RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7992
         (131 letters)



>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 159

 Score = 30.6 bits (69), Expect = 0.028
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 74  LRRLVRIGVLDESKMKLDYVWGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHI 131
            R+            K+    G      LE RL   V++LGLA++   AR L+   HI
Sbjct: 27  FRKTFEEA------GKMPGKHGENFMILLESRLDNLVYRLGLARTRRQARQLVTHGHI 78


>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli
           [TaxId: 562]}
          Length = 204

 Score = 27.9 bits (62), Expect = 0.34
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 102 LERRLQTQVFKLGLAKSIHHARVLIRQRHI 131
           LE RL   V+++G   +   AR L+  + I
Sbjct: 92  LEGRLDNVVYRMGFGATRAEARQLVSHKAI 121


>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
           UGT71G1 {Medicago truncatula [TaxId: 3880]}
          Length = 461

 Score = 25.1 bits (53), Expect = 3.0
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 20  PYEKARLDQELKIIGEYGLRNKREVWRVKYAL--AKIRKAARELLTLDEKEHRNAL-LRR 76
                RL +E  +    GL  + +  +    +   +I K  ++L+  D   H+    ++ 
Sbjct: 381 QLNAFRLVKEWGV----GLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKE 436

Query: 77  LVRIGVLD 84
           + R  V+D
Sbjct: 437 MSRNAVVD 444


>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score = 24.6 bits (52), Expect = 4.6
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 12/90 (13%)

Query: 50  ALAKIRKAARELLTLDEKEHRNALLRRLVRIGVLDESK------MKLDYVWGLKI---ED 100
              K+R+A   L     +E +N  ++++     LDE +       ++D     +    E 
Sbjct: 6   KAKKVREAWDVLRNATTRE-KNKAIKKIAEK--LDERRKEILEANRIDVEKARERGVKES 62

Query: 101 FLERRLQTQVFKLGLAKSIHHARVLIRQRH 130
            ++R          + K+      L     
Sbjct: 63  LVDRLALNDKRIDEMIKACETVIGLKDPVG 92


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.4 bits (52), Expect = 5.3
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 37 GLRNKR----EVWRVKYALAKIRKAARELLTLDEKEHRNALLRRL 77
           +RN +    E+ R+   LA IR   +    LD    +  + + L
Sbjct: 11 DIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLL 55


>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit,
           domain 1 {Propionibacterium freudenreichii, subsp.
           shermanii [TaxId: 1744]}
          Length = 557

 Score = 24.3 bits (52), Expect = 6.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 38  LRNKREVWRVKYALAKIRKAARELLTLDEKE 68
           LR +R+  +VK AL KI  AA      D   
Sbjct: 496 LRAERDPEKVKAALDKITWAAGNPDDKDPDR 526


>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain
           {Caulobacter crescentus [TaxId: 155892]}
          Length = 139

 Score = 23.7 bits (50), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 51  LAKIRKAARELLTLDEKEHRNALLRRL 77
            A++R   R  L +DE   R A  RR+
Sbjct: 112 FARVRSLTRFKLVIDELRQREASGRRM 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 499,727
Number of extensions: 22745
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 15
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.7 bits)