RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7991
         (81 letters)



>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor
          complex p62 subunit (BTF2-p62), N-terminal domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 108

 Score = 23.6 bits (51), Expect = 2.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 6  EEEYPGVVQHGSFKYDDGTLYI 27
           EE   +V+    K  DG LY+
Sbjct: 5  SEEVLLIVKKVRQKKQDGALYL 26


>d1elva2 g.18.1.1 (A:342-409) Complement C1S protease domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 68

 Score = 23.1 bits (49), Expect = 2.8
 Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 10 PGVVQHGSFKYDDGTLYIGDWNERGQKHGMGHMKL 44
          P  +++G  +  + TL+ G       +    +M+ 
Sbjct: 6  PESIENGKVEDPESTLF-GSVIRYTCEEPYYYMEN 39


>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 562

 Score = 24.0 bits (52), Expect = 3.0
 Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 4/26 (15%)

Query: 34  GQKHGMGHMKLPDHTRYDGTFHNGLC 59
           G           +   +DG  H G+ 
Sbjct: 434 GANTAST----TNMRIFDGALHAGIL 455


>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 229

 Score = 23.1 bits (48), Expect = 4.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 19 KYDDGTLYIGDWNERGQKHGMGHMKLPDHTRYDG 52
             DG L +G+  +   KHG+  + + DH     
Sbjct: 13 NMSDGHLPLGEVVDLFGKHGVDVVSITDHIVDRR 46


>d1sp8a2 d.32.1.3 (A:208-431) 4-hydroxyphenylpyruvate dioxygenase,
           HppD {Corn (Zea mays) [TaxId: 4577]}
          Length = 224

 Score = 22.4 bits (47), Expect = 9.5
 Identities = 11/46 (23%), Positives = 15/46 (32%)

Query: 6   EEEYPGVVQHGSFKYDDGTLYIGDWNERGQKHGMGHMKLPDHTRYD 51
           +      VQH +   DD    + +   R    G   M  P    YD
Sbjct: 85  DHHGGPGVQHMALASDDVLRTLREMQARSAMGGFEFMAPPTSDYYD 130


>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 467

 Score = 22.3 bits (47), Expect = 9.8
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 6   EEEYPGVVQHGSFKYDDGTLYIGDWNERGQKHGMGHMK 43
            +    +  H   K   G  YI +W     +H MGH+ 
Sbjct: 263 FDAVQAIETHLIRKSSGGLTYIAEWKGGLLEHKMGHLT 300


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,781
Number of extensions: 14001
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 11
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)