Query psy7993
Match_columns 300
No_of_seqs 249 out of 712
Neff 4.6
Searched_HMMs 46136
Date Sat Aug 17 00:03:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0013|consensus 100.0 4E-57 8.6E-62 406.9 13.3 221 1-282 1-223 (231)
2 cd01807 GDX_N ubiquitin-like d 99.8 8.8E-19 1.9E-23 133.1 9.0 74 206-281 1-74 (74)
3 cd01794 DC_UbP_C dendritic cel 99.8 1E-18 2.2E-23 133.1 8.0 70 208-279 1-70 (70)
4 cd01797 NIRF_N amino-terminal 99.7 7.6E-18 1.6E-22 130.7 8.7 74 206-281 1-76 (78)
5 cd01805 RAD23_N Ubiquitin-like 99.7 2.1E-17 4.5E-22 125.3 9.4 75 206-282 1-77 (77)
6 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 3.5E-17 7.6E-22 125.9 8.8 72 205-278 1-72 (73)
7 PTZ00044 ubiquitin; Provisiona 99.7 4.7E-17 1E-21 123.3 9.2 73 206-280 1-73 (76)
8 cd01793 Fubi Fubi ubiquitin-li 99.7 5.1E-17 1.1E-21 123.6 8.8 72 206-281 1-72 (74)
9 cd01802 AN1_N ubiquitin-like d 99.7 9.5E-17 2E-21 131.0 9.4 75 204-280 26-100 (103)
10 cd01798 parkin_N amino-termina 99.7 1.4E-16 3E-21 119.7 8.2 69 208-278 1-69 (70)
11 cd01806 Nedd8 Nebb8-like ubiq 99.7 2.7E-16 5.8E-21 118.0 9.3 73 206-280 1-73 (76)
12 cd01804 midnolin_N Ubiquitin-l 99.7 2.6E-16 5.7E-21 121.6 9.5 73 206-281 2-74 (78)
13 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.1E-16 4.6E-21 122.2 8.6 75 206-282 3-79 (80)
14 cd01810 ISG15_repeat2 ISG15 ub 99.7 2E-16 4.4E-21 120.3 8.3 71 208-280 1-71 (74)
15 cd01809 Scythe_N Ubiquitin-lik 99.7 4E-16 8.6E-21 116.0 8.9 71 206-278 1-71 (72)
16 cd01803 Ubiquitin Ubiquitin. U 99.7 3.9E-16 8.5E-21 117.1 8.6 73 206-280 1-73 (76)
17 PF00240 ubiquitin: Ubiquitin 99.6 8.9E-16 1.9E-20 113.9 8.9 68 211-280 1-68 (69)
18 cd01808 hPLIC_N Ubiquitin-like 99.6 7.3E-16 1.6E-20 116.2 8.5 71 206-279 1-71 (71)
19 cd01790 Herp_N Homocysteine-re 99.6 6.1E-16 1.3E-20 121.5 7.7 72 205-278 1-78 (79)
20 KOG0005|consensus 99.6 3.3E-16 7.1E-21 117.8 4.5 70 206-277 1-70 (70)
21 KOG0013|consensus 99.6 4.2E-16 9E-21 141.6 4.4 91 39-134 138-228 (231)
22 cd01796 DDI1_N DNA damage indu 99.6 2.3E-15 4.9E-20 114.3 7.5 68 208-276 1-69 (71)
23 TIGR00601 rad23 UV excision re 99.6 5.3E-15 1.1E-19 144.8 10.1 76 206-283 1-79 (378)
24 cd01812 BAG1_N Ubiquitin-like 99.6 7.8E-15 1.7E-19 109.2 7.8 70 206-278 1-70 (71)
25 cd01800 SF3a120_C Ubiquitin-li 99.6 1.1E-14 2.5E-19 111.5 8.1 66 216-282 7-72 (76)
26 cd01813 UBP_N UBP ubiquitin pr 99.5 2.3E-14 5E-19 110.2 8.0 69 206-277 1-72 (74)
27 cd01763 Sumo Small ubiquitin-r 99.5 1.4E-13 3.1E-18 108.4 11.2 81 199-281 5-85 (87)
28 cd01814 NTGP5 Ubiquitin-like N 99.5 3.2E-14 6.9E-19 118.5 6.9 79 204-284 3-95 (113)
29 KOG0010|consensus 99.5 1.2E-13 2.5E-18 138.0 9.0 80 204-286 14-93 (493)
30 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 6.1E-14 1.3E-18 109.4 5.5 53 225-278 19-74 (75)
31 KOG0011|consensus 99.4 2.5E-13 5.5E-18 130.2 8.9 75 206-282 1-77 (340)
32 cd01799 Hoil1_N Ubiquitin-like 99.4 4E-13 8.8E-18 103.9 8.1 69 207-278 4-74 (75)
33 KOG0004|consensus 99.4 5.4E-14 1.2E-18 122.6 3.5 72 206-279 1-72 (156)
34 smart00213 UBQ Ubiquitin homol 99.4 6.9E-13 1.5E-17 95.4 7.3 64 206-272 1-64 (64)
35 KOG0003|consensus 99.4 4.3E-14 9.2E-19 117.3 0.2 71 207-279 2-72 (128)
36 cd01769 UBL Ubiquitin-like dom 99.3 1.8E-11 3.9E-16 89.0 8.3 67 210-278 2-68 (69)
37 PF11976 Rad60-SLD: Ubiquitin- 99.2 5.1E-11 1.1E-15 89.3 8.3 71 206-278 1-72 (72)
38 cd01795 USP48_C USP ubiquitin- 99.1 9.1E-11 2E-15 96.4 7.0 65 217-282 15-80 (107)
39 cd01789 Alp11_N Ubiquitin-like 99.1 1.3E-09 2.8E-14 85.7 9.7 75 206-281 2-83 (84)
40 PF13881 Rad60-SLD_2: Ubiquiti 99.0 2.8E-09 6.1E-14 88.6 10.1 76 204-281 1-90 (111)
41 KOG0001|consensus 99.0 4.4E-09 9.6E-14 75.2 9.2 72 208-281 2-73 (75)
42 KOG4248|consensus 98.7 1.3E-08 2.9E-13 109.1 6.9 73 206-281 3-75 (1143)
43 PF14560 Ubiquitin_2: Ubiquiti 98.7 7.1E-08 1.5E-12 75.6 9.1 75 206-281 2-85 (87)
44 PLN02560 enoyl-CoA reductase 98.6 9.7E-08 2.1E-12 91.6 7.9 69 206-276 1-80 (308)
45 cd00196 UBQ Ubiquitin-like pro 98.6 3.9E-07 8.5E-12 61.0 7.8 67 210-278 2-68 (69)
46 cd01801 Tsc13_N Ubiquitin-like 98.4 5.8E-07 1.3E-11 69.1 6.4 52 224-276 20-74 (77)
47 cd01788 ElonginB Ubiquitin-lik 98.3 2.1E-06 4.6E-11 72.2 8.2 72 206-280 3-81 (119)
48 PF11543 UN_NPL4: Nuclear pore 98.1 5.5E-06 1.2E-10 65.1 5.9 70 204-276 3-77 (80)
49 KOG1872|consensus 97.9 2.2E-05 4.8E-10 79.0 7.4 89 206-297 4-95 (473)
50 PF10302 DUF2407: DUF2407 ubiq 97.8 3.7E-05 8E-10 62.7 6.0 58 208-265 3-64 (97)
51 KOG0006|consensus 97.8 5.7E-05 1.2E-09 73.5 7.2 64 217-281 14-77 (446)
52 PF00789 UBX: UBX domain; Int 97.1 0.0054 1.2E-07 47.0 9.2 72 203-276 4-80 (82)
53 KOG3493|consensus 97.1 0.00024 5.3E-09 54.7 1.4 61 216-277 11-71 (73)
54 cd01811 OASL_repeat1 2'-5' oli 97.0 0.0042 9.2E-08 49.1 8.1 70 206-278 1-75 (80)
55 KOG1769|consensus 97.0 0.0079 1.7E-07 49.6 9.4 77 203-281 18-94 (99)
56 KOG4495|consensus 96.7 0.0036 7.7E-08 51.8 5.2 61 206-269 3-65 (110)
57 smart00166 UBX Domain present 96.3 0.035 7.7E-07 42.7 8.4 71 204-276 3-78 (80)
58 PF08817 YukD: WXG100 protein 96.3 0.017 3.6E-07 44.6 6.6 69 206-276 3-78 (79)
59 cd01770 p47_UBX p47-like ubiqu 96.1 0.043 9.4E-07 42.9 8.3 70 205-276 4-77 (79)
60 KOG4583|consensus 96.0 0.00087 1.9E-08 65.6 -2.1 92 205-297 9-108 (391)
61 cd01774 Faf1_like2_UBX Faf1 ik 95.8 0.092 2E-06 41.7 9.0 70 204-276 3-82 (85)
62 cd01767 UBX UBX (ubiquitin reg 95.4 0.11 2.5E-06 39.5 8.1 68 205-275 2-74 (77)
63 cd01772 SAKS1_UBX SAKS1-like U 94.1 0.37 8E-06 37.4 8.0 70 204-276 3-77 (79)
64 KOG3206|consensus 94.0 0.15 3.3E-06 47.4 6.5 73 206-281 2-83 (234)
65 PF11470 TUG-UBL1: GLUT4 regul 93.5 0.3 6.5E-06 37.3 6.3 60 215-275 5-64 (65)
66 COG5227 SMT3 Ubiquitin-like pr 93.1 0.58 1.3E-05 38.5 7.7 72 207-279 24-96 (103)
67 PF15044 CLU_N: Mitochondrial 92.7 0.22 4.8E-06 38.7 4.6 55 223-277 1-56 (76)
68 PF13019 Telomere_Sde2: Telome 92.3 0.65 1.4E-05 41.5 7.6 59 206-265 1-67 (162)
69 cd01773 Faf1_like1_UBX Faf1 ik 91.1 2.4 5.3E-05 33.8 9.0 71 203-276 3-78 (82)
70 COG5417 Uncharacterized small 90.7 1.6 3.5E-05 34.8 7.5 70 206-276 5-80 (81)
71 cd01771 Faf1_UBX Faf1 UBX doma 90.3 2.9 6.3E-05 32.8 8.7 70 204-276 3-77 (80)
72 KOG1639|consensus 88.0 1 2.2E-05 43.3 5.4 55 221-276 17-76 (297)
73 PF09379 FERM_N: FERM N-termin 86.7 4.8 0.0001 30.1 7.6 67 210-278 1-76 (80)
74 cd06406 PB1_P67 A PB1 domain i 86.6 2.3 5.1E-05 33.9 5.9 47 206-255 3-49 (80)
75 PRK08364 sulfur carrier protei 86.2 6.8 0.00015 29.6 8.1 60 208-277 5-64 (70)
76 PLN02799 Molybdopterin synthas 85.8 3.6 7.7E-05 31.5 6.6 67 205-277 1-76 (82)
77 PF14836 Ubiquitin_3: Ubiquiti 85.2 4.8 0.0001 32.7 7.2 63 217-281 14-82 (88)
78 cd00754 MoaD Ubiquitin domain 85.0 4.3 9.4E-05 30.3 6.6 55 217-277 16-74 (80)
79 PF11620 GABP-alpha: GA-bindin 84.6 2.6 5.7E-05 34.2 5.4 60 219-279 5-64 (88)
80 PRK06437 hypothetical protein; 84.1 6.7 0.00014 29.6 7.2 52 216-277 10-61 (67)
81 smart00295 B41 Band 4.1 homolo 84.1 12 0.00025 32.2 9.8 64 204-269 2-72 (207)
82 smart00455 RBD Raf-like Ras-bi 84.0 3 6.5E-05 31.9 5.4 45 208-253 2-46 (70)
83 smart00666 PB1 PB1 domain. Pho 81.3 6.8 0.00015 29.5 6.4 46 206-253 2-47 (81)
84 PF00564 PB1: PB1 domain; Int 80.9 5.3 0.00011 30.1 5.7 46 206-253 2-48 (84)
85 KOG2086|consensus 80.4 2.6 5.6E-05 42.3 4.8 69 205-275 305-377 (380)
86 cd01760 RBD Ubiquitin-like dom 80.1 4.8 0.0001 31.2 5.2 45 208-253 2-46 (72)
87 cd06409 PB1_MUG70 The MUG70 pr 79.9 4.9 0.00011 32.4 5.4 45 207-252 2-49 (86)
88 PF12754 Blt1: Cell-cycle cont 77.8 0.71 1.5E-05 45.1 0.0 62 203-265 76-157 (309)
89 PF02196 RBD: Raf-like Ras-bin 77.5 9.3 0.0002 29.2 6.1 55 207-262 2-58 (71)
90 TIGR01687 moaD_arch MoaD famil 73.8 34 0.00073 26.3 8.5 56 217-277 16-82 (88)
91 cd01777 SNX27_RA Ubiquitin dom 72.8 6.8 0.00015 31.8 4.4 45 206-251 2-46 (87)
92 cd05992 PB1 The PB1 domain is 72.7 14 0.00029 27.7 5.9 45 207-253 2-47 (81)
93 PF14453 ThiS-like: ThiS-like 70.9 12 0.00026 28.1 5.1 48 219-278 8-55 (57)
94 PF08337 Plexin_cytopl: Plexin 70.0 19 0.00042 37.8 8.1 78 202-280 186-290 (539)
95 PRK06488 sulfur carrier protei 69.8 21 0.00044 26.3 6.2 53 216-277 7-59 (65)
96 TIGR01682 moaD molybdopterin c 69.4 29 0.00063 26.3 7.1 56 216-277 14-74 (80)
97 KOG0012|consensus 68.9 12 0.00026 37.6 6.0 59 216-275 12-72 (380)
98 cd01817 RGS12_RBD Ubiquitin do 68.8 16 0.00035 28.8 5.6 45 209-254 3-47 (73)
99 KOG0007|consensus 68.4 2 4.3E-05 42.0 0.6 48 215-262 291-339 (341)
100 cd00565 ThiS ThiaminS ubiquiti 68.1 17 0.00038 26.7 5.5 51 221-277 9-59 (65)
101 cd06407 PB1_NLP A PB1 domain i 66.6 17 0.00037 28.7 5.4 46 209-254 2-48 (82)
102 PF14451 Ub-Mut7C: Mut7-C ubiq 60.1 53 0.0011 26.0 7.1 53 215-277 21-74 (81)
103 PF11069 DUF2870: Protein of u 59.2 16 0.00034 30.4 4.1 31 248-280 3-33 (98)
104 PF09498 DUF2388: Protein of u 56.8 7.4 0.00016 30.6 1.7 25 73-97 47-71 (72)
105 PRK06944 sulfur carrier protei 56.7 69 0.0015 23.1 6.9 53 216-277 7-59 (65)
106 PF10414 CysG_dimeriser: Siroh 56.6 5.5 0.00012 29.1 1.0 34 55-99 25-58 (60)
107 KOG2982|consensus 56.0 26 0.00057 35.2 5.7 55 221-276 352-414 (418)
108 TIGR01683 thiS thiamine biosyn 54.3 42 0.0009 24.6 5.4 51 221-277 8-58 (64)
109 PF02597 ThiS: ThiS family; I 53.5 33 0.00071 25.2 4.8 57 218-277 13-71 (77)
110 KOG3439|consensus 52.0 68 0.0015 27.4 6.8 54 203-256 28-84 (116)
111 PF00788 RA: Ras association ( 49.7 77 0.0017 23.8 6.4 38 206-244 3-44 (93)
112 TIGR02958 sec_mycoba_snm4 secr 49.7 76 0.0016 32.4 8.1 69 206-277 3-78 (452)
113 cd06408 PB1_NoxR The PB1 domai 48.9 81 0.0018 25.5 6.6 54 208-264 3-56 (86)
114 KOG2561|consensus 47.4 15 0.00033 38.1 2.7 71 207-278 37-110 (568)
115 PRK05659 sulfur carrier protei 46.2 65 0.0014 23.4 5.3 54 216-277 7-60 (66)
116 cd06411 PB1_p51 The PB1 domain 45.9 40 0.00086 26.9 4.3 36 218-253 8-43 (78)
117 KOG4250|consensus 45.2 52 0.0011 35.9 6.3 44 213-256 321-364 (732)
118 PF12436 USP7_ICP0_bdg: ICP0-b 44.4 39 0.00085 31.5 4.8 47 204-250 175-223 (249)
119 cd01787 GRB7_RA RA (RAS-associ 42.9 69 0.0015 25.9 5.3 58 207-265 4-68 (85)
120 PF14533 USP7_C2: Ubiquitin-sp 42.6 46 0.001 30.3 4.9 48 217-264 34-89 (213)
121 COG5100 NPL4 Nuclear pore prot 42.6 1.2E+02 0.0026 31.5 8.1 72 206-280 1-80 (571)
122 TIGR02448 conserverd hypotheti 41.9 17 0.00036 30.4 1.7 24 74-97 77-100 (101)
123 PF14533 USP7_C2: Ubiquitin-sp 41.8 25 0.00055 32.0 3.0 50 216-265 132-193 (213)
124 PRK06083 sulfur carrier protei 40.6 1.5E+02 0.0032 23.6 6.8 55 216-278 25-79 (84)
125 KOG4842|consensus 39.0 5.8 0.00013 38.2 -1.6 59 206-265 2-60 (278)
126 COG4749 Uncharacterized protei 37.9 53 0.0011 30.0 4.3 46 60-107 108-153 (196)
127 PF02824 TGS: TGS domain; Int 37.8 84 0.0018 23.0 4.8 59 208-277 1-59 (60)
128 cd06396 PB1_NBR1 The PB1 domai 37.6 94 0.002 24.9 5.3 35 209-243 2-38 (81)
129 PF06234 TmoB: Toluene-4-monoo 34.0 2.6E+02 0.0056 22.8 8.8 72 206-278 4-83 (85)
130 PRK01777 hypothetical protein; 33.0 2.4E+02 0.0051 22.9 7.1 63 205-277 3-74 (95)
131 PF12436 USP7_ICP0_bdg: ICP0-b 32.9 53 0.0012 30.6 3.8 76 202-278 65-151 (249)
132 PRK11130 moaD molybdopterin sy 32.7 2.2E+02 0.0049 21.7 7.6 45 226-276 25-74 (81)
133 PF02505 MCR_D: Methyl-coenzym 32.3 1.3E+02 0.0028 27.0 5.8 60 202-271 64-124 (153)
134 cd01768 RA RA (Ras-associating 31.7 2.1E+02 0.0046 21.6 6.4 29 216-244 12-40 (87)
135 PF07011 DUF1313: Protein of u 31.3 58 0.0013 26.6 3.2 24 68-99 2-25 (87)
136 PRK08053 sulfur carrier protei 31.2 2.2E+02 0.0047 21.0 6.4 54 216-277 7-60 (66)
137 PF10209 DUF2340: Uncharacteri 30.3 1.9E+02 0.0042 24.9 6.4 59 218-277 16-106 (122)
138 PF05424 Duffy_binding: Duffy 30.2 33 0.00072 30.3 1.8 28 51-83 116-143 (182)
139 cd06410 PB1_UP2 Uncharacterize 30.1 1.7E+02 0.0036 23.9 5.7 40 210-251 17-56 (97)
140 PF15051 FAM198: FAM198 protei 29.7 60 0.0013 32.2 3.6 37 57-104 284-323 (326)
141 smart00144 PI3K_rbd PI3-kinase 29.6 2.7E+02 0.0058 22.8 7.0 73 205-279 17-104 (108)
142 TIGR03836 termin_org_HMW1 cyta 29.0 23 0.00049 28.2 0.5 24 96-120 22-46 (82)
143 KOG1364|consensus 29.0 76 0.0016 31.9 4.2 70 202-273 273-349 (356)
144 cd07233 Glyoxalase_I Glyoxalas 27.1 57 0.0012 24.9 2.5 37 84-120 76-119 (121)
145 PF02017 CIDE-N: CIDE-N domain 26.7 3.3E+02 0.0071 21.7 7.9 66 207-278 4-71 (78)
146 smart00314 RA Ras association 26.1 2.3E+02 0.0049 21.6 5.7 30 216-245 15-44 (90)
147 cd06398 PB1_Joka2 The PB1 doma 25.5 1.9E+02 0.0041 23.3 5.2 55 225-279 23-87 (91)
148 PRK12302 bssR biofilm formatio 25.4 52 0.0011 28.0 2.1 37 47-83 33-78 (127)
149 PRK07440 hypothetical protein; 25.4 3E+02 0.0065 20.8 6.6 60 206-277 5-64 (70)
150 PF04298 Zn_peptidase_2: Putat 24.5 65 0.0014 30.3 2.8 38 89-126 40-82 (222)
151 PF14908 DUF4496: Domain of un 24.0 1.1E+02 0.0024 25.6 3.9 47 71-127 2-54 (140)
152 PF00276 Ribosomal_L23: Riboso 24.0 1.8E+02 0.0038 23.2 4.8 42 216-257 20-62 (91)
153 cd01764 Urm1 Urm1-like ubuitin 23.7 1.6E+02 0.0036 23.5 4.6 54 221-277 23-88 (94)
154 COG4055 McrD Methyl coenzyme M 23.5 2.5E+02 0.0055 25.2 6.0 62 202-273 72-134 (165)
155 KOG3391|consensus 23.5 81 0.0018 28.0 2.9 30 254-284 112-141 (151)
156 KOG2507|consensus 23.4 1.7E+02 0.0038 30.4 5.7 78 201-280 310-392 (506)
157 PRK05863 sulfur carrier protei 23.4 3.1E+02 0.0066 20.2 5.9 53 216-277 7-59 (65)
158 PF13865 FoP_duplication: C-te 22.9 2.7E+02 0.0059 21.5 5.5 19 45-63 37-55 (74)
159 PF00794 PI3K_rbd: PI3-kinase 22.5 3.1E+02 0.0066 21.9 6.0 76 204-279 15-102 (106)
160 cd01816 Raf_RBD Ubiquitin doma 22.4 2.6E+02 0.0057 22.2 5.3 44 208-252 2-45 (74)
161 COG2104 ThiS Sulfur transfer p 22.2 3.4E+02 0.0073 20.8 5.8 54 216-277 9-62 (68)
162 PF03931 Skp1_POZ: Skp1 family 21.8 92 0.002 22.8 2.6 32 206-238 1-32 (62)
163 PF01191 RNA_pol_Rpb5_C: RNA p 21.6 1.2E+02 0.0026 23.8 3.3 44 233-282 20-63 (74)
164 PF09920 DUF2150: Uncharacteri 21.3 1.3E+02 0.0028 27.8 3.9 41 67-107 112-152 (190)
165 PTZ00380 microtubule-associate 21.2 1.2E+02 0.0026 26.1 3.4 59 222-280 46-106 (121)
166 PRK11840 bifunctional sulfur c 21.1 2.7E+02 0.0058 27.8 6.3 55 216-278 7-61 (326)
167 PRK09570 rpoH DNA-directed RNA 20.6 1.7E+02 0.0038 23.3 4.0 44 233-282 23-66 (79)
168 PF13605 DUF4141: Domain of un 20.5 52 0.0011 24.7 1.0 12 123-134 21-32 (55)
No 1
>KOG0013|consensus
Probab=100.00 E-value=4e-57 Score=406.87 Aligned_cols=221 Identities=46% Similarity=0.703 Sum_probs=199.9
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCHHHHHHhhhhhcccCCCCCCCHHHHHHHHHH
Q psy7993 1 MGSCLSIRRRNHPDHRNSFDNANAPNAGLRKNHPLCHEIIRWKSDVPLTEGQLRSKRDEFWDTAPAFEGRKEIWDALHAA 80 (300)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~pl~~~~~~w~s~~~~t~~~l~~~R~eFwdT~p~~~G~~EiW~aL~aA 80 (300)
||+|+++.|-...++ . +..+++|.||+|++..|+|+.|||++||+.||+|||||+|||+||+|||||||||
T Consensus 1 ~~~~~s~~r~a~~~~------~---~g~a~~~~~l~~~~~~~~~d~~lT~gqlrskRdEFWdTapAf~GrKEIWDaL~aa 71 (231)
T KOG0013|consen 1 MVQCLSGNRPAGVGN------N---GGEAPSNSPLLREPKLWTSDPPLTKGQLRSKRDEFWDTAPAFGGRKEIWDALHAA 71 (231)
T ss_pred CcccccCCCCccCCC------c---cccCCCCCchhcccccccCCCCcchhhhhhhhhhhhhcccccCCcHHHHHHHHHH
Confidence 899998666544332 2 2345899999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCHHHHHHHHhhcCeeeecCCchhheccCCCccccceeeechhhhhhhhccCccchhhhccccCCCCCCCCccc
Q psy7993 81 ASAAEGNDFQLAQAILDGANISVPNGFLTESYDELGNKYMVPVYCLSYLKFLLLHMSQPLRHVLVCANCYFPHPGFLTES 160 (300)
Q Consensus 81 ~~~~~~~d~~~Aq~il~aA~itlp~g~l~~~yD~~G~~Y~lP~~v~~~P~n~~~~~~~~~~~~~~~an~~~~~~~~~~E~ 160 (300)
+.++++||+++||+|||+|+||||+|+|+.|||++|+
T Consensus 72 ~ta~e~~d~e~Aqai~dgA~~tiP~g~l~ecydelg~------------------------------------------- 108 (231)
T KOG0013|consen 72 VTAAEEGDAEAAQAILDGADLTIPEGDLSECYDELGG------------------------------------------- 108 (231)
T ss_pred HHHHhcccHHHHHHHHhccccccCCcchHHHHHhhCC-------------------------------------------
Confidence 9999999999999999999999999999999999999
Q ss_pred hhhccCccccceeeccCccccccCCCCCCCccccccccCCCCCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHh
Q psy7993 161 YDELGNKYMVPVYCLSYPINITKETSGRDSPIEVFDLEEGVGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLE 240 (300)
Q Consensus 161 ~De~~~~y~lp~~~~s~p~Nl~~~~~~~~s~~e~~~~e~~~~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~e 240 (300)
.|++|.||++.|.|++.+..+.++.++. +++...+.++.+++|+++++++|.+.+...+||+++|++++.++
T Consensus 109 ------~y~~p~ycls~p~n~~~E~~d~~s~ei~--~ppp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aae 180 (231)
T KOG0013|consen 109 ------TYYEPIYCLSRPPNAFAERKDSESLEIP--EPPPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAE 180 (231)
T ss_pred ------eEeecceeeccCchHHHhhccccccccC--CCCCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhh
Confidence 6777777888888888776666654444 67788889999999999779999999999999999999999999
Q ss_pred CCCCCceEEEEcCeecCCCCCcccccCCCCC--CEEEEEecCCC
Q psy7993 241 GIETSKQRWYYGGKLLSDKMKISDIQNLASG--FVIQVIINNLA 282 (300)
Q Consensus 241 GIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G--~vI~vmV~kp~ 282 (300)
|+++-.|||||+|+.|-|+..|++| +|..| ++|+++|.+++
T Consensus 181 g~D~~sQrif~Sg~~l~dkt~LeEc-~iekg~rYvlqviVlq~~ 223 (231)
T KOG0013|consen 181 GVDPLSQRIFFSGGVLVDKTDLEEC-KIEKGQRYVLQVIVLQEP 223 (231)
T ss_pred ccchhhheeeccCCceeccccceee-eecCCCEEEEEEEeccCC
Confidence 9999999999999999999999999 99999 99999999864
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.78 E-value=8.8e-19 Score=133.12 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=71.0
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
|+|+||+.. |+.+.++|++++||++||++|++++|||+++|||+|+||+|+|..+|++| ||++|++||++++.|
T Consensus 1 m~i~vk~~~-G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQ-GRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDY-SIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHC-CCCCCCEEEEEEcCC
Confidence 689999998 99999999999999999999999999999999999999999999999999 999999999998754
No 3
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.77 E-value=1e-18 Score=133.08 Aligned_cols=70 Identities=43% Similarity=0.832 Sum_probs=67.6
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
+|||+.. |+.+.++|++++||++||++|++++|||+++|||+|+||+|+|+.+|.+| +|+.|++|||+|+
T Consensus 1 ~~vk~~~-G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~-~i~~~~tv~~~~~ 70 (70)
T cd01794 1 LKVRLST-GKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQET-KIQKDYVVQVIVN 70 (70)
T ss_pred CeEEcCC-CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHc-CCCCCCEEEEEeC
Confidence 5789988 99999999999999999999999999999999999999999999999999 9999999999985
No 4
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.74 E-value=7.6e-18 Score=130.75 Aligned_cols=74 Identities=20% Similarity=0.363 Sum_probs=69.5
Q ss_pred EEEEEEecCCCce-EEEE-EccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 206 IALKLRLSNTCQD-VRMK-VFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 206 I~VkVRlS~~Gkd-v~Ve-V~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
|+|+||+.. |+. +.++ +.+++||++||++|++.+|||+++|||+|+||+|+|+.+|++| ||++|++|+++++..
T Consensus 1 M~I~vk~~~-G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y-~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMD-GKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDY-NVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCC-CCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHc-CCCCCCEEEEEEecC
Confidence 689999998 886 6895 8999999999999999999999999999999999999999999 999999999999763
No 5
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.73 E-value=2.1e-17 Score=125.29 Aligned_cols=75 Identities=19% Similarity=0.380 Sum_probs=72.1
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCC--CCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGI--ETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGI--p~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|+|+||+.+ |+.+.++|.+++||++||++|++++|+ ++++|||+|.|++|+|+.+|.+| ||++|++|++++++|.
T Consensus 1 m~i~vk~~~-g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~i~~~~~~~~ 77 (77)
T cd01805 1 MKITFKTLK-QQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEY-KIDEKDFVVVMVSKPK 77 (77)
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHc-CCCCCCEEEEEEecCC
Confidence 689999998 999999999999999999999999999 99999999999999999999999 9999999999999874
No 6
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.71 E-value=3.5e-17 Score=125.92 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=68.8
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
+|.|+||... |+.+.++|++++||++||++|+++.|+++++|||+|.||+|+|+.+|++| ||++|++||+..
T Consensus 1 ~~~i~vkt~~-Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~y-gi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRL-GKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDY-EIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHc-CCCCCCEEEEEe
Confidence 5889999988 99999999999999999999999999999999999999999999999999 999999999863
No 7
>PTZ00044 ubiquitin; Provisional
Probab=99.71 E-value=4.7e-17 Score=123.27 Aligned_cols=73 Identities=26% Similarity=0.444 Sum_probs=70.4
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
|+|+||+.+ |+.+.++|++++||++||++|++..|||+++|||+|+|+.|+|..+|++| ++++|++||++++.
T Consensus 1 m~i~vk~~~-G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~-~i~~~~~i~l~~~~ 73 (76)
T PTZ00044 1 MQILIKTLT-GKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDY-KVVPGSTIHMVLQL 73 (76)
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHc-CCCCCCEEEEEEEc
Confidence 689999998 99999999999999999999999999999999999999999999999999 99999999999864
No 8
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.70 E-value=5.1e-17 Score=123.61 Aligned_cols=72 Identities=26% Similarity=0.306 Sum_probs=67.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
|+|+||. ++.+.++|++++||++||++|++++|||+++|||+|+||+|+|..+|++| ||+++++||++++-+
T Consensus 1 mqi~vk~---~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~-~i~~~~tl~l~~~l~ 72 (74)
T cd01793 1 MQLFVRA---QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQC-GVEELCTLEVAGRLL 72 (74)
T ss_pred CEEEEEC---CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHc-CCCCCCEEEEEEecC
Confidence 6889986 46899999999999999999999999999999999999999999999999 999999999988643
No 9
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.69 E-value=9.5e-17 Score=131.02 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=71.8
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
+.|+|+||+.. |+.+.++|.+++||++||++|++.+|||+++|||+|+||+|+|+.+|++| +|++|++||+++.-
T Consensus 26 ~~M~I~Vk~l~-G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-~I~~~stL~l~~~l 100 (103)
T cd01802 26 DTMELFIETLT-GTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY-NISEGCTLKLVLAM 100 (103)
T ss_pred CCEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEec
Confidence 45999999998 99999999999999999999999999999999999999999999999999 99999999998863
No 10
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.68 E-value=1.4e-16 Score=119.67 Aligned_cols=69 Identities=14% Similarity=0.299 Sum_probs=66.3
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|+||+.. |+.+.++|++++||++||++|+++.|+|+++|||+|+||.|+|..+|++| ||++|++||++.
T Consensus 1 i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~-~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNT-GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQEC-DLGQQSILHAVR 69 (70)
T ss_pred CEEEcCC-CCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEe
Confidence 5789888 99999999999999999999999999999999999999999999999999 999999999875
No 11
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.67 E-value=2.7e-16 Score=118.02 Aligned_cols=73 Identities=25% Similarity=0.488 Sum_probs=70.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
|+|+||+.+ |+.+.++|.+++||++||++|+++.|+|++.|||+|.|+.|.|+.+|++| ++++|++||++++.
T Consensus 1 m~i~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~-~i~~g~~i~l~~~~ 73 (76)
T cd01806 1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADY-KLEGGSVLHLVLAL 73 (76)
T ss_pred CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHc-CCCCCCEEEEEEEc
Confidence 689999998 99999999999999999999999999999999999999999999999999 99999999998864
No 12
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.67 E-value=2.6e-16 Score=121.59 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=69.4
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
|+|+||+.. |+.+.|+|+++.||++||++|+++.|+++++|||+|.||+|+|. +|.+| ||++|++|+++....
T Consensus 2 m~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~-gi~~~~~i~l~~~~~ 74 (78)
T cd01804 2 MNLNIHSTT-GTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDL-GLGDGSKLTLVPTVE 74 (78)
T ss_pred eEEEEEECC-CCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHc-CCCCCCEEEEEeecc
Confidence 789999998 99999999999999999999999999999999999999999999 99999 999999999987653
No 13
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=2.1e-16 Score=122.18 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=71.6
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEE--EEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRW--YYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRL--iy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|+|+||+.. |+.+.++|++++||++||++|+++.|+++++||| +|.|++|+|+.+|++| ||++|++|++++++..
T Consensus 3 ~~i~Vk~~~-G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~-gi~~gs~l~l~~~~~~ 79 (80)
T cd01792 3 WDLKVKMLG-GNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQ-GLGPGSTVLLVVQNCS 79 (80)
T ss_pred eEEEEEeCC-CCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHc-CCCCCCEEEEEEEccC
Confidence 789999988 9999999999999999999999999999999999 9999999999999999 9999999999998743
No 14
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=2e-16 Score=120.32 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=67.8
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
|+||+.. |+.+.++|++++||++||++|++..|||+++|||+|.||+|+|..+|++| ||++|++|++++.-
T Consensus 1 i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~-~i~~~~tl~l~~~l 71 (74)
T cd01810 1 ILVRNDK-GRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEY-GLKPGCTVFMNLRL 71 (74)
T ss_pred CEEECCC-CCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHc-CCCCCCEEEEEEEc
Confidence 6889998 99999999999999999999999999999999999999999999999999 99999999988753
No 15
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.66 E-value=4e-16 Score=115.98 Aligned_cols=71 Identities=25% Similarity=0.437 Sum_probs=68.6
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|+|+||... |+.+.+++.+++||++||++|++..|+|++.|||+|.|++|+|..+|.+| |+++|++||+++
T Consensus 1 i~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLD-SQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEY-KVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHC-CCCCCCEEEEEe
Confidence 689999998 99999999999999999999999999999999999999999999999999 999999999876
No 16
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.66 E-value=3.9e-16 Score=117.14 Aligned_cols=73 Identities=22% Similarity=0.416 Sum_probs=70.0
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
|+|+||... |+.+.++|++++||++||++|++..|+|+++|||+|.|+.|+|+.+|.+| |+++|++|+++++-
T Consensus 1 m~i~v~~~~-g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~i~l~~~~ 73 (76)
T cd01803 1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRL 73 (76)
T ss_pred CEEEEEcCC-CCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEc
Confidence 689999998 99999999999999999999999999999999999999999999999999 99999999998864
No 17
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.64 E-value=8.9e-16 Score=113.85 Aligned_cols=68 Identities=28% Similarity=0.458 Sum_probs=64.7
Q ss_pred EecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 211 RLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 211 RlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
|+.+ |+.+.|+|.+++||++||++|+++.|+|++.|+|+|.|+.|+|..+|.+| ||++|++|++++++
T Consensus 1 k~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~-~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLS-GKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDY-GIKDGSTIHLVIKP 68 (69)
T ss_dssp EETT-SEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGG-TTSTTEEEEEEESS
T ss_pred CCCC-CcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHc-CCCCCCEEEEEEec
Confidence 5666 89999999999999999999999999999999999999999999999999 99999999998864
No 18
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.64 E-value=7.3e-16 Score=116.25 Aligned_cols=71 Identities=14% Similarity=0.314 Sum_probs=66.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
|+|+||+.. |+ ..|++++++||++||++|+++.|+++++|||+|+||+|+|+.+|.+| ||++|++||++++
T Consensus 1 ~~i~vk~~~-g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~-~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPK-DK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQH-NIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCC-CC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHc-CCCCCCEEEEEEC
Confidence 578899887 76 58999999999999999999999999999999999999999999999 9999999998763
No 19
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.64 E-value=6.1e-16 Score=121.51 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=63.7
Q ss_pred eEEEEEEecCCCce--EEEEEccCchHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCcccccC--CCCCCEEEEEe
Q psy7993 205 EIALKLRLSNTCQD--VRMKVFTQETVAMIKKRLQSLEG--IETSKQRWYYGGKLLSDKMKISDIQN--LASGFVIQVII 278 (300)
Q Consensus 205 ~I~VkVRlS~~Gkd--v~VeV~~tdTV~~LK~kI~e~eG--Ip~~qQRLiy~GKiLkD~~tL~dyqg--Iq~G~vI~vmV 278 (300)
.|+|.||+++ ++. |.|++.+++||++||++|++..+ .++++|||||+||+|+|+.||++| + ++.|++||++.
T Consensus 1 ~i~l~IK~~~-~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~-~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPN-QKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDV-LRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCC-CCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHH-hhcccCCceEEEEe
Confidence 3789999998 665 77777999999999999999864 557999999999999999999999 7 99999999753
No 20
>KOG0005|consensus
Probab=99.62 E-value=3.3e-16 Score=117.76 Aligned_cols=70 Identities=26% Similarity=0.500 Sum_probs=67.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|.|++++.+ |+.+.++++++|+|..+|.+|++++||||.+|||||.||+|.|+.|-.+| ++.-|+|+|++
T Consensus 1 m~iKvktLt-~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y-~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHY-NLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeec-cceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHh-hhccceeEeeC
Confidence 468999998 99999999999999999999999999999999999999999999999999 99999999973
No 21
>KOG0013|consensus
Probab=99.60 E-value=4.2e-16 Score=141.62 Aligned_cols=91 Identities=31% Similarity=0.368 Sum_probs=86.9
Q ss_pred ccccccCCCCCHHHHHHhhhhhcccCCCCCCCHHHHHHHHHHHHhcccCCHHHHHHHHhhcCeeeecCCchhheccCCCc
Q psy7993 39 IIRWKSDVPLTEGQLRSKRDEFWDTAPAFEGRKEIWDALHAAASAAEGNDFQLAQAILDGANISVPNGFLTESYDELGNK 118 (300)
Q Consensus 39 ~~~w~s~~~~t~~~l~~~R~eFwdT~p~~~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA~itlp~g~l~~~yD~~G~~ 118 (300)
.+.|++..+.++.+|-..|++||+|.|+++|..|||.+||||.++ | ..||.|+.++++.+-+-+|++|||+.|++
T Consensus 138 ppp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~----D-~~sQrif~Sg~~l~dkt~LeEc~iekg~r 212 (231)
T KOG0013|consen 138 PPPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGV----D-PLSQRIFFSGGVLVDKTDLEECKIEKGQR 212 (231)
T ss_pred CCCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhcc----c-hhhheeeccCCceeccccceeeeecCCCE
Confidence 467999999999999999999999999999999999999999775 5 79999999999999999999999999999
Q ss_pred cccceeeechhhhhhh
Q psy7993 119 YMVPVYCLSYLKFLLL 134 (300)
Q Consensus 119 Y~lP~~v~~~P~n~~~ 134 (300)
|.||++|+.+|+|+.+
T Consensus 213 YvlqviVlq~~~Nl~~ 228 (231)
T KOG0013|consen 213 YVLQVIVLQEPKNLSP 228 (231)
T ss_pred EEEEEEeccCCCCCCC
Confidence 9999999999999985
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.60 E-value=2.3e-15 Score=114.31 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=63.1
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCC-CCcccccCCCCCCEEEE
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDK-MKISDIQNLASGFVIQV 276 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~-~tL~dyqgIq~G~vI~v 276 (300)
|+||+..+|+.+.|+|++++||++||++|++++|+|+++|||+|.||+|+|+ .+|++| ||++|++|++
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~-gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALY-GVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHc-CCCCCCEEEE
Confidence 4688883399999999999999999999999999999999999999999987 689999 9999999986
No 23
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=5.3e-15 Score=144.76 Aligned_cols=76 Identities=20% Similarity=0.397 Sum_probs=72.9
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhC---CCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEG---IETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eG---Ip~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|+|+||+.+ |+.+.|+|++++||.+||++|+++.| +++++|||||+||+|+|+.+|.+| ||++|++|++||++++
T Consensus 1 MkItVKtl~-g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy-~I~e~~~Ivvmv~k~k 78 (378)
T TIGR00601 1 MTLTFKTLQ-QQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREY-KIKEKDFVVVMVSKPK 78 (378)
T ss_pred CEEEEEeCC-CCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHc-CCCCCCEEEEEeccCC
Confidence 689999998 99999999999999999999999998 999999999999999999999999 9999999999999975
Q ss_pred C
Q psy7993 283 G 283 (300)
Q Consensus 283 ~ 283 (300)
.
T Consensus 79 ~ 79 (378)
T TIGR00601 79 T 79 (378)
T ss_pred C
Confidence 4
No 24
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.57 E-value=7.8e-15 Score=109.17 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=66.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|+|+||.. |+.+.++|++++||++||++|+++.|+|+++|||+|.|+.|.|..+|.+| ||++|++|++|.
T Consensus 1 i~i~vk~~--g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~-~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG--GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMS-GVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC--CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHc-CCCCCCEEEEec
Confidence 57888885 78999999999999999999999999999999999999999999999999 999999999874
No 25
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.56 E-value=1.1e-14 Score=111.54 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=63.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|+.+.|+|++++||++||++|++..|||+++|+|+|.|++|+|..+|++| +|++|++|+++++.+.
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~-~i~~g~~l~v~~~~~g 72 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYY-NLANGTIIHLQLKERG 72 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHc-CCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999999999999999999 9999999999987644
No 26
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.54 E-value=2.3e-14 Score=110.23 Aligned_cols=69 Identities=22% Similarity=0.377 Sum_probs=64.4
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEE---cCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYY---GGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy---~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+|.|+.. |+.+.|+|++++||++||++|++..|+|+++|+|+| .||+|+|+.+|.+| +|++|.+|++|
T Consensus 1 ~~i~vk~~--g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~-~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKWG--GQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL-KLKPNTKIMMM 72 (74)
T ss_pred CEEEEEEC--CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc-CCCCCCEEEEE
Confidence 45677765 799999999999999999999999999999999996 99999999999999 99999999987
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.52 E-value=1.4e-13 Score=108.38 Aligned_cols=81 Identities=17% Similarity=0.338 Sum_probs=75.6
Q ss_pred CCCCCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 199 EGVGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 199 ~~~~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
+......|+|+|+..+ |+.+.+.|.+++||+.||.+++++.||++++|||+|.|+.|.+..|+.+| ++++|++|+|++
T Consensus 5 ~~~~~~~i~I~v~~~~-g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l-~m~d~d~I~v~l 82 (87)
T cd01763 5 KGEISEHINLKVKGQD-GNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDL-GMEDGDEIEVML 82 (87)
T ss_pred CCCCCCeEEEEEECCC-CCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHc-CCCCCCEEEEEE
Confidence 4455678999999997 99999999999999999999999999999999999999999999999999 999999999998
Q ss_pred cCC
Q psy7993 279 NNL 281 (300)
Q Consensus 279 ~kp 281 (300)
+..
T Consensus 83 ~l~ 85 (87)
T cd01763 83 EQT 85 (87)
T ss_pred ecc
Confidence 653
No 28
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.50 E-value=3.2e-14 Score=118.49 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=68.7
Q ss_pred ceEEEEEEecCCCceEE-EEEccCchHHHHHHHHH-----HHhCCC--CCceEEEEcCeecCCCCCcccccC------CC
Q psy7993 204 QEIALKLRLSNTCQDVR-MKVFTQETVAMIKKRLQ-----SLEGIE--TSKQRWYYGGKLLSDKMKISDIQN------LA 269 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~-VeV~~tdTV~~LK~kI~-----e~eGIp--~~qQRLiy~GKiLkD~~tL~dyqg------Iq 269 (300)
+.+-||+|+.+ |.|+- ..+.+++||++||++|+ .++|+| +++|||||+||+|+|..||++| + +.
T Consensus 3 ~~~e~kfrl~d-g~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~-~~p~g~~~~ 80 (113)
T cd01814 3 EQIEIKFRLYD-GSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGEC-RSPVGDIAG 80 (113)
T ss_pred ccEEEEEEccC-CCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHh-CCcccccCC
Confidence 57899999999 87764 67889999999999999 445666 8999999999999999999999 9 77
Q ss_pred CCCEEEEEecCCCCC
Q psy7993 270 SGFVIQVIINNLAGP 284 (300)
Q Consensus 270 ~G~vI~vmV~kp~~p 284 (300)
...|+||+++.|...
T Consensus 81 ~~~TmHvvlr~~~~~ 95 (113)
T cd01814 81 GVITMHVVVQPPLAD 95 (113)
T ss_pred CceEEEEEecCCCCC
Confidence 779999999776543
No 29
>KOG0010|consensus
Probab=99.47 E-value=1.2e-13 Score=138.02 Aligned_cols=80 Identities=15% Similarity=0.303 Sum_probs=74.3
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+||+.+ + ++.|.|..+.||.+||++|....++++++|+|||.||+|||..||..| ||++|+|||++++.+..
T Consensus 14 ~~irV~Vkt~~-d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~-gI~Dg~TvHLVik~~~~ 90 (493)
T KOG0010|consen 14 SLIRVTVKTPK-D-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQY-GIQDGHTVHLVIKSQPR 90 (493)
T ss_pred ceeEEEEecCC-c-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHc-CCCCCcEEEEEeccCCC
Confidence 46899999987 4 899999999999999999999999999999999999999999999999 99999999999988766
Q ss_pred CCC
Q psy7993 284 PKL 286 (300)
Q Consensus 284 p~~ 286 (300)
+.+
T Consensus 91 ~~~ 93 (493)
T KOG0010|consen 91 PTG 93 (493)
T ss_pred CCC
Confidence 655
No 30
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.47 E-value=6.1e-14 Score=109.37 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=49.0
Q ss_pred cCchHHHHHHHHHHH--hCCC-CCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 225 TQETVAMIKKRLQSL--EGIE-TSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 225 ~tdTV~~LK~kI~e~--eGIp-~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
.++||++||++|+++ +|++ +++|||||+||+|+|+.||++| ||++|++||++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dy-gI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFY-GIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHc-CCCCCCEEEEEe
Confidence 478999999999999 4675 8999999999999999999999 999999999865
No 31
>KOG0011|consensus
Probab=99.44 E-value=2.5e-13 Score=130.22 Aligned_cols=75 Identities=21% Similarity=0.407 Sum_probs=72.8
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEG--IETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eG--Ip~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|+|+||+.+ +..|++++.+.+||.++|++|+...| +|.++|+|||.||+|+|..|+.+| +|+++.+|.||++|++
T Consensus 1 m~lt~KtL~-q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Ey-kv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLK-QQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEY-KVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeecc-CceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhh-ccccCceEEEEEecCc
Confidence 689999999 99999999999999999999999998 999999999999999999999999 9999999999999986
No 32
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.44 E-value=4e-13 Score=103.87 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=61.8
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecC-CCCCcccccCCC-CCCEEEEEe
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLS-DKMKISDIQNLA-SGFVIQVII 278 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLk-D~~tL~dyqgIq-~G~vI~vmV 278 (300)
.|.=+.+. |.++.|+|.+++||++||++|++++|||+++||| |.|+.|. |..+|++| |++ +|+++++.+
T Consensus 4 ~~~~~~~~-~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~y-gi~~~g~~~~l~~ 74 (75)
T cd01799 4 SVEDAQSH-TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSH-GIRTNGDSAFLYI 74 (75)
T ss_pred EEeccccC-CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHc-CCCCCCCEEEEEe
Confidence 34445666 8999999999999999999999999999999999 9999985 77999999 999 889999875
No 33
>KOG0004|consensus
Probab=99.44 E-value=5.4e-14 Score=122.55 Aligned_cols=72 Identities=22% Similarity=0.439 Sum_probs=69.5
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
|+|+|+..+ ++.+.++|...+||..+|.|||+.+|||+++|||||.|+.|+|..+|+|| +|+...+||+++.
T Consensus 1 m~ifVk~l~-~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY-~Iqkestl~l~l~ 72 (156)
T KOG0004|consen 1 MQIFVKTLT-GKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 72 (156)
T ss_pred Cccchhhcc-ccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccc-cccccceEEEEEE
Confidence 579999998 99999999999999999999999999999999999999999999999999 9999999999875
No 34
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.41 E-value=6.9e-13 Score=95.43 Aligned_cols=64 Identities=30% Similarity=0.545 Sum_probs=60.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGF 272 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~ 272 (300)
|+|+||..+ +.+.++|.++.||++||++|++..|+|++.|||+|.|+.|.|..+|.+| ||++|+
T Consensus 1 ~~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~-~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD--GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADY-NIQDGS 64 (64)
T ss_pred CEEEEEECC--ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHc-CCcCCC
Confidence 578999886 5899999999999999999999999999999999999999999999999 999874
No 35
>KOG0003|consensus
Probab=99.40 E-value=4.3e-14 Score=117.28 Aligned_cols=71 Identities=21% Similarity=0.424 Sum_probs=66.3
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
+++++... |+++.|+|++++||..||.+|+.++|||+++|||+|.||+|+|..||.+| ||+..+|||++.+
T Consensus 2 ~~~~~~~~-GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y-~i~~~~Tl~~~~r 72 (128)
T KOG0003|consen 2 QIFVKTLT-GKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 72 (128)
T ss_pred cEEEEEee-CceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCccccc-CccchhhhhhhHH
Confidence 56666666 99999999999999999999999999999999999999999999999999 9999999998654
No 36
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.28 E-value=1.8e-11 Score=89.05 Aligned_cols=67 Identities=25% Similarity=0.516 Sum_probs=62.6
Q ss_pred EEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 210 LRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 210 VRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
||..+ |+.+.+.+.++.||++||++|++..|++++.|+|+|.||.|+|..+|.+| ++++|.+|+++.
T Consensus 2 v~~~~-~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~-~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLT-GKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDY-GIQDGSTLHLVL 68 (69)
T ss_pred eEccC-CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHC-CCCCCCEEEEEE
Confidence 45555 89999999999999999999999999999999999999999999999999 999999999875
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.22 E-value=5.1e-11 Score=89.31 Aligned_cols=71 Identities=27% Similarity=0.428 Sum_probs=65.7
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCC-CceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIET-SKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~-~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|+|+||..+ |+.+.+.|.++++|..|++++.++.|++. +.++|+|.|+.|.++.|+.++ +|++|++|+|++
T Consensus 1 I~i~v~~~~-~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~-~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQD-GKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL-GIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETT-SEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH-T-STTEEEEEE-
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC-CCCCCCEEEEEC
Confidence 789999987 89999999999999999999999999999 999999999999999999999 999999999975
No 38
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.15 E-value=9.1e-11 Score=96.38 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=60.5
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecC-CCCCcccccCCCCCCEEEEEecCCC
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLS-DKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLk-D~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
++..++|++++||++||.+|++.+++++.+|+|+|.|+.|. |..||++| ||..|++|.+.+.-|.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssy-Gv~sgSvl~LlideP~ 80 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTL-GVIPESVILLKADEPI 80 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhc-CCCCCCEEEEEecCCc
Confidence 47889999999999999999999999999999999999995 68899999 9999999999987655
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.06 E-value=1.3e-09 Score=85.70 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=63.0
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEE-EEcCe-----ec-CCCCCcccccCCCCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRW-YYGGK-----LL-SDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRL-iy~GK-----iL-kD~~tL~dyqgIq~G~vI~vmV 278 (300)
++|.|..+.+....+..+.++.||.+||.||+...|++++.||| +|.|+ .| +|..+|..| |+++|+.|||.-
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y-~~~dg~~IhVvD 80 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSY-PVDDGCRIHVID 80 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeec-cCCCCCEEEEEe
Confidence 56677665434566667999999999999999999999999999 69999 45 789999999 999999999865
Q ss_pred cCC
Q psy7993 279 NNL 281 (300)
Q Consensus 279 ~kp 281 (300)
..|
T Consensus 81 ~~p 83 (84)
T cd01789 81 VSG 83 (84)
T ss_pred CCC
Confidence 444
No 40
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.00 E-value=2.8e-09 Score=88.58 Aligned_cols=76 Identities=29% Similarity=0.402 Sum_probs=58.1
Q ss_pred ceEEEEEEecCCCc-eEEEEEccCchHHHHHHHHHHHh--C-----CCCCceEEEEcCeecCCCCCcccccCCCCCC---
Q psy7993 204 QEIALKLRLSNTCQ-DVRMKVFTQETVAMIKKRLQSLE--G-----IETSKQRWYYGGKLLSDKMKISDIQNLASGF--- 272 (300)
Q Consensus 204 ~~I~VkVRlS~~Gk-dv~VeV~~tdTV~~LK~kI~e~e--G-----Ip~~qQRLiy~GKiLkD~~tL~dyqgIq~G~--- 272 (300)
+.|.||+|+.+ |. ...+.+++++||++||++|..+. + ..++..||||.||+|.|+.||.++ ++..|.
T Consensus 1 ~~i~lkf~l~~-G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~-~~~~~~~~~ 78 (111)
T PF13881_consen 1 DKIELKFRLAD-GKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDC-RLPSGETPG 78 (111)
T ss_dssp TSEEEEEEETT-S-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGG-T--TTSETT
T ss_pred CeEEEEEEEeC-CCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHh-CCCCCCCCC
Confidence 35899999998 88 56789999999999999999753 1 123678999999999999999999 999876
Q ss_pred ---EEEEEecCC
Q psy7993 273 ---VIQVIINNL 281 (300)
Q Consensus 273 ---vI~vmV~kp 281 (300)
++|++|+.+
T Consensus 79 ~~~vmHlvvrp~ 90 (111)
T PF13881_consen 79 GPTVMHLVVRPN 90 (111)
T ss_dssp --EEEEEEE-SS
T ss_pred CCEEEEEEecCC
Confidence 688877553
No 41
>KOG0001|consensus
Probab=98.98 E-value=4.4e-09 Score=75.21 Aligned_cols=72 Identities=22% Similarity=0.483 Sum_probs=66.1
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
+++++.. |+.+.+++.++++|..+|.+|+...|++..+|+++|.|+.|.|..+|.+| +|..+.++++..+..
T Consensus 2 ~~~~~~~-gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~-~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLD-GKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADY-NIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecC-CCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHh-CCCCCCEEEEEEecC
Confidence 4566655 99999999999999999999999999999999999999999999999999 999999999877543
No 42
>KOG4248|consensus
Probab=98.75 E-value=1.3e-08 Score=109.06 Aligned_cols=73 Identities=22% Similarity=0.342 Sum_probs=68.1
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
+.|+||+++ .+.-++.|...+||+++|..|.++.+|+.++|||||.||+|.|++++.+| +| +|.||||+=+.|
T Consensus 3 ~~v~vktld-~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~-~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 3 PNVLVKTLD-SRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEY-NV-DGKVIHLVERPP 75 (1143)
T ss_pred cceeeeecc-cceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhc-cC-CCeEEEeeccCC
Confidence 458999998 89999999999999999999999999999999999999999999999999 99 999999866533
No 43
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.74 E-value=7.1e-08 Score=75.57 Aligned_cols=75 Identities=25% Similarity=0.339 Sum_probs=59.4
Q ss_pred EEEEEEecCC-CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEc--------CeecCCCCCcccccCCCCCCEEEE
Q psy7993 206 IALKLRLSNT-CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYG--------GKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 206 I~VkVRlS~~-Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~--------GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
|+|.|..+.. +..++..+..+.||++||.+|+...|+|++.|||.|. -....|..+|..| |+++|++|||
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y-~~~dg~~i~V 80 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSY-GIKDGMRIHV 80 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHH-T-STTEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecC-CCCCCCEEEE
Confidence 5677766552 2589999999999999999999999999999999887 1233679999999 9999999998
Q ss_pred EecCC
Q psy7993 277 IINNL 281 (300)
Q Consensus 277 mV~kp 281 (300)
.=..|
T Consensus 81 ~D~~p 85 (87)
T PF14560_consen 81 VDTNP 85 (87)
T ss_dssp EE-T-
T ss_pred EeCCC
Confidence 65444
No 44
>PLN02560 enoyl-CoA reductase
Probab=98.61 E-value=9.7e-08 Score=91.63 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=59.5
Q ss_pred EEEEEEecCCCceE---EEEEccCchHHHHHHHHHHHhCC-CCCceEEEEc---C----eecCCCCCcccccCCCCCCEE
Q psy7993 206 IALKLRLSNTCQDV---RMKVFTQETVAMIKKRLQSLEGI-ETSKQRWYYG---G----KLLSDKMKISDIQNLASGFVI 274 (300)
Q Consensus 206 I~VkVRlS~~Gkdv---~VeV~~tdTV~~LK~kI~e~eGI-p~~qQRLiy~---G----KiLkD~~tL~dyqgIq~G~vI 274 (300)
|+|.|+..+ |+.+ +|+++++.||++||++|+++.++ ++++|||+|. | +.|+|+.+|.++ |+++|++|
T Consensus 1 M~I~Vk~~~-Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~-gv~~gstL 78 (308)
T PLN02560 1 MKVTVVSRS-GREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDY-GLGDGGTV 78 (308)
T ss_pred CEEEEEcCC-CCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhc-CCCCCceE
Confidence 467777555 7876 79999999999999999999986 8899999983 4 489999999999 99999987
Q ss_pred EE
Q psy7993 275 QV 276 (300)
Q Consensus 275 ~v 276 (300)
++
T Consensus 79 y~ 80 (308)
T PLN02560 79 VF 80 (308)
T ss_pred EE
Confidence 64
No 45
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.57 E-value=3.9e-07 Score=60.97 Aligned_cols=67 Identities=27% Similarity=0.432 Sum_probs=60.1
Q ss_pred EEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 210 LRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 210 VRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|++.+ +..+.+.+.+..||++||++|.++.|+++..|+|++.|+.+++...+.++ ++.+|.+|+++.
T Consensus 2 v~~~~-~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLND-GKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDY-GLQDGDELVLVP 68 (69)
T ss_pred eEecC-CCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEe
Confidence 34444 78899999999999999999999999999999999999999999988888 999999998753
No 46
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.43 E-value=5.8e-07 Score=69.11 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=46.8
Q ss_pred ccCchHHHHHHHHHHHhC-CCCCceEE--EEcCeecCCCCCcccccCCCCCCEEEE
Q psy7993 224 FTQETVAMIKKRLQSLEG-IETSKQRW--YYGGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 224 ~~tdTV~~LK~kI~e~eG-Ip~~qQRL--iy~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
.++.||++||+.|+++.+ +++++||| .+.|+.|+|+.+|.+| |+++|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~-gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDL-GVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhc-CCCCCCEEEE
Confidence 578899999999999875 57899988 5899999999999999 9999999875
No 47
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.34 E-value=2.1e-06 Score=72.20 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=60.5
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCC-------CCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNL-------ASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgI-------q~G~vI~vmV 278 (300)
|-|.||=. ..++-+++.++.||.+||++|+.....|++.||||-.+.+|+|.+||.+| |+ +...+|-+.+
T Consensus 3 vFlmIrR~--KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~-g~t~~~akaq~pA~vgLa~ 79 (119)
T cd01788 3 VFLMIRRH--KTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDC-GFTSQTARPQAPATVGLAF 79 (119)
T ss_pred eEEEEEec--ceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHc-CccccccccCCCCeEEEEE
Confidence 34444432 35788899999999999999999999999999999777899999999999 99 6677777777
Q ss_pred cC
Q psy7993 279 NN 280 (300)
Q Consensus 279 ~k 280 (300)
++
T Consensus 80 r~ 81 (119)
T cd01788 80 RS 81 (119)
T ss_pred ec
Confidence 64
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.13 E-value=5.5e-06 Score=65.11 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=43.9
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEc---Ceec--CCCCCcccccCCCCCCEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYG---GKLL--SDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~---GKiL--kD~~tL~dyqgIq~G~vI~v 276 (300)
..|-||||..+ ....|++++++||.+||++|++..+++...|.|+.. ...| .+..+|.++ ||+.|+.|.+
T Consensus 3 ~~milRvrS~d--G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~l-glkHGdmlyL 77 (80)
T PF11543_consen 3 SSMILRVRSKD--GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSL-GLKHGDMLYL 77 (80)
T ss_dssp ---EEEEE-SS--EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT----TT-EEE-
T ss_pred ccEEEEEECCC--CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHc-CCCCccEEEE
Confidence 45889999875 788899999999999999999999999988877432 1234 468899998 9999999975
No 49
>KOG1872|consensus
Probab=97.93 E-value=2.2e-05 Score=79.03 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=74.2
Q ss_pred EEEEEEecCCCceEEEE-EccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC--
Q psy7993 206 IALKLRLSNTCQDVRMK-VFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA-- 282 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~Ve-V~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~-- 282 (300)
++|.||-+ |+.+.++ ++..+|+..+|.+|....|++|++|++.+.|+.|+|+-.+... +|++|.+|++|=+.-.
T Consensus 4 ~~v~VKW~--gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al-~iKpn~~lmMmGt~e~~~ 80 (473)
T KOG1872|consen 4 DTVIVKWG--GKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGAL-QIKPNETLMMMGTAEAGL 80 (473)
T ss_pred ceEeeeec--CccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccccccccccc-ccCCCCEEEeeccccccc
Confidence 56777765 7888888 9999999999999999999999999999999999999777776 9999999998877643
Q ss_pred CCCCCCCcccCCCcc
Q psy7993 283 GPKLVPPVESMKSVT 297 (300)
Q Consensus 283 ~p~~~~~~~~~~~~~ 297 (300)
.+..+|++.+.++++
T Consensus 81 e~p~~~~~~~ed~~e 95 (473)
T KOG1872|consen 81 EPPSLPPTFIEDSAE 95 (473)
T ss_pred cCcccCCcchhhhhH
Confidence 445556666666553
No 50
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.84 E-value=3.7e-05 Score=62.69 Aligned_cols=58 Identities=26% Similarity=0.423 Sum_probs=48.0
Q ss_pred EEEEecCCCceEEEEEc--cCchHHHHHHHHHHHhC--CCCCceEEEEcCeecCCCCCcccc
Q psy7993 208 LKLRLSNTCQDVRMKVF--TQETVAMIKKRLQSLEG--IETSKQRWYYGGKLLSDKMKISDI 265 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~--~tdTV~~LK~kI~e~eG--Ip~~qQRLiy~GKiLkD~~tL~dy 265 (300)
|.||.++.-.|+.|+|. .+.||..||+.|.+..+ .....+||||.||+|.|...|...
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 55666664589999998 89999999999999983 333567999999999999998864
No 51
>KOG0006|consensus
Probab=97.78 E-value=5.7e-05 Score=73.53 Aligned_cols=64 Identities=14% Similarity=0.307 Sum_probs=59.4
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
..+.|+|+.+.+|.+||+-++.+.|+|+++.|+||.||.|.+..|++.+ .+..-+++|+|.-.|
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~c-DL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNC-DLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecc-cccccchhhhhccCc
Confidence 5788999999999999999999999999999999999999999999998 999999999985554
No 52
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.10 E-value=0.0054 Score=47.01 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=60.4
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCc-eEEE--EcCeecCCC--CCcccccCCCCCCEEEE
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSK-QRWY--YGGKLLSDK--MKISDIQNLASGFVIQV 276 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~q-QRLi--y~GKiLkD~--~tL~dyqgIq~G~vI~v 276 (300)
...+.|+||+.+ |+.+...+.+++||.+|..-|..+...+... -+|+ |-.+.|.+. .||.++ |+.++.+|+|
T Consensus 4 ~~~~~I~vRlpd-G~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~-~l~p~~~l~v 80 (82)
T PF00789_consen 4 SDVVRIQVRLPD-GSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEA-GLLPSATLIV 80 (82)
T ss_dssp SSEEEEEEEETT-STEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCC-TTSSCEEEEE
T ss_pred CCEEEEEEECCC-CCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHh-cCCCCeEEEE
Confidence 357899999998 9999999999999999999999887766553 4564 667888654 699998 9999999875
No 53
>KOG3493|consensus
Probab=97.06 E-value=0.00024 Score=54.74 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=54.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+.|...+.|||+++|+.|+.+.|--+++..|=--+-+++|.-+|++| .|.+|.-+.+.
T Consensus 11 GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dy-eihdg~~lely 71 (73)
T KOG3493|consen 11 GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDY-EIHDGMNLELY 71 (73)
T ss_pred CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeE-EeccCccEEEe
Confidence 89999999999999999999999999988877665556689999999999 99999877654
No 54
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.04 E-value=0.0042 Score=49.12 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=59.0
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEc---C--eecCCCCCcccccCCCCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYG---G--KLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~---G--KiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|+|.|+-.. ..++.+.|+|..+|..||.+|....|++- +|||.|. | ..|.+..+|++| ||=.+-.|.++=
T Consensus 1 iqVtV~q~g-~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~y-GiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTG-YSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADY-GIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecC-CCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhh-cceeccEEEEEe
Confidence 466776554 68999999999999999999999999984 9999994 3 357899999999 998888887764
No 55
>KOG1769|consensus
Probab=96.95 E-value=0.0079 Score=49.62 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=68.1
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
..-|+|||.- ..+..+.+.|..+.+...|++...+..|++..+.|++|.|+.+.+..|-.+. +..+|++|-|+..+.
T Consensus 18 ~~hi~LKV~g-qd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L-~mEd~D~Iev~~~q~ 94 (99)
T KOG1769|consen 18 SEHINLKVKG-QDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADL-EMEDGDEIEVVQEQT 94 (99)
T ss_pred cceEEEEEec-CCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhh-CCcCCcEEEEEeecc
Confidence 3557777766 3377889999999999999999999999999999999999999999999998 999999999887654
No 56
>KOG4495|consensus
Probab=96.65 E-value=0.0036 Score=51.77 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=50.4
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC--eecCCCCCcccccCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG--KLLSDKMKISDIQNLA 269 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G--KiLkD~~tL~dyqgIq 269 (300)
+-|+||-- ..++-++..++.||-+||++++....-|++.|||+-+. ..|.|..||.++ |+.
T Consensus 3 ~f~~VrR~--kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~-gft 65 (110)
T KOG4495|consen 3 VFLRVRRH--KTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDC-GFT 65 (110)
T ss_pred eeeeeeec--ceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhc-ccc
Confidence 45556543 35788899999999999999999999999999998754 578999999997 543
No 57
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.26 E-value=0.035 Score=42.75 Aligned_cols=71 Identities=7% Similarity=0.123 Sum_probs=57.5
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEE--EEcCeecCC---CCCcccccCCCCCCEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRW--YYGGKLLSD---KMKISDIQNLASGFVIQV 276 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRL--iy~GKiLkD---~~tL~dyqgIq~G~vI~v 276 (300)
+..+|.||+.+ |+.+...+..++||++|.+-|....+.....-+| -|-.|.|.+ +.||.+. |+.++.++.|
T Consensus 3 ~~~~I~iRlPd-G~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~-gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPD-GSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLEL-ALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHC-CCCCceEEEE
Confidence 56899999998 9999999999999999999997666655444555 356777864 4799998 9999888865
No 58
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.25 E-value=0.017 Score=44.60 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=48.8
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCC---Cce---EEE-EcCeecCCCCCcccccCCCCCCEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIET---SKQ---RWY-YGGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~---~qQ---RLi-y~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
+.|.|.... |+.+.|.+....+|++|...|.+..+++. ..+ +|. -.|..|.++.||.++ ||.+|+++.+
T Consensus 3 ~rVtv~~~~-~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~-gV~dGd~L~L 78 (79)
T PF08817_consen 3 CRVTVDAGN-GRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADA-GVRDGDVLVL 78 (79)
T ss_dssp EEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGG-T--TT-EEEE
T ss_pred EEEEEEcCC-CcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHc-CCCCCCEEEe
Confidence 566666654 68999999999999999999999888754 222 333 469999999999998 9999999975
No 59
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.12 E-value=0.043 Score=42.88 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=56.1
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCC-CCceEEE--EcCeecCC-CCCcccccCCCCCCEEEE
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIE-TSKQRWY--YGGKLLSD-KMKISDIQNLASGFVIQV 276 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp-~~qQRLi--y~GKiLkD-~~tL~dyqgIq~G~vI~v 276 (300)
..+|.||+.+ |+.++..+..++||++|.+=|....+-+ ...-.|. |=.|.|.| +.||.++ |+....++|-
T Consensus 4 ~t~iqiRlpd-G~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~ea-gL~~s~v~q~ 77 (79)
T cd01770 4 TTSIQIRLAD-GKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEA-NLLNAVIVQR 77 (79)
T ss_pred eeEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHC-CCcCcEEEEE
Confidence 4789999998 9999999999999999999999875432 2334554 66888854 8899999 9998777664
No 60
>KOG4583|consensus
Probab=96.00 E-value=0.00087 Score=65.64 Aligned_cols=92 Identities=24% Similarity=0.283 Sum_probs=66.2
Q ss_pred eEEEEEEecCC-CceEEEEEccCchHHHHHHHHHHHhC-CCC-CceEEEEcCeecCCCCCcccccCC--CCCCEEEEEec
Q psy7993 205 EIALKLRLSNT-CQDVRMKVFTQETVAMIKKRLQSLEG-IET-SKQRWYYGGKLLSDKMKISDIQNL--ASGFVIQVIIN 279 (300)
Q Consensus 205 ~I~VkVRlS~~-Gkdv~VeV~~tdTV~~LK~kI~e~eG-Ip~-~qQRLiy~GKiLkD~~tL~dyqgI--q~G~vI~vmV~ 279 (300)
.+++.+|.+.- -+|+.|..+..-||++||..++...- =|. ..|||||+||.|.|...|.+. =+ ++.|++|++-+
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~-lrkq~k~Hv~hlvcn 87 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW-LRKQVKEHVKHLVCN 87 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH-HHHHHHHHHHHHhcC
Confidence 46788887752 37899999999999999999988753 332 569999999999999999874 33 34688887554
Q ss_pred CCC---CCCCCCCcccCCCcc
Q psy7993 280 NLA---GPKLVPPVESMKSVT 297 (300)
Q Consensus 280 kp~---~p~~~~~~~~~~~~~ 297 (300)
.+. .|+..+-|.+++++-
T Consensus 88 sk~v~~~~e~~~sva~~~~ep 108 (391)
T KOG4583|consen 88 SKEVVTQPELIFSVASSNNEP 108 (391)
T ss_pred CCCCCCcHHhhccccccccCc
Confidence 433 333445555555443
No 61
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.79 E-value=0.092 Score=41.68 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=58.7
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC--eecC--------CCCCcccccCCCCCCE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG--KLLS--------DKMKISDIQNLASGFV 273 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G--KiLk--------D~~tL~dyqgIq~G~v 273 (300)
+.++|.||+.+ |..+.-.+..++||++|-.=|... +..+..-+|+++= |.|. ...||.+. ||.+..+
T Consensus 3 ~~~~I~iRlp~-G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea-GL~~s~~ 79 (85)
T cd01774 3 DTVKIVFKLPN-GTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA-GLSNSEV 79 (85)
T ss_pred ceEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHc-CCCCccE
Confidence 56899999999 999999999999999999999754 4455777888776 7885 36799999 9998888
Q ss_pred EEE
Q psy7993 274 IQV 276 (300)
Q Consensus 274 I~v 276 (300)
+.|
T Consensus 80 L~V 82 (85)
T cd01774 80 LFV 82 (85)
T ss_pred EEE
Confidence 765
No 62
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.44 E-value=0.11 Score=39.55 Aligned_cols=68 Identities=12% Similarity=0.269 Sum_probs=52.7
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE--EcCeecCC---CCCcccccCCCCCCEEE
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY--YGGKLLSD---KMKISDIQNLASGFVIQ 275 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi--y~GKiLkD---~~tL~dyqgIq~G~vI~ 275 (300)
..+|+||+.+ |+.+......++||++|.+=|.....- ...-+|+ |-.|.|.| +.||.+. |+.+..+++
T Consensus 2 ~t~i~iRlpd-G~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~-gL~~s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPD-GKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEA-GLVNEVVFQ 74 (77)
T ss_pred cEEEEEEcCC-CCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHc-CCccceEEE
Confidence 3689999998 999999999999999999999876543 2334454 45677754 8899999 999655544
No 63
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.14 E-value=0.37 Score=37.37 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=55.7
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEE--EEcCeecCC---CCCcccccCCCCCCEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRW--YYGGKLLSD---KMKISDIQNLASGFVIQV 276 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRL--iy~GKiLkD---~~tL~dyqgIq~G~vI~v 276 (300)
...+|.||+.+ |..+...+..++||.+|.+-|....+-. ..-.| -|--|.+.+ +.||.+. |+.+..+|.|
T Consensus 3 ~~~~i~iRlp~-G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~el-gL~Psa~L~v 77 (79)
T cd01772 3 TETRIQIRLLD-GTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQEL-GLVPSAVLIV 77 (79)
T ss_pred cEEEEEEECCC-CCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHC-CCCCceEEEE
Confidence 35789999998 9999999999999999999998765432 22344 356778853 5899998 9999988875
No 64
>KOG3206|consensus
Probab=94.01 E-value=0.15 Score=47.39 Aligned_cols=73 Identities=23% Similarity=0.362 Sum_probs=56.3
Q ss_pred EEEEEEecCCCce--EEEEEccCchHHHHHHHHHHHhCCCCCceEE-EEcC-----eec-CCCCCcccccCCCCCCEEEE
Q psy7993 206 IALKLRLSNTCQD--VRMKVFTQETVAMIKKRLQSLEGIETSKQRW-YYGG-----KLL-SDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 206 I~VkVRlS~~Gkd--v~VeV~~tdTV~~LK~kI~e~eGIp~~qQRL-iy~G-----KiL-kD~~tL~dyqgIq~G~vI~v 276 (300)
++|.|-.+ -.+ ....+.++.||+++|.||.-..|.+++.++| +|.| -.| .+...|..| +..+|..|||
T Consensus 2 v~v~Iss~--~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~-~~~Dg~rihv 78 (234)
T KOG3206|consen 2 VRVVISSS--LNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFY-KVEDGLRIHV 78 (234)
T ss_pred eEEEEecc--cccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCccccccc-CCCCceEEEE
Confidence 34444333 344 5567789999999999999999999999987 6776 235 467789998 9999999998
Q ss_pred EecCC
Q psy7993 277 IINNL 281 (300)
Q Consensus 277 mV~kp 281 (300)
+=+.+
T Consensus 79 iD~~~ 83 (234)
T KOG3206|consen 79 IDSNA 83 (234)
T ss_pred EecCc
Confidence 75543
No 65
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=93.52 E-value=0.3 Score=37.27 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEE
Q psy7993 215 TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQ 275 (300)
Q Consensus 215 ~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~ 275 (300)
.++.++|.|.++.|+.+|-+..-++.|+++++=.|.|.+|.|+-..++.-. |+..|..+.
T Consensus 5 ~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~s-nL~n~akLe 64 (65)
T PF11470_consen 5 NFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLS-NLPNNAKLE 64 (65)
T ss_dssp TS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH----SS-EEE
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeec-CCCCCCEEe
Confidence 378999999999999999999999999999988999999999989888887 999998775
No 66
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.58 Score=38.54 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=60.6
Q ss_pred EEEEEecC-CCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 207 ALKLRLSN-TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 207 ~VkVRlS~-~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
.|.+|+++ +|..+.+.|..+.|...|-.......|-..+.-|++|.|+-..-.+|-.+. +..+|..|.++..
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dl-dmEdnd~iEav~e 96 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDL-DMEDNDEIEAVTE 96 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhc-CCccchHHHHHHH
Confidence 45555553 378999999999999999999999999999999999999999988999997 9998887765443
No 67
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.66 E-value=0.22 Score=38.75 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=45.7
Q ss_pred EccCchHHHHHHHHHHHhC-CCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 223 VFTQETVAMIKKRLQSLEG-IETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 223 V~~tdTV~~LK~kI~e~eG-Ip~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|.++++|.+|++-|..... ..-..-.|.+.|+.|.|...|.+..|+++|.++++.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv 56 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV 56 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence 5688999999999987744 222455899999999999999988789999999975
No 68
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=92.28 E-value=0.65 Score=41.51 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=46.6
Q ss_pred EEEEEEecCCC----ceEEEEEccCchHHHHHHHHHHHhCCCCCce-EEEE-cCeec--CCCCCcccc
Q psy7993 206 IALKLRLSNTC----QDVRMKVFTQETVAMIKKRLQSLEGIETSKQ-RWYY-GGKLL--SDKMKISDI 265 (300)
Q Consensus 206 I~VkVRlS~~G----kdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQ-RLiy-~GKiL--kD~~tL~dy 265 (300)
|+|+|++.. | .++.+.+.++.||.+|+.+|.+..+++...| .|.+ .|+.| .+...+..+
T Consensus 1 i~Vlvss~~-g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l 67 (162)
T PF13019_consen 1 INVLVSSFD-GLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSL 67 (162)
T ss_pred CeEEEecCC-CCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhh
Confidence 579999988 7 6999999999999999999999999998775 4544 35555 455555554
No 69
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.07 E-value=2.4 Score=33.80 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=57.2
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE--EcCeecC---CCCCcccccCCCCCCEEEE
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY--YGGKLLS---DKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi--y~GKiLk---D~~tL~dyqgIq~G~vI~v 276 (300)
+..-+|.||+.+ |..++-....++|+..|-.=++. .|.+++...|+ |=-|.|. -+.||.+. |+.+..+|.|
T Consensus 3 ~~~t~i~vRlP~-G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~-GL~P~~~LfV 78 (82)
T cd01773 3 GPKARLMLRYPD-GKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEA-GLCPQETVFV 78 (82)
T ss_pred CCeeEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHc-CCCCCcEEEE
Confidence 345689999998 99999999999999999998888 46677766664 4455553 35799999 9999998865
No 70
>COG5417 Uncharacterized small protein [Function unknown]
Probab=90.73 E-value=1.6 Score=34.80 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=56.1
Q ss_pred EEEEEEecC-CCceEEEEEccCchHHHHHHHHHHHhCCCC-----CceEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy7993 206 IALKLRLSN-TCQDVRMKVFTQETVAMIKKRLQSLEGIET-----SKQRWYYGGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 206 I~VkVRlS~-~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~-----~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
|+|.|-+.. .|..+.+.+..-.+|+.|-.-+-+.+.|+. .+.|..-.+++|.++..|.+| +|.+|+.+.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~-~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDY-QIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEec-cccCCCEEEe
Confidence 344443332 288999999999999999988887766542 456999999999999999999 9999998864
No 71
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.28 E-value=2.9 Score=32.76 Aligned_cols=70 Identities=9% Similarity=0.155 Sum_probs=56.9
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE--EcCeecC---CCCCcccccCCCCCCEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY--YGGKLLS---DKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi--y~GKiLk---D~~tL~dyqgIq~G~vI~v 276 (300)
..++|.||+.+ |..+.-....++|++.|-.=|..+ |.+...-+|+ |=-|.|. -+.||.+. |+.+..+|.|
T Consensus 3 ~~~~i~iRlP~-G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~-gL~p~~~L~V 77 (80)
T cd01771 3 PISKLRVRTPS-GDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLEL-KLYPQETLIL 77 (80)
T ss_pred CeEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHc-CCCCCcEEEE
Confidence 35799999999 999999999999999999988764 7776666774 5566664 25799998 9999888865
No 72
>KOG1639|consensus
Probab=87.97 E-value=1 Score=43.27 Aligned_cols=55 Identities=25% Similarity=0.218 Sum_probs=42.7
Q ss_pred EEEccCchHHHHHHHHHHH-hCCCCCceEE----EEcCeecCCCCCcccccCCCCCCEEEE
Q psy7993 221 MKVFTQETVAMIKKRLQSL-EGIETSKQRW----YYGGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 221 VeV~~tdTV~~LK~kI~e~-eGIp~~qQRL----iy~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
...+...||.+++++|..+ ..+.+..||+ --.||.|.|+.+|++| +...|.+|.+
T Consensus 17 ~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~-~~~s~~~i~v 76 (297)
T KOG1639|consen 17 KDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEY-GDGSGATIYV 76 (297)
T ss_pred ecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHh-ccCCCCEEEE
Confidence 5667889999999777655 5676655543 4479999999999999 9999977753
No 73
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=86.73 E-value=4.8 Score=30.15 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=49.4
Q ss_pred EEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC-ceEEEE----c--CeecCCCCCcccccCCC--CCCEEEEEe
Q psy7993 210 LRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS-KQRWYY----G--GKLLSDKMKISDIQNLA--SGFVIQVII 278 (300)
Q Consensus 210 VRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~-qQRLiy----~--GKiLkD~~tL~dyqgIq--~G~vI~vmV 278 (300)
|++.+ |...+++|+++.|+++|=.+|.++.||.-. ---|.| . ...|..+++|.++ ... ...++++.|
T Consensus 1 V~llD-~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q-~~~~~~~~~l~frv 76 (80)
T PF09379_consen 1 VRLLD-GTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQ-LKKNNPPFTLYFRV 76 (80)
T ss_dssp EEESS-EEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGS-TBTSSSSEEEEEEE
T ss_pred CCCcC-CCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHH-cCCCCCCEEEEEEE
Confidence 57787 899999999999999999999999999742 236777 2 2346778888885 655 344555444
No 74
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=86.58 E-value=2.3 Score=33.95 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=40.1
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCee
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKL 255 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKi 255 (300)
..|||+.- + .|.|.|.++-+..+|..||.++.++|++...|-|.-..
T Consensus 3 ~vvKV~f~--~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 3 YVVKVHFK--Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred eEEEEEEE--E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 45666654 3 89999999999999999999999999999999997543
No 75
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=86.18 E-value=6.8 Score=29.59 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=42.9
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
++|++-.......+++..+.||.+|-+++ +++.....+..+|+++.. +. -+++|+.|-++
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~-~l~~gD~Veii 64 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DD-PVKDGDYVEVI 64 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----Cc-CcCCCCEEEEE
Confidence 34444321236778888889999988776 777767788899999854 33 67789988764
No 76
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=85.81 E-value=3.6 Score=31.51 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=44.8
Q ss_pred eEEEEEEecC-----CC-ceEEEEEccCchHHHHHHHHHHHh-CCCC--CceEEEEcCeecCCCCCcccccCCCCCCEEE
Q psy7993 205 EIALKLRLSN-----TC-QDVRMKVFTQETVAMIKKRLQSLE-GIET--SKQRWYYGGKLLSDKMKISDIQNLASGFVIQ 275 (300)
Q Consensus 205 ~I~VkVRlS~-----~G-kdv~VeV~~tdTV~~LK~kI~e~e-GIp~--~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~ 275 (300)
+|+|+||+-. .| ....+++..+.||++|++.|.++. ++.. ..-.+..+|+...+ ++ -+++|+.|-
T Consensus 1 ~m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~-~l~dgDeVa 74 (82)
T PLN02799 1 SVEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SA-ALKDGDELA 74 (82)
T ss_pred CeEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----Cc-CcCCCCEEE
Confidence 3677777643 24 567788888999999999997764 2211 11246778887642 33 578899987
Q ss_pred EE
Q psy7993 276 VI 277 (300)
Q Consensus 276 vm 277 (300)
++
T Consensus 75 i~ 76 (82)
T PLN02799 75 II 76 (82)
T ss_pred Ee
Confidence 53
No 77
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=85.16 E-value=4.8 Score=32.70 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=41.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCCCCCceEE-EEcC---e-ecCC-CCCcccccCCCCCCEEEEEecCC
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGIETSKQRW-YYGG---K-LLSD-KMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRL-iy~G---K-iLkD-~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
..++..+++.|||..+++.+.+...| ...-|| .+.. - .|.+ ..||+++ +|..|.+|.+=.+..
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da-~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDA-GLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTT-T--TTEEEEEEE--T
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHc-cCcCCCEEEEEeecc
Confidence 46677889999999999999999999 444565 3222 1 3644 5799999 999999887655443
No 78
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=84.95 E-value=4.3 Score=30.32 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=41.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCC----CCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGI----ETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGI----p~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
....+++..+.||.+|.++|.++.+- .....+++.+|+.... +. -+++|+.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~-~l~~gD~v~i~ 74 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DT-PLKDGDEVAII 74 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----Cc-ccCCCCEEEEe
Confidence 35778888889999999999987542 2345688889999873 34 67889998764
No 79
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=84.57 E-value=2.6 Score=34.24 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=42.1
Q ss_pred EEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 219 VRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 219 v~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
+...++=..++..||..|+.+.|++-+.--+......|..+.+|.+ |+++-..+||+.|-
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~d-QcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVD-QCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTT-SS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHH-hhccccCEEEEEEE
Confidence 4556677789999999999999999877777778878999999999 59999999988764
No 80
>PRK06437 hypothetical protein; Provisional
Probab=84.10 E-value=6.7 Score=29.59 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=42.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
++.-.+++....||.+|-+++ |+++...-++.+|+++. .++ -+++|+.|-++
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~-~L~dgD~Veiv 61 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDH-NVKKEDDVLIL 61 (67)
T ss_pred CcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----Cce-EcCCCCEEEEE
Confidence 677888888889999887664 88888888899999997 444 67889988764
No 81
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=84.05 E-value=12 Score=32.24 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=48.3
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCce-EEEEcC------eecCCCCCcccccCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQ-RWYYGG------KLLSDKMKISDIQNLA 269 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQ-RLiy~G------KiLkD~~tL~dyqgIq 269 (300)
..+.|+|.+.+ |....+.++++.||++|...|..+.||....- -|++.. ..|....+|.+. ..+
T Consensus 2 ~~~~~~V~l~d-g~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~-~~~ 72 (207)
T smart00295 2 KPRVLKVYLLD-GTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQ-DVK 72 (207)
T ss_pred CcEEEEEEecC-CCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHh-cCC
Confidence 45789999998 99999999999999999999999999954221 455432 346666777764 444
No 82
>smart00455 RBD Raf-like Ras-binding domain.
Probab=84.04 E-value=3 Score=31.94 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=39.8
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG 253 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G 253 (300)
++|-+.. |+...|.+.++.||.++=.++-++.|+.++.-.++..|
T Consensus 2 ~~v~LP~-~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPD-NQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCC-CCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4555676 99999999999999999999999999999888888865
No 83
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=81.33 E-value=6.8 Score=29.51 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=38.3
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG 253 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G 253 (300)
++||++. ++....+.+....|-.+|+.+|.++.+++....+|-|..
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 5677776 267888999999999999999999999887667887764
No 84
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=80.88 E-value=5.3 Score=30.14 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=36.6
Q ss_pred EEEEEEecCCCceEE-EEEccCchHHHHHHHHHHHhCCCCCceEEEEcC
Q psy7993 206 IALKLRLSNTCQDVR-MKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG 253 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~-VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G 253 (300)
++||++.. +.... +.+....|..+|+.+|.+..+++....+|.|..
T Consensus 2 ~~vK~~~~--~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYG--GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEET--TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEEEEC--CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 45556554 45555 899999999999999999999987777888864
No 85
>KOG2086|consensus
Probab=80.37 E-value=2.6 Score=42.32 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=53.0
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhC-CCCCceEE--EEcCeecC-CCCCcccccCCCCCCEEE
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEG-IETSKQRW--YYGGKLLS-DKMKISDIQNLASGFVIQ 275 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eG-Ip~~qQRL--iy~GKiLk-D~~tL~dyqgIq~G~vI~ 275 (300)
.-.|.|||.+ |+.++..++-.+||.+|+.-|...-. -+..-+-| -|==|.|. |..||+++ |+.+--+||
T Consensus 305 tTsIQIRLan-G~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~A-gL~Nsvlvq 377 (380)
T KOG2086|consen 305 TTSIQIRLAN-GTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEA-GLLNSVLVQ 377 (380)
T ss_pred cceEEEEecC-CceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhc-cchhhhhhh
Confidence 4578889998 99999999999999999999987643 33333444 44557785 58899999 988766655
No 86
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=80.11 E-value=4.8 Score=31.24 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=39.3
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG 253 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G 253 (300)
++|-+.+ |+...|.|.+++||+++=.++-++-|+.++.-.+++.|
T Consensus 2 ~~V~LPn-g~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPN-GQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcC-CCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 4566777 99999999999999999999999999999887776665
No 87
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=79.88 E-value=4.9 Score=32.38 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=37.9
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC---ceEEEEc
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS---KQRWYYG 252 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~---qQRLiy~ 252 (300)
.+|+|... |+.+.+.+.++.++.+|+..|.++.|+... .-.|-|.
T Consensus 2 ~FK~~~~~-GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 2 AFKFKDPK-GRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred cEEeeCCC-CCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 46777776 999999999999999999999999999873 4456664
No 88
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=77.83 E-value=0.71 Score=45.08 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred CceEEEEEEecCCCceE--EEEEc---cCchHHHHHHHHHH----------HhCCCCCceE-----EEEcCeecCCCCCc
Q psy7993 203 GQEIALKLRLSNTCQDV--RMKVF---TQETVAMIKKRLQS----------LEGIETSKQR-----WYYGGKLLSDKMKI 262 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv--~VeV~---~tdTV~~LK~kI~e----------~eGIp~~qQR-----Liy~GKiLkD~~tL 262 (300)
-..|+|.+|... +.-+ +|... .+.||.++|..+++ ++++|.++.+ |.|.-|.+.|.+||
T Consensus 76 ~~sItV~Lks~r-np~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl 154 (309)
T PF12754_consen 76 SKSITVHLKSLR-NPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTL 154 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEeecCC-CCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcH
Confidence 356888888775 4443 33333 36899999999999 8999998888 99999999999999
Q ss_pred ccc
Q psy7993 263 SDI 265 (300)
Q Consensus 263 ~dy 265 (300)
.+.
T Consensus 155 ~e~ 157 (309)
T PF12754_consen 155 AEV 157 (309)
T ss_dssp ---
T ss_pred HHH
Confidence 875
No 89
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=77.46 E-value=9.3 Score=29.21 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=39.4
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEE--cCeecCCCCCc
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYY--GGKLLSDKMKI 262 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy--~GKiLkD~~tL 262 (300)
.++|-+.. |+...|.|.++.||.++=.++-++-|+.++.-.++- ..|.|.-+...
T Consensus 2 ~~~v~LP~-~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~ 58 (71)
T PF02196_consen 2 TCRVHLPN-GQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDS 58 (71)
T ss_dssp EEEEEETT-TEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBG
T ss_pred eEEEECCC-CCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCce
Confidence 46777887 999999999999999999999999999987655443 34555544433
No 90
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=73.76 E-value=34 Score=26.27 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=39.6
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCC------C-----CCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGI------E-----TSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGI------p-----~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
....|++. ..||++|.+.|.++..- . ....+++.+|+....... . -+++|+.|.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~-~l~dgdev~i~ 82 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---T-ELKDGDVVAIF 82 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---C-CCCCCCEEEEe
Confidence 46778886 88999999999887531 0 123567788887765432 3 67889988754
No 91
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=72.81 E-value=6.8 Score=31.81 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=39.6
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYY 251 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy 251 (300)
+.|+|=+.+ |..+.|++..+++..++=+.+..+.|+|.+.++.|.
T Consensus 2 V~L~V~Lpd-g~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFa 46 (87)
T cd01777 2 VELRIALPD-KATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFA 46 (87)
T ss_pred eEEEEEccC-CCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhhee
Confidence 567887887 999999999999999999999999999988776443
No 92
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=72.70 E-value=14 Score=27.65 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=35.0
Q ss_pred EEEEEecCCCceEEEEEc-cCchHHHHHHHHHHHhCCCCCceEEEEcC
Q psy7993 207 ALKLRLSNTCQDVRMKVF-TQETVAMIKKRLQSLEGIETSKQRWYYGG 253 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~-~tdTV~~LK~kI~e~eGIp~~qQRLiy~G 253 (300)
+||++.. |....+.+. ...|..+|+.+|.+..+++...-+|-|..
T Consensus 2 ~vK~~~~--~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKYG--GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEec--CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 4666654 567788888 99999999999999999976455666654
No 93
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=70.90 E-value=12 Score=28.10 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=35.6
Q ss_pred EEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 219 VRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 219 v~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
..+++..+.|...||+++..... -|||.|=+.+++.. +++|+.|.++-
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d~~------L~e~D~v~~Ik 55 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPDAD------IVILNGFPTKEDIE------LKEGDEVFLIK 55 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCccc------cCCCCEEEEEe
Confidence 34666788899999999765433 58999999987765 45678887653
No 94
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=70.01 E-value=19 Score=37.84 Aligned_cols=78 Identities=14% Similarity=0.354 Sum_probs=50.3
Q ss_pred CCceEEEEEEecCC-CceEEEEEccCchHHHHHHHHHHHh--CCCCCc------eE--EEEcC--e-ecCCC--------
Q psy7993 202 GGQEIALKLRLSNT-CQDVRMKVFTQETVAMIKKRLQSLE--GIETSK------QR--WYYGG--K-LLSDK-------- 259 (300)
Q Consensus 202 ~~~~I~VkVRlS~~-Gkdv~VeV~~tdTV~~LK~kI~e~e--GIp~~q------QR--Liy~G--K-iLkD~-------- 259 (300)
+-..++|.|-.... ...+.|.|-..|||.++|+||-+.. +.|.++ .- |..++ + +|.|.
T Consensus 186 d~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 186 DYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred ceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCC
Confidence 44678888765442 3578999999999999999998773 555433 22 44332 3 66654
Q ss_pred -----CCcccccCCCCCCEEEEEecC
Q psy7993 260 -----MKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 260 -----~tL~dyqgIq~G~vI~vmV~k 280 (300)
.||..| +|.+|.+|-++-++
T Consensus 266 ~wkrLNTL~HY-~V~dga~vaLv~k~ 290 (539)
T PF08337_consen 266 GWKRLNTLAHY-KVPDGATVALVPKQ 290 (539)
T ss_dssp TEEE--BHHHH-T--TTEEEEEEES-
T ss_pred CceEeccHhhc-CCCCCceEEEeecc
Confidence 468888 99999999865544
No 95
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=69.81 E-value=21 Score=26.28 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=37.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+.+ + ..||.+|.+.+ +++.....+..+|+++.- ....+. -+++|+.|-++
T Consensus 7 g~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~-~L~dgD~Ieiv 59 (65)
T PRK06488 7 GETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQF-VLHEGDRIEIL 59 (65)
T ss_pred CeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCcc-ccCCCCEEEEE
Confidence 677776 3 35888887765 677666678999999862 223344 68889998764
No 96
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=69.35 E-value=29 Score=26.35 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=40.5
Q ss_pred Cc-eEEEEEccC-chHHHHHHHHHHHhC-CC--CCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQ-DVRMKVFTQ-ETVAMIKKRLQSLEG-IE--TSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gk-dv~VeV~~t-dTV~~LK~kI~e~eG-Ip--~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+ ...+++... .||++|++.|.++.+ +- ....+++.+|+...+ +. -+++|+.|-++
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~-~l~dgDevai~ 74 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DA-LLNEGDEVAFI 74 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----Cc-CcCCCCEEEEe
Confidence 44 457888766 899999999988864 21 133578889998875 34 68889998754
No 97
>KOG0012|consensus
Probab=68.92 E-value=12 Score=37.65 Aligned_cols=59 Identities=15% Similarity=0.148 Sum_probs=53.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCC--CCCcccccCCCCCCEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSD--KMKISDIQNLASGFVIQ 275 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD--~~tL~dyqgIq~G~vI~ 275 (300)
.+++.+.|...-....++..+....|+..+..-|+|.++.|.+ ..+|.++ |++.|+++-
T Consensus 12 ~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~-g~~~~dsl~ 72 (380)
T KOG0012|consen 12 EKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQI-GLKDGDSLA 72 (380)
T ss_pred eeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhc-ccccceeEe
Confidence 6899999999999999999999999999999999999999975 5788888 999999875
No 98
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=68.82 E-value=16 Score=28.76 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=39.1
Q ss_pred EEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCe
Q psy7993 209 KLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGK 254 (300)
Q Consensus 209 kVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GK 254 (300)
+|-|.+ |..-.|.+.++.||.++=.++-++-|+..+---+|..|+
T Consensus 3 rV~LPd-g~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 3 RVILPD-GSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EEECCC-CCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 344666 899999999999999999999999999998888877774
No 99
>KOG0007|consensus
Probab=68.44 E-value=2 Score=41.96 Aligned_cols=48 Identities=25% Similarity=0.342 Sum_probs=42.6
Q ss_pred CCceEEEEEc-cCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCc
Q psy7993 215 TCQDVRMKVF-TQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKI 262 (300)
Q Consensus 215 ~Gkdv~VeV~-~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL 262 (300)
+|..+.+.+. -+..|..||.|+....+|++..|.+.|.|..|+|+.++
T Consensus 291 dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 291 DGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 3777777777 78899999999999999999999999999999998554
No 100
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=68.07 E-value=17 Score=26.66 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=37.2
Q ss_pred EEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 221 MKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 221 VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
+++....||.+|.+++ +++.....+.+.|+++....--. + -+++|+.|-++
T Consensus 9 ~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~~~~-~-~L~~gD~V~ii 59 (65)
T cd00565 9 REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSEWAS-T-PLQDGDRIEIV 59 (65)
T ss_pred EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHHcCc-e-ecCCCCEEEEE
Confidence 4456778999888775 57777888999999986543222 2 58889988764
No 101
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=66.57 E-value=17 Score=28.70 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=34.8
Q ss_pred EEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCC-CceEEEEcCe
Q psy7993 209 KLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIET-SKQRWYYGGK 254 (300)
Q Consensus 209 kVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~-~qQRLiy~GK 254 (300)
+||.+-+|..+.+.+.++.+..+|+++|.++.++.. ..-.|-|.--
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd 48 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD 48 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence 344444367788999999999999999999999875 4456766543
No 102
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=60.12 E-value=53 Score=25.97 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=40.6
Q ss_pred CCceEEEEEccCchHHHHHHHHHHHhCCCCCce-EEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 215 TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQ-RWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 215 ~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQ-RLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
.++.+.+.+....||+++-+. .|||-... .++-+|+...= +| -+++|+.|.+.
T Consensus 21 r~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~-~~~~Gd~v~V~ 74 (81)
T PF14451_consen 21 RGGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DY-RLKDGDRVAVY 74 (81)
T ss_pred cCCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cc-cCCCCCEEEEE
Confidence 367888999999999988655 69998777 45668887642 35 78889998864
No 103
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=59.20 E-value=16 Score=30.38 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=22.5
Q ss_pred EEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 248 RWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 248 RLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
.|.|.||.|....+|.+| |..+..--++|+=
T Consensus 3 ~LW~aGK~l~~~k~l~dy--~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY--IGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCcHHHh--cCCCcceeEEEEe
Confidence 477999999999999999 5555444444443
No 104
>PF09498 DUF2388: Protein of unknown function (DUF2388); InterPro: IPR012661 This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae pv. tomato str. DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=56.78 E-value=7.4 Score=30.65 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHh
Q psy7993 73 IWDALHAAASAAEGNDFQLAQAILD 97 (300)
Q Consensus 73 iW~aL~aA~~~~~~~d~~~Aq~il~ 97 (300)
-|+.||...-.+..+|+++||+||-
T Consensus 47 Al~~lR~~~p~~~asD~~LA~AILa 71 (72)
T PF09498_consen 47 ALRQLRQDNPELQASDLQLAQAILA 71 (72)
T ss_pred HHHHHHhhCCCCCCCHHHHHHHHHc
Confidence 4666777666677899999999984
No 105
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=56.71 E-value=69 Score=23.14 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=35.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+ ++..+.||.+|.+.+ +++ ....+.+.|+++....-.. . -+++|+.|-++
T Consensus 7 g~~~--~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~~~~~-~-~L~~gD~vei~ 59 (65)
T PRK06944 7 QQTL--SLPDGATVADALAAY----GAR-PPFAVAVNGDFVARTQHAA-R-ALAAGDRLDLV 59 (65)
T ss_pred CEEE--ECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCchhccc-c-cCCCCCEEEEE
Confidence 5554 445678999888765 443 3457788999885433222 2 58889999864
No 106
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=56.64 E-value=5.5 Score=29.13 Aligned_cols=34 Identities=32% Similarity=0.584 Sum_probs=22.5
Q ss_pred HhhhhhcccCCCCCCCHHHHHHHHHHHHhcccCCHHHHHHHHhhc
Q psy7993 55 SKRDEFWDTAPAFEGRKEIWDALHAAASAAEGNDFQLAQAILDGA 99 (300)
Q Consensus 55 ~~R~eFwdT~p~~~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA 99 (300)
.+|..||++- +.| .+.+++..|+.+.|..+|+.+
T Consensus 25 ~~RR~FWe~~--~~g---------~~~~~~~~g~~~~A~~~l~~~ 58 (60)
T PF10414_consen 25 AERRRFWERF--FDG---------PFAELVLAGDEEEAEALLEQA 58 (60)
T ss_dssp HHHHHHHHHH--T-H---------HHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHH--HcC---------HHHHHHHCCCHHHHHHHHHHh
Confidence 3577788887 653 234556678999999988753
No 107
>KOG2982|consensus
Probab=56.05 E-value=26 Score=35.16 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=43.6
Q ss_pred EEEccCchHHHHHHHHHHHhCCCCCceEEEEcC---eec-----CCCCCcccccCCCCCCEEEE
Q psy7993 221 MKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG---KLL-----SDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 221 VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G---KiL-----kD~~tL~dyqgIq~G~vI~v 276 (300)
.-|.-+-||.++|+++..+.|+.+.++||||.- |.- .-++.|..| +|++|+-+-+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~f-kIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYF-KIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEE-eccCCCEeee
Confidence 556777899999999999999999999999964 322 225667777 9999987653
No 108
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=54.30 E-value=42 Score=24.59 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=36.0
Q ss_pred EEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 221 MKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 221 VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
+++..+.||.+|.+++ ++++....+..+|+++....- .++ -+++|+.|-++
T Consensus 8 ~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~~-~~~-~L~~gD~veii 58 (64)
T TIGR01683 8 VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRSEW-DDT-ILKEGDRIEIV 58 (64)
T ss_pred EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHHHc-Cce-ecCCCCEEEEE
Confidence 3445677899888765 677777788999999853322 223 58899988764
No 109
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=53.48 E-value=33 Score=25.23 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=43.3
Q ss_pred eEEEEEccCchHHHHHHHHHHHhC-C-CCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 218 DVRMKVFTQETVAMIKKRLQSLEG-I-ETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 218 dv~VeV~~tdTV~~LK~kI~e~eG-I-p~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
...+.+....||++|.++|..+.. + .....+++.+|+...+ . -.+. -+++|+.|.++
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~-~-~~~~-~l~~gD~V~i~ 71 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD-D-GLDT-PLKDGDEVAIL 71 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG-G-TTTS-BEETTEEEEEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC-c-cCCc-CcCCCCEEEEE
Confidence 677888999999999999987753 1 1245789999999988 3 3333 57789998764
No 110
>KOG3439|consensus
Probab=52.00 E-value=68 Score=27.44 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=42.9
Q ss_pred CceEEEEEEecCC-C--ceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeec
Q psy7993 203 GQEIALKLRLSNT-C--QDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLL 256 (300)
Q Consensus 203 ~~~I~VkVRlS~~-G--kdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiL 256 (300)
...++|++|-..+ + +.-+..|++++||+.+-..|....+++...|-.+|-..-+
T Consensus 28 ~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 28 IRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 3567777775542 1 4566889999999999999999999999999888877665
No 111
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=49.73 E-value=77 Score=23.83 Aligned_cols=38 Identities=13% Similarity=0.033 Sum_probs=30.7
Q ss_pred EEEEEEecCCCc----eEEEEEccCchHHHHHHHHHHHhCCCC
Q psy7993 206 IALKLRLSNTCQ----DVRMKVFTQETVAMIKKRLQSLEGIET 244 (300)
Q Consensus 206 I~VkVRlS~~Gk----dv~VeV~~tdTV~~LK~kI~e~eGIp~ 244 (300)
..|+|-... +. ..+|.|.++.|+.+|-+.+.++.|++.
T Consensus 3 ~~lrVy~~~-~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~ 44 (93)
T PF00788_consen 3 GVLRVYDGD-GSPGSTYKTIKVSSSTTAREVIEMALEKFGLAE 44 (93)
T ss_dssp EEEEEEETT-SSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSS
T ss_pred eEEEEEcCC-CCCCccEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 345665555 44 788999999999999999999999943
No 112
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=49.67 E-value=76 Score=32.43 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=50.6
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCC----CCCceEEE---EcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGI----ETSKQRWY---YGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGI----p~~qQRLi---y~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
..|.|... .+.+.+-+.....|.+|--.|....|- +.....|. -+|..|+.+.||.+. +|.+|+++++-
T Consensus 3 ~RVtV~~~--~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~-gV~DG~~L~L~ 78 (452)
T TIGR02958 3 CRVTVLAG--RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEA-GVRDGELLVLV 78 (452)
T ss_pred EEEEEeeC--CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHc-CCCCCCeEEEe
Confidence 34555433 466888888999999998888877653 21222332 289999999999996 99999999864
No 113
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=48.92 E-value=81 Score=25.52 Aligned_cols=54 Identities=7% Similarity=0.183 Sum_probs=37.4
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCccc
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISD 264 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~d 264 (300)
|+||..-.|..+.+.|.++-+-.+|..+|.++.|+. ...+|-|.-- .|.-||.+
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 444444436678889999999999999999999995 3335555443 44445443
No 114
>KOG2561|consensus
Probab=47.41 E-value=15 Score=38.12 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=50.2
Q ss_pred EEEEEecCCC-ceEEE--EEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 207 ALKLRLSNTC-QDVRM--KVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 207 ~VkVRlS~~G-kdv~V--eV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
++.||+...+ ++-.+ +-+-.-|=.++..+|.++.||+-...+.|-+||+|.=.+||.+ ||++.+.-.-|+|
T Consensus 37 t~~Vrlv~~~k~~~m~l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlae-Qglk~nq~~mv~~ 110 (568)
T KOG2561|consen 37 TESVRLVFAGKGDRMNLKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAE-QGLKINQELMVAV 110 (568)
T ss_pred ceeeEeccccccchhhhhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhh-hhhhhhhHHHHHh
Confidence 4555554432 22222 2233344568999999999999999999999999999999999 5888765444443
No 115
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=46.15 E-value=65 Score=23.43 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=38.2
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+ ++..+.||.+|-.. .|++....-+.+.|+++.-..-... -+++|+.|-++
T Consensus 7 G~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~~~~~--~l~~gD~vei~ 60 (66)
T PRK05659 7 GEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQHAST--ALREGDVVEIV 60 (66)
T ss_pred CeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHHcCcc--cCCCCCEEEEE
Confidence 5644 55677888877654 5888877788899988874443332 58889998765
No 116
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=45.90 E-value=40 Score=26.92 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=32.8
Q ss_pred eEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC
Q psy7993 218 DVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG 253 (300)
Q Consensus 218 dv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G 253 (300)
+|.|.+.++.+..+|..+|.++.+.++++-+|-|.-
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 677888999999999999999999999999998863
No 117
>KOG4250|consensus
Probab=45.24 E-value=52 Score=35.88 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=39.1
Q ss_pred cCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeec
Q psy7993 213 SNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLL 256 (300)
Q Consensus 213 S~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiL 256 (300)
+.++..+++-+.+..|+..++.+|+.+.|||.+.|-|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 33378899999999999999999999999999999999987754
No 118
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=44.42 E-value=39 Score=31.53 Aligned_cols=47 Identities=4% Similarity=0.228 Sum_probs=34.7
Q ss_pred ceEEEEEEecCC--CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE
Q psy7993 204 QEIALKLRLSNT--CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY 250 (300)
Q Consensus 204 ~~I~VkVRlS~~--Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi 250 (300)
..+.|+++-... +..|++.++...|-.+|.++|.+..|++|...||+
T Consensus 175 nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 175 NRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 356777766432 45899999999999999999999999999999885
No 119
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=42.90 E-value=69 Score=25.94 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=45.3
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC--ce-----EEEEcCeecCCCCCcccc
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS--KQ-----RWYYGGKLLSDKMKISDI 265 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~--qQ-----RLiy~GKiLkD~~tL~dy 265 (300)
-|||-+.+ |....|.|+.+.|++++-+.|.++..+..+ +. --.+..|.|+|.+.|.+.
T Consensus 4 vvkv~~~D-g~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 4 VVKVYSED-GASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred EEEEEecC-CCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 46666666 999999999999999999999999876542 22 124567888999888876
No 120
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=42.63 E-value=46 Score=30.31 Aligned_cols=48 Identities=29% Similarity=0.296 Sum_probs=29.9
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCCCCC---ceEE--EEcCee---cCCCCCccc
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGIETS---KQRW--YYGGKL---LSDKMKISD 264 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGIp~~---qQRL--iy~GKi---LkD~~tL~d 264 (300)
+.+.+-|.++.||++|..+++.+.+++.+ ..|| +++||+ |..+.+|.+
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~ 89 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISS 89 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGG
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhh
Confidence 35888999999999999999999998764 4454 677776 566777763
No 121
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=42.62 E-value=1.2e+02 Score=31.47 Aligned_cols=72 Identities=14% Similarity=0.268 Sum_probs=50.8
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHh--CCCCCceEEEE----cCee--cCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLE--GIETSKQRWYY----GGKL--LSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~e--GIp~~qQRLiy----~GKi--LkD~~tL~dyqgIq~G~vI~vm 277 (300)
|-+++|... ..-.+++.++++.+.|-.||-.-. |..+++..+.- .|-+ +-.++|+.+. |++.|.++.+-
T Consensus 1 Mi~rfRsk~--G~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dl-GL~hGqmLyl~ 77 (571)
T COG5100 1 MIFRFRSKE--GQRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDL-GLRHGQMLYLE 77 (571)
T ss_pred CeEEEecCC--CceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhh-ccccCcEEEEE
Confidence 457788653 677899999999999999987663 44455544432 1221 2345678888 99999999987
Q ss_pred ecC
Q psy7993 278 INN 280 (300)
Q Consensus 278 V~k 280 (300)
.+-
T Consensus 78 ysd 80 (571)
T COG5100 78 YSD 80 (571)
T ss_pred ecc
Confidence 744
No 122
>TIGR02448 conserverd hypothetical protein. This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1, and also in Pseudomonas putida KT2440, four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.
Probab=41.93 E-value=17 Score=30.39 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHh
Q psy7993 74 WDALHAAASAAEGNDFQLAQAILD 97 (300)
Q Consensus 74 W~aL~aA~~~~~~~d~~~Aq~il~ 97 (300)
++.||.....+..+|+++||+||-
T Consensus 77 l~~~R~~~p~~~asD~eLA~AILa 100 (101)
T TIGR02448 77 LRQLRSDNPALQASDMELAQAILA 100 (101)
T ss_pred HHHHHhhCCccCCCHHHHHHHHHc
Confidence 555565555566799999999983
No 123
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=41.82 E-value=25 Score=32.03 Aligned_cols=50 Identities=24% Similarity=0.208 Sum_probs=28.7
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCC---CceEE--EEcCe-----ecCCCC--Ccccc
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIET---SKQRW--YYGGK-----LLSDKM--KISDI 265 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~---~qQRL--iy~GK-----iLkD~~--tL~dy 265 (300)
|--|.+.|.+++|..++|++|+++.|++- ++.++ +..++ -|.|.. .|.+.
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~~~ 193 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILFDE 193 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----GG
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhhhh
Confidence 67789999999999999999999999985 34454 33554 456654 55543
No 124
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=40.60 E-value=1.5e+02 Score=23.60 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=38.5
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|+.+.+ ....||.+|-+. .++++...-+..+|.++.-. .-.++ -+++|+.|.++-
T Consensus 25 G~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr~-~w~~t-~L~egD~IEIv~ 79 (84)
T PRK06083 25 DQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVPRS-EWQST-VLSSGDAISLFQ 79 (84)
T ss_pred CeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeCHH-HcCcc-cCCCCCEEEEEE
Confidence 676655 556788777554 47887777788999999532 23344 799999998753
No 125
>KOG4842|consensus
Probab=38.97 E-value=5.8 Score=38.21 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=46.5
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccc
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDI 265 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dy 265 (300)
+.|++..+-.|..+.++++.+++|.+.+.+|+...+|.+..-++++.+ .|++...|..+
T Consensus 2 ~~i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~-llk~iahl~~p 60 (278)
T KOG4842|consen 2 IAIKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALN-LLKEIAHLVSP 60 (278)
T ss_pred ccEEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhh-hhhhhhhhhhh
Confidence 455665555589999999999999999999999999999888888877 45555444443
No 126
>COG4749 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.94 E-value=53 Score=30.00 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=40.7
Q ss_pred hcccCCCCCCCHHHHHHHHHHHHhcccCCHHHHHHHHhhcCeeeecCC
Q psy7993 60 FWDTAPAFEGRKEIWDALHAAASAAEGNDFQLAQAILDGANISVPNGF 107 (300)
Q Consensus 60 FwdT~p~~~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA~itlp~g~ 107 (300)
|+.-- |.|...+=..||+|+++-.++|++.|...+-+.|-+|..|+
T Consensus 108 Yv~g~--~~~~as~~el~kaAv~aEas~dld~aL~~vAq~Ga~VikG~ 153 (196)
T COG4749 108 YVEGK--ISDKASFEELLKAAVKAEASGDLDGALNAVAQMGAKVIKGE 153 (196)
T ss_pred HHhcc--ccccccHHHHHHHHHHHHhcccHHHHHHHHHhcCceeeccC
Confidence 44444 78889999999999999889999999999999999999886
No 127
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=37.81 E-value=84 Score=22.96 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=36.8
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+|.+.+ |+... +..+.|+.++.+.|+...+=.. ---...|+...=+. -|++|.+|.++
T Consensus 1 I~v~lpd-G~~~~--~~~g~T~~d~A~~I~~~l~~~~--~~A~Vng~~vdl~~------~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPD-GSIKE--LPEGSTVLDVAYSIHSSLAKRA--VAAKVNGQLVDLDH------PLEDGDVVEII 59 (60)
T ss_dssp EEEEETT-SCEEE--EETTBBHHHHHHHHSHHHHHCE--EEEEETTEEEETTS------BB-SSEEEEEE
T ss_pred CEEECCC-CCeee--CCCCCCHHHHHHHHCHHHHhhe--eEEEEcCEECCCCC------CcCCCCEEEEE
Confidence 4566666 76655 6788899999999987753211 12234665554332 45668888764
No 128
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=37.60 E-value=94 Score=24.86 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=28.6
Q ss_pred EEEecCCCceEEEEEcc--CchHHHHHHHHHHHhCCC
Q psy7993 209 KLRLSNTCQDVRMKVFT--QETVAMIKKRLQSLEGIE 243 (300)
Q Consensus 209 kVRlS~~Gkdv~VeV~~--tdTV~~LK~kI~e~eGIp 243 (300)
+||.+-+|..+.+.+.+ .-|-.+|++.|....+++
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 34444447888899988 669999999999999998
No 129
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=34.04 E-value=2.6e+02 Score=22.75 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=47.7
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHH-hCC--CC--C-ceEEEEcC--eecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSL-EGI--ET--S-KQRWYYGG--KLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~-eGI--p~--~-qQRLiy~G--KiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
+.|..+...+=-..-|-|+..+|+.++..|+..- .|. ++ . -.|+-+.| ..|..+.++.+. ||++=..|-++
T Consensus 4 fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaea-gl~P~e~vev~ 82 (85)
T PF06234_consen 4 FPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEA-GLQPMEWVEVR 82 (85)
T ss_dssp EEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGH-T--TTEEEEEE
T ss_pred cceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhc-CCCcceEEEEE
Confidence 4455555431123446889999999999999865 343 22 2 45888999 999999999999 99998888776
Q ss_pred e
Q psy7993 278 I 278 (300)
Q Consensus 278 V 278 (300)
.
T Consensus 83 ~ 83 (85)
T PF06234_consen 83 F 83 (85)
T ss_dssp E
T ss_pred E
Confidence 5
No 130
>PRK01777 hypothetical protein; Validated
Probab=33.05 E-value=2.4e+02 Score=22.94 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=41.5
Q ss_pred eEEEEEEecC--CCceEEEEEccCchHHHHHHHHHHHhCCCCC-------ceEEEEcCeecCCCCCcccccCCCCCCEEE
Q psy7993 205 EIALKLRLSN--TCQDVRMKVFTQETVAMIKKRLQSLEGIETS-------KQRWYYGGKLLSDKMKISDIQNLASGFVIQ 275 (300)
Q Consensus 205 ~I~VkVRlS~--~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~-------qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~ 275 (300)
+|+|.|=... ...-+.+++..+.||+++-+.+ ||+.. .-.+.-.||...-+ . -+++|+.|-
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d-----~-~L~dGDRVe 72 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLT-----D-VLRDGDRVE 72 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCC-----C-cCCCCCEEE
Confidence 4566665543 2345778999999999987765 66543 23555677766432 2 678899998
Q ss_pred EE
Q psy7993 276 VI 277 (300)
Q Consensus 276 vm 277 (300)
++
T Consensus 73 Iy 74 (95)
T PRK01777 73 IY 74 (95)
T ss_pred Ee
Confidence 53
No 131
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=32.87 E-value=53 Score=30.64 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=51.0
Q ss_pred CCceEEEEEEecCC-CceEE----EEEccCchHHHHHHHHHHHhCCCCCceEEEEc----Ce--ecCCCCCcccccCCCC
Q psy7993 202 GGQEIALKLRLSNT-CQDVR----MKVFTQETVAMIKKRLQSLEGIETSKQRWYYG----GK--LLSDKMKISDIQNLAS 270 (300)
Q Consensus 202 ~~~~I~VkVRlS~~-Gkdv~----VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~----GK--iLkD~~tL~dyqgIq~ 270 (300)
..+.+.|++|.-+- .+.+. +-|..+++|.+|-..|.+..|+|++..-++|- |+ .++-..|+..+ .|++
T Consensus 65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~-el~~ 143 (249)
T PF12436_consen 65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKA-ELQD 143 (249)
T ss_dssp TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHT-T--T
T ss_pred CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhc-ccCC
Confidence 34578899987542 23333 67899999999999999999999987766664 33 36889999998 9999
Q ss_pred CCEEEEEe
Q psy7993 271 GFVIQVII 278 (300)
Q Consensus 271 G~vI~vmV 278 (300)
|++|.+=.
T Consensus 144 GdIi~fQ~ 151 (249)
T PF12436_consen 144 GDIICFQR 151 (249)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEe
Confidence 99986543
No 132
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=32.74 E-value=2.2e+02 Score=21.66 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=28.5
Q ss_pred CchHHHHHHHHHHHhC-----CCCCceEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy7993 226 QETVAMIKKRLQSLEG-----IETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 226 tdTV~~LK~kI~e~eG-----Ip~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
..||++|++.|.++.. ......++.-+|+...+ +. -+++|+.|-+
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~-~l~dgDeVai 74 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DH-PLTDGDEVAF 74 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CC-CCCCCCEEEE
Confidence 5799999999988752 11223355556654332 23 5788998864
No 133
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=32.33 E-value=1.3e+02 Score=26.98 Aligned_cols=60 Identities=17% Similarity=0.362 Sum_probs=43.6
Q ss_pred CCceEEEEEEecCCCceEEEEEcc-CchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFT-QETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASG 271 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~-tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G 271 (300)
.+..|.|+|+. ..+-|++.. .+.+..+++...+..-.+-+ ++-|+-++...|+.|| ++.|
T Consensus 64 ~g~~veL~V~v----Gri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY--~KyG 124 (153)
T PF02505_consen 64 GGEEVELTVKV----GRIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY--AKYG 124 (153)
T ss_pred CCEEEEEEEEE----eEEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh--hhcC
Confidence 44566777764 467788887 77888888877776644322 3469999999999999 7766
No 134
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=31.68 E-value=2.1e+02 Score=21.62 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=26.2
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCC
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIET 244 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~ 244 (300)
+.-.+|.|++++|..+|-+.+.++.++..
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~ 40 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDD 40 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcC
Confidence 55688999999999999999999999983
No 135
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=31.33 E-value=58 Score=26.55 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHhcccCCHHHHHHHHhhc
Q psy7993 68 EGRKEIWDALHAAASAAEGNDFQLAQAILDGA 99 (300)
Q Consensus 68 ~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA 99 (300)
+|+.++|+++..-... +|.|||.-
T Consensus 2 ~~d~~~~~tf~~sF~q--------VQ~iLDqN 25 (87)
T PF07011_consen 2 QGDGKVWQTFQKSFVQ--------VQSILDQN 25 (87)
T ss_pred CccHHHHHHHHHHHHH--------HHHHHHHh
Confidence 5789999999987553 88888753
No 136
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=31.18 E-value=2.2e+02 Score=20.98 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=36.1
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+.+ ....||.+|-+. .+++.....+...|+++.-+. -.+. -+++|+.|-++
T Consensus 7 g~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r~~-w~~~-~L~~gD~Ieii 60 (66)
T PRK08053 7 DQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPREQ-WAQH-IVQDGDQILLF 60 (66)
T ss_pred CeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeChHH-cCcc-ccCCCCEEEEE
Confidence 555555 566788888765 366656678899999986221 1222 57889988764
No 137
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=30.29 E-value=1.9e+02 Score=24.92 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=38.9
Q ss_pred eEEE-EEcc-CchHHHHHHHHHHH----hCCCC------CceEEEEc-----------------Ceec---CCCCCcccc
Q psy7993 218 DVRM-KVFT-QETVAMIKKRLQSL----EGIET------SKQRWYYG-----------------GKLL---SDKMKISDI 265 (300)
Q Consensus 218 dv~V-eV~~-tdTV~~LK~kI~e~----eGIp~------~qQRLiy~-----------------GKiL---kD~~tL~dy 265 (300)
-+.+ .|+- +.||++|++.+.+. .|++| +..+|++. .-+| ++..+|.++
T Consensus 16 ~~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~ 95 (122)
T PF10209_consen 16 NLVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKEL 95 (122)
T ss_pred eeeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHc
Confidence 3444 3664 88999988877765 45654 23344432 1366 788889998
Q ss_pred cCCCCCCEEEEE
Q psy7993 266 QNLASGFVIQVI 277 (300)
Q Consensus 266 qgIq~G~vI~vm 277 (300)
||..+.-|-++
T Consensus 96 -gv~nETEiSfF 106 (122)
T PF10209_consen 96 -GVENETEISFF 106 (122)
T ss_pred -CCCccceeeee
Confidence 99888877654
No 138
>PF05424 Duffy_binding: Duffy binding domain; InterPro: IPR008602 This family contains several Plasmodium Duffy binding proteins. Plasmodium vivax and Plasmodium knowlesi merozoites invade Homo sapiens erythrocytes that express Duffy blood group surface determinants. The Duffy receptor family is localised in micronemes, an organelle found in all organisms of the phylum Apicomplexa [].; GO: 0004872 receptor activity, 0009405 pathogenesis, 0016021 integral to membrane; PDB: 2WAU_B 3CML_A 3CPZ_A 3BQL_A 3BQK_A 3BQI_A 3RRC_B 2XU0_A 2YK0_A 2C6J_A ....
Probab=30.20 E-value=33 Score=30.30 Aligned_cols=28 Identities=32% Similarity=0.824 Sum_probs=23.6
Q ss_pred HHHHHhhhhhcccCCCCCCCHHHHHHHHHHHHh
Q psy7993 51 GQLRSKRDEFWDTAPAFEGRKEIWDALHAAASA 83 (300)
Q Consensus 51 ~~l~~~R~eFwdT~p~~~G~~EiW~aL~aA~~~ 83 (300)
......|++||+.- ++.||.|+--|+.-
T Consensus 116 ~~~~~~Re~WW~~n-----r~~IWkaM~C~l~~ 143 (182)
T PF05424_consen 116 GNYKKLREDWWEEN-----RKHIWKAMICALTY 143 (182)
T ss_dssp BHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHh-----HHHhhcceecCCCC
Confidence 34667899999987 89999999988764
No 139
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=30.10 E-value=1.7e+02 Score=23.94 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=32.9
Q ss_pred EEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEE
Q psy7993 210 LRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYY 251 (300)
Q Consensus 210 VRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy 251 (300)
+|... |.+-.+.|..+.|..+|+.|+.+..+++.. ..|-|
T Consensus 17 l~Y~G-G~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVG-GETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcC-CceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45555 888889999999999999999999999875 54444
No 140
>PF15051 FAM198: FAM198 protein
Probab=29.74 E-value=60 Score=32.15 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=26.7
Q ss_pred hhhhcccCCCCCCCHHHHHHHHHHHHhcccCCHHHHH---HHHhhcCeeee
Q psy7993 57 RDEFWDTAPAFEGRKEIWDALHAAASAAEGNDFQLAQ---AILDGANISVP 104 (300)
Q Consensus 57 R~eFwdT~p~~~G~~EiW~aL~aA~~~~~~~d~~~Aq---~il~aA~itlp 104 (300)
=.+||+++ ||++-|...|...=. -|| .-|.+.||+|-
T Consensus 284 D~~~WeSq---GG~~Gi~~li~~ie~--------R~kiLl~yi~~h~~~~~ 323 (326)
T PF15051_consen 284 DQVFWESQ---GGRQGIEKLIDVIER--------RAKILLTYINAHGLKVL 323 (326)
T ss_pred hhhHhhhc---CchhhHHHHHHHHHH--------HHHHHHHHHHHcCCeec
Confidence 36899999 999999888765421 144 34678888874
No 141
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=29.58 E-value=2.7e+02 Score=22.76 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=43.6
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHh----CC--CCC-ceE--------EEEcCeecCCCCCcccccCCC
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLE----GI--ETS-KQR--------WYYGGKLLSDKMKISDIQNLA 269 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~e----GI--p~~-qQR--------Liy~GKiLkD~~tL~dyqgIq 269 (300)
.+.|.+........+++.+..++|+.+|.+.+-.+. +. +++ .=. ++++-..|.+-+-+.+ .++
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~--cl~ 94 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRN--CLK 94 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHH--HHh
Confidence 456666665434679999999999999988777661 11 111 112 2333333333333333 377
Q ss_pred CCCEEEEEec
Q psy7993 270 SGFVIQVIIN 279 (300)
Q Consensus 270 ~G~vI~vmV~ 279 (300)
.|..+|+++-
T Consensus 95 ~~~~~~L~L~ 104 (108)
T smart00144 95 NGREPHLVLM 104 (108)
T ss_pred cCCCceEEEE
Confidence 7888887764
No 142
>TIGR03836 termin_org_HMW1 cytadherence high molecular weight protein 1 N-terminal region. This model describes the N-terminal region of the Mycoplasma cytadherence protein HMW1, up to but not including the first EAGR box domain. The apparent orthologs in different Mycoplasma species differ profoundly in archictecture C-terminally to the region described here.
Probab=29.00 E-value=23 Score=28.19 Aligned_cols=24 Identities=42% Similarity=0.728 Sum_probs=19.0
Q ss_pred HhhcCeeee-cCCchhheccCCCccc
Q psy7993 96 LDGANISVP-NGFLTESYDELGNKYM 120 (300)
Q Consensus 96 l~aA~itlp-~g~l~~~yD~~G~~Y~ 120 (300)
-|++ .+|| .|++.++||..||-|=
T Consensus 22 YDGk-~tv~eDg~ikvAyDaDgNgYY 46 (82)
T TIGR03836 22 YDGK-GTVPEDGSIKVAYDADGNGYY 46 (82)
T ss_pred ccCc-cccCCCCcEEEEEecCCCEEE
Confidence 3445 5777 8999999999999663
No 143
>KOG1364|consensus
Probab=28.98 E-value=76 Score=31.89 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCceEE-EEEEecCCCceEEEEEccCchHHHHHHHHHHH-hCCCCCceEEEEcC---eecC--CCCCcccccCCCCCCE
Q psy7993 202 GGQEIA-LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSL-EGIETSKQRWYYGG---KLLS--DKMKISDIQNLASGFV 273 (300)
Q Consensus 202 ~~~~I~-VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~-eGIp~~qQRLiy~G---KiLk--D~~tL~dyqgIq~G~v 273 (300)
.|..++ |.||+.+ |+...+.+.++++|..|-.-+..+ .|-+-+.-+|++.= |.|. -+.||.++ ||++-.+
T Consensus 273 ~~svvt~i~vR~pd-G~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~ea-GL~nS~~ 349 (356)
T KOG1364|consen 273 DRSVVTSIQVRFPD-GRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEA-GLANSET 349 (356)
T ss_pred CccceeEEEEecCC-ccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHh-ccCcccc
Confidence 344555 9999999 988888889999999988776655 56664555788777 7664 47899999 9998764
No 144
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=27.12 E-value=57 Score=24.93 Aligned_cols=37 Identities=16% Similarity=-0.022 Sum_probs=24.2
Q ss_pred cccCCHHHHHHHHhhcCeeeecC-------CchhheccCCCccc
Q psy7993 84 AEGNDFQLAQAILDGANISVPNG-------FLTESYDELGNKYM 120 (300)
Q Consensus 84 ~~~~d~~~Aq~il~aA~itlp~g-------~l~~~yD~~G~~Y~ 120 (300)
++..|++.+..-|.++|+++-.+ .+.-++|-.|++++
T Consensus 76 ~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE 119 (121)
T cd07233 76 FAVDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIE 119 (121)
T ss_pred EEeCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEE
Confidence 44567888888888899987643 22235666666554
No 145
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=26.73 E-value=3.3e+02 Score=21.65 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=41.7
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEE--cCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYY--GGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy--~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
.+||+..++...+=|-+ .|..+|+.|..+..+|+..--+|+. -|-+++|+.=+ |.+.++.++.++-
T Consensus 4 p~kv~~~~r~~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF---~tLp~nT~lm~L~ 71 (78)
T PF02017_consen 4 PFKVRNHDRSVKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYF---QTLPDNTVLMLLE 71 (78)
T ss_dssp EEEEEETTSSCEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHH---CCSSSSEEEEEEE
T ss_pred cEEEecCCCCceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHH---hhCCCCCEEEEEC
Confidence 46777766455555554 4899999999999999987677743 34444433322 3466666555443
No 146
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=26.08 E-value=2.3e+02 Score=21.64 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=27.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCC
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETS 245 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~ 245 (300)
+.-.+|.|.+.+|+.+|-+.+.++.++..+
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 567889999999999999999999999864
No 147
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=25.49 E-value=1.9e+02 Score=23.31 Aligned_cols=55 Identities=9% Similarity=0.165 Sum_probs=34.7
Q ss_pred cCchHHHHHHHHHHHhCCCC-CceEEEEcCe---e--cCCCCCccccc----CCCCCCEEEEEec
Q psy7993 225 TQETVAMIKKRLQSLEGIET-SKQRWYYGGK---L--LSDKMKISDIQ----NLASGFVIQVIIN 279 (300)
Q Consensus 225 ~tdTV~~LK~kI~e~eGIp~-~qQRLiy~GK---i--LkD~~tL~dyq----gIq~G~vI~vmV~ 279 (300)
+.-+...|++||.+..++++ ..-.|.|.-. . |....=|.++- +-...+++.+.|.
T Consensus 23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 23 LDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 46899999999999999997 4556777643 1 23333333320 2335667666653
No 148
>PRK12302 bssR biofilm formation regulatory protein BssR; Reviewed
Probab=25.41 E-value=52 Score=28.05 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=27.0
Q ss_pred CCCHHHHHHhhhhhcccCC---------CCCCCHHHHHHHHHHHHh
Q psy7993 47 PLTEGQLRSKRDEFWDTAP---------AFEGRKEIWDALHAAASA 83 (300)
Q Consensus 47 ~~t~~~l~~~R~eFwdT~p---------~~~G~~EiW~aL~aA~~~ 83 (300)
-++-+|=+..|+-||+-.- --.=++|-|.|||.|.++
T Consensus 33 YMSVSEsdhLRdN~FeL~re~~~~s~~l~~h~d~eE~~aL~~A~~a 78 (127)
T PRK12302 33 YMSVSESDHLRDNFFELNRELHDKSLRLNLHLDQEEWSALRHAEEA 78 (127)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhHHHhccCCHHHHHHHHHHHHH
Confidence 4566777889999998521 112378999999999774
No 149
>PRK07440 hypothetical protein; Provisional
Probab=25.38 E-value=3e+02 Score=20.77 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=40.5
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+|++ +|+. +++....||.+|-+ +.++++...-+.++|+++.-.. -.+. -+++|+.|-++
T Consensus 5 m~i~v----NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~-w~~~-~L~~gD~IEIv 64 (70)
T PRK07440 5 ITLQV----NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQF-WEQT-QVQPGDRLEIV 64 (70)
T ss_pred eEEEE----CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHH-cCce-ecCCCCEEEEE
Confidence 55555 2665 44567788887764 4578877778899999986322 2233 57889988765
No 150
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=24.53 E-value=65 Score=30.30 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCee-----eecCCchhheccCCCccccceeee
Q psy7993 89 FQLAQAILDGANIS-----VPNGFLTESYDELGNKYMVPVYCL 126 (300)
Q Consensus 89 ~~~Aq~il~aA~it-----lp~g~l~~~yD~~G~~Y~lP~~v~ 126 (300)
-+.|+.|||.+||. ...|.|++.||-.-+.-.|-.-|.
T Consensus 40 ae~Ar~iL~~~gl~~V~Ve~~~G~LtDHYdP~~k~vrLS~~vy 82 (222)
T PF04298_consen 40 AEVARHILDRNGLSDVRVERVPGELTDHYDPRNKVVRLSEDVY 82 (222)
T ss_pred HHHHHHHHHHCCCCCeeEEEeCCCCCCCcCCCCCEEEeCCccC
Confidence 47799999999983 346999999999888555544444
No 151
>PF14908 DUF4496: Domain of unknown function (DUF4496)
Probab=24.02 E-value=1.1e+02 Score=25.65 Aligned_cols=47 Identities=28% Similarity=0.516 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHhhcCeeeec-CCchh--heccCCC---ccccceeeec
Q psy7993 71 KEIWDALHAAASAAEGNDFQLAQAILDGANISVPN-GFLTE--SYDELGN---KYMVPVYCLS 127 (300)
Q Consensus 71 ~EiW~aL~aA~~~~~~~d~~~Aq~il~aA~itlp~-g~l~~--~yD~~G~---~Y~lP~~v~~ 127 (300)
..||+++..=++ +.+....|+.+|+ |.++- .=+..|+ .-.-|.|+++
T Consensus 2 ~~vW~a~~~~i~----------~qL~~~kgV~Ip~fGtFtf~~~~~~~~~~~~~~~rPvF~l~ 54 (140)
T PF14908_consen 2 ERVWNALSEYIE----------RQLSLGKGVSIPGFGTFTFSRQKVDSGGNKNQIRRPVFVLS 54 (140)
T ss_pred HHHHHHHHHHHH----------HHHhcCCCEEeCCCcEEEEEEEeeccCCccccccceEEEEC
Confidence 369999987764 6788899999998 88874 3333332 6678999987
No 152
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=23.98 E-value=1.8e+02 Score=23.23 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=36.6
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCce-EEEEcCeecC
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQ-RWYYGGKLLS 257 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQ-RLiy~GKiLk 257 (300)
.+.+++.|++..|=-++|+-|+...|+.+... .+++.||.-.
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR 62 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKR 62 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceE
Confidence 36889999999999999999999999999766 5788998654
No 153
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=23.68 E-value=1.6e+02 Score=23.54 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=32.0
Q ss_pred EEEccCchHHHHHHHHHHHhCCCCCceEEEEc-C------eecCCCCC---c--ccccCCCCCCEEEEE
Q psy7993 221 MKVFTQETVAMIKKRLQSLEGIETSKQRWYYG-G------KLLSDKMK---I--SDIQNLASGFVIQVI 277 (300)
Q Consensus 221 VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~-G------KiLkD~~t---L--~dyqgIq~G~vI~vm 277 (300)
++++...||++|-+.|.+.. +..+.++|.. | -+|-+..- | .++ -+++|+.|.++
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t-~L~dgD~v~i~ 88 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDY-ILEDGDHVVFI 88 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCccc-CCCCcCEEEEE
Confidence 45546789999999998776 3334445442 2 12222222 2 234 68899998753
No 154
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=23.50 E-value=2.5e+02 Score=25.25 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=43.5
Q ss_pred CCceEEEEEEecCCCceEEEEEccCc-hHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCE
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQE-TVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFV 273 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~td-TV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~v 273 (300)
.+..|-++|++ ..+-|++...+ ++..+++-..+..-..- =++-|+-++..-|+.|| ++-|.-
T Consensus 72 ~g~~~eL~Vkv----Gri~~eie~e~~~~e~ie~ic~e~lPf~y----~v~vG~F~r~kpTVTDy--~KyG~~ 134 (165)
T COG4055 72 KGEEIELKVKV----GRIILEIEDEDETMEKIEEICDEMLPFGY----EVRVGKFTRRKPTVTDY--IKYGED 134 (165)
T ss_pred cCEEEEEEEEe----eEEEEEecCcHhHHHHHHHHHHHhCCCce----eeeeeeeeccCCcchhh--hhhCcc
Confidence 44566677764 45777887775 77777776666543321 25789999999999999 777764
No 155
>KOG3391|consensus
Probab=23.48 E-value=81 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=25.2
Q ss_pred eecCCCCCcccccCCCCCCEEEEEecCCCCC
Q psy7993 254 KLLSDKMKISDIQNLASGFVIQVIINNLAGP 284 (300)
Q Consensus 254 KiLkD~~tL~dyqgIq~G~vI~vmV~kp~~p 284 (300)
|...|++||.++ +++-|+.|-|-+..|...
T Consensus 112 Kg~ddnktL~~~-kf~iGD~lDVaI~~p~~~ 141 (151)
T KOG3391|consen 112 KGIDDNKTLQQT-KFEIGDYLDVAITPPNRR 141 (151)
T ss_pred ccCCccchhhhC-CccccceEEEEecCcccC
Confidence 445789999997 999999999999877644
No 156
>KOG2507|consensus
Probab=23.44 E-value=1.7e+02 Score=30.43 Aligned_cols=78 Identities=13% Similarity=0.230 Sum_probs=59.0
Q ss_pred CCCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEE--EEcCeecCC---CCCcccccCCCCCCEEE
Q psy7993 201 VGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRW--YYGGKLLSD---KMKISDIQNLASGFVIQ 275 (300)
Q Consensus 201 ~~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRL--iy~GKiLkD---~~tL~dyqgIq~G~vI~ 275 (300)
..-+...|.|||.+ |-.++=++..++-...++.-+....+|....--| -|=-|++.| .++|.+. .+-+...|.
T Consensus 310 ~~~d~~rLqiRLPd-Gssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl-~L~psaalv 387 (506)
T KOG2507|consen 310 KKADDVRLQIRLPD-GSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLEL-RLFPSAALV 387 (506)
T ss_pred cccceeEEEEecCC-ccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHh-ccCCcceEE
Confidence 33578999999998 9999999988888888888888777776543333 456666643 5788887 899988887
Q ss_pred EEecC
Q psy7993 276 VIINN 280 (300)
Q Consensus 276 vmV~k 280 (300)
|+-++
T Consensus 388 vlpk~ 392 (506)
T KOG2507|consen 388 VLPKK 392 (506)
T ss_pred EEecC
Confidence 76543
No 157
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=23.42 E-value=3.1e+02 Score=20.18 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=36.8
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+.+ ....||.+|-+. .+++....-+.+.|.++.-..- .. -+++|+.|-++
T Consensus 7 G~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~--~L~~gD~ieIv 59 (65)
T PRK05863 7 EEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-AT--KLRDGARLEVV 59 (65)
T ss_pred CEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hh--hcCCCCEEEEE
Confidence 555544 466787776554 5888888899999998853332 22 38999998865
No 158
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=22.86 E-value=2.7e+02 Score=21.45 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHhhhhhccc
Q psy7993 45 DVPLTEGQLRSKRDEFWDT 63 (300)
Q Consensus 45 ~~~~t~~~l~~~R~eFwdT 63 (300)
..+.|.+||+.+=+.||.+
T Consensus 37 ~~~kT~EeLDaELD~Ym~~ 55 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSK 55 (74)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4577999999999999943
No 159
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=22.45 E-value=3.1e+02 Score=21.91 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=44.6
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHH--hCCCC--Cc--eEEEEcCee--cCCCCCccccc----CCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSL--EGIET--SK--QRWYYGGKL--LSDKMKISDIQ----NLASG 271 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~--eGIp~--~q--QRLiy~GKi--LkD~~tL~dyq----gIq~G 271 (300)
..+.|.|.....+..+++.++.+.|+.+|..++-.+ .++.. .. =-|=-.|+. |-.+.+|.+|. .++.+
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~ 94 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRG 94 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcC
Confidence 458888888754789999999999999998888766 22222 11 122223331 34455666652 36667
Q ss_pred CEEEEEec
Q psy7993 272 FVIQVIIN 279 (300)
Q Consensus 272 ~vI~vmV~ 279 (300)
..+++++-
T Consensus 95 ~~~~L~Lv 102 (106)
T PF00794_consen 95 KDPHLVLV 102 (106)
T ss_dssp --EEEEEE
T ss_pred CCcEEEEE
Confidence 77777653
No 160
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=22.42 E-value=2.6e+02 Score=22.20 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=35.0
Q ss_pred EEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEc
Q psy7993 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYG 252 (300)
Q Consensus 208 VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~ 252 (300)
|++-+.. .+--.|+|.++.|+.+.-.|.-..-|+-++.-..+-.
T Consensus 2 ir~~LPn-qQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~V~~~ 45 (74)
T cd01816 2 IRVFLPN-KQRTVVNVRPGMTLRDALAKALKVRGLQPECCAVFRL 45 (74)
T ss_pred eeEECCC-CCeEEEEecCCcCHHHHHHHHHHHcCCChhHeEEEEc
Confidence 5676776 6778899999999999999999999998765544433
No 161
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=22.16 E-value=3.4e+02 Score=20.76 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=38.3
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+ ++....||++|=++ .|++.+..-..++|.++....-.. . -+++|+.|-++
T Consensus 9 g~~~--e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~~~~~-~-~l~~gD~ievv 62 (68)
T COG2104 9 GKEV--EIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRSQWAD-T-ILKEGDRIEVV 62 (68)
T ss_pred CEEE--EcCCCCcHHHHHHH----hCCCCceEEEEECCEEccchhhhh-c-cccCCCEEEEE
Confidence 4554 44555899887655 588888888999999997544433 3 57888877654
No 162
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=21.76 E-value=92 Score=22.76 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=23.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHH
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQS 238 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e 238 (300)
+.|++++++ |+.|.|+...-.--..||..|+.
T Consensus 1 ~~v~L~SsD-g~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSD-GQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETT-SEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCC-CCEEEeeHHHHHHhHHHHHHHhh
Confidence 468999988 99999997655555566666653
No 163
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=21.60 E-value=1.2e+02 Score=23.80 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 233 KKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 233 K~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|+++-++.++..+| .=|++..+--...+ |++.|++|.+.-+.++
T Consensus 20 ~~~lL~~y~i~~~q-----LP~I~~~DPv~r~~-g~k~GdVvkI~R~S~t 63 (74)
T PF01191_consen 20 KKELLKKYNIKPEQ-----LPKILSSDPVARYL-GAKPGDVVKIIRKSET 63 (74)
T ss_dssp HHHHHHHTT--TTC-----SSEEETTSHHHHHT-T--TTSEEEEEEEETT
T ss_pred HHHHHHHhCCChhh-----CCcccccChhhhhc-CCCCCCEEEEEecCCC
Confidence 45566667887655 33455555545555 9999999998766554
No 164
>PF09920 DUF2150: Uncharacterized protein conserved in archaea (DUF2150); InterPro: IPR014518 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.28 E-value=1.3e+02 Score=27.78 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHhcccCCHHHHHHHHhhcCeeeecCC
Q psy7993 67 FEGRKEIWDALHAAASAAEGNDFQLAQAILDGANISVPNGF 107 (300)
Q Consensus 67 ~~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA~itlp~g~ 107 (300)
|.....|=+.+|+|.++-..+|++.|-.++-.+|-.|..|.
T Consensus 112 ~~~~~~i~~lvk~A~~aE~~edle~Al~~~a~~GA~Vi~G~ 152 (190)
T PF09920_consen 112 YDEEADIEELVKAAVEAEAEEDLEAALGYAAQIGARVIDGE 152 (190)
T ss_pred CCCcCCHHHHHHHHHHHhhccCHHHHHHHHHHhCceeeCCC
Confidence 34466788999999999889999999999999999999875
No 165
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=21.23 E-value=1.2e+02 Score=26.08 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=40.0
Q ss_pred EEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccc-c-CCCCCCEEEEEecC
Q psy7993 222 KVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDI-Q-NLASGFVIQVIINN 280 (300)
Q Consensus 222 eV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dy-q-gIq~G~vI~vmV~k 280 (300)
-|..+.||+++..-|....++++++.-||..+-++.-..++.+. + .=.++.++.+..+.
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~ 106 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVRT 106 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEcc
Confidence 57889999999999999999999885455555455666666542 1 12235566655543
No 166
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=21.14 E-value=2.7e+02 Score=27.75 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=39.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|+.+ ++..+.||.+|-+. .+++.+..-+.++|+++.-.. -.++ -+++|+.|-++-
T Consensus 7 Gk~~--el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~~-w~~t-~LkeGD~IEII~ 61 (326)
T PRK11840 7 GEPR--QVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRSE-YGQV-ALEEGDELEIVH 61 (326)
T ss_pred CEEE--ecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHHH-cCcc-ccCCCCEEEEEE
Confidence 5654 44567788877654 588888888999999996333 2333 689999988764
No 167
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=20.57 E-value=1.7e+02 Score=23.30 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 233 KKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 233 K~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|++|-++.+|...| .=|++.++--...+ |++.|++|-+.-+.++
T Consensus 23 ~~~lL~~y~i~~~q-----LP~I~~~DPv~r~~-g~k~GdVvkI~R~S~t 66 (79)
T PRK09570 23 AKKLLKEYGIKPEQ-----LPKIKASDPVVKAI-GAKPGDVIKIVRKSPT 66 (79)
T ss_pred HHHHHHHcCCCHHH-----CCceeccChhhhhc-CCCCCCEEEEEECCCC
Confidence 55666777887655 33456666556666 9999999997665554
No 168
>PF13605 DUF4141: Domain of unknown function (DUF4141)
Probab=20.47 E-value=52 Score=24.65 Aligned_cols=12 Identities=8% Similarity=-0.058 Sum_probs=11.0
Q ss_pred eeeechhhhhhh
Q psy7993 123 VYCLSYLKFLLL 134 (300)
Q Consensus 123 ~~v~~~P~n~~~ 134 (300)
.||+.||+||.+
T Consensus 21 QWvV~DP~NlAQ 32 (55)
T PF13605_consen 21 QWVVTDPGNLAQ 32 (55)
T ss_pred EEEEeCchHHHH
Confidence 599999999997
Done!