BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7992
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55935|RS9_DROME 40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=2
SV=2
Length = 195
Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/136 (90%), Positives = 127/136 (93%), Gaps = 5/136 (3%)
Query: 1 MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
MVN R+PSV SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE
Sbjct: 1 MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
Query: 61 LLTLDEKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGL 115
LLTLDEK+ + NALLRRLVRIGVLDES+MKLDYV GLKIEDFLERRLQTQVFKLGL
Sbjct: 61 LLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGL 120
Query: 116 AKSIHHARVLIRQRHI 131
AKSIHHARVLIRQRHI
Sbjct: 121 AKSIHHARVLIRQRHI 136
>sp|P29314|RS9_RAT 40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4
Length = 194
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 117/128 (91%), Gaps = 5/128 (3%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 HR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
R NALLRRLVRIGVLDE KMKLDY+ GLKIEDFLERRLQTQVFKLGLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 124 VLIRQRHI 131
VLIRQRHI
Sbjct: 128 VLIRQRHI 135
>sp|A9L913|RS9_PAPAN 40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1
Length = 194
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 117/128 (91%), Gaps = 5/128 (3%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 HR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
R NALLRRLVRIGVLDE KMKLDY+ GLKIEDFLERRLQTQVFKLGLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 124 VLIRQRHI 131
VLIRQRHI
Sbjct: 128 VLIRQRHI 135
>sp|Q6ZWN5|RS9_MOUSE 40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3
Length = 194
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 117/128 (91%), Gaps = 5/128 (3%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 HR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
R NALLRRLVRIGVLDE KMKLDY+ GLKIEDFLERRLQTQVFKLGLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 124 VLIRQRHI 131
VLIRQRHI
Sbjct: 128 VLIRQRHI 135
>sp|P46781|RS9_HUMAN 40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3
Length = 194
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 117/128 (91%), Gaps = 5/128 (3%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 HR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
R NALLRRLVRIGVLDE KMKLDY+ GLKIEDFLERRLQTQVFKLGLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 124 VLIRQRHI 131
VLIRQRHI
Sbjct: 128 VLIRQRHI 135
>sp|A6QLG5|RS9_BOVIN 40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1
Length = 194
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/128 (86%), Positives = 117/128 (91%), Gaps = 5/128 (3%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 69 HR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
R NALLRRLVRIGVLDE KMKLDY+ GLKIEDFLERRLQTQVFKLGLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 124 VLIRQRHI 131
VLIRQRHI
Sbjct: 128 VLIRQRHI 135
>sp|Q29197|RS9_PIG 40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1
Length = 130
Score = 205 bits (521), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/125 (84%), Positives = 112/125 (89%), Gaps = 5/125 (4%)
Query: 9 VHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE 68
V KTYVTPRRP+EK+RLDQELK+IGEYGLRNKREVWRVK+ LAKIRKAARELLTLDEK+
Sbjct: 6 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 65
Query: 69 HR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
R NALLRRLVRIGVLDE KMKLDY+ GLKIEDFLERRLQTQVFKLGLA SIHH R
Sbjct: 66 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXR 125
Query: 124 VLIRQ 128
VLIRQ
Sbjct: 126 VLIRQ 130
>sp|Q20228|RS9_CAEEL 40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=3
SV=1
Length = 189
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 99/132 (75%), Positives = 116/132 (87%), Gaps = 5/132 (3%)
Query: 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
R+ +V SK +PRRP+EK RLDQELK+IG +GL+NKREVWRVKY LAK+RKAARELLTL
Sbjct: 3 RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62
Query: 65 DEKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSI 119
++K+ + NALLRRLV+IGVLDE+KMKLDYV GLK+EDFLERRLQTQVFKLGLAKSI
Sbjct: 63 EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122
Query: 120 HHARVLIRQRHI 131
HHAR+LI+Q HI
Sbjct: 123 HHARILIKQHHI 134
>sp|P52810|RS9_PODAS 40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1
Length = 190
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 110/131 (83%), Gaps = 5/131 (3%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
P +SKT PRRP+E ARLD ELK++GEYGLRNKREVWRV L+KIR+AARELLTLD
Sbjct: 2 APRSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLD 61
Query: 66 EKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIH 120
EK+ + NAL+RRLVR+GVLDES+MKLDYV LK EDFLERRLQT V+KLGLAKSIH
Sbjct: 62 EKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIH 121
Query: 121 HARVLIRQRHI 131
HARVLIRQRHI
Sbjct: 122 HARVLIRQRHI 132
>sp|O59675|RS9B_SCHPO 40S ribosomal protein S9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9b PE=1 SV=3
Length = 192
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 96/131 (73%), Positives = 109/131 (83%), Gaps = 5/131 (3%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
P SKTY PRRP+E ARLD ELK+ GEYGLRNK E+WRV L+KIR+AARELLTLD
Sbjct: 4 APRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLD 63
Query: 66 EKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIH 120
EK+ + NA++RRLVR+G+LDES+MKLDYV L+IEDFLERRLQTQVFKLGLAKSIH
Sbjct: 64 EKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIH 123
Query: 121 HARVLIRQRHI 131
HARVLI QRHI
Sbjct: 124 HARVLIFQRHI 134
>sp|Q09757|RS9A_SCHPO 40S ribosomal protein S9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rps9a PE=1 SV=2
Length = 191
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 109/131 (83%), Gaps = 5/131 (3%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
P SKTY PRRP+E ARLD ELK+ GEYGLRNK E+WRV L+KIR+AARELLTLD
Sbjct: 4 APRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLD 63
Query: 66 EKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIH 120
EK+ + NA++RRLVR+G+LDE++MKLDYV L+IEDFLERRLQTQVFKLGLAKSIH
Sbjct: 64 EKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIH 123
Query: 121 HARVLIRQRHI 131
HARVLI QRHI
Sbjct: 124 HARVLIFQRHI 134
>sp|P05755|RS9B_YEAST 40S ribosomal protein S9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9B PE=1 SV=4
Length = 195
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/132 (68%), Positives = 110/132 (83%), Gaps = 5/132 (3%)
Query: 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
R P +SKTY TP+RPYE +RLD ELK+ GE+GL+NKRE++R+ + L+KIR+AAR+LLT
Sbjct: 3 RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKREIYRISFQLSKIRRAARDLLTR 62
Query: 65 DEKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSI 119
DEK+ + NAL+RRLVR+GVL E K KLDYV LK+EDFLERRLQTQV+KLGLAKS+
Sbjct: 63 DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSV 122
Query: 120 HHARVLIRQRHI 131
HHARVLI QRHI
Sbjct: 123 HHARVLITQRHI 134
>sp|O13516|RS9A_YEAST 40S ribosomal protein S9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS9A PE=1 SV=3
Length = 197
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 89/132 (67%), Positives = 110/132 (83%), Gaps = 5/132 (3%)
Query: 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
R P +SKTY TP+RPYE +RLD ELK+ GE+GL+NK+E++R+ + L+KIR+AAR+LLT
Sbjct: 3 RAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTR 62
Query: 65 DEKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSI 119
DEK+ + NAL+RRLVR+GVL E K KLDYV LK+EDFLERRLQTQV+KLGLAKS+
Sbjct: 63 DEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSV 122
Query: 120 HHARVLIRQRHI 131
HHARVLI QRHI
Sbjct: 123 HHARVLITQRHI 134
>sp|P14132|RS9_DICDI 40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=1
SV=1
Length = 185
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 89/131 (67%), Positives = 110/131 (83%), Gaps = 5/131 (3%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
+ S +SKT TPRRP+EK R+D ELK++GE+GL+NK EVWRV+YALAKIRKAARELL LD
Sbjct: 1 MSSNYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLD 60
Query: 66 EKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIH 120
EK+ + +ALLRRL ++GV++ESK KLDY+ LK++DF+ERRLQT VFK GLAKSIH
Sbjct: 61 EKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIH 120
Query: 121 HARVLIRQRHI 131
HARVLI+ RHI
Sbjct: 121 HARVLIKGRHI 131
>sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2
SV=1
Length = 197
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 107/136 (78%), Gaps = 5/136 (3%)
Query: 1 MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
MVN R + KT+ PRRPYEK RLD ELK++GEYGLR KRE+WRV+Y L++IR AARE
Sbjct: 1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60
Query: 61 LLTLDEKEHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGL 115
LLTLDEK R ALLRR+ R G+LDE++ KLDYV L +E+FLERRLQT VFK G+
Sbjct: 61 LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120
Query: 116 AKSIHHARVLIRQRHI 131
AKSIHHARVLIRQRHI
Sbjct: 121 AKSIHHARVLIRQRHI 136
>sp|Q9LXG1|RS91_ARATH 40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1
SV=1
Length = 198
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 105/127 (82%), Gaps = 5/127 (3%)
Query: 10 HSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEH 69
+ KT+ PRRPYEK RLD ELK++GEYGLRNKRE+WRV+Y+L++IR AAR+LLTLDEK
Sbjct: 10 YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69
Query: 70 R-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARV 124
R ALLRR+ R G+LDES+ KLDYV L +E+FLERRLQT VFK G+AKSIHH+RV
Sbjct: 70 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129
Query: 125 LIRQRHI 131
LIRQRHI
Sbjct: 130 LIRQRHI 136
>sp|Q25555|RS9_NAEFO 40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1
Length = 186
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 104/136 (76%), Gaps = 5/136 (3%)
Query: 1 MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARE 60
MV NR VHSK + PRRP+EK R+D+ELK+ G+YGL+NK+E+WR++Y LA+ RK AR
Sbjct: 1 MVQNRCYRVHSKVSLPPRRPFEKERMDRELKMCGKYGLKNKQEIWRLQYYLARARKTARH 60
Query: 61 LLTLDEKEHRN-----ALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGL 115
LLTL E + + ALLRR+ R+G+LDESK +LDY+ LK ED LERRLQT V KLGL
Sbjct: 61 LLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGL 120
Query: 116 AKSIHHARVLIRQRHI 131
+KSIHHAR LI QRHI
Sbjct: 121 SKSIHHARQLIFQRHI 136
>sp|P17959|RS9_TRYBB Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3
SV=1
Length = 190
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 92/126 (73%), Gaps = 5/126 (3%)
Query: 11 SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEHR 70
++ + PRRP+EK RLD+E+K+ G+YGLR KRE+WRV L+K+R+ AR LLTL E R
Sbjct: 8 NRVWKAPRRPFEKERLDREMKLCGQYGLRCKREIWRVNMTLSKMRRTARLLLTLPENHPR 67
Query: 71 -----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 125
+A++RR G LDE K KLDYV L + D LERRLQT VFK GLAKS+HH+RVL
Sbjct: 68 RLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVL 127
Query: 126 IRQRHI 131
I+QRHI
Sbjct: 128 IQQRHI 133
>sp|O15612|RS9_ENTHI 40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2
SV=2
Length = 185
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 88/127 (69%), Gaps = 5/127 (3%)
Query: 10 HSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEH 69
HS TY TP+ PYE+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L D K+
Sbjct: 8 HSITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDP 67
Query: 70 RN-----ALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARV 124
+ ALLRRL +G+L + KL++V LK E+ LERRLQT V++ G AKSIHHARV
Sbjct: 68 KRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARV 127
Query: 125 LIRQRHI 131
LIR + I
Sbjct: 128 LIRGKMI 134
>sp|O28000|RS4_ARCFU 30S ribosomal protein S4 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps4 PE=3 SV=1
Length = 172
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 87/134 (64%), Gaps = 10/134 (7%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLT--- 63
P H K Y TP P++KARL++E++++ +YGLRNKRE+WR + L K R+ AR+LL
Sbjct: 4 PKRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIG 63
Query: 64 LDEKEHRNA------LLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAK 117
L KE A ++++L ++G+L E+ LD + L +EDFLERRLQT V++ GLA+
Sbjct: 64 LPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLAR 122
Query: 118 SIHHARVLIRQRHI 131
+I AR I HI
Sbjct: 123 TIKQARQFITHGHI 136
>sp|A3DMQ4|RS4_STAMF 30S ribosomal protein S4 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rps4 PE=3 SV=1
Length = 168
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 82/128 (64%), Gaps = 4/128 (3%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + PR P+ K L QELK++G YGLRNKRE+WR + + K R AR LL +
Sbjct: 4 PKKPRKKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAAPQ 63
Query: 67 ---KEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
++ ALL RL R+G+L E+ L+ V GL +ED LERRLQT V+K GLA++I+HAR
Sbjct: 64 EIREQAEKALLNRLYRLGLLHEN-ASLEDVLGLTVEDLLERRLQTIVYKKGLARTIYHAR 122
Query: 124 VLIRQRHI 131
LI HI
Sbjct: 123 QLIIHGHI 130
>sp|A8A8W3|RS4_IGNH4 30S ribosomal protein S4 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rps4 PE=3 SV=1
Length = 166
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 83/129 (64%), Gaps = 6/129 (4%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD- 65
P K + P P+ K RL +E+K++GEYGLRNKRE+W L + R ARELL L
Sbjct: 4 PRKPRKKWSPPGHPWVKERLIEEMKLMGEYGLRNKREIWIAAAMLRRYRHRARELLALPA 63
Query: 66 ---EKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHA 122
EKE + ALL+RL +G++DE+ LD V L + D LERRLQT V+K GLAKSI+HA
Sbjct: 64 EVREKEEK-ALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHA 121
Query: 123 RVLIRQRHI 131
R L+ HI
Sbjct: 122 RQLVTHGHI 130
>sp|Q2FT97|RS4_METHJ 30S ribosomal protein S4 OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rps4 PE=3 SV=1
Length = 181
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P + K Y TP+RP+E +R+++E +++ EYGLRNKREVW K AL K RKAARE++ L
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 67 KEHRNA--------LLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKS 118
A L+ L R G+L E+ +D V LK+E L+RRLQTQV++ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSEN-ADIDDVLALKVEQQLDRRLQTQVYRRGFARS 122
Query: 119 IHHARVLIRQRHI 131
AR I HI
Sbjct: 123 PKQARQFITHGHI 135
>sp|B8GEG7|RS4_METPE 30S ribosomal protein S4 OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=rps4 PE=3 SV=1
Length = 181
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL-- 64
P ++K Y P+RP+EK R++ E +I+ EYGLRNKREVWR + L + RKAARELL
Sbjct: 4 PGKNTKGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMS 63
Query: 65 ---DEKE---HRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKS 118
DE++ + LL L RIG+L + V LKI+ LERRLQT V++ GLA+S
Sbjct: 64 QSSDEQQIATKKEHLLGHLNRIGLLGPD-ADIGDVLSLKIQQPLERRLQTMVYRQGLARS 122
Query: 119 IHHARVLIRQRHI 131
AR ++ HI
Sbjct: 123 PKQARQMVTHGHI 135
>sp|A7IAH7|RS4_METB6 30S ribosomal protein S4 OS=Methanoregula boonei (strain 6A8)
GN=rps4 PE=3 SV=1
Length = 185
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P + K+Y TP+RP+EK R+++E +++ EYGLRNKREVW+ + L K RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 67 --------KEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKS 118
+ ++ L+ + R G+L +D V LK+ LERRLQT V++ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLGPD-ADIDNVLALKVPAQLERRLQTLVYRKGLARS 122
Query: 119 IHHARVLIRQRHI 131
AR L+ HI
Sbjct: 123 PKQARQLVTHGHI 135
>sp|A1RWT8|RS4_THEPD 30S ribosomal protein S4 OS=Thermofilum pendens (strain Hrk 5)
GN=rps4 PE=3 SV=1
Length = 172
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + P P+ K L +E++++GEYGLRNKRE+W K L +IR AR+LL L
Sbjct: 4 PKKPRKKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPA 63
Query: 67 KEH---RNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
+E L+ RL ++G+L LD V L + D LERRLQT V++ GLA +I HAR
Sbjct: 64 EERIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHAR 123
Query: 124 VLIRQRHI 131
LI HI
Sbjct: 124 QLITHGHI 131
>sp|Q46GC8|RS4_METBF 30S ribosomal protein S4 OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=rps4 PE=3 SV=1
Length = 216
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 12/136 (8%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD- 65
P SK++ TPR P+++AR+ E++++ YGLRNKREVW+ L R AR LL
Sbjct: 4 PGKKSKSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAA 63
Query: 66 ----------EKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGL 115
+K +L +L+R G++ +S +D + LK E+ LERRLQTQV +LGL
Sbjct: 64 NSQERGLEGHQKTQSEEILAKLIRYGII-KSDADIDDILSLKTENILERRLQTQVLRLGL 122
Query: 116 AKSIHHARVLIRQRHI 131
A+++ AR I HI
Sbjct: 123 ARTVVQARQFITHGHI 138
>sp|Q9HJD7|RS4_THEAC 30S ribosomal protein S4 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps4 PE=3 SV=1
Length = 199
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 7/131 (5%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P H K Y TPR P+EK R+D+E KI+ +YGL+NK+E+WR + L+ IR AR+L
Sbjct: 4 PKFHHKKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLR 63
Query: 67 KEHRNA------LLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIH 120
NA +++RL R +L E+ LD V L +E+ L+RRLQT VF+ LA S+
Sbjct: 64 TNDVNAQKQLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVR 122
Query: 121 HARVLIRQRHI 131
AR LI HI
Sbjct: 123 QARQLITHGHI 133
>sp|Q97B95|RS4_THEVO 30S ribosomal protein S4 OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rps4
PE=3 SV=1
Length = 200
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 77/131 (58%), Gaps = 7/131 (5%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P H K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 67 KEHRNA------LLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIH 120
NA +++RL R +L + K LD V L +E+ L+RRLQT VFK LA S
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSD-KATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122
Query: 121 HARVLIRQRHI 131
AR LI HI
Sbjct: 123 QARQLITHGHI 133
>sp|A0B9L2|RS4_METTP 30S ribosomal protein S4 OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rps4 PE=3 SV=1
Length = 183
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 77/131 (58%), Gaps = 7/131 (5%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P KTY PR+P+E R+ E+++I YGLRNKRE+W+ + L K R+ R LL
Sbjct: 4 PGKSHKTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKA 63
Query: 67 K-EHR-----NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIH 120
+ E R A++ RL R G+L + LD + LKI D LERRLQTQV++ GLA +I
Sbjct: 64 RGEARADIEAAAVINRLSRFGILKDG-ADLDAILSLKITDILERRLQTQVYRQGLANTIR 122
Query: 121 HARVLIRQRHI 131
AR I HI
Sbjct: 123 QARQFITHGHI 133
>sp|Q8TRR1|RS4_METAC 30S ribosomal protein S4 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=rps4 PE=3 SV=1
Length = 218
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 78/136 (57%), Gaps = 12/136 (8%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P SK+Y TP+ P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPKHPWQEARMATEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAHVA 63
Query: 67 KEHRNAL-----------LRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGL 115
L L +L+R G++ +S +D + LK E+ LERRLQTQV +LGL
Sbjct: 64 SGQEGGLEGHYRTQSEEILSKLIRYGII-KSDANIDDILSLKTENILERRLQTQVLRLGL 122
Query: 116 AKSIHHARVLIRQRHI 131
A+++ AR I HI
Sbjct: 123 ARTVIQARQFITHGHI 138
>sp|Q8SRW6|RS9_ENCCU 40S ribosomal protein S9 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPS9 PE=1 SV=1
Length = 184
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 11 SKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKE-- 68
SK TPR P+EK RL +E +++G YGL+NK E+W ++ AK ++ AR LLT E
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 69 --HRNALLRRLVRIGVLD--------ESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKS 118
+ +LLRRL++ G+L E L+ V L I +LERRLQ +VF GLAKS
Sbjct: 67 PINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKS 126
Query: 119 IHHARVLIRQRHI 131
+HHAR+LI R I
Sbjct: 127 VHHARLLIGGRCI 139
>sp|A2BK77|RS4_HYPBU 30S ribosomal protein S4 OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=rps4 PE=3 SV=1
Length = 176
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 6/129 (4%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD- 65
P K ++ P+ P+ K RL +EL+++G YGLRNKRE+W+++ R AR LL L
Sbjct: 4 PKKPRKKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPP 63
Query: 66 ---EKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHA 122
EKE + ALL RL +GVL E+ LD V L E FLERRLQT V+K GLA++I+ A
Sbjct: 64 EVREKEEK-ALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEA 121
Query: 123 RVLIRQRHI 131
R LI HI
Sbjct: 122 RQLIVHGHI 130
>sp|Q8TVC0|RS4_METKA 30S ribosomal protein S4 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rps4 PE=3 SV=1
Length = 186
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 5/130 (3%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K Y TPR P+E RL+ E K++ +YGLR K+E+WR + L + R+ A+EL+ +
Sbjct: 4 PKRPRKKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTD 63
Query: 67 KE---HRNALLRRLVRIGVLDE--SKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHH 121
E R AL R+L +G+LD+ + LD + L +ED LERRLQT V++ GLAK+
Sbjct: 64 PEAQREREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQ 123
Query: 122 ARVLIRQRHI 131
AR L+ RHI
Sbjct: 124 ARQLVVHRHI 133
>sp|Q8PV18|RS4_METMA 30S ribosomal protein S4 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rps4 PE=3 SV=1
Length = 219
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 80/137 (58%), Gaps = 13/137 (9%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL-- 64
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 65 ---DEKE-------HRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLG 114
E E +L +L+R G++ ++ +D + LK E+ LERRLQTQV +LG
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLG 122
Query: 115 LAKSIHHARVLIRQRHI 131
LA+++ AR I HI
Sbjct: 123 LARTVIQARQFITHGHI 139
>sp|P39467|RS4_SULAC 30S ribosomal protein S4 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rps4 PE=3 SV=3
Length = 176
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 78/129 (60%), Gaps = 5/129 (3%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K ++ P P+ K L +E +IG+YGLRNK+E+W + + R AR LL L
Sbjct: 4 PRKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPP 63
Query: 67 KEHRN----ALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHA 122
E RN L+++L R+G+L++ LD + L E++LERRLQT V+K GLA++I+ A
Sbjct: 64 AE-RNIREKQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQA 122
Query: 123 RVLIRQRHI 131
R LI HI
Sbjct: 123 RQLITHGHI 131
>sp|A2SSV9|RS4_METLZ 30S ribosomal protein S4 OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=rps4 PE=3 SV=1
Length = 181
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P ++K Y +P+R +EK+R++ E + YGLRNKRE+WR L K R ARE+L +
Sbjct: 4 PGKNTKQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTS 63
Query: 67 K--------EHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKS 118
R+ L+ L R G+L +D + LK+ED LERRLQT V++ GLA+S
Sbjct: 64 SIGEAPKTIARRDELVGTLQRYGLLG-PDAAMDNILSLKVEDILERRLQTIVYRKGLARS 122
Query: 119 IHHARVLIRQRHI 131
AR LI HI
Sbjct: 123 PKQARQLITHGHI 135
>sp|Q96YV8|RS4_SULTO 30S ribosomal protein S4 OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=rps4 PE=3 SV=1
Length = 177
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P + + P P+ + L++E +IG+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 67 KEHRN---ALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
E L+++L R+G++++ LD + GL E++LERRLQT V+K GLA++I+ AR
Sbjct: 64 AERSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQAR 123
Query: 124 VLIRQRHI 131
LI HI
Sbjct: 124 QLIVHGHI 131
>sp|Q9YB58|RS4_AERPE 30S ribosomal protein S4 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps4 PE=3
SV=2
Length = 171
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + P+ P+ K RL++E +++G YGLRNK+E+W+ + + R AR LL L
Sbjct: 4 PRKPRKKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPP 63
Query: 67 KEHRNA---LLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
+ R A L+ L R+G++D + +D V G+ E LERRLQT V+K GLAK+I+ AR
Sbjct: 64 EVRREASRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQAR 123
Query: 124 VLIRQRHI 131
L+ HI
Sbjct: 124 QLVVHGHI 131
>sp|Q12ZR5|RS4_METBU 30S ribosomal protein S4 OS=Methanococcoides burtonii (strain DSM
6242) GN=rps4 PE=3 SV=1
Length = 184
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 9/133 (6%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD- 65
P +K+Y TP+ P++ R+ E++++ +YGLRNKRE+W+ L + R AR LL
Sbjct: 4 PGKSTKSYDTPQHPWQAERMASEVELVKKYGLRNKRELWKSLSVLRRFRGDARRLLAESA 63
Query: 66 -------EKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKS 118
K + LL +L+R +L +S +D V GL+ E LERRLQTQV +LGLA++
Sbjct: 64 ESDLIGHSKTEADQLLTKLIRFSIL-KSDSNIDDVLGLQTEAILERRLQTQVHRLGLART 122
Query: 119 IHHARVLIRQRHI 131
AR I HI
Sbjct: 123 ARQARQFITHGHI 135
>sp|Q9HQJ6|RS4_HALSA 30S ribosomal protein S4 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps4 PE=3 SV=1
Length = 170
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
+P ++K Y TP PY+ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLLGQT 62
Query: 66 EKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 125
+ RL RIG+L E + +LD V L++ D LERRLQT V++ GLA ++ AR
Sbjct: 63 GTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQF 121
Query: 126 IRQRHI 131
+ H+
Sbjct: 122 VSHGHV 127
>sp|B0R4Y0|RS4_HALS3 30S ribosomal protein S4 OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=rps4 PE=3 SV=1
Length = 170
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 73/126 (57%), Gaps = 1/126 (0%)
Query: 6 VPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLD 65
+P ++K Y TP PY+ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLLGQT 62
Query: 66 EKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVL 125
+ RL RIG+L E + +LD V L++ D LERRLQT V++ GLA ++ AR
Sbjct: 63 GTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQF 121
Query: 126 IRQRHI 131
+ H+
Sbjct: 122 VSHGHV 127
>sp|Q0W1V5|RS4_UNCMA 30S ribosomal protein S4 OS=Uncultured methanogenic archaeon RC-I
GN=rps4 PE=3 SV=1
Length = 205
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 11/135 (8%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELL---- 62
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L K R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 63 --TLDEKEH--RNA--LLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLA 116
L E H R+A ++++L +G+L E KL+ V LK++D +ERRLQT +++ G A
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKED-AKLEDVLALKVDDIMERRLQTIIYRKGFA 122
Query: 117 KSIHHARVLIRQRHI 131
SI AR I HI
Sbjct: 123 NSIKQARQFIVHGHI 137
>sp|A3CWH7|RS4_METMJ 30S ribosomal protein S4 OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=rps4 PE=3 SV=1
Length = 182
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 9/133 (6%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL-- 64
P + K Y TP+R +EK RL+ E ++I +YGLRNKRE+W+ + L K R AREL+ L
Sbjct: 4 PGKNHKQYATPKRRFEKTRLEDEKRLIIDYGLRNKRELWKAQSVLRKYRAGARELVALRS 63
Query: 65 ------DEKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKS 118
D + R+ L+ L R G++ E+ D V LK+E L+RRLQT V + G A+S
Sbjct: 64 GGLSTEDYLKKRDQLVNHLYRYGLVGENADVGD-VLALKVEQQLDRRLQTLVLRRGFARS 122
Query: 119 IHHARVLIRQRHI 131
AR I HI
Sbjct: 123 PKQARQFITHGHI 135
>sp|A8MDS5|RS4_CALMQ 30S ribosomal protein S4 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=rps4 PE=3
SV=1
Length = 181
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 9/132 (6%)
Query: 7 PSVHSKTYVT--PRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTL 64
P K YV P+R + L EL++IGEYGLRNK+E+W + L I+ ARE+L+
Sbjct: 4 PKRPKKKYVEGKPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSA 63
Query: 65 -----DEKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSI 119
E E R L RL R+G++ + + LD V L + LERRLQT V++ G+A+SI
Sbjct: 64 PMEIRGEAEKR--LKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSI 121
Query: 120 HHARVLIRQRHI 131
H AR LI HI
Sbjct: 122 HEARQLIVHGHI 133
>sp|Q00862|RS4_HALMA 30S ribosomal protein S4 OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps4 PE=3
SV=1
Length = 171
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 3/124 (2%)
Query: 10 HSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELL-TLDEKE 68
++K Y TP P++ R+ E +IG YGL+NK E+WR + L R+ AR+LL + E E
Sbjct: 6 NTKFYETPNHPFQGERIADEANLIGRYGLKNKEELWRAQSELRGYRREARKLLGSAGEHE 65
Query: 69 HRN-ALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIR 127
+ L RL R G+L+E +LD V L + D LERRLQT V++ G A + AR I
Sbjct: 66 TESEEFLARLKRYGILNEQD-QLDDVLSLDVTDVLERRLQTVVYRKGYANTPEQARQFIV 124
Query: 128 QRHI 131
HI
Sbjct: 125 HGHI 128
>sp|O26142|RS4_METTH 30S ribosomal protein S4 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rps4 PE=3 SV=1
Length = 171
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 6/129 (4%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K Y TP P+ R+ +E +++ +YGL+NK+EVW+ + + + R+ AR LL +
Sbjct: 4 PRKARKKYDTPPHPWNAERIKEENRLVAKYGLKNKKEVWKAETMVRRYRRDARYLLGM-A 62
Query: 67 KEH----RNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHA 122
EH R LL LVR G+L+E KL+ V L +ED L RRLQT V K GLA+++ A
Sbjct: 63 SEHTGKEREQLLGHLVRTGILNEG-AKLEDVLDLTVEDVLRRRLQTLVHKRGLARTVKEA 121
Query: 123 RVLIRQRHI 131
R ++ HI
Sbjct: 122 RQMVIHGHI 130
>sp|C3N8R6|RS4_SULIY 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + +P P+ K R+ E +++G+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP 63
Query: 67 KE---HRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
E L+ +L+++G+L +D + L +D LERRLQT V+K GLA + + AR
Sbjct: 64 AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQAR 123
Query: 124 VLIRQRHI 131
LI HI
Sbjct: 124 QLIIHGHI 131
>sp|C3NMQ2|RS4_SULIN 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=rps4 PE=3 SV=1
Length = 181
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + +P P+ K R+ E +++G+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP 63
Query: 67 KE---HRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
E L+ +L+++G+L +D + L +D LERRLQT V+K GLA + + AR
Sbjct: 64 AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQAR 123
Query: 124 VLIRQRHI 131
LI HI
Sbjct: 124 QLIIHGHI 131
>sp|C3MZ03|RS4_SULIM 30S ribosomal protein S4 OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=rps4 PE=3 SV=1
Length = 181
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Query: 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDE 66
P K + +P P+ K R+ E +++G+YGLRNKRE+W + + K R AR LL L
Sbjct: 4 PKKSRKKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPP 63
Query: 67 KE---HRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHAR 123
E L+ +L+++G+L +D + L +D LERRLQT V+K GLA + + AR
Sbjct: 64 AERAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQAR 123
Query: 124 VLIRQRHI 131
LI HI
Sbjct: 124 QLIIHGHI 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,029,250
Number of Sequences: 539616
Number of extensions: 1686592
Number of successful extensions: 6357
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 5644
Number of HSP's gapped (non-prelim): 678
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)