81 2-58 (261)
4 2f69_A Histone-lysine N-methyl 99.3 1.6E-12 5.4E-17 87.3 5.5 53 7-60 5-60 (261)
5 2eqj_A Metal-response element- 71.3 4.1 0.00014 21.7 2.8 38 18-55 22-59 (66)
6 2e5p_A Protein PHF1, PHD finge 55.7 9.7 0.00033 20.3 2.4 11 20-30 20-30 (68)
7 2xk0_A Polycomb protein PCL; t 51.4 24 0.00084 18.8 3.5 13 18-30 24-36 (69)
8 4hcz_A PHD finger protein 1; p 49.9 20 0.00067 18.5 2.9 11 20-30 14-24 (58)
9 2e5q_A PHD finger protein 19; 45.3 33 0.0011 17.9 4.0 12 19-30 17-28 (63)
10 2m0o_A PHD finger protein 1; t 45.1 10 0.00035 20.8 1.4 35 44-78 37-72 (79)
11 2xdp_A Lysine-specific demethy 36.9 64 0.0022 18.9 5.2 15 42-56 73-87 (123)
12 2qqr_A JMJC domain-containing 31.6 79 0.0027 18.4 5.4 13 43-55 73-85 (118)
No 1
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.87 E-value=1.9e-21 Score=131.74 Aligned_cols=74 Identities=18% Similarity=0.377 Sum_probs=64.6
Q ss_pred eEeCCeEEeEEEEcCCCCEEEEEEecCCeEEeeEEEEcCCCC-EEEEEEeCCeEEeeEEEEecCCCEEEEEEc-CCC
Q psy7991 7 EEYPGVVQHGSFKYDDGTLYIGDWNERGQKHGMGHMKLPDHT-RYDGTFHNGLCSGLGVMRFPDGAKAEMSSD-EVR 81 (81)
Q Consensus 7 ~~~~~~~g~G~~~~~~g~~Y~G~~~~~~~~~G~G~~~~~~G~-~y~G~~~~g~~~G~G~~~~~~G~~y~G~w~-~Gr 81 (81)
.....++|.|++.++||.+|+|+| +++++||.|++++++|. +|+|+|+++++||.|+++++||++|+|.|+ +|+
T Consensus 12 ~~~g~~~G~G~~~~~~G~~Y~G~~-~~g~~~G~G~~~~~~G~~~y~G~~~~g~~~G~G~~~~~~G~~y~G~~~~~g~ 87 (293)
T 1h3i_A 12 YVDDALQGQGVYTYEDGGVLQGTY-VDGELNGPAQEYDTDGRLIFKGQYKDNIRHGVCWIYYPDGGSLVGEVNEDGE 87 (293)
T ss_dssp EETTEEEEEEEEECTTSCEEEEEE-ETTEEEEEEEEECSSSCEEEEEEEETTEECSEEEEECTTSCEEEEECCTTSC
T ss_pred EECCEeeEEEEEEECCCCEEEEEE-ECCEEEeCEEEEECCCCEEEEEEEECCEEEeeEEEEECCCCEEEEEEeECCe
Confidence 334556789999999999999999 89999999999999999 899999999999999999999999999998 775
No 2
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.83 E-value=2.3e-20 Score=126.47 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=69.6
Q ss_pred eEeCCeEEeEEEEcCCCC-EEEEEEecCCeEEeeEEEEcCCCCEEEEEEe-CCeEEee-EEEEecCCC-EEEEEEcCCC
Q psy7991 7 EEYPGVVQHGSFKYDDGT-LYIGDWNERGQKHGMGHMKLPDHTRYDGTFH-NGLCSGL-GVMRFPDGA-KAEMSSDEVR 81 (81)
Q Consensus 7 ~~~~~~~g~G~~~~~~g~-~Y~G~~~~~~~~~G~G~~~~~~G~~y~G~~~-~g~~~G~-G~~~~~~G~-~y~G~w~~Gr 81 (81)
...+.++|.|++.++||. +|+|+| +++++||.|+++++||.+|+|+|+ ++++||. |+++++||. +|+|.|++|+
T Consensus 35 ~~~g~~~G~G~~~~~~G~~~y~G~~-~~g~~~G~G~~~~~~G~~y~G~~~~~g~~~G~gG~~~~~~G~~~y~G~~~~g~ 112 (293)
T 1h3i_A 35 YVDGELNGPAQEYDTDGRLIFKGQY-KDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGE 112 (293)
T ss_dssp EETTEEEEEEEEECSSSCEEEEEEE-ETTEECSEEEEECTTSCEEEEECCTTSCSCEEEEEEECTTSSEEEEEEEETTE
T ss_pred EECCEEEeCEEEEECCCCEEEEEEE-ECCEEEeeEEEEECCCCEEEEEEeECCeEeCCeEEEEECCCCEEEEEEEECCE
Confidence 345567899999999999 999999 999999999999999999999999 9999999 999999999 6999999985
No 3
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.63 E-value=1.7e-16 Score=106.69 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred EEEEecCCeEEeeEEEEcCCCCEEEEEEe-CCeEEee-EEEEecCCCE-EEEEEcCCC
Q psy7991 27 IGDWNERGQKHGMGHMKLPDHTRYDGTFH-NGLCSGL-GVMRFPDGAK-AEMSSDEVR 81 (81)
Q Consensus 27 ~G~~~~~~~~~G~G~~~~~~G~~y~G~~~-~g~~~G~-G~~~~~~G~~-y~G~w~~Gr 81 (81)
.|+| +++++||.|++++|||.+|+|+|. ++.+||. |+|+|||+.+ |+|.|++|+
T Consensus 2 ~g~~-~~~~~~G~g~~~~~dG~~y~G~~~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~ 58 (261)
T 2f69_A 2 AMGY-KDNIRHGVCWIYYPDGGSLVGEVNEDGEMTGEKIAYVYPDERTALYGKFIDGE 58 (261)
T ss_dssp ----------CCCEEEECTTSCEEEECCCTTSCCCEEEEEEECTTSSEEEEEEEETTE
T ss_pred Ccee-cCCceecceEEEeCCCCEEEEEEeeCCcCccceEEEEeCCCCEEEEEEEeCCc
Confidence 3789 899999999999999999999999 9999999 9999999988 999999874
No 4
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.33 E-value=1.6e-12 Score=87.32 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=45.3
Q ss_pred eEeCCeEEeEEEEcCCCCEEEEEEec-CCeEEee-EEEEcCCCCE-EEEEEeCCeEE
Q psy7991 7 EEYPGVVQHGSFKYDDGTLYIGDWNE-RGQKHGM-GHMKLPDHTR-YDGTFHNGLCS 60 (81)
Q Consensus 7 ~~~~~~~g~G~~~~~~g~~Y~G~~~~-~~~~~G~-G~~~~~~G~~-y~G~~~~g~~~ 60 (81)
-.++.++|.|++.|+||++|+|+| . ++.+||. |++++||+.. |+|+|+++.+-
T Consensus 5 ~~~~~~~G~g~~~~~dG~~y~G~~-~~~~~~~G~~g~y~y~d~~~~~~G~~~~g~~~ 60 (261)
T 2f69_A 5 YKDNIRHGVCWIYYPDGGSLVGEV-NEDGEMTGEKIAYVYPDERTALYGKFIDGEMI 60 (261)
T ss_dssp ------CCCEEEECTTSCEEEECC-CTTSCCCEEEEEEECTTSSEEEEEEEETTEEE
T ss_pred ecCCceecceEEEeCCCCEEEEEE-eeCCcCccceEEEEeCCCCEEEEEEEeCCcEe
Confidence 356778999999999999999999 9 9999999 9999999999 99999999764
No 5
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=71.34 E-value=4.1 Score=21.66 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=19.1
Q ss_pred EEcCCCCEEEEEEecCCeEEeeEEEEcCCCCEEEEEEe
Q psy7991 18 FKYDDGTLYIGDWNERGQKHGMGHMKLPDHTRYDGTFH 55 (81)
Q Consensus 18 ~~~~~g~~Y~G~~~~~~~~~G~G~~~~~~G~~y~G~~~ 55 (81)
..|.||..|.|...+-++..|...+.+.|++.+=-.|+
T Consensus 22 A~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~k 59 (66)
T 2eqj_A 22 ARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWK 59 (66)
T ss_dssp EECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred EEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEee
Confidence 34566666666652222233555555555555444433
No 6
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.71 E-value=9.7 Score=20.28 Aligned_cols=11 Identities=45% Similarity=1.014 Sum_probs=6.8
Q ss_pred cCCCCEEEEEE
Q psy7991 20 YDDGTLYIGDW 30 (81)
Q Consensus 20 ~~~g~~Y~G~~ 30 (81)
|+||..|-|..
T Consensus 20 WsDGlfYlGtV 30 (68)
T 2e5p_A 20 WTDGLLYLGTI 30 (68)
T ss_dssp CTTSSEEEEEE
T ss_pred ecCCcEEEeEE
Confidence 66666666655
No 7
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=51.36 E-value=24 Score=18.77 Aligned_cols=13 Identities=38% Similarity=0.882 Sum_probs=7.2
Q ss_pred EEcCCCCEEEEEE
Q psy7991 18 FKYDDGTLYIGDW 30 (81)
Q Consensus 18 ~~~~~g~~Y~G~~ 30 (81)
..|.||..|-|..
T Consensus 24 ~rw~DG~fYLGtI 36 (69)
T 2xk0_A 24 IKCNDGRFYLGTI 36 (69)
T ss_dssp EECTTSCEEEEEE
T ss_pred EEecCCCEEEEEE
Confidence 3455566666555
No 8
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=49.93 E-value=20 Score=18.52 Aligned_cols=11 Identities=45% Similarity=1.014 Sum_probs=6.0
Q ss_pred cCCCCEEEEEE
Q psy7991 20 YDDGTLYIGDW 30 (81)
Q Consensus 20 ~~~g~~Y~G~~ 30 (81)
|+||..|-|..
T Consensus 14 wsDG~fYlGtI 24 (58)
T 4hcz_A 14 WTDGLLYLGTI 24 (58)
T ss_dssp CTTSCEEEEEE
T ss_pred ecCCCEEeEEE
Confidence 55555555554
No 9
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.28 E-value=33 Score=17.94 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=6.7
Q ss_pred EcCCCCEEEEEE
Q psy7991 19 KYDDGTLYIGDW 30 (81)
Q Consensus 19 ~~~~g~~Y~G~~ 30 (81)
.|+||..|-|..
T Consensus 17 rWsDGlfYlgtV 28 (63)
T 2e5q_A 17 RWTDGLYYLGKI 28 (63)
T ss_dssp ECTTSCEEEEEE
T ss_pred EecCCCEEEEEE
Confidence 355555555555
No 10
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=45.14 E-value=10 Score=20.77 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=14.3
Q ss_pred cCCCCEEEEEEeC-CeEEeeEEEEecCCCEEEEEEc
Q psy7991 44 LPDHTRYDGTFHN-GLCSGLGVMRFPDGAKAEMSSD 78 (81)
Q Consensus 44 ~~~G~~y~G~~~~-g~~~G~G~~~~~~G~~y~G~w~ 78 (81)
|.||..|-|.... +.........|.|++.+--.|+
T Consensus 37 wsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~k 72 (79)
T 2m0o_A 37 WTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWK 72 (79)
T ss_dssp CTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEee
Confidence 4444444444432 1112233444445544444443
No 11
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=36.89 E-value=64 Score=18.94 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=8.5
Q ss_pred EEcCCCCEEEEEEeC
Q psy7991 42 MKLPDHTRYDGTFHN 56 (81)
Q Consensus 42 ~~~~~G~~y~G~~~~ 56 (81)
+.|+||..|.+.|..
T Consensus 73 V~W~DG~~y~a~f~g 87 (123)
T 2xdp_A 73 VKWPDGKLYGAKYFG 87 (123)
T ss_dssp EECTTSCEEEEEEEE
T ss_pred EEcCCCCEEeEEEee
Confidence 445666666665554
No 12
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=31.62 E-value=79 Score=18.41 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=6.4
Q ss_pred EcCCCCEEEEEEe
Q psy7991 43 KLPDHTRYDGTFH 55 (81)
Q Consensus 43 ~~~~G~~y~G~~~ 55 (81)
.|.||..|.+.|.
T Consensus 73 ~W~DG~~y~a~f~ 85 (118)
T 2qqr_A 73 RWTDGQVYGAKFV 85 (118)
T ss_dssp ECTTSCEEEEEEE
T ss_pred EcCCCCEeeeEEe
Confidence 3445555555544
Done!