Query psy7992
Match_columns 131
No_of_seqs 138 out of 925
Neff 5.2
Searched_HMMs 29240
Date Sat Aug 17 00:02:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_J 40S ribosomal protein S 100.0 2.2E-48 7.6E-53 305.4 13.5 129 1-131 1-134 (197)
2 3j20_D 30S ribosomal protein S 100.0 2.4E-46 8.2E-51 290.3 11.0 124 7-131 4-130 (180)
3 2xzm_D Ribosomal protein S4 co 100.0 2.6E-44 9E-49 278.8 13.5 127 5-131 3-134 (181)
4 3iz6_C 40S ribosomal protein S 100.0 1.4E-47 5E-52 300.3 -14.9 129 1-131 1-136 (195)
5 2cqj_A BRMS2, U3 small nucleol 99.0 4.5E-11 1.5E-15 79.4 0.6 34 98-131 2-35 (71)
6 3bbn_D Ribosomal protein S4; s 98.6 9.9E-08 3.4E-12 74.6 6.9 71 24-131 46-116 (201)
7 1c05_A Ribosomal protein S4 de 98.3 6.1E-07 2.1E-11 67.3 5.4 71 24-131 8-78 (159)
8 2vqe_D 30S ribosomal protein S 97.8 4.4E-05 1.5E-09 59.6 6.6 33 99-131 94-126 (209)
9 3r8n_D 30S ribosomal protein S 97.6 3.3E-05 1.1E-09 60.6 3.4 34 98-131 89-122 (205)
10 3j20_E 30S ribosomal protein S 86.5 0.25 8.6E-06 39.5 1.6 34 89-131 38-71 (243)
11 1p9k_A ORF, hypothetical prote 83.6 0.11 3.6E-06 33.8 -1.5 28 104-131 21-48 (79)
12 2ktl_A Tyrosyl-tRNA synthetase 55.0 5.2 0.00018 30.0 1.7 26 105-130 51-76 (164)
13 3key_A Protein STN1; butterfly 31.6 51 0.0017 25.2 3.9 42 70-111 64-108 (185)
14 2pfc_A Hypothetical protein RV 29.9 27 0.00094 26.6 2.2 32 73-111 89-120 (183)
15 2jan_A Tyrosyl-tRNA synthetase 29.1 27 0.00092 29.6 2.2 27 105-131 357-383 (432)
16 1ity_A TRF1; helix-turn-helix, 28.2 89 0.003 19.0 4.1 30 15-44 7-36 (69)
17 1h3f_A Tyrosyl-tRNA synthetase 26.6 31 0.0011 29.0 2.2 27 105-131 370-396 (432)
18 1zl8_A LIN-7; heterodimer, alp 25.3 24 0.00083 21.8 1.0 31 71-103 13-43 (53)
19 2hwj_A AGR_C_2837P, hypothetic 25.1 45 0.0015 25.6 2.7 58 66-126 132-189 (205)
20 2elk_A SPCC24B10.08C protein; 24.0 1.1E+02 0.0036 18.2 3.8 30 17-46 8-37 (58)
21 2nn4_A Hypothetical protein YQ 22.6 1.2E+02 0.0042 19.6 4.1 39 16-54 21-59 (72)
22 2wl8_A Peroxisomal biogenesis 21.2 2.2E+02 0.0075 20.1 5.6 45 40-84 54-108 (126)
23 2juh_A Telomere binding protei 20.7 1.6E+02 0.0054 20.7 4.7 41 7-47 6-46 (121)
24 1jil_A Tyrrs, tyrosyl-tRNA syn 20.5 21 0.00073 29.9 0.0 27 105-131 354-380 (420)
25 2o3l_A Hypothetical protein; s 20.1 1.6E+02 0.0054 19.4 4.3 21 87-107 57-77 (85)
No 1
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=100.00 E-value=2.2e-48 Score=305.36 Aligned_cols=129 Identities=69% Similarity=1.095 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCccccCCCCchhhhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCChhhHH-----HHHHH
Q psy7992 1 MVNNRVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEHR-----NALLR 75 (131)
Q Consensus 1 ~~~~~~~~~~~k~~~~P~~pw~~~r~~~E~~i~~~YgLknk~E~~ky~~l~~~iRk~ar~L~~l~~~d~~-----~~LL~ 75 (131)
||.+ |++++|+|+||++||+++|+++|+++|++|||+||+|||+|+++|++||++|+.|++|+++||+ ++||+
T Consensus 1 ~~~~--~~~~~k~~~tP~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~Ll~l~~~dp~r~~~~~~LL~ 78 (197)
T 3u5c_J 1 MPRA--PRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSKIRRAARDLLTRDEKDPKRLFEGNALIR 78 (197)
T ss_dssp -CCC--CCCCCCSCCCCSSSCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred CCCC--CCCCCcccCCCCCchhHHhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 4444 8999999999999999999999999999999999999999999999999999999999999987 89999
Q ss_pred HHHHccccCcCccchhhhhhhhhhhHhhhhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 76 RLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 76 kL~~~Gll~e~~~~L~~vl~ltv~~flerRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
|||+||||++++.+|++|++||+++|||+|||++|+++|||+|+.+|+|||.||||
T Consensus 79 kL~~~Gil~~~~~~L~~v~~l~~~~~le~RLD~~L~r~G~a~Sr~~ArqLI~~GhV 134 (197)
T 3u5c_J 79 RLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHI 134 (197)
T ss_dssp HHHHHTSSCGGGCSSHHHHHCCHHHHHTTSHHHHHHHSSTTSSHHHHHHHHHTSCC
T ss_pred HHHHcCCCCCcccChhhhhcccHHHHHHHHHHHHHHHccccCCHHHHHHHHHcCCE
Confidence 99999999867899999999999999999999999999999999999999999998
No 2
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-46 Score=290.31 Aligned_cols=124 Identities=46% Similarity=0.731 Sum_probs=116.3
Q ss_pred CCCCCccccCCCCchhhhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCChhhHH---HHHHHHHHHcccc
Q psy7992 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEHR---NALLRRLVRIGVL 83 (131)
Q Consensus 7 ~~~~~k~~~~P~~pw~~~r~~~E~~i~~~YgLknk~E~~ky~~l~~~iRk~ar~L~~l~~~d~~---~~LL~kL~~~Gll 83 (131)
|++++|+|+||++||++||+++|++++++|||+||+|||+||++|++||++|+.|++++++|+. ++||+|||+||||
T Consensus 4 p~~~~k~~~~p~~pw~~~r~~~E~kl~~~YgL~nk~e~wk~~~~l~~~r~~Ar~L~~l~~~d~~~~~~~LL~kL~~~Gll 83 (180)
T 3j20_D 4 PKRQRKKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAEIEREQLLARLKRLGLL 83 (180)
T ss_dssp -----CCCCCCSSSSCHHHHHHHHHHHHHHTCSCTHHHHHHHHHHHHHHHHHHHHHHSCTTSCTHHHHHHHHHHHHHTSS
T ss_pred CCCCCCCCCCCCCchhhhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 6999999999999999999999999999999999999999999999999999999999999953 8999999999999
Q ss_pred CcCccchhhhhhhhhhhHhhhhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 84 DESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 84 ~e~~~~L~~vl~ltv~~flerRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
++ +.+||+|++|++++|||+|||++|++.|||+|+.+|++||.||||
T Consensus 84 ~~-~~~L~~vl~l~~~~~le~RLD~~L~~~G~a~SR~~Ar~LI~~G~V 130 (180)
T 3j20_D 84 PE-DAVLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHI 130 (180)
T ss_dssp SS-CCCSHHHHTCCHHHHHHTSHHHHHHHHTSSSSHHHHHHHHHHTCC
T ss_pred CC-CCCHHHHhccchHhhhhhhhhheeecCcccCcHHHHHHHHHcCCe
Confidence 94 899999999999999999999999999999999999999999998
No 3
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Probab=100.00 E-value=2.6e-44 Score=278.76 Aligned_cols=127 Identities=68% Similarity=1.047 Sum_probs=123.4
Q ss_pred CCCCCCCccccCCCCchhhhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCChhhHH-----HHHHHHHHH
Q psy7992 5 RVPSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEHR-----NALLRRLVR 79 (131)
Q Consensus 5 ~~~~~~~k~~~~P~~pw~~~r~~~E~~i~~~YgLknk~E~~ky~~l~~~iRk~ar~L~~l~~~d~~-----~~LL~kL~~ 79 (131)
+.|++++|+|+||++||++|++++|+++|++|||+||+|||+|+++|++||++|+.|++||++||+ .+||+||++
T Consensus 3 ~~~~~~~k~~~~p~~~w~~~~~~~E~~l~~~YgL~nk~e~w~~~~~~~~iR~~ar~L~~l~~~d~~r~~~~~~ll~kl~~ 82 (181)
T 2xzm_D 3 KTYINTSKTYSTPRRPYEKERLDNEMKLIGTFGLKNKREVWRVQMILAKFRKAARELLTLDPKDPRRLFEGSALLRRMFK 82 (181)
T ss_dssp CCCSCCCCCCCCCSSTTCHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcccCCCCCCccccccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred ccccCcCccchhhhhhhhhhhHhhhhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 80 IGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 80 ~Gll~e~~~~L~~vl~ltv~~flerRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
+|++.+.+++|+.+.+|++++||++|||++|++.||+.|..+|+++|.||||
T Consensus 83 ~g~~~~~kqkl~~~~gl~~~~~le~RLD~vL~~~G~a~SR~~Ar~LI~~G~V 134 (181)
T 2xzm_D 83 YGLLSEQERKLDYVLGLTIHKLMERRLQTRVFKLNLANSIHHSRVLIRQRHI 134 (181)
T ss_dssp TTSSCTTCCSTHHHHSCCHHHHHTTBHHHHHHHTTCSSSTTHHHHHTTTTCC
T ss_pred hccccchhhhHHHHhCcCcchhhccchhHHHHhccccCCHHHHHHHHHCCEE
Confidence 9999866899999999999999999999999999999999999999999998
No 4
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-47 Score=300.35 Aligned_cols=129 Identities=68% Similarity=1.070 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCccc--cCCCCchhhhhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCChhhHH-----HHH
Q psy7992 1 MVNNRVPSVHSKTY--VTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEHR-----NAL 73 (131)
Q Consensus 1 ~~~~~~~~~~~k~~--~~P~~pw~~~r~~~E~~i~~~YgLknk~E~~ky~~l~~~iRk~ar~L~~l~~~d~~-----~~L 73 (131)
||++ |++++|+| +||++||+++|+++|+++|++|||+||+|||+|+++|++||++|+.|++++++||+ ++|
T Consensus 1 ~~~~--~~~~~k~~~~~~P~~p~~~~r~~~E~~l~~~YgL~nKrE~wr~~~~l~~iR~~Ar~L~~l~e~d~~r~~~~~~l 78 (195)
T 3iz6_C 1 MPRA--PRTYSKTYSTKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRRIFEGEAL 78 (195)
T ss_dssp CCHH--HHHHHHHHHSCCSSCCCCCSHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHSSSCHHHHHHHTCCCHHHHHHHH
T ss_pred CCCC--cCCCCceeCCCCCCCchhHHhhHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHH
Confidence 4544 79999999 99999999999999999999999999999999999999999999999999999975 899
Q ss_pred HHHHHHccccCcCccchhhhhhhhhhhHhhhhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 74 LRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 74 L~kL~~~Gll~e~~~~L~~vl~ltv~~flerRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
|+|||+||+|+++..+||+|++||+++|||+|||++|+++|||+|+.+|+|||.||||
T Consensus 79 L~kL~~~Gll~e~~~~Ld~vl~l~~~~~le~RLD~~L~r~G~a~SR~~ArqlI~~GhV 136 (195)
T 3iz6_C 79 LRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHI 136 (195)
T ss_dssp TCSSSTTSHHHHHHHTTCCEETTEECCCTTSCCCSSCCCCCCHHHHSCTTSHHHHHST
T ss_pred HHHHHHcCCCCccccCHHHHHhhhHHHHHHhhhhHHHHhccccCCHHHHHHHHHcCCE
Confidence 9999999999866789999999999999999999999999999999999999999998
No 5
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.5e-11 Score=79.39 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=32.9
Q ss_pred hhhHhhhhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 98 IEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 98 v~~flerRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
+++||++|||+++++.|||+|..+|+++|.||||
T Consensus 2 ~~~~l~~RLD~~l~~~gla~SR~~A~~lI~~G~V 35 (71)
T 2cqj_A 2 SSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHV 35 (71)
T ss_dssp CSSCCEEEHHHHHHHTTCSSSHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHhCCcCCHHHHHHHHHCCcE
Confidence 6799999999999999999999999999999997
No 6
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=98.58 E-value=9.9e-08 Score=74.64 Aligned_cols=71 Identities=35% Similarity=0.536 Sum_probs=54.6
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHccccCcCccchhhhhhhhhhhHhh
Q psy7992 24 ARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLE 103 (131)
Q Consensus 24 ~r~~~E~~i~~~YgLknk~E~~ky~~l~~~iRk~ar~L~~l~~~d~~~~LL~kL~~~Gll~e~~~~L~~vl~ltv~~fle 103 (131)
.++.++.++...|||.. +.+.++.+.|+.+. |... . +.-++||
T Consensus 46 ~~l~ekqkl~~~yGl~e--------~q~~~~~~~a~~~~------------------g~tg---~--------~ll~~Le 88 (201)
T 3bbn_D 46 IRLEEKQKLRFHYGITE--------RQLLKYVRIARKAK------------------GSTG---Q--------VLLQLLE 88 (201)
T ss_dssp HHHTTHHHHHHHHTCCH--------HHHHHHHHHHHHSS------------------SCTT---T--------TTTHHHH
T ss_pred HHHHHHHHHHHHhCChH--------HHHHHHHHHHHhcc------------------CCcH---H--------HHHHHHH
Confidence 56778888889999872 34455566666543 3222 1 1338999
Q ss_pred hhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 104 RRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 104 rRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
+|||++|+++||+.|..+|+|+|.||||
T Consensus 89 ~RLD~~L~r~g~a~SR~~ArqLI~~G~V 116 (201)
T 3bbn_D 89 MRLDNILFRLGMAPTIPGARQLVNHRHI 116 (201)
T ss_dssp SBTTTTTTTTTSSSSSHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHhCCcE
Confidence 9999999999999999999999999997
No 7
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.33 E-value=6.1e-07 Score=67.31 Aligned_cols=71 Identities=30% Similarity=0.456 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHccccCcCccchhhhhhhhhhhHhh
Q psy7992 24 ARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLE 103 (131)
Q Consensus 24 ~r~~~E~~i~~~YgLknk~E~~ky~~l~~~iRk~ar~L~~l~~~d~~~~LL~kL~~~Gll~e~~~~L~~vl~ltv~~fle 103 (131)
.++.++.++...|||. ++.+.++.+.|+++.... +-++.++|+
T Consensus 8 ~~l~~kqk~~~~yg~~--------e~q~~~~~~~a~~~~g~~-----------------------------~~~~~~~le 50 (159)
T 1c05_A 8 LQLQEKQKLRHMYGVN--------ERQFRKTFEEAGKMPGKH-----------------------------GENFMILLE 50 (159)
T ss_dssp HHHHHHHHHHHTTTCC--------HHHHHHHHHHHTTSSSTH-----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--------HHHHHHHHHHHHhccCCh-----------------------------hHHHHHHHH
Confidence 5788899999999998 345666666666544321 112457899
Q ss_pred hhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 104 RRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 104 rRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
.|||.++++.|++.|..+|+++|.||||
T Consensus 51 ~RLD~~L~~~g~~~SR~~ar~lI~~G~V 78 (159)
T 1c05_A 51 SRLDNLVYRLGLARTRRQARQLVTHGHI 78 (159)
T ss_dssp HBHHHHHHHTTSCSSHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHCCCE
Confidence 9999999999999999999999999997
No 8
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=97.79 E-value=4.4e-05 Score=59.57 Aligned_cols=33 Identities=45% Similarity=0.697 Sum_probs=31.1
Q ss_pred hhHhhhhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 99 EDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 99 ~~flerRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
...++.|||.++++.|++.|..+|+++|.||||
T Consensus 94 ~~~le~RLD~~L~~~g~~~SR~~arqLI~~G~V 126 (209)
T 2vqe_D 94 LGLLESRLDNVVYRLGFAVSRRQARQLVRHGHI 126 (209)
T ss_dssp HHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCE
T ss_pred HHhHHHHHHHHHHHhcCcCCHHHHHHHHHCCCE
Confidence 467889999999999999999999999999997
No 9
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=97.61 E-value=3.3e-05 Score=60.56 Aligned_cols=34 Identities=29% Similarity=0.568 Sum_probs=32.0
Q ss_pred hhhHhhhhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 98 IEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 98 v~~flerRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
.-.+||.|||.+++++|++.|..+|+++|.||||
T Consensus 89 ll~lle~RLD~~L~r~g~~~SR~~ArqLI~~G~V 122 (205)
T 3r8n_D 89 LLALLEGRLDNVVYRMGFGATRAEARQLVSHKAI 122 (205)
T ss_dssp HHHHHHTBTTHHHHTTSSCSSHHHHHHHHHTTCC
T ss_pred HHHhhHhhHHHHHHHhcchhHHHHHHHHHHCCCE
Confidence 3468999999999999999999999999999997
No 10
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=86.51 E-value=0.25 Score=39.49 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=25.6
Q ss_pred chhhhhhhhhhhHhhhhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 89 KLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 89 ~L~~vl~ltv~~flerRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
+++.|+ ...-||+- ++|+|.|.++|+|++.||||
T Consensus 38 ~~~~~l--PL~i~LRd-------rLgyA~t~rEar~Iv~~~~I 71 (243)
T 3j20_E 38 NMRTSI--PLLYIVRD-------YLGYAKTAREARKILNEGKF 71 (243)
T ss_dssp CSTTCE--EHHHHHHT-------TSCCCSSHHHHHHHHHHCSC
T ss_pred ccccce--eehhhhhh-------hhccccCHHHHHHHHHCCcE
Confidence 355553 33345554 57999999999999999997
No 11
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=83.61 E-value=0.11 Score=33.77 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=25.4
Q ss_pred hhhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 104 RRLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 104 rRL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
.||+..+...|++.|..+|+.+|.+|.|
T Consensus 21 ~RLdk~L~~~g~~~SR~~a~~lI~~G~V 48 (79)
T 1p9k_A 21 VELCDLLKLEGWSESGAQAKIAIAEGQV 48 (79)
T ss_dssp CCHHHHHHHHTSCSSSSTTSHHHHHHHH
T ss_pred chHHHHHHHCCCCCCHHHHHHHHHCCEE
Confidence 5999999999999999999999998864
No 12
>2ktl_A Tyrosyl-tRNA synthetase; S4 fold, aminoacyl-tRNA synthetase, ligase; NMR {Aspergillus nidulans fgsc A4}
Probab=54.98 E-value=5.2 Score=30.01 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=22.7
Q ss_pred hhhhhhhhcccCCCHHHHHhhhccCC
Q psy7992 105 RLQTQVFKLGLAKSIHHARVLIRQRH 130 (131)
Q Consensus 105 RL~~vv~r~~~a~si~~Arq~I~hgH 130 (131)
-+-.+++..||+.|-.+||.+|.+|-
T Consensus 51 ~ivdlLv~aGLa~SKsEARRlI~qGG 76 (164)
T 2ktl_A 51 TFSKVLWSAGLVASKSEGQRIINNNG 76 (164)
T ss_dssp SHHHHHHHHTSCSTHHHHHHHHHHTC
T ss_pred cHHHHHHHhCcccCHHHHHHHHHhCC
Confidence 36677889999999999999999874
No 13
>3key_A Protein STN1; butterfly WING-shaped, helix, chromosomal protein, phosphoprotein, telomere; 2.10A {Saccharomyces cerevisiae} PDB: 3k10_A
Probab=31.57 E-value=51 Score=25.21 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=28.6
Q ss_pred HHHHHHHHHHccccCcCc---cchhhhhhhhhhhHhhhhhhhhhh
Q psy7992 70 RNALLRRLVRIGVLDESK---MKLDYVWGLKIEDFLERRLQTQVF 111 (131)
Q Consensus 70 ~~~LL~kL~~~Gll~e~~---~~L~~vl~ltv~~flerRL~~vv~ 111 (131)
|..+|.+|.+.|+|.=+. ..+|.-.==++.++|.+|+.+.+.
T Consensus 64 F~d~L~~L~~~gLI~~~~~~~n~iDL~~Lk~L~~Yc~kRi~~LIk 108 (185)
T 3key_A 64 FRDLVNRLVSQGLIGLKDKTSETFDLLPLKNLFEYAEKRISVLMK 108 (185)
T ss_dssp HHHHHHHHHHTTSSEEEETTTTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEecCCCCeeecHHHHHHHHHHHHHHHHHHH
Confidence 488999999999995211 122221123567999999998874
No 14
>2pfc_A Hypothetical protein RV0098/MT0107; thioesterase, virulence, unknown function; HET: PLM; 2.30A {Mycobacterium tuberculosis}
Probab=29.91 E-value=27 Score=26.63 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHccccCcCccchhhhhhhhhhhHhhhhhhhhhh
Q psy7992 73 LLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVF 111 (131)
Q Consensus 73 LL~kL~~~Gll~e~~~~L~~vl~ltv~~flerRL~~vv~ 111 (131)
|+.+....|+++ .....++++||+|.|+.|+-
T Consensus 89 l~A~~v~~~li~-------~f~~Wtiddf~~rQLsdiLI 120 (183)
T 2pfc_A 89 AFAPAVLNEEIR-------VLRGWSIDDYCQHQLSSMLI 120 (183)
T ss_dssp HHHHHHHTTCSG-------GGTTCCHHHHHHHHHHHEEE
T ss_pred HHHHHHHhccch-------hhcccCHHHHHHHhccceee
Confidence 455555555554 45578999999999999873
No 15
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=29.10 E-value=27 Score=29.56 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.6
Q ss_pred hhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 105 RLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 105 RL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
.+..++...|++.|-.+||.+|.+|-|
T Consensus 357 ~~~~ll~~~gl~~S~~earr~i~~ggv 383 (432)
T 2jan_A 357 GIVDLLVASGLSASKGAARRTIHEGGV 383 (432)
T ss_dssp SHHHHHHHHTSCSSHHHHHHHHTTTCE
T ss_pred hHHHHHHHhCCcccHHHHHHHHHhCCE
Confidence 467778899999999999999999853
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=28.20 E-value=89 Score=19.02 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=21.0
Q ss_pred cCCCCchhhhhhhHHHHHHHHhcCCChHHH
Q psy7992 15 VTPRRPYEKARLDQELKIIGEYGLRNKREV 44 (131)
Q Consensus 15 ~~P~~pw~~~r~~~E~~i~~~YgLknk~E~ 44 (131)
..++.||..+--..=.+.+.+||..+..++
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~I 36 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKI 36 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 346778887755555667889998776544
No 17
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=26.61 E-value=31 Score=29.04 Aligned_cols=27 Identities=30% Similarity=0.295 Sum_probs=23.5
Q ss_pred hhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 105 RLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 105 RL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
.+..++...|++.|-.+||.+|.+|-|
T Consensus 370 ~~~~~l~~~~l~~S~~earr~i~~ggv 396 (432)
T 1h3f_A 370 WVARLFTLAGLTPSNAEARRLIQNRGL 396 (432)
T ss_dssp EHHHHHHHTTSSSSHHHHHHHHHTTCE
T ss_pred cHHHHHHHhCCcccHHHHHHHHHhCCE
Confidence 466778899999999999999999853
No 18
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.28 E-value=24 Score=21.81 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=23.3
Q ss_pred HHHHHHHHHccccCcCccchhhhhhhhhhhHhh
Q psy7992 71 NALLRRLVRIGVLDESKMKLDYVWGLKIEDFLE 103 (131)
Q Consensus 71 ~~LL~kL~~~Gll~e~~~~L~~vl~ltv~~fle 103 (131)
-.||++|.+-|=++ ..+|...-++=-|+||.
T Consensus 13 iELle~lq~sgevp--~~KL~aLq~VLqSdF~~ 43 (53)
T 1zl8_A 13 LELMEHVQKTGEVN--NAKLASLQQVLQSEFFG 43 (53)
T ss_dssp HHHHHHHGGGSSST--HHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHH
Confidence 47899999999998 35676665666677775
No 19
>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.61A {Agrobacterium tumefaciens str} SCOP: d.268.1.3
Probab=25.11 E-value=45 Score=25.62 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHccccCcCccchhhhhhhhhhhHhhhhhhhhhhhcccCCCHHHHHhhh
Q psy7992 66 EKEHRNALLRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 126 (131)
Q Consensus 66 ~~d~~~~LL~kL~~~Gll~e~~~~L~~vl~ltv~~flerRL~~vv~r~~~a~si~~Arq~I 126 (131)
.+||+..|...+-+.|....+ .... ..--=.+|+++|++.--+...|+.-+.+|..+-
T Consensus 132 ~DDpyRSLa~~~R~~Ggy~k~--~~pf-~EF~Wa~~lR~~~~~~~~~~~~~~al~~A~~lA 189 (205)
T 2hwj_A 132 EDDPFRSLAGALRMAGGYAKV--IIPF-SEFGWADFLRRRIDRDLLSDSFDDALAEAMKLA 189 (205)
T ss_dssp EECHHHHHHHHHHHHTSSCCC--SSTT-HHHHHHHHHHTTSCHHHHHHCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHcCCccCC--CCcc-eeecHHHHHHHhCCCCcchHhHHHHHHHHHHHh
Confidence 457888999999999877532 2222 345677999999988777888999999988764
No 20
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=23.96 E-value=1.1e+02 Score=18.18 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=21.3
Q ss_pred CCCchhhhhhhHHHHHHHHhcCCChHHHHH
Q psy7992 17 PRRPYEKARLDQELKIIGEYGLRNKREVWR 46 (131)
Q Consensus 17 P~~pw~~~r~~~E~~i~~~YgLknk~E~~k 46 (131)
.+.||..+--..=++.+.+||..|..++.+
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~ 37 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIAD 37 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 356788765555577889999988776543
No 21
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=22.64 E-value=1.2e+02 Score=19.63 Aligned_cols=39 Identities=23% Similarity=0.060 Sum_probs=33.5
Q ss_pred CCCCchhhhhhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy7992 16 TPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKI 54 (131)
Q Consensus 16 ~P~~pw~~~r~~~E~~i~~~YgLknk~E~~ky~~l~~~i 54 (131)
+..+-|.-+-+.-|++-+-++||=++++|..+..+++.=
T Consensus 21 ~GdR~~DielM~~El~~Ly~~~lId~~~y~~A~liL~~E 59 (72)
T 2nn4_A 21 FGDRELEIEFMLDELKELYMNHMIEKEQWARAAAVLRKE 59 (72)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 455678888999999999999999999999998877643
No 22
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=21.18 E-value=2.2e+02 Score=20.12 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcCChhh-------HH---HHHHHHHHHccccC
Q psy7992 40 NKREVWRVKYALAKIRKAARELLTLDEKE-------HR---NALLRRLVRIGVLD 84 (131)
Q Consensus 40 nk~E~~ky~~l~~~iRk~ar~L~~l~~~d-------~~---~~LL~kL~~~Gll~ 84 (131)
..+|+.+|.+...-++++...+-.-+..| .| -.|+.+|-..|--+
T Consensus 54 ~~Ed~~RY~kQ~~lv~~I~~~fE~~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 54 PPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHcCCCc
Confidence 67999999999999999999988765443 23 56777777788765
No 23
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.72 E-value=1.6e+02 Score=20.67 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=27.8
Q ss_pred CCCCCccccCCCCchhhhhhhHHHHHHHHhcCCChHHHHHH
Q psy7992 7 PSVHSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRV 47 (131)
Q Consensus 7 ~~~~~k~~~~P~~pw~~~r~~~E~~i~~~YgLknk~E~~ky 47 (131)
++.....-..++.||..+--..=+..+.+||-.+..++-+.
T Consensus 6 ~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~ 46 (121)
T 2juh_A 6 SKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMR 46 (121)
T ss_dssp CCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHH
T ss_pred CCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 33444456778899998755555778889998666654443
No 24
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=20.46 E-value=21 Score=29.89 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhhhhhhhcccCCCHHHHHhhhccCCC
Q psy7992 105 RLQTQVFKLGLAKSIHHARVLIRQRHI 131 (131)
Q Consensus 105 RL~~vv~r~~~a~si~~Arq~I~hgHI 131 (131)
.|..++...|++.|-.+||.+|.+|-|
T Consensus 354 ~l~~lL~~agl~~SksEARRlI~~GgV 380 (420)
T 1jil_A 354 NIVEVLIETGISPSKRQAREDVNNGAI 380 (420)
T ss_dssp ---------------------------
T ss_pred cHHHHHHHcCCccCHHHHHHHHHhCCE
Confidence 577888899999999999999999854
No 25
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=20.12 E-value=1.6e+02 Score=19.44 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=16.3
Q ss_pred ccchhhhhhhhhhhHhhhhhh
Q psy7992 87 KMKLDYVWGLKIEDFLERRLQ 107 (131)
Q Consensus 87 ~~~L~~vl~ltv~~flerRL~ 107 (131)
+.+..+|.+=++..||+--+.
T Consensus 57 G~~v~eV~G~D~~~Fcdeli~ 77 (85)
T 2o3l_A 57 GRQVLDITGEDVASFADELVA 77 (85)
T ss_dssp TCCHHHHHCSCHHHHHHHHHH
T ss_pred CCchHHHhCcCHHHHHHHHHh
Confidence 456788888889999987655
Done!