Query psy7993
Match_columns 300
No_of_seqs 249 out of 712
Neff 4.6
Searched_HMMs 29240
Date Sat Aug 17 00:03:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksn_A Ubiquitin domain-contai 100.0 2.3E-52 7.8E-57 352.6 9.7 116 21-136 6-121 (137)
2 3m62_B UV excision repair prot 99.8 9.6E-20 3.3E-24 146.3 8.1 92 205-298 1-94 (106)
3 1ttn_A DC-UBP, dendritic cell- 99.8 2.5E-19 8.6E-24 143.5 10.1 84 199-284 17-100 (106)
4 3plu_A Ubiquitin-like modifier 99.8 5.9E-19 2E-23 141.3 10.7 74 202-277 18-91 (93)
5 2wyq_A HHR23A, UV excision rep 99.8 1.4E-18 4.8E-23 131.7 11.1 79 204-284 4-85 (85)
6 4dwf_A HLA-B-associated transc 99.8 2E-18 6.8E-23 132.9 11.5 79 204-285 4-82 (90)
7 4a20_A Ubiquitin-like protein 99.8 1.1E-18 3.7E-23 139.9 9.8 77 203-281 17-97 (98)
8 1uel_A HHR23B, UV excision rep 99.8 2.6E-18 9E-23 134.7 11.7 82 206-289 1-85 (95)
9 3phx_B Ubiquitin-like protein 99.8 2.4E-18 8.2E-23 129.2 10.9 74 204-279 3-76 (79)
10 2faz_A Ubiquitin-like containi 99.8 6E-18 2.1E-22 126.5 10.8 75 205-281 2-78 (78)
11 2kk8_A Uncharacterized protein 99.7 6E-18 2.1E-22 130.8 9.8 74 204-279 9-83 (84)
12 1uh6_A Ubiquitin-like 5; beta- 99.7 4.9E-18 1.7E-22 137.3 9.5 75 202-278 25-99 (100)
13 2lxa_A Ubiquitin-like protein 99.7 1.9E-18 6.5E-23 135.6 6.9 75 205-281 1-79 (87)
14 3v6c_B Ubiquitin; structural g 99.7 1.2E-17 4E-22 129.5 11.0 75 203-279 15-89 (91)
15 3dbh_I NEDD8; cell cycle, acti 99.7 1.6E-17 5.3E-22 126.4 10.9 78 202-281 9-86 (88)
16 2uyz_B Small ubiquitin-related 99.7 1.1E-17 3.9E-22 125.5 9.9 75 205-281 3-77 (79)
17 4eew_A Large proline-rich prot 99.7 1.6E-17 5.5E-22 127.3 10.9 73 204-279 16-88 (88)
18 4fbj_B NEDD8; effector-HOST ta 99.7 1.1E-17 3.8E-22 129.5 9.7 76 206-283 1-76 (88)
19 1wx7_A Ubiquilin 3; ubiquitin- 99.7 3E-17 1E-21 131.0 12.2 87 204-293 16-102 (106)
20 2dzi_A Ubiquitin-like protein 99.7 1.8E-17 6.2E-22 124.0 10.2 75 204-280 6-80 (81)
21 1wju_A NEDD8 ultimate buster-1 99.7 1.4E-17 4.9E-22 134.6 10.2 81 204-285 14-97 (100)
22 2hj8_A Interferon-induced 17 k 99.7 1.1E-17 3.8E-22 129.2 9.1 79 204-284 3-81 (88)
23 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.2E-17 7.4E-22 128.2 10.5 77 206-284 2-78 (96)
24 1wyw_B Ubiquitin-like protein 99.7 2.1E-17 7.2E-22 130.4 10.6 79 201-281 17-95 (97)
25 1ndd_A NEDD8, protein (ubiquit 99.7 2.9E-17 9.8E-22 120.7 10.2 74 206-281 1-74 (76)
26 1wy8_A NP95-like ring finger p 99.7 5E-17 1.7E-21 124.5 11.4 78 204-283 6-85 (89)
27 3mtn_B UBA80, ubcep1, ubiquiti 99.7 4.9E-17 1.7E-21 122.4 10.9 77 204-282 2-78 (85)
28 2bwf_A Ubiquitin-like protein 99.7 5.7E-17 1.9E-21 120.2 11.0 73 205-280 4-76 (77)
29 1wgg_A Ubiquitin carboxyl-term 99.7 3.8E-17 1.3E-21 129.3 10.5 90 203-298 5-95 (96)
30 1wia_A Hypothetical ubiquitin- 99.7 3.9E-17 1.3E-21 127.4 10.4 82 204-290 6-88 (95)
31 3n3k_B Ubiquitin; hydrolase, p 99.7 2.7E-17 9.2E-22 124.1 9.2 77 204-282 2-78 (85)
32 4hcn_B Polyubiquitin, ubiquiti 99.7 3.3E-17 1.1E-21 129.1 9.9 78 202-281 19-96 (98)
33 3a9j_A Ubiquitin; protein comp 99.7 6.1E-17 2.1E-21 119.0 10.7 74 206-281 1-74 (76)
34 1v5o_A 1700011N24RIK protein; 99.7 5.7E-17 1.9E-21 129.0 11.2 86 204-290 6-95 (102)
35 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 7E-17 2.4E-21 123.0 11.0 77 204-282 6-82 (87)
36 2kan_A Uncharacterized protein 99.7 5.4E-17 1.9E-21 127.9 10.3 79 203-284 13-92 (94)
37 1wx8_A Riken cDNA 4931431F19; 99.7 4.5E-17 1.5E-21 127.1 9.1 80 204-286 16-95 (96)
38 2klc_A Ubiquilin-1; ubiquitin- 99.7 1E-16 3.5E-21 127.6 11.2 78 204-284 24-101 (101)
39 3vdz_A Ubiquitin-40S ribosomal 99.7 1.6E-16 5.3E-21 128.5 12.4 76 204-281 34-109 (111)
40 1yqb_A Ubiquilin 3; structural 99.7 1E-16 3.4E-21 127.7 10.7 79 204-285 21-99 (100)
41 1sif_A Ubiquitin; hydrophobic 99.7 9.9E-17 3.4E-21 124.1 9.5 76 205-282 9-84 (88)
42 1wgh_A Ubiquitin-like 3, HCG-1 99.7 2.2E-16 7.5E-21 130.4 11.8 86 204-292 15-110 (116)
43 1yx5_B Ubiquitin; proteasome, 99.7 1.8E-16 6.2E-21 124.3 10.6 76 206-283 1-76 (98)
44 1se9_A Ubiquitin family; ubiqu 99.7 1.6E-16 5.5E-21 133.3 10.7 77 204-282 15-105 (126)
45 2gow_A HCG-1 protein, ubiquiti 99.7 2.7E-16 9.1E-21 131.4 11.5 78 202-281 14-101 (125)
46 2daf_A FLJ35834 protein; hypot 99.7 2.3E-16 8E-21 131.1 10.3 79 203-282 13-91 (118)
47 3m63_B Ubiquitin domain-contai 99.7 4.7E-17 1.6E-21 129.9 4.8 75 204-281 27-101 (101)
48 1j8c_A Ubiquitin-like protein 99.7 5.2E-16 1.8E-20 128.6 10.5 78 204-284 31-108 (125)
49 1x1m_A Ubiquitin-like protein 99.6 3.7E-16 1.3E-20 125.4 9.1 79 204-284 11-104 (107)
50 1wxv_A BAG-family molecular ch 99.6 7E-16 2.4E-20 119.6 10.3 78 204-284 6-89 (92)
51 2kdi_A Ubiquitin, vacuolar pro 99.6 6.3E-16 2.2E-20 125.8 10.3 78 204-283 8-85 (114)
52 3b1l_X E3 ubiquitin-protein li 99.5 1.3E-17 4.5E-22 123.9 0.0 73 206-280 1-73 (76)
53 1v2y_A 3300001G02RIK protein; 99.6 2.1E-16 7.1E-21 128.5 6.8 77 202-280 4-96 (105)
54 1wgd_A Homocysteine-responsive 99.6 5.6E-16 1.9E-20 120.6 9.0 78 204-282 6-88 (93)
55 3rt3_B Ubiquitin-like protein 99.6 9.8E-16 3.3E-20 128.8 11.1 77 203-281 79-155 (159)
56 4dbg_A Ranbp-type and C3HC4-ty 99.6 9.6E-16 3.3E-20 124.9 10.6 76 204-280 23-100 (105)
57 2l7r_A Ubiquitin-like protein 99.6 6.1E-16 2.1E-20 121.1 9.0 73 204-280 18-90 (93)
58 1we6_A Splicing factor, putati 99.6 6.8E-16 2.3E-20 124.2 9.1 79 204-283 26-107 (111)
59 2ojr_A Ubiquitin; lanthide-bin 99.6 1.7E-15 5.8E-20 122.1 11.2 77 203-281 33-109 (111)
60 2fnj_B Transcription elongatio 99.6 5.1E-16 1.8E-20 128.9 8.3 71 206-279 3-80 (118)
61 3l0w_B Monoubiquitinated proli 99.6 1.4E-15 4.6E-20 131.8 10.8 76 206-283 1-76 (169)
62 3rt3_B Ubiquitin-like protein 99.6 1.5E-15 5.1E-20 127.7 10.7 73 206-280 3-77 (159)
63 1v5t_A 8430435I17RIK protein; 99.6 8.4E-16 2.9E-20 119.7 8.4 75 204-281 6-84 (90)
64 4ajy_B Transcription elongatio 99.6 7.4E-16 2.5E-20 128.1 8.6 73 207-280 2-81 (118)
65 1we7_A SF3A1 protein; structur 99.6 2.1E-15 7E-20 122.3 10.1 78 204-282 24-110 (115)
66 2kd0_A LRR repeats and ubiquit 99.6 2.3E-15 7.9E-20 116.2 9.7 73 205-280 12-84 (85)
67 3u30_A Ubiquitin, linear DI-ub 99.6 3.3E-15 1.1E-19 127.7 11.5 78 202-281 17-94 (172)
68 1v86_A DNA segment, CHR 7, way 99.6 1.3E-15 4.4E-20 120.0 7.8 77 203-283 15-91 (95)
69 2kdb_A Homocysteine-responsive 99.6 1.3E-15 4.4E-20 122.1 7.4 75 202-277 20-99 (99)
70 3q3f_A Ribonuclease/ubiquitin 99.6 3.1E-15 1.1E-19 132.7 10.2 78 204-283 104-181 (189)
71 3b08_A Polyubiquitin-C, ubiqui 99.6 1.2E-14 4E-19 119.7 11.4 76 204-281 75-150 (152)
72 4b6w_A Tubulin-specific chaper 99.6 4.9E-15 1.7E-19 115.7 8.6 76 206-282 3-86 (86)
73 3b08_A Polyubiquitin-C, ubiqui 99.6 9.7E-15 3.3E-19 120.2 10.6 75 206-282 1-75 (152)
74 3u5e_m 60S ribosomal protein L 99.6 2E-16 6.8E-21 130.7 0.2 76 206-283 1-76 (128)
75 3u30_A Ubiquitin, linear DI-ub 99.6 7.5E-15 2.6E-19 125.5 9.7 75 203-279 94-168 (172)
76 1oqy_A HHR23A, UV excision rep 99.5 7.3E-15 2.5E-19 141.8 9.0 77 204-282 6-85 (368)
77 2kjr_A CG11242; UBL, ubiquitin 99.5 2.3E-14 7.9E-19 113.9 10.3 73 204-277 14-93 (95)
78 3u5c_f 40S ribosomal protein S 99.5 9.2E-16 3.2E-20 131.7 0.0 76 206-283 1-76 (152)
79 2dzj_A Synaptic glycoprotein S 99.5 1.3E-14 4.6E-19 113.4 6.6 71 204-276 9-85 (88)
80 2kj6_A Tubulin folding cofacto 99.5 7.3E-14 2.5E-18 111.6 9.6 75 204-279 13-95 (97)
81 2dzm_A FAS-associated factor 1 99.5 7.1E-14 2.4E-18 112.5 8.2 74 205-282 9-84 (100)
82 1v6e_A Cytoskeleton-associated 99.5 1.2E-13 4.2E-18 108.4 8.9 76 205-281 7-89 (95)
83 3ai5_A Yeast enhanced green fl 99.5 1.5E-13 5.1E-18 130.0 10.5 76 202-279 230-305 (307)
84 1wf9_A NPL4 family protein; be 99.5 1.4E-13 4.6E-18 110.7 8.1 73 205-280 7-95 (107)
85 1t0y_A Tubulin folding cofacto 99.4 6.8E-13 2.3E-17 109.0 10.8 79 204-283 5-90 (122)
86 3shq_A UBLCP1; phosphatase, hy 99.4 3.1E-13 1.1E-17 128.0 9.3 76 204-282 4-82 (320)
87 2io1_B Small ubiquitin-related 99.4 1.2E-12 4.3E-17 103.7 10.4 79 203-283 5-83 (94)
88 2xzm_9 RPS31E; ribosome, trans 99.4 6.9E-14 2.4E-18 124.4 0.0 69 206-281 1-69 (189)
89 2kzr_A Ubiquitin thioesterase 99.3 1.1E-12 3.9E-17 100.9 6.1 72 206-280 1-78 (86)
90 1wm3_A Ubiquitin-like protein 99.3 4.7E-12 1.6E-16 95.0 9.4 71 206-278 2-72 (72)
91 3a4r_A Nfatc2-interacting prot 99.3 1.4E-11 4.7E-16 94.4 10.5 74 202-277 4-78 (79)
92 2io0_B Small ubiquitin-related 99.3 1.5E-11 5E-16 97.2 10.7 78 204-283 4-81 (91)
93 2d07_B Ubiquitin-like protein 99.3 2.6E-11 8.8E-16 95.7 10.7 77 202-280 14-90 (93)
94 1wz0_A Ubiquitin-like protein 99.3 3.1E-11 1.1E-15 97.6 11.0 82 201-284 20-101 (104)
95 2eke_C Ubiquitin-like protein 99.2 1.3E-10 4.4E-15 94.5 10.8 76 202-280 28-103 (106)
96 2k8h_A Small ubiquitin protein 99.2 6.2E-11 2.1E-15 96.9 8.8 79 202-282 23-101 (110)
97 1wjn_A Tubulin-folding protein 99.2 2E-10 6.7E-15 90.2 10.5 79 203-282 7-95 (97)
98 3kyd_D Small ubiquitin-related 98.9 1.1E-08 3.7E-13 84.5 10.6 77 202-280 37-113 (115)
99 2ksn_A Ubiquitin domain-contai 98.8 2E-09 6.7E-14 91.2 2.1 51 141-192 78-128 (137)
100 3pge_A SUMO-modified prolifera 98.7 6.9E-08 2.4E-12 86.5 10.0 79 202-283 26-104 (200)
101 3tix_A Ubiquitin-like protein 98.6 1.4E-07 4.8E-12 84.6 8.4 78 202-282 54-131 (207)
102 3goe_A DNA repair protein RAD6 98.5 9.4E-07 3.2E-11 68.9 10.6 73 204-278 8-81 (82)
103 4efo_A Serine/threonine-protei 98.3 8.8E-07 3E-11 70.9 6.5 52 204-257 13-64 (94)
104 2pjh_A Protein NPL4, nuclear p 98.2 8.4E-07 2.9E-11 68.1 3.3 69 205-276 4-77 (80)
105 2jxx_A Nfatc2-interacting prot 98.2 1.4E-05 4.7E-10 64.0 10.5 74 202-277 22-96 (97)
106 3v7o_A Minor nucleoprotein VP3 98.1 3.1E-07 1.1E-11 83.4 0.0 78 203-283 19-96 (227)
107 3uf8_A Ubiquitin-like protein 98.1 1.4E-05 4.9E-10 71.0 9.6 77 203-282 19-95 (209)
108 2l76_A Nfatc2-interacting prot 97.8 0.00021 7.3E-09 57.2 11.6 77 201-280 17-93 (95)
109 3ix6_A TS, tsase, thymidylate 97.7 5.5E-06 1.9E-10 80.0 0.0 77 203-282 19-95 (360)
110 4da1_A Protein phosphatase 1K, 97.7 6.3E-06 2.2E-10 78.7 0.0 78 202-282 27-104 (389)
111 2kc2_A Talin-1, F1; FERM, adhe 97.4 0.00027 9.3E-09 59.2 6.5 69 206-276 12-119 (128)
112 2bps_A YUKD protein; ubiquitin 97.2 0.00075 2.6E-08 52.4 6.8 71 205-276 4-80 (81)
113 3qx1_A FAS-associated factor 1 97.1 0.0026 8.9E-08 48.4 8.9 70 204-276 6-80 (84)
114 2dzk_A UBX domain-containing p 96.3 0.037 1.3E-06 44.3 10.6 73 204-278 12-89 (109)
115 2cr5_A Reproduction 8; UBX dom 96.1 0.033 1.1E-06 44.5 9.0 71 203-276 21-95 (109)
116 1wj4_A KIAA0794 protein; UBX d 96.1 0.021 7E-07 47.0 7.9 72 203-277 41-117 (124)
117 2al3_A TUG long isoform; TUG U 95.7 0.041 1.4E-06 43.6 7.8 77 205-283 9-85 (90)
118 1s3s_G P47 protein; AAA ATPase 95.4 0.035 1.2E-06 45.7 7.0 72 204-277 51-126 (127)
119 4a3p_A Ubiquitin carboxyl-term 93.6 0.35 1.2E-05 42.7 9.4 77 205-282 127-211 (217)
120 3jyu_A Ubiquitin carboxyl-term 93.6 0.42 1.4E-05 42.7 10.0 79 204-283 138-224 (231)
121 4e71_A Plexin-B2, MM1; transme 93.4 0.32 1.1E-05 39.8 8.0 73 204-277 10-108 (111)
122 3ivf_A Talin-1; FERM domain, c 91.9 0.69 2.4E-05 43.3 9.4 70 205-277 3-82 (371)
123 2r2o_A Plexin-B1; effector dom 91.2 1.4 4.7E-05 37.4 9.5 76 203-279 22-128 (138)
124 3rpf_C Molybdopterin convertin 90.1 0.99 3.4E-05 33.0 6.9 66 206-277 1-68 (74)
125 1vjk_A Molybdopterin convertin 88.2 4.6 0.00016 30.9 9.8 67 205-277 9-92 (98)
126 3h6n_A Plexin-D1; structural g 88.1 2.3 7.8E-05 35.5 8.4 62 216-278 16-103 (127)
127 1oey_A P67-PHOX, neutrophil cy 87.8 1.2 4.1E-05 34.5 6.1 69 205-278 5-80 (83)
128 4e74_A Plexin-A4; RBD, structu 87.6 3.7 0.00013 33.7 9.3 75 204-279 12-114 (117)
129 2juo_A GA-binding protein alph 86.5 2 6.7E-05 33.9 6.6 60 220-280 6-65 (89)
130 2l32_A Small archaeal modifier 82.9 1.7 5.9E-05 32.4 4.7 60 206-277 1-60 (74)
131 3dwg_C 9.5 kDa culture filtrat 81.9 5.2 0.00018 30.1 7.2 69 206-277 1-87 (93)
132 1ryj_A Unknown; beta/alpha pro 80.7 13 0.00043 26.8 8.7 60 206-277 5-64 (70)
133 2kvr_A Ubiquitin carboxyl-term 80.5 1.8 6.3E-05 35.7 4.5 33 220-252 59-91 (130)
134 3po0_A Small archaeal modifier 79.3 11 0.00038 27.9 8.3 55 217-277 18-83 (89)
135 1h4r_A Merlin; FERM, neurofibr 78.9 10 0.00034 34.3 9.4 76 202-280 19-99 (314)
136 4eut_A Serine/threonine-protei 78.3 5.3 0.00018 36.6 7.5 48 216-263 321-369 (396)
137 3kuz_A Plexin-C1; structural g 78.2 28 0.00097 28.9 11.2 61 217-279 39-125 (126)
138 1vd2_A Protein kinase C, IOTA 76.6 19 0.00067 27.9 9.1 57 204-263 5-62 (89)
139 3ivf_A Talin-1; FERM domain, c 76.6 15 0.0005 34.2 10.0 75 203-279 83-167 (371)
140 2l52_A Methanosarcina acetivor 75.7 16 0.00055 28.0 8.5 69 204-277 2-93 (99)
141 1fm0_D Molybdopterin convertin 75.7 5.5 0.00019 28.9 5.5 54 217-277 17-75 (81)
142 3hm6_X Plexin-B1; structural g 74.4 12 0.00042 38.5 9.4 75 202-277 254-359 (644)
143 1ef1_A Moesin; membrane, FERM 72.3 15 0.00052 32.6 8.7 72 206-280 2-79 (294)
144 1wgr_A Growth factor receptor- 71.6 8.2 0.00028 30.7 5.9 62 203-265 7-75 (100)
145 2qjl_A URM1, ubiquitin-related 71.3 29 0.001 26.4 9.0 36 205-240 1-45 (99)
146 3qij_A Protein 4.1; cytoskelet 69.6 15 0.00051 33.3 8.1 75 202-278 14-94 (296)
147 3ig3_A Plxna3 protein; plexin 66.8 34 0.0012 35.3 10.6 76 202-278 230-333 (627)
148 1tyg_B YJBS; alpha beta barrel 66.3 10 0.00035 29.1 5.3 62 204-277 19-81 (87)
149 2i1j_A Moesin; FERM, coiled-co 66.2 25 0.00085 35.4 9.5 74 204-280 3-82 (575)
150 2kmc_A Fermitin family homolog 60.9 37 0.0013 27.3 7.7 54 217-276 33-96 (102)
151 2ylm_A Ubiquitin carboxyl-term 60.3 6.9 0.00024 39.0 4.2 32 221-252 40-71 (530)
152 3ge3_C Toluene-4-monooxygenase 59.5 60 0.0021 25.2 10.0 72 206-278 4-82 (84)
153 2daj_A KIAA0977 protein, COBL- 58.8 17 0.00058 28.7 5.3 65 204-270 9-76 (91)
154 1wgk_A Riken cDNA 2900073H19 p 56.6 54 0.0019 26.1 8.2 36 205-240 11-56 (114)
155 2cu3_A Unknown function protei 53.9 18 0.00062 25.4 4.4 53 216-277 6-58 (64)
156 2q5w_D Molybdopterin convertin 53.8 18 0.00063 25.8 4.5 54 217-277 16-71 (77)
157 2g1e_A Hypothetical protein TA 50.7 54 0.0019 23.8 6.9 55 221-277 19-84 (90)
158 3au4_A Myosin-X; protein-prote 50.2 24 0.00083 34.6 6.2 62 202-264 213-280 (555)
159 2lgx_A Fermitin family homolog 50.0 13 0.00046 30.3 3.5 63 207-275 26-98 (112)
160 3onh_A Ubiquitin-activating en 49.3 39 0.0013 28.1 6.3 51 225-277 18-77 (127)
161 1ip9_A BEM1 protein; ubiquitin 48.0 24 0.00082 27.5 4.5 47 205-254 12-58 (85)
162 1f0z_A THis protein; ubiquitin 47.3 14 0.00047 26.2 2.9 54 216-277 7-60 (66)
163 2inc_C TOUB protein; DIIRON, 4 45.0 1.1E+02 0.0036 23.8 10.3 60 219-279 15-82 (83)
164 2kl0_A Putative thiamin biosyn 43.3 18 0.00063 26.5 3.2 53 216-277 7-59 (73)
165 3qa8_A MGC80376 protein; kinas 42.5 23 0.00078 36.4 4.7 50 216-265 321-371 (676)
166 3pvl_A Myosin VIIA isoform 1; 38.7 43 0.0015 34.2 6.1 49 202-251 260-309 (655)
167 2hj1_A Hypothetical protein; s 38.3 84 0.0029 24.5 6.4 68 204-277 11-83 (97)
168 2k9x_A Tburm1, uncharacterized 37.9 7.9 0.00027 31.0 0.4 68 206-276 5-95 (110)
169 4fx5_A VON willebrand factor t 37.7 11 0.00036 36.8 1.3 32 68-99 377-408 (464)
170 2kmm_A Guanosine-3',5'-BIS(dip 36.9 52 0.0018 22.9 4.6 62 206-278 1-62 (73)
171 1rws_A Hypothetical protein PF 31.7 12 0.00043 27.3 0.6 47 220-276 24-70 (77)
172 4gmv_A RAS-associated and plec 31.0 1.2E+02 0.0042 27.7 7.3 70 202-272 28-105 (281)
173 2ylm_A Ubiquitin carboxyl-term 29.9 1E+02 0.0035 30.5 7.0 73 204-276 129-214 (530)
174 1c1y_B Proto-onkogene serine/t 29.0 1.3E+02 0.0045 22.8 5.9 42 207-249 3-44 (77)
175 1q1o_A Cell division control p 28.5 47 0.0016 26.3 3.5 27 217-243 23-49 (98)
176 2bt6_A Adrenodoxin 1; rutheniu 27.9 87 0.003 23.8 4.9 32 203-235 4-35 (108)
177 2l05_A Serine/threonine-protei 26.6 1.6E+02 0.0055 23.2 6.2 44 206-250 18-61 (95)
178 3m20_A 4-oxalocrotonate tautom 26.0 1E+02 0.0034 21.0 4.5 31 229-259 19-59 (62)
179 2rqw_B 24-meric peptide from s 25.1 39 0.0013 20.9 1.8 15 281-295 10-24 (26)
180 1wxm_A A-RAF proto-oncogene se 24.9 1.4E+02 0.0048 23.2 5.5 43 207-250 9-51 (86)
181 2v1y_A Phosphatidylinositol-4, 24.8 1.3E+02 0.0045 24.1 5.5 36 204-240 18-53 (108)
182 4g6x_A Glyoxalase/bleomycin re 24.2 36 0.0012 26.6 2.1 38 84-121 104-148 (155)
183 2lvc_A Obscurin-like protein 1 23.2 2E+02 0.0068 20.7 6.0 35 243-280 33-67 (91)
184 3jz0_A Lincosamide nucleotidyl 22.3 49 0.0017 30.5 2.9 37 67-107 241-277 (287)
185 1y8x_B Ubiquitin-activating en 22.3 23 0.00078 27.9 0.5 58 218-276 6-81 (98)
186 3l7t_A SMU.1112C, putative unc 22.1 42 0.0015 24.3 2.0 36 85-120 88-131 (134)
187 2k5p_A THis protein, thiamine- 21.7 71 0.0024 23.6 3.2 54 216-277 7-63 (78)
188 2c7h_A RBBP6, retinoblastoma-b 21.3 2.8E+02 0.0097 21.3 7.7 40 204-244 5-46 (86)
189 3f6q_A Integrin-linked protein 21.2 40 0.0014 26.4 1.8 30 69-101 1-30 (179)
190 2y8d_A Erythrocyte membrane pr 20.9 25 0.00087 32.7 0.6 23 55-82 134-156 (306)
191 3u5c_S 40S ribosomal protein S 20.3 28 0.00097 29.4 0.7 58 67-128 22-88 (146)
192 2wau_A VAR2CSA, erythrocyte me 20.3 27 0.00091 32.5 0.6 23 55-82 129-151 (302)
No 1
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=2.3e-52 Score=352.57 Aligned_cols=116 Identities=63% Similarity=1.033 Sum_probs=111.0
Q ss_pred CCCCCCCCCCCCCCCcccccccccCCCCCHHHHHHhhhhhcccCCCCCCCHHHHHHHHHHHHhcccCCHHHHHHHHhhcC
Q psy7993 21 NANAPNAGLRKNHPLCHEIIRWKSDVPLTEGQLRSKRDEFWDTAPAFEGRKEIWDALHAAASAAEGNDFQLAQAILDGAN 100 (300)
Q Consensus 21 ~~~~~~~~~~~n~pl~~~~~~w~s~~~~t~~~l~~~R~eFwdT~p~~~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA~ 100 (300)
++..|+++.|+|+|||+++|+|+|+.+||++||++||+|||||||||+||+|||+|||+||++|++||++|||+|||+||
T Consensus 6 ~~~~~~~~~~~n~pl~~~~~~W~s~~~~Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~Dl~tAQ~IldaAg 85 (137)
T 2ksn_A 6 NSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGAN 85 (137)
T ss_dssp SCCSSSCSSCSSCCCCCCCCCSSCSSCCSHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred CCCCCCcccCCCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Confidence 35557788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCchhheccCCCccccceeeechhhhhhhhc
Q psy7993 101 ISVPNGFLTESYDELGNKYMVPVYCLSYLKFLLLHM 136 (300)
Q Consensus 101 itlp~g~l~~~yD~~G~~Y~lP~~v~~~P~n~~~~~ 136 (300)
||||+|||+.|||++|++|+||+||+++|+||+.+.
T Consensus 86 Itvp~gdL~~cYDe~G~~Y~LP~yvls~P~Nl~~~~ 121 (137)
T 2ksn_A 86 ITLPHGALTECYDELGNRYQLPVYCLAPPINMIEEK 121 (137)
T ss_dssp CBCSSCCSSEEEETTTEEEECCGGGTCCSTTTCCCT
T ss_pred CcccCCcHHHHHhccCCccCCCeeEeeCCccccccc
Confidence 999999999999999999999999999999999743
No 2
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.6e-20 Score=146.34 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=70.5
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCCC
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAGP 284 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~p 284 (300)
+|+|+||+.+ |+.+.|+|.+++||++||++|+++.|||+++|||+|.||+|+|+.+|.+| ||++|++|++++++|..+
T Consensus 1 mm~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 1 MVSLTFKNFK-KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSEC-GLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp --CEEEECTT-CCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECCC----
T ss_pred CEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHc-CCCCCCEEEEEEcCCCCC
Confidence 4899999987 99999999999999999999999999999999999999999999999999 999999999999986643
Q ss_pred C--CCCCcccCCCccc
Q psy7993 285 K--LVPPVESMKSVTS 298 (300)
Q Consensus 285 ~--~~~~~~~~~~~~~ 298 (300)
. +..+..++.|+||
T Consensus 79 ~~~~~~~~~~s~s~~~ 94 (106)
T 3m62_B 79 KTKVTERDPNSSSVDK 94 (106)
T ss_dssp ----------------
T ss_pred CCCCCCCCCCCCCchh
Confidence 2 3333444455554
No 3
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=2.5e-19 Score=143.50 Aligned_cols=84 Identities=36% Similarity=0.678 Sum_probs=76.1
Q ss_pred CCCCCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 199 EGVGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 199 ~~~~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
....+..|+|+||+.. |+.+.++|.+++||++||++|+++.|||+++|||+|.||.|+|..+|.+| ||++|++||+++
T Consensus 17 ~~~~~~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~ti~lv~ 94 (106)
T 1ttn_A 17 PPNSGYECQLRLRLST-GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEEL-KIPKDYVVQVIV 94 (106)
T ss_dssp ----CCSEEEEEEETT-TEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHC-CCSSSCEEEEEC
T ss_pred CCCCCCeEEEEEEcCC-CCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEEE
Confidence 3445678999999988 89999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCC
Q psy7993 279 NNLAGP 284 (300)
Q Consensus 279 ~kp~~p 284 (300)
+++..+
T Consensus 95 ~~~~~~ 100 (106)
T 1ttn_A 95 SQPVQN 100 (106)
T ss_dssp CCSSCC
T ss_pred eCCCCC
Confidence 887653
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.78 E-value=5.9e-19 Score=141.25 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=70.3
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
...+|+|+||+.. |+.+.|++++++||++||++|++++|||+++|||+|+||+|+|..||++| +|++|++|++.
T Consensus 18 ~~~mIqI~Vk~~~-Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY-~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRL-GKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY-EVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTT-SCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEE
T ss_pred CCceEEEEEECCC-CCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHc-CCCCCCEEEEE
Confidence 3468999999998 99999999999999999999999999999999999999999999999999 99999999985
No 5
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.78 E-value=1.4e-18 Score=131.68 Aligned_cols=79 Identities=20% Similarity=0.410 Sum_probs=71.3
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHH---hCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSL---EGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~---eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
..|+|+||+.+ |+.+.++|.+++||++||++|+++ +|+|+++|||+|.||+|+|+.+|.+| ||++|++|++++++
T Consensus 4 ~~m~i~vk~~~-g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQ-QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETT-SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGG-CCCTTSEEEEEEC-
T ss_pred ceEEEEEEECC-CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHc-CCCCCCEEEEEEcC
Confidence 46999999997 899999999999999999999998 89999999999999999999999999 99999999999988
Q ss_pred CCCC
Q psy7993 281 LAGP 284 (300)
Q Consensus 281 p~~p 284 (300)
|..|
T Consensus 82 ~~~~ 85 (85)
T 2wyq_A 82 TKAG 85 (85)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.77 E-value=2e-18 Score=132.87 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=72.7
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+||+.+ |+.+.|+|.+++||.+||++|++++|||+++|||+|.||.|+|..+|.+| +| +|++||++++.+..
T Consensus 4 ~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~-~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLD-SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETT-CCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHc-CC-CCcEEEEEecCCCC
Confidence 57999999998 99999999999999999999999999999999999999999999999999 99 89999999987654
Q ss_pred CC
Q psy7993 284 PK 285 (300)
Q Consensus 284 p~ 285 (300)
+.
T Consensus 81 ~~ 82 (90)
T 4dwf_A 81 TH 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 7
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.77 E-value=1.1e-18 Score=139.92 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=70.9
Q ss_pred CceEEEEEEecCCCceEEE--EEccCchHHHHHHHH-HHHhCCCCCceEEEEcCeecCCCCCcccccCC-CCCCEEEEEe
Q psy7993 203 GQEIALKLRLSNTCQDVRM--KVFTQETVAMIKKRL-QSLEGIETSKQRWYYGGKLLSDKMKISDIQNL-ASGFVIQVII 278 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~V--eV~~tdTV~~LK~kI-~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgI-q~G~vI~vmV 278 (300)
...|+|+||+.+ |+.|.+ +|.+++||++||++| ++..|+|+++|||+|.||+|+|..+|++| +| ++|++|++|+
T Consensus 17 ~~~m~I~VKtl~-g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-~I~~~g~ti~lmv 94 (98)
T 4a20_A 17 NAAVHLTLKKIQ-APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDL-KVTPANSTITVMI 94 (98)
T ss_dssp -CCEEEEEEECS-SSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGS-CCBTTBCEEEEEE
T ss_pred CCCEEEEEEcCC-CCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHc-CcCCCCCEEEEEE
Confidence 356999999998 887666 566999999999999 88899999999999999999999999999 99 9999999999
Q ss_pred cCC
Q psy7993 279 NNL 281 (300)
Q Consensus 279 ~kp 281 (300)
++|
T Consensus 95 skp 97 (98)
T 4a20_A 95 KPN 97 (98)
T ss_dssp CCC
T ss_pred eCC
Confidence 987
No 8
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.6e-18 Score=134.72 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=76.4
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHH---hCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSL---EGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~---eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|+|+||..+ |+.+.++|.+++||++||++|+++ +|||+++|||+|.||+|+|+.+|.+| ||++|++|++++++|.
T Consensus 1 M~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQ-QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY-KIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETT-CCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGG-TCCSSSEEEEEESSCC
T ss_pred CEEEEEeCC-CCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEeCCC
Confidence 689999987 999999999999999999999999 89999999999999999999999999 9999999999999887
Q ss_pred CCCCCCC
Q psy7993 283 GPKLVPP 289 (300)
Q Consensus 283 ~p~~~~~ 289 (300)
...+.++
T Consensus 79 ~~~~~~~ 85 (95)
T 1uel_A 79 AVSTPAP 85 (95)
T ss_dssp CCCCCCC
T ss_pred CCCCCCc
Confidence 6666554
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=129.21 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=71.2
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
..|+|+||+.+ |+.+.++|.+++||++||++|++++|||+++|||+|.||.|+|+.+|.+| ||++|++|+++++
T Consensus 3 ~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~l~l~~r 76 (79)
T 3phx_B 3 EPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLR 76 (79)
T ss_dssp CCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEEC
T ss_pred CCEEEEEEeCC-CCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEe
Confidence 35899999998 99999999999999999999999999999999999999999999999999 9999999999886
No 10
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=6e-18 Score=126.51 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=71.1
Q ss_pred eEEEEEEecCCCceE-EEE-EccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 205 EIALKLRLSNTCQDV-RMK-VFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv-~Ve-V~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
.|+|+||+.+ |+.+ .++ |.+++||++||++|+++.|||+++|||+|.||.|+|+.+|.+| ||++|++|+++++.|
T Consensus 2 ~m~i~Vk~~~-g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~-~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 2 SMWIQVRTMD-GRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY-EVRLNDTIQLLVRQS 78 (78)
T ss_dssp CEEEEEEETT-SSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTT-TCCTTCEEEEEECCC
T ss_pred cEEEEEEECC-CCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEeCC
Confidence 5899999988 8885 999 9999999999999999999999999999999999999999999 999999999998754
No 11
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=6e-18 Score=130.82 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=71.1
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCee-cCCCCCcccccCCCCCCEEEEEec
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKL-LSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKi-LkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
.-|+|+||+.. |+.+.++|++++||++||++|++++|||+++|||+|.||+ |+|+.+|++| ||++|++|+++++
T Consensus 9 ~~~~i~vk~l~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y-~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLN-GSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC-QIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHH-TCCTTSCEEEEEC
T ss_pred CceEEEEEecC-CcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHc-CCCCCCEEEEEEc
Confidence 35999999998 9999999999999999999999999999999999999999 9999999999 9999999999875
No 12
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=4.9e-18 Score=137.33 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=71.0
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
...+|+|+||+.. |+.+.|+|.+++||++||++|++++|||+++|||+|.||+|+|..||++| ||++|++|++..
T Consensus 25 ~~~mm~I~VKtl~-Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dy-gI~~gstlhL~~ 99 (100)
T 1uh6_A 25 AATMIEVVCNDRL-GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDY-EIHDGMNLELYY 99 (100)
T ss_dssp CCCEEEEEEECSS-SSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHH-TCCTTEEEEEEC
T ss_pred CCCeEEEEEECCC-CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHc-CCCCCCEEEEEe
Confidence 3457999999998 89999999999999999999999999999999999999999999999999 999999999864
No 13
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.9e-18 Score=135.61 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=70.0
Q ss_pred eEEEEEEecCCCceEEEEEc--cCchHHHHHHHH-HHHhCCCCCceEEEEcCeecCCCCCcccccCC-CCCCEEEEEecC
Q psy7993 205 EIALKLRLSNTCQDVRMKVF--TQETVAMIKKRL-QSLEGIETSKQRWYYGGKLLSDKMKISDIQNL-ASGFVIQVIINN 280 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~--~tdTV~~LK~kI-~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgI-q~G~vI~vmV~k 280 (300)
+|+|+||+.+ |+.+.|+|+ +++||++||++| ++++|+|+++|||||.||+|+|..+|++| +| ++|.+|+|++++
T Consensus 1 mmqI~VKtl~-g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 1 MVHLTLKKIQ-APKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDL-KVTPANSTITVMIKP 78 (87)
T ss_dssp CCEEEEEECS-SSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHH-CCCGGGCEEEEEECC
T ss_pred CEEEEEEcCC-CCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHc-CCCCCCCEEEEEcCC
Confidence 4899999998 998888766 999999999999 99999999999999999999999999999 99 699999999976
Q ss_pred C
Q psy7993 281 L 281 (300)
Q Consensus 281 p 281 (300)
.
T Consensus 79 ~ 79 (87)
T 2lxa_A 79 N 79 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=1.2e-17 Score=129.45 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=71.9
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
...|+|+||+.+ |+.+.|+|.+++||++||++|+++.|||+++|||+|.||.|+|+.+|.+| ||++|++|+++++
T Consensus 15 ~~~m~i~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~r 89 (91)
T 3v6c_B 15 RGSMQIFVNTLT-GTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 89 (91)
T ss_dssp CCSEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGG-TCCTTCEEEEECC
T ss_pred CCeEEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHC-CCCCCCEEEEEEe
Confidence 457999999987 99999999999999999999999999999999999999999999999999 9999999999875
No 15
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.74 E-value=1.6e-17 Score=126.40 Aligned_cols=78 Identities=23% Similarity=0.469 Sum_probs=73.3
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
+...|+|+||..+ |+.+.|+|.+++||.+||++|+++.|+|+++|||+|.||.|+|+.+|.+| +|++|++|+++++..
T Consensus 9 ~~~~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 9 SGGSMLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLRLR 86 (88)
T ss_dssp CCCCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGG-TCCTTCEEEECCCCC
T ss_pred CCCcEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeCC
Confidence 3467999999987 99999999999999999999999999999999999999999999999999 999999999988643
No 16
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.73 E-value=1.1e-17 Score=125.50 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=71.9
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
.|+|+||+.+ |+.+.++|.+++||+.||++|++++|||+++|||+|.||.|+|+.||++| +|++|++|+++++..
T Consensus 3 ~m~i~vk~~~-g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~-~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 3 YIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEEECTT-CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHH-TCCTTEEEEEEECCC
T ss_pred eEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHc-CCCCCCEEEEEEecc
Confidence 5899999988 99999999999999999999999999999999999999999999999999 999999999998754
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=127.28 Aligned_cols=73 Identities=25% Similarity=0.380 Sum_probs=69.8
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
..|+|+||..+ |+.+.++|.+++||++||++|+++.|+|+++|||+|.||+|+|+.+|.+| || +|++||++++
T Consensus 16 ~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i-~g~~i~lv~R 88 (88)
T 4eew_A 16 DSLEVLVKTLD-SQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY-NV-GGKVIHLVER 88 (88)
T ss_dssp CEEEEEEEETT-SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TC-TTEEEEEEEC
T ss_pred CeEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHc-CC-CCcEEEEEEC
Confidence 57999999998 99999999999999999999999999999999999999999999999999 99 8999998764
No 18
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.73 E-value=1.1e-17 Score=129.48 Aligned_cols=76 Identities=24% Similarity=0.483 Sum_probs=71.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
|+|+||+.+ |+.+.|+|++++||++||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++|+++++...+
T Consensus 1 M~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~l~l~~rl~Gg 76 (88)
T 4fbj_B 1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLALRGG 76 (88)
T ss_dssp CEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECBCC--
T ss_pred CEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEECCCC
Confidence 689999987 99999999999999999999999999999999999999999999999999 99999999999876544
No 19
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=3e-17 Score=130.99 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=78.0
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+||... |+ +.|+|.+++||.+||++|+++.||++++|||+|.||+|+|+.+|.+| +|++|++|||+++.+..
T Consensus 16 ~~m~I~Vk~~~-g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPK-DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSS-CE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHH-TCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCC-Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEEcCCCC
Confidence 57999999986 65 89999999999999999999999999999999999999999999999 99999999999988777
Q ss_pred CCCCCCcccC
Q psy7993 284 PKLVPPVESM 293 (300)
Q Consensus 284 p~~~~~~~~~ 293 (300)
+.+.++..++
T Consensus 93 ~~~~~~~~~~ 102 (106)
T 1wx7_A 93 AMGNECPASG 102 (106)
T ss_dssp SCCCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 6655544443
No 20
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=123.96 Aligned_cols=75 Identities=17% Similarity=0.347 Sum_probs=71.4
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
..|+|+||... |+.+.++|.+++||++||++|+++.|+|+++|||+|.||.|+|+.+|.+| ||++|++|+++++.
T Consensus 6 ~~m~i~vk~~~-g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 6 SGMQLTVKALQ-GRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY-SIGPNSKLNLVVKP 80 (81)
T ss_dssp SSEEEEEEETT-SCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGG-TCCSSBCCEEECCC
T ss_pred CcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeC
Confidence 46999999887 89999999999999999999999999999999999999999999999999 99999999998864
No 21
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.4e-17 Score=134.60 Aligned_cols=81 Identities=9% Similarity=0.026 Sum_probs=71.7
Q ss_pred ceEEEEEEecC-C--CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 204 QEIALKLRLSN-T--CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~-~--Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
...+|.||++. . ++.+.|+|.+++||++||++|++++|||+++|||||.||+|+|..||++| ||++|++|+||+-+
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y-~I~~gsti~vl~lr 92 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQ-GVAHNVKAMVLELK 92 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHH-TCCSSEEEEEECCC
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHc-CCCCCCEEEEEEEC
Confidence 35578888775 1 57999999999999999999999999999999999999999999999999 99999999888766
Q ss_pred CCCCC
Q psy7993 281 LAGPK 285 (300)
Q Consensus 281 p~~p~ 285 (300)
...++
T Consensus 93 g~~~~ 97 (100)
T 1wju_A 93 QSSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCcc
Confidence 55443
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=129.24 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=71.5
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+||+.+ |+.+.++|.+++||++||++|+++.|||+++|||+|.||+|+|+.+|.+| ||++|++|+++++...+
T Consensus 3 ~~m~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETT-SCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHH-HCSTTCEEEEEEC----
T ss_pred ccEEEEEECCC-CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEcCCC
Confidence 36999999998 89999999999999999999999999999999999999999999999999 99999999999887654
Q ss_pred C
Q psy7993 284 P 284 (300)
Q Consensus 284 p 284 (300)
+
T Consensus 81 ~ 81 (88)
T 2hj8_A 81 L 81 (88)
T ss_dssp -
T ss_pred c
Confidence 4
No 23
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.72 E-value=2.2e-17 Score=128.21 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=72.1
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAGP 284 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~p 284 (300)
|+|+||+.+ |+.+.|+|.+++||.+||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++|+++++...+.
T Consensus 2 m~i~vk~~~-g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 2 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp CEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCCC--
T ss_pred cEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEcCCCC
Confidence 789999998 99999999999999999999999999999999999999999999999999 999999999999875543
No 24
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.72 E-value=2.1e-17 Score=130.37 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=73.6
Q ss_pred CCCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 201 VGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 201 ~~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
.....|+|+||+.+ |+.+.++|.+++||+.||++|+++.|||+++|||+|.||.|+|..||.+| +|++|++|+++++.
T Consensus 17 ~~~~~m~I~Vk~~~-g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy-~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 17 KEGEYIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQEQ 94 (97)
T ss_dssp --CCEEEEEEECTT-CCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHH-TCCTTCEEEEEESS
T ss_pred CCCCcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHC-CCCCCCEEEEEEec
Confidence 34568999999998 99999999999999999999999999999999999999999999999999 99999999999875
Q ss_pred C
Q psy7993 281 L 281 (300)
Q Consensus 281 p 281 (300)
.
T Consensus 95 ~ 95 (97)
T 1wyw_B 95 T 95 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.72 E-value=2.9e-17 Score=120.74 Aligned_cols=74 Identities=23% Similarity=0.464 Sum_probs=70.4
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
|+|+||..+ |+.+.++|.+++||++||++|+++.|+|+++|||+|.||.|+|+.+|.+| ||++|++|+++++..
T Consensus 1 M~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLT-GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCC
T ss_pred CEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCC
Confidence 689999987 89999999999999999999999999999999999999999999999999 999999999988653
No 26
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=5e-17 Score=124.54 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=72.9
Q ss_pred ceEEEEEEecCCC-ceEEE-EEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 204 QEIALKLRLSNTC-QDVRM-KVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 204 ~~I~VkVRlS~~G-kdv~V-eV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
..|+|+||+.. | +.+.| +|.+++||.+||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++||++++..
T Consensus 6 ~~m~i~Vk~~~-g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 6 SGMWIQVRTID-GSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY-DVGLNDIIQLLVRPD 83 (89)
T ss_dssp SCEEEEEEETT-CSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHH-TCCTTCEEEEEECCC
T ss_pred CcEEEEEEECC-CCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEeCC
Confidence 56999999988 8 79999 59999999999999999999999999999999999999999999 999999999998765
Q ss_pred CC
Q psy7993 282 AG 283 (300)
Q Consensus 282 ~~ 283 (300)
.+
T Consensus 84 gG 85 (89)
T 1wy8_A 84 SG 85 (89)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.9e-17 Score=122.38 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=72.4
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
..|+|+||..+ |+.+.|+|.+++||.+||++|+++.|+|+++|||+|.||.|+|+.+|.+| +|++|++|+++++...
T Consensus 2 s~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 2 SHMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKWSTLFLLLRLRG 78 (85)
T ss_dssp -CEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGG-TCCTTCEEEEECCCCC
T ss_pred CeEEEEEEcCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEECcC
Confidence 46999999997 99999999999999999999999999999999999999999999999999 9999999999987543
No 28
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.71 E-value=5.7e-17 Score=120.19 Aligned_cols=73 Identities=19% Similarity=0.425 Sum_probs=68.7
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
.|+|+||. . |+.+.++|.+++||++||++|++..|+|+++|||+|.||.|+|+.+|.+| ||++|++|+++.++
T Consensus 4 ~m~i~vk~-~-g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKS-G-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEE-T-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECC
T ss_pred EEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEEcC
Confidence 38899998 5 89999999999999999999999999999999999999999999999999 99999999987654
No 29
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=3.8e-17 Score=129.35 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=76.8
Q ss_pred CceEEEEEEecCCCceE-EEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 203 GQEIALKLRLSNTCQDV-RMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv-~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
..+|+|+||. . |+.+ .|+|.+++||.+||++|++++|||+++|||+|.||+|+|. +|.+| ||++|++|++|.++.
T Consensus 5 ~~~m~i~Vk~-~-g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~-~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVKW-G-KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI-KMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEEE-T-TEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSC-CCCSSCEEECCCCCC
T ss_pred CcEEEEEEEE-C-CEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHC-CCCCCCEEEEEecch
Confidence 3579999996 3 7999 6999999999999999999999999999999999999999 99999 999999999988765
Q ss_pred CCCCCCCCcccCCCccc
Q psy7993 282 AGPKLVPPVESMKSVTS 298 (300)
Q Consensus 282 ~~p~~~~~~~~~~~~~~ 298 (300)
. .+.+|.+..+.+.|
T Consensus 81 ~--~~~~p~~~~~~~~~ 95 (96)
T 1wgg_A 81 A--LPEEPSAKTSGPSS 95 (96)
T ss_dssp C--CCCCCCCSSSCCCC
T ss_pred h--cCCCCCcCCCCCCC
Confidence 3 33445555555443
No 30
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=3.9e-17 Score=127.42 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=75.3
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCC-CCcccccCCCCCCEEEEEecCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDK-MKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~-~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
..|+|+||... |+.+.++|.+++||++||++|+++. +++|||+|.||+|+|+ .+|.+| ||++|++||+++++|.
T Consensus 6 ~~m~i~Vk~~~-g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y-~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLN-DTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL-NITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTT-TCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHc-CCCCCCEEEEEECCCC
Confidence 46999999987 8999999999999999999999987 7999999999999999 999999 9999999999999887
Q ss_pred CCCCCCCc
Q psy7993 283 GPKLVPPV 290 (300)
Q Consensus 283 ~p~~~~~~ 290 (300)
.+.+.|+.
T Consensus 81 ~~~~~~~~ 88 (95)
T 1wia_A 81 AAVSGPSA 88 (95)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 77666654
No 31
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.7e-17 Score=124.08 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=71.4
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
..|+|+||..+ |+.+.++|.+++||.+||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++|+++++..-
T Consensus 2 s~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 2 SHMRIVVKTLM-GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIHNHSALYLLLKLRG 78 (85)
T ss_dssp --CEEEEECGG-GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTT-TCCTTCEEEEEECCC-
T ss_pred CeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEeccC
Confidence 36899999987 89999999999999999999999999999999999999999999999999 9999999999997654
No 32
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.3e-17 Score=129.07 Aligned_cols=78 Identities=22% Similarity=0.415 Sum_probs=72.0
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
....|+|+||..+ |+.+.|+|.+++||++||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++|+++++..
T Consensus 19 ~~~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 19 QGRPMQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLR 96 (98)
T ss_dssp ---CCEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGG-TCCTTEEEEEECBCS
T ss_pred CCCeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEecC
Confidence 4467999999987 99999999999999999999999999999999999999999999999999 999999999988653
No 33
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.71 E-value=6.1e-17 Score=118.97 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=70.5
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
|+|+||..+ |+.+.++|.+++||++||++|+++.|+|+++|||+|.||.|+|+.+|.+| ||++|++|+++++..
T Consensus 1 M~i~vk~~~-g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGG-TCCTTCEEEEEECCC
T ss_pred CEEEEEcCC-CCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeCC
Confidence 689999987 89999999999999999999999999999999999999999999999999 999999999988754
No 34
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=5.7e-17 Score=128.98 Aligned_cols=86 Identities=10% Similarity=0.155 Sum_probs=75.2
Q ss_pred ceEEEEEEecCCC---ceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCC-CCcccccCCCCCCEEEEEec
Q psy7993 204 QEIALKLRLSNTC---QDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDK-MKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 204 ~~I~VkVRlS~~G---kdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~-~tL~dyqgIq~G~vI~vmV~ 279 (300)
..|+|+||+...+ +.+.|+|.+++||++||++|++++|||+++|||+|.||+|+|+ .+|.+| +|++|++|+++++
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~y-gI~~g~~l~l~~~ 84 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSY-GLKDGDMVVLLQK 84 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHH-TCCTTEEEEECBC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHC-CCCCCCEEEEEEC
Confidence 4599999987523 7999999999999999999999999999999999999999987 699999 9999999999887
Q ss_pred CCCCCCCCCCc
Q psy7993 280 NLAGPKLVPPV 290 (300)
Q Consensus 280 kp~~p~~~~~~ 290 (300)
...+|.+.|+.
T Consensus 85 ~~gg~~~~~~~ 95 (102)
T 1v5o_A 85 DNVGLRTPGRT 95 (102)
T ss_dssp CCCCCSSCCCC
T ss_pred CCCCCCCCCCC
Confidence 76655444444
No 35
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=7e-17 Score=122.98 Aligned_cols=77 Identities=9% Similarity=0.175 Sum_probs=73.1
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
..|+|+||+.+ |+.+.++|.+++||.+||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++|+++++..-
T Consensus 6 ~~m~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~-~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 6 SGIQVFVKNPD-GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTLILSKKKGS 82 (87)
T ss_dssp SSEEEEEEETT-TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHH-TCCTTEEEEEEECSCC
T ss_pred CCEEEEEEcCC-CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHC-CCCCCCEEEEEEeccC
Confidence 56999999988 89999999999999999999999999999999999999999999999999 9999999999987654
No 36
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=5.4e-17 Score=127.87 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=73.3
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCC-CCcccccCCCCCCEEEEEecCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDK-MKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~-~tL~dyqgIq~G~vI~vmV~kp 281 (300)
...|+|+||... | .+.|+|.+++||++||++|++++|||+++|||+|.||+|+|+ .+|.+| ||++|++|+++++.+
T Consensus 13 ~~~~~I~Vk~~~-~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~y-gI~~gstl~lv~r~~ 89 (94)
T 2kan_A 13 VRKIHVTVKFPS-K-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY-GITEFSEIVVFLKSI 89 (94)
T ss_dssp SCCEEEEEECSS-C-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHH-TCCTTEEEEEEECCC
T ss_pred CCCEEEEEEcCC-c-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHC-CCCCCCEEEEEEeCC
Confidence 356999999986 6 899999999999999999999999999999999999999999 999999 999999999999876
Q ss_pred CCC
Q psy7993 282 AGP 284 (300)
Q Consensus 282 ~~p 284 (300)
.++
T Consensus 90 gg~ 92 (94)
T 2kan_A 90 NRA 92 (94)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 37
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.5e-17 Score=127.05 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=74.4
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+||.. |+.+.++|.+++||.+||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++||++++...+
T Consensus 16 ~~m~i~Vk~~--g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 16 RIIRVSVKTP--QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CEEEEEEECS--SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHH-TCCTTEEEECCBCCSSC
T ss_pred CcEEEEEEEC--CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHC-CCCCCCEEEEEEeCCCC
Confidence 5799999987 79999999999999999999999999999999999999999999999999 99999999998887665
Q ss_pred CCC
Q psy7993 284 PKL 286 (300)
Q Consensus 284 p~~ 286 (300)
+.|
T Consensus 93 ~~~ 95 (96)
T 1wx8_A 93 PSS 95 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 38
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=127.63 Aligned_cols=78 Identities=15% Similarity=0.298 Sum_probs=73.5
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+||.. |+.+.|+|.+++||++||++|+++.|||+++|||+|.||+|+|+.+|.+| ||++|++|+++++.+..
T Consensus 24 ~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 24 KIMKVTVKTP--KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQH-GIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp CCEEEEEECS--SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGG-TCCTTCEEEEEECCSSC
T ss_pred CeEEEEEEeC--CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEEcCCCC
Confidence 5699999987 78999999999999999999999999999999999999999999999999 99999999999987765
Q ss_pred C
Q psy7993 284 P 284 (300)
Q Consensus 284 p 284 (300)
|
T Consensus 101 ~ 101 (101)
T 2klc_A 101 P 101 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.70 E-value=1.6e-16 Score=128.54 Aligned_cols=76 Identities=21% Similarity=0.383 Sum_probs=72.5
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
..|+|+||..+ |+.+.|+|.+++||++||++|+++.|||+++|||+|.||+|+|..+|.+| +|++|++|+++++..
T Consensus 34 ~~m~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 34 LAMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLR 109 (111)
T ss_dssp GCEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTT-TCCTTCEEEEEECCC
T ss_pred ccEEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEecC
Confidence 57999999987 99999999999999999999999999999999999999999999999999 999999999998753
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1e-16 Score=127.65 Aligned_cols=79 Identities=13% Similarity=0.241 Sum_probs=73.5
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+||... |+ +.++|.+++||++||++|+++.|||+++|||+|.||+|+|..+|.+| ||++|++|+++++.+.+
T Consensus 21 ~~m~I~Vk~~~-g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 21 HLIKVTVKTPK-DK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TEEEEEEECSS-CE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHH-TCCTTCEEEEEECCCCS
T ss_pred CeEEEEEEcCC-Cc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEcCCCC
Confidence 57999999987 65 89999999999999999999999999999999999999999999999 99999999999987766
Q ss_pred CC
Q psy7993 284 PK 285 (300)
Q Consensus 284 p~ 285 (300)
|.
T Consensus 98 p~ 99 (100)
T 1yqb_A 98 AM 99 (100)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 41
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=9.9e-17 Score=124.10 Aligned_cols=76 Identities=21% Similarity=0.372 Sum_probs=69.5
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
-|+|+||+.+ |+.+.++|.+++||++||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++|+++++.+.
T Consensus 9 ~~~i~v~~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 9 GLQLFIKTLT-GKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG 84 (88)
T ss_dssp -CEEEEEETT-SCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGG-TCCTTCEEEEEC----
T ss_pred ceEEEEEeCC-CCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCCC
Confidence 4899999998 99999999999999999999999999999999999999999999999999 9999999999887543
No 42
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=2.2e-16 Score=130.42 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=72.8
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHH------HhCC--CCCceEEEEcCeecCCCCCcccccCCCCC--CE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQS------LEGI--ETSKQRWYYGGKLLSDKMKISDIQNLASG--FV 273 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e------~eGI--p~~qQRLiy~GKiLkD~~tL~dyqgIq~G--~v 273 (300)
+.|+|+||+.+ |+.+.|+|++++||++||++|++ ++|+ |+++|||||.||+|+|..||++| +|+.+ .|
T Consensus 15 ~~m~I~vKtl~-G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y-~I~~~~~~t 92 (116)
T 1wgh_A 15 DMINLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL-KLPFGKTTV 92 (116)
T ss_dssp SSEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTT-TCCSSCEEE
T ss_pred CeEEEEEEeCC-CCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHc-CCCCCCceE
Confidence 46999999998 89999999999999999999999 6786 58999999999999999999999 99877 56
Q ss_pred EEEEecCCCCCCCCCCccc
Q psy7993 274 IQVIINNLAGPKLVPPVES 292 (300)
Q Consensus 274 I~vmV~kp~~p~~~~~~~~ 292 (300)
||++++. ..|.++...+.
T Consensus 93 lhLvlr~-~~~~~~~~~~~ 110 (116)
T 1wgh_A 93 MHLVARE-TLPEPNSQGQR 110 (116)
T ss_dssp EEEEECS-SCSSSCCSSCC
T ss_pred EEEEccC-CCCCCCccccc
Confidence 8876644 44445544433
No 43
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=1.8e-16 Score=124.27 Aligned_cols=76 Identities=22% Similarity=0.421 Sum_probs=72.1
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
|+|+||+.+ |+.+.++|.+++||++||++|+++.|||+++|||+|.||.|+|+.+|.+| ||++|++|+++++.+.+
T Consensus 1 M~I~Vk~~~-g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~gG 76 (98)
T 1yx5_B 1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 76 (98)
T ss_dssp CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCCCC
T ss_pred CEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEeCCCC
Confidence 689999987 89999999999999999999999999999999999999999999999999 99999999999887644
No 44
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=1.6e-16 Score=133.28 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=69.5
Q ss_pred ceEEEEEEecCCCceE-EEEEccCchHHHHHHHH-----HHHhCCCC--CceEEEEcCeecCCCCCcccccCCCCC----
Q psy7993 204 QEIALKLRLSNTCQDV-RMKVFTQETVAMIKKRL-----QSLEGIET--SKQRWYYGGKLLSDKMKISDIQNLASG---- 271 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv-~VeV~~tdTV~~LK~kI-----~e~eGIp~--~qQRLiy~GKiLkD~~tL~dyqgIq~G---- 271 (300)
+.|.|+||+.+ |+++ .+++++++||+.||++| ++++|||+ ++|||||+||+|+|..||++| +|+.|
T Consensus 15 ~~~~i~~kt~~-G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy-~I~~~~~~~ 92 (126)
T 1se9_A 15 NQLEIKFRLTD-GSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDY-RSPVSNLAG 92 (126)
T ss_dssp CCEEEEEEETT-SCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGG-SCCTTSCTT
T ss_pred ccEEEEEEECC-CCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHc-CCCcCCccC
Confidence 68999999999 9999 69999999999999999 56778996 799999999999999999999 99998
Q ss_pred --CEEEEEecCCC
Q psy7993 272 --FVIQVIINNLA 282 (300)
Q Consensus 272 --~vI~vmV~kp~ 282 (300)
.|+|++++-+.
T Consensus 93 ~v~tmhlVlrl~g 105 (126)
T 1se9_A 93 AVTTMHVIIQAPV 105 (126)
T ss_dssp CCEEEEEEECCCS
T ss_pred CcEEEEEEeccCC
Confidence 67888775543
No 45
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=131.35 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=70.5
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHH------HhCCC--CCceEEEEcCeecCCCCCcccccCCCCCC-
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQS------LEGIE--TSKQRWYYGGKLLSDKMKISDIQNLASGF- 272 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e------~eGIp--~~qQRLiy~GKiLkD~~tL~dyqgIq~G~- 272 (300)
....|.|+||+.+ |+.+.|+|++++||++||++|++ ++|+| +++|||||.||+|+|..||++| +|+.|.
T Consensus 14 ~~~~m~I~vktl~-G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y-~I~~~~~ 91 (125)
T 2gow_A 14 PADMINLRLILVS-GKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL-KLPFGKT 91 (125)
T ss_dssp CTTCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGG-CCCTTSE
T ss_pred CCCeEEEEEEeCC-CCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHc-CCCCCCc
Confidence 3567999999998 89999999999999999999999 78985 7999999999999999999999 999887
Q ss_pred -EEEEEecCC
Q psy7993 273 -VIQVIINNL 281 (300)
Q Consensus 273 -vI~vmV~kp 281 (300)
|||++++.+
T Consensus 92 ~tlhlv~r~~ 101 (125)
T 2gow_A 92 TVMHLVARET 101 (125)
T ss_dssp EEEEEEECSC
T ss_pred eEEEEEecCC
Confidence 678777654
No 46
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=131.08 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=72.7
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
+..++|+|++...+..++|++.++.||++||.+|+++.++|+++|||+|+||+|+|+.||.+| ||++|++||+.++...
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~-gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQH-GVKPQEIVQVEIFSTN 91 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHH-SCCSSCEEEEEEEESC
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHc-CCCCCCEEEEEEecCC
Confidence 356999999665478999999999999999999999999999999999999999999999999 9999999999887733
No 47
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.7e-17 Score=129.92 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=68.4
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
..|+|+||. . |+.+.|+|++++||++||++|+++.|+|+++|||+|.||.|+|+.+|.+| ||++|++|+++++.|
T Consensus 27 m~i~I~Vk~-~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~g~tI~lv~~~P 101 (101)
T 3m63_B 27 MSLNIHIKS-G-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVKSQP 101 (101)
T ss_dssp --CCEEEEC-S-SCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTT-TCCTTEEEEECCCC-
T ss_pred cEEEEEEEE-C-CEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHC-CCCCCCEEEEEeCCC
Confidence 357888886 4 89999999999999999999999999999999999999999999999999 999999999988765
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=5.2e-16 Score=128.63 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=70.3
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+||.. |+.+.|+|.+++||.+||++|+++.|||+++|||+|.||+|+|+.+|.+| ||++|++|+++++...+
T Consensus 31 ~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 31 KIIKVTVKTP--KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH-GIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCEEEEEECS--SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGT-TCSSSEEEEEEEC----
T ss_pred CcEEEEEEeC--CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEeccCCC
Confidence 5699999987 78999999999999999999999999999999999999999999999999 99999999999887654
Q ss_pred C
Q psy7993 284 P 284 (300)
Q Consensus 284 p 284 (300)
+
T Consensus 108 ~ 108 (125)
T 1j8c_A 108 S 108 (125)
T ss_dssp -
T ss_pred C
Confidence 4
No 49
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=3.7e-16 Score=125.40 Aligned_cols=79 Identities=14% Similarity=0.298 Sum_probs=71.0
Q ss_pred ceEEEEEEecCCC---ceEEEEEc--------c-CchHHHHHHHHHHHh--CCCCCc-eEEEEcCeecCCCCCcccccCC
Q psy7993 204 QEIALKLRLSNTC---QDVRMKVF--------T-QETVAMIKKRLQSLE--GIETSK-QRWYYGGKLLSDKMKISDIQNL 268 (300)
Q Consensus 204 ~~I~VkVRlS~~G---kdv~VeV~--------~-tdTV~~LK~kI~e~e--GIp~~q-QRLiy~GKiLkD~~tL~dyqgI 268 (300)
..|+|+||+.. + +.+.|+|. + ++||++||++|++++ |+|+++ |||+|.||+|+|..+|.+| +|
T Consensus 11 ~~~~i~Vk~~~-~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y-~i 88 (107)
T 1x1m_A 11 SDWHLAVKLAD-QPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY-GI 88 (107)
T ss_dssp CSCCEEEEETT-CTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH-TC
T ss_pred CceEEEEEeCC-CCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc-CC
Confidence 35899999987 7 78999954 4 499999999999999 999999 9999999999999999999 99
Q ss_pred CCCCEEEEEecCCCCC
Q psy7993 269 ASGFVIQVIINNLAGP 284 (300)
Q Consensus 269 q~G~vI~vmV~kp~~p 284 (300)
++|++||++++.+..|
T Consensus 89 ~~g~~i~lv~~~~~~~ 104 (107)
T 1x1m_A 89 QPGSTVHVLRKSWSGP 104 (107)
T ss_dssp CTTCEEEEEESSCCSS
T ss_pred CCCCEEEEEeCCCCCC
Confidence 9999999999776543
No 50
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=7e-16 Score=119.62 Aligned_cols=78 Identities=19% Similarity=0.346 Sum_probs=70.4
Q ss_pred ceEEEEEEecCCCceEEEEEccC-----chHHHHHHHHHHHhCCCCCceEEEEcCeecCC-CCCcccccCCCCCCEEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQ-----ETVAMIKKRLQSLEGIETSKQRWYYGGKLLSD-KMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~t-----dTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD-~~tL~dyqgIq~G~vI~vm 277 (300)
.+|+|+||.. |+.+.|+|.+. .||.+||++|+++.|||+++|||+|.||.|+| ..+|.+| +|++|++|+++
T Consensus 6 ~~~~v~Vk~~--~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~-~i~~g~~i~l~ 82 (92)
T 1wxv_A 6 SGLTVTVTHS--NEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSAL-GIQDGCRVMLI 82 (92)
T ss_dssp SSEEEEEECS--SSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHH-TCCSSEEEEEE
T ss_pred CeEEEEEEEC--CEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHC-CCCCCCEEEEE
Confidence 4699999984 78999999995 99999999999999999999999999999998 6689999 99999999998
Q ss_pred ecCCCCC
Q psy7993 278 INNLAGP 284 (300)
Q Consensus 278 V~kp~~p 284 (300)
.+++.+|
T Consensus 83 ~~~~~~~ 89 (92)
T 1wxv_A 83 GKKNSGP 89 (92)
T ss_dssp SCCSCSC
T ss_pred ecCCCCC
Confidence 8765543
No 51
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.3e-16 Score=125.81 Aligned_cols=78 Identities=23% Similarity=0.404 Sum_probs=73.9
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
.+++|+||+.+ |+.+.++|.+++||++||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++|+++++.+.+
T Consensus 8 ~~~~i~vk~l~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 8 GEFQIFAKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDY-NIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CCCEEEEEETT-CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTT-TCCSSCEEEEEECCCSS
T ss_pred CcEEEEEEeCC-CcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEcCCC
Confidence 36899999998 99999999999999999999999999999999999999999999999999 99999999999887544
No 52
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.45 E-value=1.3e-17 Score=123.86 Aligned_cols=73 Identities=12% Similarity=0.339 Sum_probs=69.6
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
|+|+||+.+ |+.+.++|.+++||++||++|++..|+|+++|||+|.||.|+|+.+|.+| ||++|++|+++++.
T Consensus 1 M~i~Vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 1 MIVFVRFNS-SYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNC-DLEQQSIVHIVQRP 73 (76)
Confidence 689999887 89999999999999999999999999999999999999999999999999 99999999998764
No 53
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=2.1e-16 Score=128.53 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCC---------------CceEEEEcCeecC-CCCCcccc
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIET---------------SKQRWYYGGKLLS-DKMKISDI 265 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~---------------~qQRLiy~GKiLk-D~~tL~dy 265 (300)
++..|+|+|++.+ |+.+.|+|.+++||++||++|++++|+|+ .+|||+|.||+|+ |..||.+|
T Consensus 4 ~~~~M~I~Vk~l~-g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 4 GSSGMTVRVCKMD-GEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCCSEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCCcEEEEEEecC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 4567999999998 99999999999999999999999999987 3679999999996 67999999
Q ss_pred cCCCCCCEEEEEecC
Q psy7993 266 QNLASGFVIQVIINN 280 (300)
Q Consensus 266 qgIq~G~vI~vmV~k 280 (300)
||++|++||++.+-
T Consensus 83 -gI~~g~~l~lv~~l 96 (105)
T 1v2y_A 83 -GIRNRDEVSFIKKL 96 (105)
T ss_dssp -TCCSSEEEEEEECS
T ss_pred -CCCCCCEEEEEehh
Confidence 99999999988765
No 54
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=5.6e-16 Score=120.58 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=69.8
Q ss_pred ceEEEEEEecCCCc--eEEEEEccCchHHHHHHHHHHHh--CCCCCceEEEEcCeecCCCCCccccc-CCCCCCEEEEEe
Q psy7993 204 QEIALKLRLSNTCQ--DVRMKVFTQETVAMIKKRLQSLE--GIETSKQRWYYGGKLLSDKMKISDIQ-NLASGFVIQVII 278 (300)
Q Consensus 204 ~~I~VkVRlS~~Gk--dv~VeV~~tdTV~~LK~kI~e~e--GIp~~qQRLiy~GKiLkD~~tL~dyq-gIq~G~vI~vmV 278 (300)
..|+|+||+.+ ++ ++.|+|.+++||++||++|+++. |+|+++|||||.||+|+|+.+|.+|- +|++|++||+++
T Consensus 6 ~~m~i~Vk~~~-~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 6 SGVTLLVKSPN-QRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CCCEEEEECSS-SSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred cEEEEEEEeCC-CCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 45899999987 77 78888889999999999999998 99999999999999999999999962 689999999877
Q ss_pred cCCC
Q psy7993 279 NNLA 282 (300)
Q Consensus 279 ~kp~ 282 (300)
+...
T Consensus 85 ~~~g 88 (93)
T 1wgd_A 85 NVKS 88 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 55
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.64 E-value=9.8e-16 Score=128.82 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=72.8
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
...|+|+||+.+ |+.+.++|.+++||++||++|++++|+|+++|||+|.||.|+|..+|.+| ||++|++||++++-.
T Consensus 79 ~~~m~i~vk~~~-g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y-~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 79 DEPLSILVRNNK-GRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLRLR 155 (159)
T ss_dssp CCCEEEEEECTT-SCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCC
T ss_pred CCcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHc-CCCCCCEEEEEEecC
Confidence 356999999988 99999999999999999999999999999999999999999999999999 999999999998653
No 56
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.64 E-value=9.6e-16 Score=124.91 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=68.4
Q ss_pred ceEEEEEEecCC-CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCC-CCCCEEEEEecC
Q psy7993 204 QEIALKLRLSNT-CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNL-ASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~~-Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgI-q~G~vI~vmV~k 280 (300)
-.|+|+|+.... +..+.|+|.+++||++||++|++++|||+++|||||+||+|+|+.||.+| || ++|++||+++-.
T Consensus 23 i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~y-gI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 23 IRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSH-GVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGG-TCCSTTCEEEEEECC
T ss_pred EEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHc-CCCCCCCEEEEEEEe
Confidence 357777777652 47999999999999999999999999999999999999999999999999 99 599999998743
No 57
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=6.1e-16 Score=121.10 Aligned_cols=73 Identities=27% Similarity=0.274 Sum_probs=68.0
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
..|+|+||. |+.+.++|.+++||++||++|+++.|||+++|||+|.||.|+|+.+|.+| +|++|++|+++++.
T Consensus 18 ~~m~I~Vk~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y-~I~~gstI~lv~rl 90 (93)
T 2l7r_A 18 GSMQLFVRA---QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQC-GVEALTTLEVAGRM 90 (93)
T ss_dssp --CEEEEES---SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHH-TCCSSCEEEEECCC
T ss_pred CcEEEEEEC---CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEec
Confidence 468999996 78999999999999999999999999999999999999999999999999 99999999998764
No 58
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=6.8e-16 Score=124.24 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=72.7
Q ss_pred ceEEEEEEecC--CCceEEEEEcc-CchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 204 QEIALKLRLSN--TCQDVRMKVFT-QETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~--~Gkdv~VeV~~-tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
..|+|+||+.. +|+.+.++|.+ ++||.+||++|++..|||+++|||+|.||+|+|..+|.+| +|++|++|+++++.
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y-~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHY-NVGAGEILTLSLRE 104 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTT-TCSSSCEEEEECSS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEc
Confidence 46999999982 38999999998 9999999999999999999999999999999999999999 99999999999876
Q ss_pred CCC
Q psy7993 281 LAG 283 (300)
Q Consensus 281 p~~ 283 (300)
..+
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 59
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.63 E-value=1.7e-15 Score=122.10 Aligned_cols=77 Identities=21% Similarity=0.359 Sum_probs=72.7
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
...|+|+||..+ |+.+.++|.+++||++||++|+++.|+|+++|||+|.||.|+|+.+|.+| +|++|++|+++++..
T Consensus 33 ~~~m~I~Vk~~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~-gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 33 LLAMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLR 109 (111)
T ss_dssp SSCEEEEEECSS-SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTT-TCCTTCEEEEEECCC
T ss_pred CCeEEEEEEcCC-CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCC
Confidence 357999999987 89999999999999999999999999999999999999999999999999 999999999998653
No 60
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.63 E-value=5.1e-16 Score=128.90 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=64.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCC-------CCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLA-------SGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq-------~G~vI~vmV 278 (300)
|.|++|.. ...+.|+|.+++||++||++|++++|||+++|||||+||+|+|..||++| ||+ .+++||+.+
T Consensus 3 mfl~ir~~--ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy-~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 3 VFLMIRRH--KTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC-GFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEEB--TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHH-TCCTTTSBTTBCEEEEEEE
T ss_pred EEEEEecC--CEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHc-CcccccccCCCCCEEEEEe
Confidence 55566542 24699999999999999999999999999999999999999999999999 999 799999988
Q ss_pred c
Q psy7993 279 N 279 (300)
Q Consensus 279 ~ 279 (300)
+
T Consensus 80 r 80 (118)
T 2fnj_B 80 R 80 (118)
T ss_dssp B
T ss_pred c
Confidence 8
No 61
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.62 E-value=1.4e-15 Score=131.84 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=71.9
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
|+|+||+.+ |+.+.++|.+++||++||++|++++|+|+++|||+|.||+|+|+.+|.+| +|++|++||++++...+
T Consensus 1 MqI~Vk~~~-Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-~I~~gstI~Lvlrl~GG 76 (169)
T 3l0w_B 1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 76 (169)
T ss_dssp CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCCC-
T ss_pred CEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHc-CCCCCCEEEEEEEeccc
Confidence 689999998 99999999999999999999999999999999999999999999999999 99999999999876544
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=1.5e-15 Score=127.67 Aligned_cols=73 Identities=15% Similarity=0.331 Sum_probs=70.5
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE-E-cCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY-Y-GGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi-y-~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
|+|+||+.+ |+.+.++|++++||++||++|+++.|||+++|||+ | .||.|+|+.+|.+| ||++|++|+++++.
T Consensus 3 m~i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y-~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLA-GNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ-GLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETT-SCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG-TCCTTCEEEEEECC
T ss_pred eEEEEEECC-CCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc-CCCCCCEEEEEccC
Confidence 789999988 99999999999999999999999999999999999 9 89999999999999 99999999999974
No 63
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.62 E-value=8.4e-16 Score=119.67 Aligned_cols=75 Identities=17% Similarity=0.289 Sum_probs=69.8
Q ss_pred ceEEEEEEecCCCceEEE-EEccCchHHHHHHHHHHHhCCCCCceEEE---EcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 204 QEIALKLRLSNTCQDVRM-KVFTQETVAMIKKRLQSLEGIETSKQRWY---YGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~V-eV~~tdTV~~LK~kI~e~eGIp~~qQRLi---y~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
..|+|+||. . |+.+.| +|.+++||.+||++|++++|||+++|||+ |.||+|+|..+|.+| +|++|++|++|..
T Consensus 6 ~~m~i~Vk~-~-g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~-~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-G-GQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL-KLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-T-TEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH-TCCTTEEEEEECC
T ss_pred ceEEEEEEE-C-CEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc-CCCCCCEEEEEec
Confidence 468999996 4 899999 99999999999999999999999999999 999999999999999 9999999999875
Q ss_pred CC
Q psy7993 280 NL 281 (300)
Q Consensus 280 kp 281 (300)
..
T Consensus 83 ~~ 84 (90)
T 1v5t_A 83 RE 84 (90)
T ss_dssp CS
T ss_pred Cc
Confidence 44
No 64
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.62 E-value=7.4e-16 Score=128.06 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=65.8
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCC-------CCEEEEEec
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLAS-------GFVIQVIIN 279 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~-------G~vI~vmV~ 279 (300)
-|++|+-....++.++|.+++||.+||++|++++|||+++|||||+||+|+|..||++| ||+. +.+||++++
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy-~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGEC-GFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTT-TCCGGGSBTTBCEEEEEEEC
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHc-CCCcCcccCCCCCEEEEEEe
Confidence 45556555234899999999999999999999999999999999999999999999999 9999 999999987
Q ss_pred C
Q psy7993 280 N 280 (300)
Q Consensus 280 k 280 (300)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 5
No 65
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.61 E-value=2.1e-15 Score=122.30 Aligned_cols=78 Identities=23% Similarity=0.434 Sum_probs=72.0
Q ss_pred ceEEEEEEecC---------CCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEE
Q psy7993 204 QEIALKLRLSN---------TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVI 274 (300)
Q Consensus 204 ~~I~VkVRlS~---------~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI 274 (300)
..|+|+|+++. +|+.+.++|.+++||.+||++|+++.|||+++|||+|.||+|+|..+|.+| +|++|++|
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y-~i~~g~~i 102 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYY-NMASGAVI 102 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHH-TCCSSCEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHC-CCCCCCEE
Confidence 36899999874 378999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEecCCC
Q psy7993 275 QVIINNLA 282 (300)
Q Consensus 275 ~vmV~kp~ 282 (300)
|++++...
T Consensus 103 ~lv~rl~G 110 (115)
T 1we7_A 103 HLALKERS 110 (115)
T ss_dssp EEEECCCS
T ss_pred EEEEEcCC
Confidence 99887644
No 66
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.61 E-value=2.3e-15 Score=116.18 Aligned_cols=73 Identities=19% Similarity=0.366 Sum_probs=65.6
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
.+.+.+++ . |+.+.++|.+++||++||++|+++.|||+++|||+|.||+|+|+.+|.+| ||++|++|++++++
T Consensus 12 ~~~~~~~~-~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 12 TIKLTVKF-G-GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQS-DVGSGAKLMLMASQ 84 (85)
T ss_dssp CEEEEEEE-T-TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTT-TCCTTEEEEEECCC
T ss_pred cEEEEEEE-C-CEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHC-CCCCCCEEEEEEeC
Confidence 34444444 4 89999999999999999999999999999999999999999999999999 99999999988753
No 67
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=127.72 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=72.5
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
....|+|+||+.+ |+.+.|+|.+++||++||++|++++|||+++|||+|.||.|+|+.+|.+| ||++|++|+++++.+
T Consensus 17 ~~~~m~i~Vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~-~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 17 RGSHMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLR 94 (172)
T ss_dssp --CCEEEEEEETT-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGG-TCCTTCEEEEEECCC
T ss_pred CCCcEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHc-CCcccceeeeeeccc
Confidence 3456999999987 99999999999999999999999999999999999999999999999999 999999999997654
No 68
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.3e-15 Score=120.03 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=69.0
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
...|+|+||.. |+.+.|+|.+++||.+||++|+++.|||+++|||+|.||+|+| .+|.+| +|++|++|++|.++..
T Consensus 15 ~~~~~i~Vk~~--g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~-~i~~g~~i~lv~~~~~ 90 (95)
T 1v86_A 15 KELVDLKIIWN--KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREI-KVTSGAKIMVVGSTIS 90 (95)
T ss_dssp CCCEEEEEEET--TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHH-CCCTTEEEEECCSSCC
T ss_pred CceEEEEEEEC--CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHC-CCCCCCEEEEEecccc
Confidence 35699999853 7999999999999999999999999999999999999999954 599999 9999999999876644
Q ss_pred C
Q psy7993 283 G 283 (300)
Q Consensus 283 ~ 283 (300)
.
T Consensus 91 ~ 91 (95)
T 1v86_A 91 G 91 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 69
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=122.11 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=65.0
Q ss_pred CCceEEEEEEecCCCc--eEEEEEccCchHHHHHHHHHHH-hCCCC-CceEEEEcCeecCCCCCccccc-CCCCCCEEEE
Q psy7993 202 GGQEIALKLRLSNTCQ--DVRMKVFTQETVAMIKKRLQSL-EGIET-SKQRWYYGGKLLSDKMKISDIQ-NLASGFVIQV 276 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gk--dv~VeV~~tdTV~~LK~kI~e~-eGIp~-~qQRLiy~GKiLkD~~tL~dyq-gIq~G~vI~v 276 (300)
....|+|+||+.+ |+ ++.|+|.+++||++||++|+++ +|+|+ ++|||||.||+|+|..+|.+|. +|++|++||+
T Consensus 20 ~~~~m~I~VK~~~-g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPN-QKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTT-SSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCeEEEEEEcCC-CCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 3456999999987 76 7899999999999999999996 67765 9999999999999999999952 8999999997
Q ss_pred E
Q psy7993 277 I 277 (300)
Q Consensus 277 m 277 (300)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.59 E-value=3.1e-15 Score=132.70 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=73.5
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
-.|+|+||+.+ |+.+.|+|++++||.+||++|++++|||+++|||+|.||+|+|+.+|.+| +|++|++||++++...+
T Consensus 104 ~eMqI~VKtl~-Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 104 YGGQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGG-TCCTTCEEEECCCCCCC
T ss_pred cceeeeeecCC-CCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHC-CCCCCCEEEEEEEcCCC
Confidence 46999999998 99999999999999999999999999999999999999999999999999 99999999998875543
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.58 E-value=1.2e-14 Score=119.75 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=72.1
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
..|+|+||..+ |+.+.++|.+++||++||++|+++.|+|+++|||+|.||.|+|+.+|.+| ||++|++|+++++.+
T Consensus 75 ~~~~i~Vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 75 GGMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLR 150 (152)
T ss_dssp TCEEEEEEESS-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCC
T ss_pred cccceeeeecC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEecC
Confidence 35899999988 99999999999999999999999999999999999999999999999999 999999999998764
No 72
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.57 E-value=4.9e-15 Score=115.69 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=66.3
Q ss_pred EEEEEEecCC-CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEE-------cCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNT-CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYY-------GGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~-Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy-------~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
++|.|.-+.. .+.+++.+++++||++||+||+.++|||+++|||+| .||+|+|..+|.+| ||++|++|||+
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y-~i~~g~~ihlv 81 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYY-QCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGG-TCCTTCEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHC-CCCCCCEEEEE
Confidence 5566654432 466789999999999999999999999999999996 69999999999999 99999999998
Q ss_pred ecCCC
Q psy7993 278 INNLA 282 (300)
Q Consensus 278 V~kp~ 282 (300)
-..|.
T Consensus 82 d~~P~ 86 (86)
T 4b6w_A 82 DLQPS 86 (86)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 77663
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.57 E-value=9.7e-15 Score=120.23 Aligned_cols=75 Identities=21% Similarity=0.398 Sum_probs=70.8
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
|+|+||+.+ |+.+.++|.+++||++||++|+++.|+|+++|||+|.|+.|+|+.+|.+| ||++|++|+++.+.+.
T Consensus 1 M~i~vk~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~-~i~~~~~l~l~~~~~~ 75 (152)
T 3b08_A 1 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG 75 (152)
T ss_dssp CEEEEEETT-SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCTT
T ss_pred CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHh-ccCCCCeeEEEeeccc
Confidence 689999987 89999999999999999999999999999999999999999999999999 9999999999886543
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.57 E-value=2e-16 Score=130.66 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=0.0
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
|+|+||+.+ |+.+.|+|++++||++||++|++.+|||+++|||+|.|++|+|+.+|.+| ||++|++|+++++.+.+
T Consensus 1 M~I~Vk~~~-G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCC-CCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhh-ccCCCCEEEEEEEcCCC
Confidence 689999987 99999999999999999999999999999999999999999999999999 99999999999876554
No 75
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.57 E-value=7.5e-15 Score=125.50 Aligned_cols=75 Identities=21% Similarity=0.406 Sum_probs=70.5
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
+..++|+||..+ |+.+.++|.+++||.+||++|++++|||+++|||+|.||.|+|..+|.+| +|++|++||++++
T Consensus 94 ~gg~~i~Vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y-~i~~g~tl~l~~r 168 (172)
T 3u30_A 94 RGGMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 168 (172)
T ss_dssp CCCEEEEEEESS-CCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGG-TCCTTCEEEECC-
T ss_pred cccccceeeccc-CcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHh-CCCCCCEEEEEEe
Confidence 345889999987 99999999999999999999999999999999999999999999999999 9999999999875
No 76
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.55 E-value=7.3e-15 Score=141.77 Aligned_cols=77 Identities=21% Similarity=0.433 Sum_probs=71.6
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHH---HhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQS---LEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e---~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
..|+|+||+.+ |+.+.|+|.+++||.+||++|++ ++||++++|||||.||+|+|..+|.+| ||++|++|++||.+
T Consensus 6 ~~M~I~VKtl~-Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dy-gI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQ-QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETT-TEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTT-CCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCC-CCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHc-CCCCCCEEEEEEec
Confidence 56899999998 99999999999999999999999 578999999999999999999999999 99999999777777
Q ss_pred CC
Q psy7993 281 LA 282 (300)
Q Consensus 281 p~ 282 (300)
+.
T Consensus 84 ~~ 85 (368)
T 1oqy_A 84 TK 85 (368)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.55 E-value=2.3e-14 Score=113.89 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=65.3
Q ss_pred ceEEEEEEecCC-CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEc--Ce---e-cCCCCCcccccCCCCCCEEEE
Q psy7993 204 QEIALKLRLSNT-CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYG--GK---L-LSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 204 ~~I~VkVRlS~~-Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~--GK---i-LkD~~tL~dyqgIq~G~vI~v 276 (300)
..|+|+|+.+.. ++.++++|.+++||++||+||++++|||+++|||+|. || . ++|..+|.+| ||++|++|+|
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y-~i~~gstihl 92 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYY-ANSDGLRLHV 92 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHH-CCSSSCEEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHC-CcCCCCEEEE
Confidence 578999998762 2589999999999999999999999999999999998 55 4 4999999999 9999999997
Q ss_pred E
Q psy7993 277 I 277 (300)
Q Consensus 277 m 277 (300)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 4
No 78
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.52 E-value=9.2e-16 Score=131.65 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=0.0
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
|+|+||+.+ |+.+.|+|++++||++||++|++.+|||+++|||+|.|++|+|+.+|.+| +|++|++|+++++...+
T Consensus 1 MqI~VK~l~-G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLT-GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCC-CCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHc-CCCCCCEEEEEeeccCC
Confidence 689999987 99999999999999999999999999999999999999999999999999 99999999999876544
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=113.42 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=64.4
Q ss_pred ceEEEEEEecCCCceE--EE-EEccCchHHHHHHHHHHH-hCCCCCceEEEEc--CeecCCCCCcccccCCCCCCEEEE
Q psy7993 204 QEIALKLRLSNTCQDV--RM-KVFTQETVAMIKKRLQSL-EGIETSKQRWYYG--GKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv--~V-eV~~tdTV~~LK~kI~e~-eGIp~~qQRLiy~--GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
.+|+|+||..+ |+.+ .| +|.+++||++||++|+++ .||++++|||+|. ||+|+|..||++| ||++|++|++
T Consensus 9 ~~M~I~Vk~~~-g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y-~i~~~stl~~ 85 (88)
T 2dzj_A 9 KHYEVEILDAK-TREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKL-PVGTTATLYF 85 (88)
T ss_dssp CCEEEEEEESS-SCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTS-SCCSEEEEEE
T ss_pred EEEEEEEECCC-CCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHc-CCCCCCEEEE
Confidence 36999999998 6654 58 999999999999999995 8999999999977 9999999999999 9999999874
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.50 E-value=7.3e-14 Score=111.61 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=66.2
Q ss_pred ceEEEEEEecCC-CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCe---e----cCCCCCcccccCCCCCCEEE
Q psy7993 204 QEIALKLRLSNT-CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGK---L----LSDKMKISDIQNLASGFVIQ 275 (300)
Q Consensus 204 ~~I~VkVRlS~~-Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GK---i----LkD~~tL~dyqgIq~G~vI~ 275 (300)
..++|.|..+.. ++.++++|.+++||++||+||++++|||+++|||+|.|+ . ++|..+|.+| +|++|++|+
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y-~I~~g~~Ih 91 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFF-SPFDGFRLH 91 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHH-CCCSCCEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHC-CCCCCCEEE
Confidence 568899987652 358999999999999999999999999999999999984 3 5899999999 999999999
Q ss_pred EEec
Q psy7993 276 VIIN 279 (300)
Q Consensus 276 vmV~ 279 (300)
|+-.
T Consensus 92 lvd~ 95 (97)
T 2kj6_A 92 IIDL 95 (97)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8653
No 81
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.1e-14 Score=112.50 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=64.4
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEE--cCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYY--GGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy--~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
++.+++++ . |+.+.|+|++++||++||++|++++|||+++|||+| .|+ |+|..+|.+| +|+.|++||++.....
T Consensus 9 m~~~~vk~-~-Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~-~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 9 MLDFRVEY-R-DRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL-HLPKNNSLYVLTPDLP 84 (100)
T ss_dssp EEEEEEEC-S-SCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH-CCCSEEEEEECCSSSC
T ss_pred eEEEEEEe-C-CeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc-CCCCCCEEEEEecCCC
Confidence 45555555 4 899999999999999999999999999999999987 677 9999999999 9999999998664443
No 82
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=1.2e-13 Score=108.39 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=65.7
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC---ee----cCCCCCcccccCCCCCCEEEEE
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG---KL----LSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G---Ki----LkD~~tL~dyqgIq~G~vI~vm 277 (300)
.|+|+|+.+.....++++|.+++||++||++|++++|||+++|||+|.| +. |+|..+|.+| ||++|++|||+
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y-~i~~g~~l~v~ 85 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSY-PVDDGCRIHVI 85 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSS-SCCTTCEEEEB
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHC-CCCCCCEEEEE
Confidence 4888888764113799999999999999999999999999999999987 43 6899999999 99999999987
Q ss_pred ecCC
Q psy7993 278 INNL 281 (300)
Q Consensus 278 V~kp 281 (300)
...|
T Consensus 86 d~~P 89 (95)
T 1v6e_A 86 DHSG 89 (95)
T ss_dssp CCSC
T ss_pred ECCc
Confidence 6443
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.47 E-value=1.5e-13 Score=130.03 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=71.8
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEec
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
....|+|+||+++ |+.+.|+|.+++||++||++|+++.|||+++|||+|.||+|+|+.+|.+| +|++|++|+|+++
T Consensus 230 ~~~~MqI~VKtl~-Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdy-gI~~gstL~LvlR 305 (307)
T 3ai5_A 230 ITGSMQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLR 305 (307)
T ss_dssp SCCCEEEEEECTT-SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGG-TCCTTCEEEEEC-
T ss_pred CCCeEEEEEEeCC-CCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHc-CCCCCCEEEEEEe
Confidence 4568999999987 89999999999999999999999999999999999999999999999999 9999999999875
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.45 E-value=1.4e-13 Score=110.72 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=65.9
Q ss_pred eEEEEEEecCCCceEEEEEc-cCchHHHHHHHHHHHhCCCCCceEEEEcCe-----------e----cCCCCCcccccCC
Q psy7993 205 EIALKLRLSNTCQDVRMKVF-TQETVAMIKKRLQSLEGIETSKQRWYYGGK-----------L----LSDKMKISDIQNL 268 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~-~tdTV~~LK~kI~e~eGIp~~qQRLiy~GK-----------i----LkD~~tL~dyqgI 268 (300)
.|+|+||+.+ |+. .|+|. +++||.+||++|++++|||+++|||+|.|+ . ++|..+|.+| ||
T Consensus 7 ~M~irvrs~~-G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~-gi 83 (107)
T 1wf9_A 7 GTMLRVRSRD-GLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSL-NL 83 (107)
T ss_dssp CEEEEEECSS-CEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGT-CC
T ss_pred eEEEEEECCC-CCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHC-CC
Confidence 4889999887 755 79999 999999999999999999999999999998 4 5899999999 99
Q ss_pred CCCCEEEEEecC
Q psy7993 269 ASGFVIQVIINN 280 (300)
Q Consensus 269 q~G~vI~vmV~k 280 (300)
+.|++||+....
T Consensus 84 ~~G~~L~l~~~~ 95 (107)
T 1wf9_A 84 AHGSMVYLAYEG 95 (107)
T ss_dssp CTTCEEECCCSS
T ss_pred CCCCEEEEEeCC
Confidence 999999976654
No 85
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.43 E-value=6.8e-13 Score=109.03 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=68.1
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC---ee----cCCCCCcccccCCCCCCEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG---KL----LSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G---Ki----LkD~~tL~dyqgIq~G~vI~v 276 (300)
..|+|+|+.+.....++++|.+++||++||.+|++++|||+++|||+|.| +. ++|..+|.+| ||++|++|||
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y-~i~~g~~ihv 83 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL-GVRDGYRIHA 83 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTT-TCCSSEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHC-CCCCCCEEEE
Confidence 36888888765113799999999999999999999999999999999987 42 5899999999 9999999999
Q ss_pred EecCCCC
Q psy7993 277 IINNLAG 283 (300)
Q Consensus 277 mV~kp~~ 283 (300)
+...|..
T Consensus 84 vd~~p~~ 90 (122)
T 1t0y_A 84 VDVTGGN 90 (122)
T ss_dssp EECTTCC
T ss_pred EeCCCCC
Confidence 8766554
No 86
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.42 E-value=3.1e-13 Score=127.96 Aligned_cols=76 Identities=21% Similarity=0.400 Sum_probs=67.8
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE---EcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY---YGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi---y~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
..|+|+|+.. |+.+.|+|++++||++||++|++++|||+++|||+ |.||+|+|..+|++| ||++|++|++|-++
T Consensus 4 ~~i~i~Vk~~--g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~-~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 4 KEVVVIVKWS--GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISAL-ELKPNFKLMMVGST 80 (320)
T ss_dssp CEEEEEEEET--TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSS-CCC--CEEEEECCC
T ss_pred ceEEEEEEEC--CEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHc-CCCCCCEEEEEccc
Confidence 5689999963 89999999999999999999999999999999999 899999999999999 99999999987665
Q ss_pred CC
Q psy7993 281 LA 282 (300)
Q Consensus 281 p~ 282 (300)
..
T Consensus 81 ~~ 82 (320)
T 3shq_A 81 EA 82 (320)
T ss_dssp C-
T ss_pred hh
Confidence 43
No 87
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=1.2e-12 Score=103.70 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=73.6
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
...|+|+|+..+ |+.+.+.|.+++++..|+++++++.||++.+|||+|.|+.|.+..|+++| ++++|++|+|++.+..
T Consensus 5 ~~~i~ikVk~~~-g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~~~G 82 (94)
T 2io1_B 5 NDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQTG 82 (94)
T ss_dssp -CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTCEEEEEECCEE
T ss_pred CCeEEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEeccC
Confidence 356999999887 99999999999999999999999999999999999999999999999999 9999999999987744
Q ss_pred C
Q psy7993 283 G 283 (300)
Q Consensus 283 ~ 283 (300)
+
T Consensus 83 G 83 (94)
T 2io1_B 83 G 83 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.35 E-value=6.9e-14 Score=124.38 Aligned_cols=69 Identities=9% Similarity=0.109 Sum_probs=0.0
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
|+|+||+++ |+.+.|+|++++||.+||++|++.+|||+++|||||.||+|+|..||. +|++|||+++-.
T Consensus 1 MqI~VKtL~-GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs------~~STLhLvlRLr 69 (189)
T 2xzm_9 1 MQVQVKTLE-GETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT------DDVTYYLSLKLL 69 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCC-CCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc------CCCEEEEEEecC
Confidence 689999998 999999999999999999999999999999999999999999999987 589999988653
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.34 E-value=1.1e-12 Score=100.95 Aligned_cols=72 Identities=14% Similarity=0.282 Sum_probs=63.3
Q ss_pred EEEEEEecCCCceEEEE-EccCchHHHHHHHHHHHhCCCCCceEEEEcC--eecC---CCCCcccccCCCCCCEEEEEec
Q psy7993 206 IALKLRLSNTCQDVRMK-VFTQETVAMIKKRLQSLEGIETSKQRWYYGG--KLLS---DKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~Ve-V~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G--KiLk---D~~tL~dyqgIq~G~vI~vmV~ 279 (300)
|+|+||+.+ |+. .|+ +.+++||.+||++|+++.||++++|||+|++ |.|. |..+|.+| ||++|++|+|...
T Consensus 1 m~i~vr~~~-G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~-gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKG-GTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDL-PIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETT-EEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTS-SCCTTCEEECCCC
T ss_pred CEEEEEcCC-CCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHc-CCCCCCEEEEEeC
Confidence 579999997 755 477 9999999999999999999999999999984 8884 78899999 9999999997544
Q ss_pred C
Q psy7993 280 N 280 (300)
Q Consensus 280 k 280 (300)
.
T Consensus 78 ~ 78 (86)
T 2kzr_A 78 Q 78 (86)
T ss_dssp S
T ss_pred C
Confidence 3
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.34 E-value=4.7e-12 Score=95.05 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=68.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|+|+|+..+ |+.+.+.|.++++++.|+.+++++.|+++.+|||+|.|+.|.+..|++++ ++.+|++|+|++
T Consensus 2 i~lkV~~~~-g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l-~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTT-SCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTT-TCCTTEEEEEEC
T ss_pred EEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEC
Confidence 789999887 99999999999999999999999999999999999999999999999999 999999999874
No 91
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.31 E-value=1.4e-11 Score=94.38 Aligned_cols=74 Identities=22% Similarity=0.379 Sum_probs=69.6
Q ss_pred CCceEEEEEEecCCCc-eEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 202 GGQEIALKLRLSNTCQ-DVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gk-dv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
+...|+|+|+..+ |+ .+.+.|.+++++..|+.+++++.|+++++|||+|.|+.|.+..|+.++ ++.+|++|+|+
T Consensus 4 ~~~~i~ikV~~~~-g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l-~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKE-KHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADL-GLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSS-TTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHH-TCCTTCEEEEE
T ss_pred CCCEEEEEEEeCC-CCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEe
Confidence 3456999999988 85 899999999999999999999999999999999999999999999999 99999999986
No 92
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=1.5e-11 Score=97.16 Aligned_cols=78 Identities=15% Similarity=0.280 Sum_probs=73.4
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
..|+|+|+..+ |+.+.+.|.+++++..|+.+++++.|+++.+|||+|.|+.|.+..|++++ ++.+|++|.|++.+..+
T Consensus 4 ~~i~ikVk~~~-g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 4 DHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECCCCC
T ss_pred CeEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEeccCC
Confidence 46999999887 99999999999999999999999999999999999999999999999999 99999999999877544
No 93
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.27 E-value=2.6e-11 Score=95.73 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=72.2
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
....|+|+|+..+ |+.+.+.|.+++++..|+.+++++.|+++++|||+|.|+.|.+..|+.++ ++.+|++|+|++.+
T Consensus 14 ~~~~i~ikV~~~~-g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl-~medgD~Idv~~~q 90 (93)
T 2d07_B 14 NNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 90 (93)
T ss_dssp -CCEEEEEEECTT-SCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCC-CCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHc-CCCCCCEEEEEeec
Confidence 4567999999887 89999999999999999999999999999999999999999999999999 99999999998865
No 94
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=3.1e-11 Score=97.60 Aligned_cols=82 Identities=16% Similarity=0.295 Sum_probs=75.3
Q ss_pred CCCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 201 VGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 201 ~~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
.....|+|+|+..+ |+.+.+.|.+++++..|+.+++++.||++.+|||+|.|+.|.+..|+.++ ++.+|++|+|++.+
T Consensus 20 ~~~~~I~IkVk~~~-g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~q 97 (104)
T 1wz0_A 20 ENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQ 97 (104)
T ss_dssp SCSCCEEEEEECSS-SCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTT-TCCTTEEEEECCCC
T ss_pred CCCCeEEEEEECCC-CCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEec
Confidence 34567999999887 89999999999999999999999999999999999999999999999999 99999999998876
Q ss_pred CCCC
Q psy7993 281 LAGP 284 (300)
Q Consensus 281 p~~p 284 (300)
.-+.
T Consensus 98 ~GG~ 101 (104)
T 1wz0_A 98 TSGP 101 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 5443
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.18 E-value=1.3e-10 Score=94.53 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=71.9
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
....|+|+|+. + |+.+.+.|.+++++..|+.+++++.|+++.+|||+|.|+.|.+..|..++ ++.+|++|.|++.+
T Consensus 28 ~~~~I~IkV~~-~-g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl-~medgD~Idv~~~q 103 (106)
T 2eke_C 28 PETHINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQ 103 (106)
T ss_dssp CCSEEEEEEEC-S-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECC
T ss_pred CCCeEEEEEec-C-CcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEeec
Confidence 45679999998 6 99999999999999999999999999999999999999999999999999 99999999998865
No 96
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.18 E-value=6.2e-11 Score=96.93 Aligned_cols=79 Identities=10% Similarity=0.257 Sum_probs=73.8
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
....|+|+|+..+ |+.+.+.|.+++++..|+.+++++.||++.+|||+|.|+.|.+..|+.++ ++.+|++|+|++.+.
T Consensus 23 ~~~~I~IkVk~~~-g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl-~mEDgD~Idv~~~q~ 100 (110)
T 2k8h_A 23 ETALVAVKVVNAD-GAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEEL-GMEDDDVIDAMVEQT 100 (110)
T ss_dssp CCCCEEEEEEETT-SCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHH-HCSSEEEEEEECCCC
T ss_pred CCCeEEEEEECCC-CCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEccc
Confidence 3467999999987 89999999999999999999999999999999999999999999999999 999999999988764
Q ss_pred C
Q psy7993 282 A 282 (300)
Q Consensus 282 ~ 282 (300)
.
T Consensus 101 G 101 (110)
T 2k8h_A 101 G 101 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 97
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.16 E-value=2e-10 Score=90.18 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=67.6
Q ss_pred CceEEEEEEec--CCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC------ee-c-CCCCCcccccCCCCCC
Q psy7993 203 GQEIALKLRLS--NTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG------KL-L-SDKMKISDIQNLASGF 272 (300)
Q Consensus 203 ~~~I~VkVRlS--~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G------Ki-L-kD~~tL~dyqgIq~G~ 272 (300)
...|+|+|+.. ..|..+.+.+.++.||++||.+|+...|+|+.+|||+|.+ .+ | +|..+|..| +|++|+
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y-~i~~G~ 85 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFY-SVENGD 85 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGG-TCCTTC
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhc-CCCCCC
Confidence 35788888864 3478999999999999999999999999999999999873 22 4 789999999 999999
Q ss_pred EEEEEecCCC
Q psy7993 273 VIQVIINNLA 282 (300)
Q Consensus 273 vI~vmV~kp~ 282 (300)
+|||....|.
T Consensus 86 ~I~V~d~~p~ 95 (97)
T 1wjn_A 86 CLLVRWSGPS 95 (97)
T ss_dssp EEEEECCSSC
T ss_pred EEEEEecCCC
Confidence 9999876543
No 98
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=1.1e-08 Score=84.53 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=71.6
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
+..-|+|+|+..+ |+.+.+.|.+++++..|+....++.|+++.++|++|.|+.|.+..|..++ ++.+|++|.|++.+
T Consensus 37 ~~~~I~LKV~~qd-g~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL-~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 37 EGEYIKLKVIGQD-SSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL-GMEEEDVIEVYQEQ 113 (115)
T ss_dssp --CEEEEEEECTT-SCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTT-TCCTTCEEEEEECC
T ss_pred CCCeEEEEEEcCC-CCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHc-CCCCCCEEEEEeec
Confidence 3578999999887 88999999999999999999999999999999999999999999999998 99999999998865
No 99
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=98.76 E-value=2e-09 Score=91.16 Aligned_cols=51 Identities=49% Similarity=0.845 Sum_probs=44.3
Q ss_pred chhhhccccCCCCCCCCccchhhccCccccceeeccCccccccCCCCCCCcc
Q psy7993 141 RHVLVCANCYFPHPGFLTESYDELGNKYMVPVYCLSYPINITKETSGRDSPI 192 (300)
Q Consensus 141 ~~~~~~an~~~~~~~~~~E~~De~~~~y~lp~~~~s~p~Nl~~~~~~~~s~~ 192 (300)
..++++|+|.+|. |.+.++||++|++|+||+||+|+|+||+.+.+++++.+
T Consensus 78 Q~IldaAgItvp~-gdL~~cYDe~G~~Y~LP~yvls~P~Nl~~~~~~~~~~~ 128 (137)
T 2ksn_A 78 QAIIDGANITLPH-GALTECYDELGNRYQLPVYCLAPPINMIEEKSDIETLD 128 (137)
T ss_dssp HHHHHHHSCBCSS-CCSSEEEETTTEEEECCGGGTCCSTTTCCCTTTCSCCC
T ss_pred HHHHHHcCCcccC-CcHHHHHhccCCccCCCeeEeeCCccccccccccchhh
Confidence 3567899999996 88889999999999999999999999999876666544
No 100
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.69 E-value=6.9e-08 Score=86.46 Aligned_cols=79 Identities=15% Similarity=0.284 Sum_probs=72.8
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
...-|+|||+. + |+.+.+.|.+++++..|++...++.|+++.++|++|.|+.|.+..|..++ ++.+|++|.|++.+.
T Consensus 26 ~~~~I~LkV~~-~-g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL-~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 26 PETHINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQI 102 (200)
T ss_dssp CCCCEEEEEEC-S-SCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECCS
T ss_pred CCCeEEEEEec-C-CCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEeccC
Confidence 45679999974 5 89999999999999999999999999999999999999999999999998 999999999998775
Q ss_pred CC
Q psy7993 282 AG 283 (300)
Q Consensus 282 ~~ 283 (300)
.+
T Consensus 103 gg 104 (200)
T 3pge_A 103 GG 104 (200)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 101
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.57 E-value=1.4e-07 Score=84.62 Aligned_cols=78 Identities=13% Similarity=0.256 Sum_probs=71.6
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
...-|+|||+ .+ |+.+.+.|.+++++..|++...++.|+++.++|++|.|+.|.++.|..++ ++.+|++|.|++.+.
T Consensus 54 p~e~InLKVk-~d-G~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDL-dMEDGDtIDV~leQ~ 130 (207)
T 3tix_A 54 PETHINLKVS-DG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDL-DMEDNDIIEAHREQI 130 (207)
T ss_dssp -CCEEEEEEE-CS-SCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTT-TCCTTEEEEECCCCC
T ss_pred CCCcEEEEEe-cC-CCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHc-CCCCCCEEEEEEecc
Confidence 3567999997 34 89999999999999999999999999999999999999999999999998 999999999988765
Q ss_pred C
Q psy7993 282 A 282 (300)
Q Consensus 282 ~ 282 (300)
-
T Consensus 131 G 131 (207)
T 3tix_A 131 G 131 (207)
T ss_dssp T
T ss_pred C
Confidence 4
No 102
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.51 E-value=9.4e-07 Score=68.94 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=70.2
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC-ceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS-KQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~-qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
+.|++.+|.|. ..++.+.|.++.+|.+|-+....+.||+++ ..||.|-|..|..+.++.+| .+.+|+.|.||+
T Consensus 8 ~~~~~~~~~~~-~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dl-emeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSK-SEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQST-ELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESS-SCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGS-SCCTTCEEEEEC
T ss_pred HHHHHhhhccC-CCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhh-CCcCCceeeeee
Confidence 57999999998 899999999999999999999999999998 89999999999999999999 999999999986
No 103
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.32 E-value=8.8e-07 Score=70.85 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=44.7
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLS 257 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLk 257 (300)
+.+.|+- +.+ +.-+++.|.+.+||..+|++|++++|||+.+|||+|.||.|.
T Consensus 13 kvvHVf~-~~~-a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 13 MVIHVFS-LQQ-MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEE-TTT-TEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred eeEEEEE-ccc-ceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 4445444 333 899999999999999999999999999999999999998874
No 104
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.18 E-value=8.4e-07 Score=68.13 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=58.8
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCee-----cCCCCCcccccCCCCCCEEEE
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKL-----LSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKi-----LkD~~tL~dyqgIq~G~vI~v 276 (300)
.|.||||... ..+.|++++++||.+|+.+|+++.+++.+.|.++++-.. +....+|.+. ||+.|++|.+
T Consensus 4 ~m~lRvrs~~--G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~l-gl~hGd~l~l 77 (80)
T 2pjh_A 4 SIIIRVQSPD--GVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLL-KIKHGDLLFL 77 (80)
T ss_dssp CCCCEEECSS--EEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTT-CCCTTCCEEC
T ss_pred cEEEEEECCC--CCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHc-CCCCCCEEEE
Confidence 4788999875 588899999999999999999999999888877665554 3478899998 9999999975
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.18 E-value=1.4e-05 Score=64.02 Aligned_cols=74 Identities=18% Similarity=0.335 Sum_probs=68.3
Q ss_pred CCceEEEEEEecCCC-ceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 202 GGQEIALKLRLSNTC-QDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 202 ~~~~I~VkVRlS~~G-kdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
....|+|+|+..+ | ..+.+.|.++.+...|.....++.|+++...|++|.|..|....|..+. ++.+|++|-|+
T Consensus 22 ~~~~I~LkV~~~d-g~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dL-dMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKE-KHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADL-GMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESS-SSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHH-TCCTTEEEEEE
T ss_pred CCCeEEEEEEcCC-CCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEe
Confidence 3467999999887 7 4899999999999999999999999999999999999999999999998 99999999875
No 106
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.13 E-value=3.1e-07 Score=83.38 Aligned_cols=78 Identities=15% Similarity=0.306 Sum_probs=0.4
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
..-|+||| ..+ |+.+.+.|.+++++..|++...++.|+++.++|++|.|+.|.++.|..++ ++.+|++|.|++.+.-
T Consensus 19 ~e~InLKV-~qd-GseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL-~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 19 ETHINLKV-SDG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQIG 95 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCC-CCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHc-CCCCCCEEEEEecccC
Confidence 35688888 444 89999999999999999999999999999999999999999999999998 9999999999987654
Q ss_pred C
Q psy7993 283 G 283 (300)
Q Consensus 283 ~ 283 (300)
+
T Consensus 96 G 96 (227)
T 3v7o_A 96 G 96 (227)
T ss_dssp C
T ss_pred C
Confidence 3
No 107
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.07 E-value=1.4e-05 Score=71.01 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=70.7
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
..-|.|||+. + |+.+.+.|..+++...|++...++.|+++.++|++|.|+.+.+..|..+. .+.++++|.++..+..
T Consensus 19 ~~~i~ikv~~-~-~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L-~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 19 ETHINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQIG 95 (209)
T ss_dssp CSEEEEEEEC-S-SCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTT-TCCTTEEEEEECSCTT
T ss_pred CCcEEEEEEc-C-CCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHh-hhcccccchhhccccc
Confidence 3568888875 4 88999999999999999999999999999999999999999999999998 9999999999877654
No 108
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.84 E-value=0.00021 Score=57.22 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 201 VGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 201 ~~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
.....|+|+|| .. |..+.+.|..++....|.+...++.|++++..|++|.|..+.+..|-.+. ++.+|++|-+++-+
T Consensus 17 ~~~~~IniKV~-~~-g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L-~meD~DiID~~~~~ 93 (95)
T 2l76_A 17 ETPRLFPLKIR-CR-ADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTL-KLGVADIIDCVVLT 93 (95)
T ss_dssp SCCCCEEEEEE-CS-SSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHH-TCCSSCEEEEEECC
T ss_pred CCCCeEEEEEE-cC-CcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHc-CCCCCCEEEEEEec
Confidence 34456999999 44 89999999999999999999999999999999999999999999999998 99999999998844
No 109
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.68 E-value=5.5e-06 Score=79.97 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=0.0
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~ 282 (300)
..-|+|||+. + |+.+.+.|.++++...|++...++.|+++.++|++|.|+.|.++.|.+++ ++++|++|.|+..+..
T Consensus 19 ~~~I~LKV~~-~-g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L-~MEDgD~Idv~~~Q~g 95 (360)
T 3ix6_A 19 ETHINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQIG 95 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-C-CcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHc-CCCccchhhhhhccCc
Confidence 3568888875 4 78999999999999999999999999999999999999999999999998 9999999999887643
No 110
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.66 E-value=6.3e-06 Score=78.66 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNL 281 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp 281 (300)
....|+|||+. + |..+.+.|.++++...|++...++.|++..++|++|.|+.|.++.|..+. ++.+|++|.+++.+-
T Consensus 27 ~~~~i~lkv~~-~-~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l-~med~d~i~~~~~q~ 103 (389)
T 4da1_A 27 PETHINLKVSD-G-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDL-DMEDNDIIEAHREQI 103 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEEec-C-CcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHc-CCCCCCEeeeeeccc
Confidence 34678888875 4 88999999999999999999999999999999999999999999999998 999999999998774
Q ss_pred C
Q psy7993 282 A 282 (300)
Q Consensus 282 ~ 282 (300)
.
T Consensus 104 g 104 (389)
T 4da1_A 104 G 104 (389)
T ss_dssp -
T ss_pred c
Confidence 3
No 111
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.39 E-value=0.00027 Score=59.25 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=59.5
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC-------------------------------------ceE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS-------------------------------------KQR 248 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~-------------------------------------qQR 248 (300)
=.|+||+.+ |...++.|+.+.||.+++..|..+.||+.. +||
T Consensus 12 r~LkV~llD-g~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 12 RPLKIRMLD-GTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEEECTT-SCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred ccEEEEcCC-CCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHH
Confidence 379999998 999999999999999999999999999854 566
Q ss_pred EEE--cCeecCCCCCcccccCCCCCCEEEE
Q psy7993 249 WYY--GGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 249 Liy--~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
|-. .+..|.+..||.++ ||.++.+|-+
T Consensus 91 L~~dd~~~WLD~srtL~EQ-GI~e~~tllL 119 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTLREQ-GVEEHETLLL 119 (128)
T ss_dssp CCCSSSEEEECSSSCHHHH-TCCTTSEEEE
T ss_pred hcccCCCCcccCCCcHHHc-CCCCCCEEEE
Confidence 632 34788999999996 9999999754
No 112
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.22 E-value=0.00075 Score=52.41 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=62.0
Q ss_pred eEEEEEEecC-CCceEEEEEccCchHHHHHHHHHHHhCCCC-----CceEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy7993 205 EIALKLRLSN-TCQDVRMKVFTQETVAMIKKRLQSLEGIET-----SKQRWYYGGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 205 ~I~VkVRlS~-~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~-----~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
=|.|.+.++. .++.+.+.+....||+.|++.|-+..+++. -+.|+.-.|..|.+..+|.+| +|.+|+.|.+
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~-~ItnGD~Lei 80 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDC-GITNGDRLEI 80 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGG-TCCTTCEEEE
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeC-CcCCCCEEEE
Confidence 3677888743 389999999999999999999999998875 245899999999999999999 9999999875
No 113
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.12 E-value=0.0026 Score=48.40 Aligned_cols=70 Identities=7% Similarity=0.158 Sum_probs=60.1
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE--EcCeec---CCCCCcccccCCCCCCEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY--YGGKLL---SDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi--y~GKiL---kD~~tL~dyqgIq~G~vI~v 276 (300)
...+|.||+.+ |+.+.-.+..++||.+|..-|.. .+.+....+|+ |-.|.| +...||.++ ||.++.+|.|
T Consensus 6 ~~~~i~iRlpd-G~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~-gL~p~a~L~v 80 (84)
T 3qx1_A 6 PVSKLRIRTPS-GEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEV-KLFPQETLFL 80 (84)
T ss_dssp CEEEEEEECTT-SCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTT-TCCSEEEEEE
T ss_pred CeEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHC-CCCCCCEEEE
Confidence 46899999998 99999999999999999999988 67777777887 447888 357899999 9999999876
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.33 E-value=0.037 Score=44.34 Aligned_cols=73 Identities=10% Similarity=0.125 Sum_probs=60.8
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE--EcCeecC---CCCCcccccCCCCCCEEEEEe
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY--YGGKLLS---DKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi--y~GKiLk---D~~tL~dyqgIq~G~vI~vmV 278 (300)
...+|.||+.+ |..+.-.+..++||.+|..-|....+.+...-.|+ |--|.|. ...||.+. |+.+..+|++--
T Consensus 12 ~~t~IqIRlpd-G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~el-gL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPD-GSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDL-ELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSS-SCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGG-TCSSEEEEEEEC
T ss_pred CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHC-CCCCceEEEEEE
Confidence 46899999998 99999999999999999999999877765555665 4577886 37899999 999998877644
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.08 E-value=0.033 Score=44.54 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=58.7
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE--EcCeecC--CCCCcccccCCCCCCEEEE
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY--YGGKLLS--DKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi--y~GKiLk--D~~tL~dyqgIq~G~vI~v 276 (300)
...++|.||+.+ |+.+.-.+..++||.+|..=|... +.....-+|+ |=.|.|. ...||.++ ||.+..+|.|
T Consensus 21 ~~~~~IqiRlpd-G~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~-gL~p~a~L~V 95 (109)
T 2cr5_A 21 EEVVTVALRCPN-GRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDI-GITVDTVLNV 95 (109)
T ss_dssp SSEEEEEEECTT-SCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHH-TCSSCEEEEE
T ss_pred CCcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHc-CCCCCeEEEE
Confidence 468999999998 999999999999999999999865 4444555665 4578886 47899999 9999988865
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.06 E-value=0.021 Score=47.04 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=60.1
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE--EcCeec--CC-CCCcccccCCCCCCEEEEE
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY--YGGKLL--SD-KMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi--y~GKiL--kD-~~tL~dyqgIq~G~vI~vm 277 (300)
....+|.||+.+ |..+.-.+..++||.+|..-|... +.+...-.|+ |=.|.| .| ..||.+. ||.+..+|.|-
T Consensus 41 ~~~t~IqIRlPd-G~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~-gL~psa~Liv~ 117 (124)
T 1wj4_A 41 GPKAQLMLRYPD-GKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEA-GLCPQETVFVQ 117 (124)
T ss_dssp SCEEEEEEECTT-SCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTT-TCCSSBCCEEE
T ss_pred CCcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHC-CCCCceEEEEE
Confidence 457999999998 999999999999999999999887 7766666776 558888 33 7899999 99998877653
No 117
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.68 E-value=0.041 Score=43.55 Aligned_cols=77 Identities=10% Similarity=0.074 Sum_probs=66.8
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecCCCC
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLAG 283 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~kp~~ 283 (300)
-|.|.|.... ++..+|.|.++.|+.+|=+.--++.|+++++-.|-|.+|.|+=..++.-. ||..|..+-++.+...+
T Consensus 9 ~m~v~Vl~~n-~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRls-gLpnnAkLELv~~s~s~ 85 (90)
T 2al3_A 9 GSAVSVLAPN-GRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFA-NLPNNAKLEMVPVSRSR 85 (90)
T ss_dssp -CCEEEECTT-SCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHH-CCCSSCEEEEECSSSCC
T ss_pred ccEEEEEcCC-CcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEec-CCCCCCEEEEEEccCCC
Confidence 3578887776 99999999999999999999999999999888999999999888888887 99999999986655443
No 118
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.45 E-value=0.035 Score=45.69 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=58.1
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHh-CCCCCceEEE--EcCeecCC-CCCcccccCCCCCCEEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLE-GIETSKQRWY--YGGKLLSD-KMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~e-GIp~~qQRLi--y~GKiLkD-~~tL~dyqgIq~G~vI~vm 277 (300)
...+|.||+.+ |..+.-.+..++||.+|..-|.... +.......|+ |-.|.|.| ..||.++ |+.+..+|+-+
T Consensus 51 ~~t~IqIRlpd-G~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~ea-gL~psavl~k~ 126 (127)
T 1s3s_G 51 PTTNIQIRLAD-GGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEA-NLLNAVIVQRL 126 (127)
T ss_dssp CCCCEEEEETT-TTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHH-TCSSCEEEEEE
T ss_pred CcEEEEEECCC-CCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHC-CCcCceEEEEe
Confidence 46899999998 9999999999999999999998863 3444455665 45788875 7899999 99997777643
No 119
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.61 E-value=0.35 Score=42.75 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=56.8
Q ss_pred eEEEEEEecCCC-ceEEEEEccCchHHHHHHHHHHHhCCCCC-ceEEE--E-c--CeecCC-CCCcccccCCCCCCEEEE
Q psy7993 205 EIALKLRLSNTC-QDVRMKVFTQETVAMIKKRLQSLEGIETS-KQRWY--Y-G--GKLLSD-KMKISDIQNLASGFVIQV 276 (300)
Q Consensus 205 ~I~VkVRlS~~G-kdv~VeV~~tdTV~~LK~kI~e~eGIp~~-qQRLi--y-~--GKiLkD-~~tL~dyqgIq~G~vI~v 276 (300)
.+.|++...... ..+++.++..+||.+|++++.+..+|+.+ ..||. | . ...|.| +.||.++ +|.+|..|.+
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~-~l~~~Q~ill 205 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA-GLYQGQVLVI 205 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHH-TCCTTCEEEE
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHh-CCCCCCEEEE
Confidence 344555443312 34678889999999999999999999987 57863 3 2 235665 5799999 9999999988
Q ss_pred EecCCC
Q psy7993 277 IINNLA 282 (300)
Q Consensus 277 mV~kp~ 282 (300)
=++...
T Consensus 206 E~r~~d 211 (217)
T 4a3p_A 206 EQKNED 211 (217)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 776543
No 120
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.60 E-value=0.42 Score=42.68 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=58.1
Q ss_pred ceEEEEEEecCCC-ceEEEEEccCchHHHHHHHHHHHhCCCCC-ceEEEE-c----CeecCC-CCCcccccCCCCCCEEE
Q psy7993 204 QEIALKLRLSNTC-QDVRMKVFTQETVAMIKKRLQSLEGIETS-KQRWYY-G----GKLLSD-KMKISDIQNLASGFVIQ 275 (300)
Q Consensus 204 ~~I~VkVRlS~~G-kdv~VeV~~tdTV~~LK~kI~e~eGIp~~-qQRLiy-~----GKiLkD-~~tL~dyqgIq~G~vI~ 275 (300)
-.+.+++...... ..+++.++..+||.+|++++....+|+.+ ..||.. . ...|.| +.||.++ +|..|..|-
T Consensus 138 yP~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~-~L~~~Q~il 216 (231)
T 3jyu_A 138 YLLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDA-GLYQGQVLV 216 (231)
T ss_dssp SCEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTT-TCCTTEEEE
T ss_pred ecceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHh-CCCCCCEEE
Confidence 3445555444311 24567889999999999999999999997 578743 3 335665 5899999 999999998
Q ss_pred EEecCCCC
Q psy7993 276 VIINNLAG 283 (300)
Q Consensus 276 vmV~kp~~ 283 (300)
+=++...+
T Consensus 217 lE~r~~dg 224 (231)
T 3jyu_A 217 IEPQNEDG 224 (231)
T ss_dssp EEECCTTS
T ss_pred EEEecCCC
Confidence 87765443
No 121
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.36 E-value=0.32 Score=39.78 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=48.5
Q ss_pred ceEEEEEEecCC-CceEEEEEccCchHHHHHHHHHHH--hCCCCC------ceEEEE----cCeecCCC-----------
Q psy7993 204 QEIALKLRLSNT-CQDVRMKVFTQETVAMIKKRLQSL--EGIETS------KQRWYY----GGKLLSDK----------- 259 (300)
Q Consensus 204 ~~I~VkVRlS~~-Gkdv~VeV~~tdTV~~LK~kI~e~--eGIp~~------qQRLiy----~GKiLkD~----------- 259 (300)
+.++|.+-.... +..+.|.|-..|||.++|+||-+. .|.|.+ ...|=+ .|++|.|.
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wk 89 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWK 89 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CC
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcce
Confidence 456666654431 456888888999999999999877 366543 334443 35677652
Q ss_pred --CCcccccCCCCCCEEEEE
Q psy7993 260 --MKISDIQNLASGFVIQVI 277 (300)
Q Consensus 260 --~tL~dyqgIq~G~vI~vm 277 (300)
.||..| +|.+|.+|-++
T Consensus 90 rLNTL~HY-~V~dgatl~l~ 108 (111)
T 4e71_A 90 RVNTLMHY-NVRDGATLILS 108 (111)
T ss_dssp CCCBHHHH-TCCTTCEEEEE
T ss_pred Eecchhhc-CCCCCCEEEEE
Confidence 478889 99999999653
No 122
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=91.94 E-value=0.69 Score=43.27 Aligned_cols=70 Identities=11% Similarity=0.049 Sum_probs=56.5
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhC----CCCCceEEEE------cCeecCCCCCcccccCCCCCCEE
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEG----IETSKQRWYY------GGKLLSDKMKISDIQNLASGFVI 274 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eG----Ip~~qQRLiy------~GKiLkD~~tL~dyqgIq~G~vI 274 (300)
.+.+||++. +..-++.++++.||.++-++|.++.. .+.+.--||- .|+.|++..||+.| +++.|..|
T Consensus 3 ~~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y-~~~~~~~l 79 (371)
T 3ivf_A 3 ALSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYY-MLRNGDTM 79 (371)
T ss_dssp CEEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGG-TCCTTCEE
T ss_pred cEEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHh-CCCCCcee
Confidence 367888886 67788999999999999999988753 2445556766 56779999999999 99999987
Q ss_pred EEE
Q psy7993 275 QVI 277 (300)
Q Consensus 275 ~vm 277 (300)
+.-
T Consensus 80 ~~~ 82 (371)
T 3ivf_A 80 EYR 82 (371)
T ss_dssp EEE
T ss_pred ecc
Confidence 754
No 123
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=91.18 E-value=1.4 Score=37.37 Aligned_cols=76 Identities=18% Similarity=0.319 Sum_probs=51.9
Q ss_pred CceEEEEEEecC-----CCceEEEEEccCchHHHHHHHHHHHh--CCCCCc------eEEEE----cCe-ecCCC-----
Q psy7993 203 GQEIALKLRLSN-----TCQDVRMKVFTQETVAMIKKRLQSLE--GIETSK------QRWYY----GGK-LLSDK----- 259 (300)
Q Consensus 203 ~~~I~VkVRlS~-----~Gkdv~VeV~~tdTV~~LK~kI~e~e--GIp~~q------QRLiy----~GK-iLkD~----- 259 (300)
-..++|.|=... ....+.|.|-..|||.++|+||-+.. |+|-++ .-|=+ .|+ +|.|.
T Consensus 22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence 345677664432 13578899999999999999999884 666433 23333 244 47663
Q ss_pred --------CCcccccCCCCCCEEEEEec
Q psy7993 260 --------MKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 260 --------~tL~dyqgIq~G~vI~vmV~ 279 (300)
.||..| +|.+|.+|-++-+
T Consensus 102 ~~~~wkrLNTL~HY-~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 102 VQGLWRRLNTLQHY-KVPDGATVALVPC 128 (138)
T ss_dssp EETTEEECCBHHHH-TCCTTCEEEEEEC
T ss_pred ccCCceeecchhcc-CCCCCCEEEEEEC
Confidence 389999 9999999976433
No 124
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.13 E-value=0.99 Score=33.00 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=44.4
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCC--CceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIET--SKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~--~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+|+||+-..=++-.+++ ...||++|.+.|....++.. ...+++-+|+...+. +. -+++|+.|-++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~----~~-~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL----NT-PLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT----TC-CCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC----Cc-CCCCCCEEEEE
Confidence 467777765323334666 67899999999987654432 345777888885432 33 68899998754
No 125
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.19 E-value=4.6 Score=30.94 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=47.9
Q ss_pred eEEEEEEecC-----CC-ceEEEEEccCchHHHHHHHHHHHhC-CC----------CCceEEEEcCeecCCCCCcccccC
Q psy7993 205 EIALKLRLSN-----TC-QDVRMKVFTQETVAMIKKRLQSLEG-IE----------TSKQRWYYGGKLLSDKMKISDIQN 267 (300)
Q Consensus 205 ~I~VkVRlS~-----~G-kdv~VeV~~tdTV~~LK~kI~e~eG-Ip----------~~qQRLiy~GKiLkD~~tL~dyqg 267 (300)
.|+|+||+-. .| ....+++....||++|.+.|..... +. .....++.+|+.... ++ -
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~-~ 82 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE-E 82 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC-B
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC-C
Confidence 5788888754 14 4678888888999999999987631 11 134568888988753 44 6
Q ss_pred CCCCCEEEEE
Q psy7993 268 LASGFVIQVI 277 (300)
Q Consensus 268 Iq~G~vI~vm 277 (300)
+++|+.|-++
T Consensus 83 L~dGDeV~i~ 92 (98)
T 1vjk_A 83 LKDGDVVGVF 92 (98)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 8889998653
No 126
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=88.14 E-value=2.3 Score=35.53 Aligned_cols=62 Identities=8% Similarity=0.277 Sum_probs=44.6
Q ss_pred CceEEEEEccCchHHHHHHHHHHH--hCCCC------CceEEEE-cC---e-ecCCC-------------CCcccccCCC
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSL--EGIET------SKQRWYY-GG---K-LLSDK-------------MKISDIQNLA 269 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~--eGIp~------~qQRLiy-~G---K-iLkD~-------------~tL~dyqgIq 269 (300)
+..+.|.|-..|||.++|+||-+. .|+|. +...|=| .| + +|.|. .||..| +|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY-~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY-KIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT-TCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc-CCC
Confidence 455777788899999999999887 35554 3445544 33 3 36551 478889 999
Q ss_pred CCCEEEEEe
Q psy7993 270 SGFVIQVII 278 (300)
Q Consensus 270 ~G~vI~vmV 278 (300)
+|.+|-++-
T Consensus 95 dgatv~l~~ 103 (127)
T 3h6n_A 95 EGASLAMSL 103 (127)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEE
Confidence 999997653
No 127
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.80 E-value=1.2 Score=34.52 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=51.3
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCe-----ecCCCCCcccccCCCC--CCEEEEE
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGK-----LLSDKMKISDIQNLAS--GFVIQVI 277 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GK-----iLkD~~tL~dyqgIq~--G~vI~vm 277 (300)
.++|||+.. -.+.|.|.++.+..+|..+|.++.+++++...|.|.-. ++-.+..|+.. |+. +.-+.+.
T Consensus 5 ~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~a--w~~~~n~~LtL~ 79 (83)
T 1oey_A 5 AYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDA--WGQVKNYCLTLW 79 (83)
T ss_dssp CEEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHH--HTTCBTTEEEEE
T ss_pred cEEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHH--HHhccCCcEEEE
Confidence 378888775 48999999999999999999999999998889999753 23334555554 333 4445544
Q ss_pred e
Q psy7993 278 I 278 (300)
Q Consensus 278 V 278 (300)
+
T Consensus 80 C 80 (83)
T 1oey_A 80 C 80 (83)
T ss_dssp E
T ss_pred E
Confidence 3
No 128
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=87.65 E-value=3.7 Score=33.74 Aligned_cols=75 Identities=15% Similarity=0.357 Sum_probs=49.9
Q ss_pred ceEEEEEEecC--CCceEEEEEccCchHHHHHHHHHHH--hCCCCC------ceEEEE-cC---e-ecCC----------
Q psy7993 204 QEIALKLRLSN--TCQDVRMKVFTQETVAMIKKRLQSL--EGIETS------KQRWYY-GG---K-LLSD---------- 258 (300)
Q Consensus 204 ~~I~VkVRlS~--~Gkdv~VeV~~tdTV~~LK~kI~e~--eGIp~~------qQRLiy-~G---K-iLkD---------- 258 (300)
..++|.+-... ....+.|.|-..|||.++|+||-+. .|.|.+ ...|-+ .| + +|.|
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 34566654322 1345888888999999999999877 466644 334543 33 3 3554
Q ss_pred ---CCCcccccCCCCCCEEEEEec
Q psy7993 259 ---KMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 259 ---~~tL~dyqgIq~G~vI~vmV~ 279 (300)
-.||..| +|.+|.+|-++-+
T Consensus 92 wkrLNTL~HY-~V~dgatl~l~~~ 114 (117)
T 4e74_A 92 WKRLNTLAHY-QVPDGSVVALVSK 114 (117)
T ss_dssp CCCCCBHHHH-TCCTTCEEEEEEC
T ss_pred ceEecccccc-CCCCCCEEEEEeC
Confidence 1478889 9999999986543
No 129
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=86.53 E-value=2 Score=33.85 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=51.3
Q ss_pred EEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 220 RMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 220 ~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
...++=..++..||+.|+.+.|++-+.-.+...+..|+...+|.+ |+++-...||+.|--
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~Lvd-QcVqgeGlVQinvqi 65 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFD-QGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTT-SSCCCCSEEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHH-hhcccccEEEEEEEE
Confidence 345566788999999999999999988888788889999999999 599999998887644
No 130
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=82.86 E-value=1.7 Score=32.39 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=45.2
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+|+||+.. .....+++..+.||++|-++ .||+++..-.+.+|+++..+.. .+|+.|-++
T Consensus 1 M~v~Vkl~g-~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~-------l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVG-EETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQS-------VEVDRVKVL 60 (74)
T ss_dssp CEEEEECSS-SSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSS-------SCCCCEEEC
T ss_pred CEEEEEEeC-ccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHHC-------CCCCEEEEE
Confidence 578888874 55667899999999988655 6999988878889998865542 237776653
No 131
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=81.87 E-value=5.2 Score=30.06 Aligned_cols=69 Identities=10% Similarity=0.173 Sum_probs=43.3
Q ss_pred EEEEEEecC-----CCceEEEEEccCchHHHHHHHHHHHhC-C-----C---C----CceEEEEcCeecCCCCCcccccC
Q psy7993 206 IALKLRLSN-----TCQDVRMKVFTQETVAMIKKRLQSLEG-I-----E---T----SKQRWYYGGKLLSDKMKISDIQN 267 (300)
Q Consensus 206 I~VkVRlS~-----~Gkdv~VeV~~tdTV~~LK~kI~e~eG-I-----p---~----~qQRLiy~GKiLkD~~tL~dyqg 267 (300)
|+|+||+.. .|+...+++ ...||++|.+.|.++.. + . . ...+++-+|+......-+. + -
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~-~-~ 77 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLA-T-A 77 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGG-C-B
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCC-c-C
Confidence 456666543 243334664 46799999999987752 1 1 0 1357778888776544444 3 6
Q ss_pred CCCCCEEEEE
Q psy7993 268 LASGFVIQVI 277 (300)
Q Consensus 268 Iq~G~vI~vm 277 (300)
+++|+.|.++
T Consensus 78 L~~gDeV~i~ 87 (93)
T 3dwg_C 78 IADGDSVTIL 87 (93)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 8999998754
No 132
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=80.73 E-value=13 Score=26.84 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=43.9
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+|+|.-- .....+++....||.+|.+++ +++.....+..+|.++..+. -+++|+.|-++
T Consensus 5 m~i~vNg~--~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~------~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTVITD--DGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE------EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEEET--TEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS------BCCTTCEEEEE
T ss_pred EEEEEeCc--cCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc------cCCCCCEEEEE
Confidence 66666532 234566777888999998876 67777778999999997554 36778988754
No 133
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=80.46 E-value=1.8 Score=35.65 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=28.3
Q ss_pred EEEEccCchHHHHHHHHHHHhCCCCCceEEEEc
Q psy7993 220 RMKVFTQETVAMIKKRLQSLEGIETSKQRWYYG 252 (300)
Q Consensus 220 ~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~ 252 (300)
.+.|-++.||.++|..|++..|+|+++|||-+.
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 355667889999999999999999999997544
No 134
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=79.35 E-value=11 Score=27.88 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=40.1
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhC-CCC----------CceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEG-IET----------SKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eG-Ip~----------~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
....+++....||++|.+.|..... +.. ...+++-+|+.... ++ -+++|+.|-++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~-~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GE-ATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TS-BCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----Cc-ccCCCCEEEEE
Confidence 6778888888899999999987742 210 12578888988764 33 67889998754
No 135
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=78.94 E-value=10 Score=34.33 Aligned_cols=76 Identities=7% Similarity=0.020 Sum_probs=56.4
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCc-eEEEEc--Ce--ecCCCCCcccccCCCCCCEEEE
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSK-QRWYYG--GK--LLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~q-QRLiy~--GK--iLkD~~tL~dyqgIq~G~vI~v 276 (300)
.+..+.++|.+.+ | ++.+.|+++.|+.+|=.+|.+..||.... =-|+|. |. .|+...+|.+. .++.+....+
T Consensus 19 ~~~~~~~~V~lld-g-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q-~~~~~~~~~l 95 (314)
T 1h4r_A 19 QPKTFTVRIVTMD-A-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDH-DVSKEEPVTF 95 (314)
T ss_dssp --CEEEEEEECSS-C-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGS-SCCCSSSEEE
T ss_pred CCCeeEEEEEeCC-c-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHc-CCCCCCCEEE
Confidence 3678999999998 7 89999999999999999999999997522 245553 32 47778888884 7766665544
Q ss_pred EecC
Q psy7993 277 IINN 280 (300)
Q Consensus 277 mV~k 280 (300)
.++.
T Consensus 96 ~fr~ 99 (314)
T 1h4r_A 96 HFLA 99 (314)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 136
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=78.35 E-value=5.3 Score=36.63 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=40.9
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcC-eecCCCCCcc
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGG-KLLSDKMKIS 263 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~G-KiLkD~~tL~ 263 (300)
-.-..+.+.+..|+..++++|+++.+|+++.|.++|.| +..-+..+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~ 369 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLA 369 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBT
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCcc
Confidence 57778899999999999999999999999999999999 4555555444
No 137
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=78.17 E-value=28 Score=28.89 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=41.2
Q ss_pred ceEEEEEccCchHHHHHHHHHHH-h---CCCCCc----eEEEE-cC---eecCC--------------CCCcccccCCCC
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSL-E---GIETSK----QRWYY-GG---KLLSD--------------KMKISDIQNLAS 270 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~-e---GIp~~q----QRLiy-~G---KiLkD--------------~~tL~dyqgIq~ 270 (300)
..+.|.|-..|||.++|+||-+. . |.|-++ ..|=+ .| ++|.| -.||..| +|.+
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY-~V~D 117 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHY-EISN 117 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGG-TCCT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEecccccc-CCCC
Confidence 46788888999999999999865 3 777542 23322 22 23333 1367788 9999
Q ss_pred CCEEEEEec
Q psy7993 271 GFVIQVIIN 279 (300)
Q Consensus 271 G~vI~vmV~ 279 (300)
|.+|-+ ++
T Consensus 118 gatlal-~k 125 (126)
T 3kuz_A 118 GSTIKV-FK 125 (126)
T ss_dssp TCEEEE-EE
T ss_pred CCEEEE-ee
Confidence 999964 44
No 138
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=76.64 E-value=19 Score=27.92 Aligned_cols=57 Identities=5% Similarity=0.030 Sum_probs=42.0
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCc-eEEEEcCeecCCCCCcc
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSK-QRWYYGGKLLSDKMKIS 263 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~q-QRLiy~GKiLkD~~tL~ 263 (300)
..|+||+... |.-+.+.+.+..+..+|.+||.+..+++..+ -.+.|.-.. .|.-+|.
T Consensus 5 ~~vkvK~~~~--gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe-GD~itis 62 (89)
T 1vd2_A 5 SQVRVKAYYR--GDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE-GDPCTVS 62 (89)
T ss_dssp SCEEEEEESS--SCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS-SCCEECC
T ss_pred CeEEEEEEeC--CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC-CCccccc
Confidence 4567777664 6778889999999999999999999998655 477776543 3333443
No 139
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=76.59 E-value=15 Score=34.16 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=57.3
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC-ceEEEEcC---------eecCCCCCcccccCCCCCC
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS-KQRWYYGG---------KLLSDKMKISDIQNLASGF 272 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~-qQRLiy~G---------KiLkD~~tL~dyqgIq~G~ 272 (300)
+..+.++|.+.+ |....+.|+++.|+.+|-.+|.++.|+... ---|+|.- +.|+-.++|.+. +....+
T Consensus 83 ~~~~~~~V~l~d-g~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q-~~~~~~ 160 (371)
T 3ivf_A 83 KKQRPLKIRMLD-GTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQ-GVEEHE 160 (371)
T ss_dssp ECEEEEEEECTT-SCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGG-TCCTTC
T ss_pred CceeEEEEECcC-CCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhh-CCCCCc
Confidence 356899999998 999999999999999999999999998742 22455532 345666777774 777788
Q ss_pred EEEEEec
Q psy7993 273 VIQVIIN 279 (300)
Q Consensus 273 vI~vmV~ 279 (300)
+++..++
T Consensus 161 ~l~frvK 167 (371)
T 3ivf_A 161 TLLLRRK 167 (371)
T ss_dssp EEEEEEC
T ss_pred eEEEEEE
Confidence 8776543
No 140
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=75.75 E-value=16 Score=28.02 Aligned_cols=69 Identities=13% Similarity=0.124 Sum_probs=44.4
Q ss_pred ceEEEEEEecC-----CC-ceEEEEEccCchHHHHHHHHHHHh-CCCC---------Cce-------EEEEcCeecCCCC
Q psy7993 204 QEIALKLRLSN-----TC-QDVRMKVFTQETVAMIKKRLQSLE-GIET---------SKQ-------RWYYGGKLLSDKM 260 (300)
Q Consensus 204 ~~I~VkVRlS~-----~G-kdv~VeV~~tdTV~~LK~kI~e~e-GIp~---------~qQ-------RLiy~GKiLkD~~ 260 (300)
.+|+|+||+.. .| +.+.++ ..||.+|.+.|..+. ++.. ... .++.+|+......
T Consensus 2 ~mm~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 2 HMAEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CCCEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred CceEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 35788998865 13 345554 689999999998773 1211 013 6788888775333
Q ss_pred CcccccCCCCCCEEEEE
Q psy7993 261 KISDIQNLASGFVIQVI 277 (300)
Q Consensus 261 tL~dyqgIq~G~vI~vm 277 (300)
.+. + -+++|+.|.++
T Consensus 79 ~~~-~-~L~~gD~V~i~ 93 (99)
T 2l52_A 79 GLE-T-LLKDSDEIGIL 93 (99)
T ss_dssp STT-S-CCCTTEEEEEE
T ss_pred CCC-C-CCCCCCEEEEE
Confidence 333 3 68899998753
No 141
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=75.73 E-value=5.5 Score=28.89 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=37.3
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhC-----CCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEG-----IETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eG-----Ip~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
..+.++ ....||++|.+.|..+.. ++.....++.+|+.... +. -+++|+.|.++
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~-~l~~gD~V~i~ 75 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DH-PLTDGDEVAFF 75 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TC-BCCTTCEEEEE
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CC-CCCCCCEEEEe
Confidence 456666 567899999999875521 22234578889988753 33 68889998753
No 142
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=74.44 E-value=12 Score=38.52 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=51.9
Q ss_pred CCceEEEEEEecCC-----CceEEEEEccCchHHHHHHHHHHH--hCCCCCc------eEEEE-c---Ce-ecCCC----
Q psy7993 202 GGQEIALKLRLSNT-----CQDVRMKVFTQETVAMIKKRLQSL--EGIETSK------QRWYY-G---GK-LLSDK---- 259 (300)
Q Consensus 202 ~~~~I~VkVRlS~~-----Gkdv~VeV~~tdTV~~LK~kI~e~--eGIp~~q------QRLiy-~---GK-iLkD~---- 259 (300)
+-..++|.|-...+ ...+.|.|-..|||.++|+||-+. .|+|.++ ..|=+ . |+ +|.|.
T Consensus 254 e~~~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts 333 (644)
T 3hm6_X 254 EYRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTS 333 (644)
T ss_dssp CCCEEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTC
T ss_pred cceeEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccc
Confidence 44567888754321 245889999999999999999976 4666543 33333 2 33 46653
Q ss_pred ---------CCcccccCCCCCCEEEEE
Q psy7993 260 ---------MKISDIQNLASGFVIQVI 277 (300)
Q Consensus 260 ---------~tL~dyqgIq~G~vI~vm 277 (300)
.||..| +|.+|.+|-++
T Consensus 334 ~~~~~wkrLNTL~HY-~V~dga~v~L~ 359 (644)
T 3hm6_X 334 EVQGLWRRLNTLQHY-KVPDGATVALV 359 (644)
T ss_dssp CEETTEEECCBTTTT-TCCTTCEEEEE
T ss_pred eecCcceeecchhhc-CCCCCcEEEEE
Confidence 489999 99999999754
No 143
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=72.33 E-value=15 Score=32.63 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=53.7
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCc-eEEEEc---Ce--ecCCCCCcccccCCCCCCEEEEEec
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSK-QRWYYG---GK--LLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~q-QRLiy~---GK--iLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
|.|+|.+.+ | ++.+.|++..|+++|-.+|.+..||.... =-|+|. |. .|+-..+|.+. +++.+....+.++
T Consensus 2 i~~~V~l~d-~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q-~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMD-A-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQ-DVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETT-E-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGS-CBCCCSSEEEEEE
T ss_pred EEEEEEECC-c-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhh-ccCCCCCEEEEEE
Confidence 789999997 6 78999999999999999999999997532 145553 32 46777888874 7666655555444
Q ss_pred C
Q psy7993 280 N 280 (300)
Q Consensus 280 k 280 (300)
.
T Consensus 79 ~ 79 (294)
T 1ef1_A 79 A 79 (294)
T ss_dssp E
T ss_pred E
Confidence 4
No 144
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=71.62 E-value=8.2 Score=30.74 Aligned_cols=62 Identities=11% Similarity=0.053 Sum_probs=48.0
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCce-EEE------EcCeecCCCCCcccc
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQ-RWY------YGGKLLSDKMKISDI 265 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQ-RLi------y~GKiLkD~~tL~dy 265 (300)
...+-|||=..+ |....|.|++++|++++-++|.++.++..+.- -|+ +.-+.|+|.+.|.+.
T Consensus 7 ~~k~vvkvf~~D-gssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 7 GRPHVVKVYSED-GACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp CSCEEEEEEETT-SCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCCEEEEEEecC-CCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 344677776676 89999999999999999999999987764322 222 366889999988876
No 145
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=71.28 E-value=29 Score=26.37 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=26.9
Q ss_pred eEEEEEEecC-----C-C-ceEEEEEc--cCchHHHHHHHHHHHh
Q psy7993 205 EIALKLRLSN-----T-C-QDVRMKVF--TQETVAMIKKRLQSLE 240 (300)
Q Consensus 205 ~I~VkVRlS~-----~-G-kdv~VeV~--~tdTV~~LK~kI~e~e 240 (300)
+|+|+||+.. . | +.+++++. ...||++|.+.|.++.
T Consensus 1 mM~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred CcEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 3678887754 2 2 46777776 6789999999998876
No 146
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=69.64 E-value=15 Score=33.31 Aligned_cols=75 Identities=9% Similarity=-0.113 Sum_probs=53.6
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCc-eEEEEcC-----eecCCCCCcccccCCCCCCEEE
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSK-QRWYYGG-----KLLSDKMKISDIQNLASGFVIQ 275 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~q-QRLiy~G-----KiLkD~~tL~dyqgIq~G~vI~ 275 (300)
.+..+.++|.+.+ |....+.|++..|+.+|=.+|.++.||.... --|+|.. ..|+..++|.+. .......+.
T Consensus 14 ~~~~~~~~V~lld-gt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q-~~~~~~~l~ 91 (296)
T 3qij_A 14 LYFQGHCKVSLLD-DTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ-VRGVPWNFT 91 (296)
T ss_dssp ---CCEEEEECTT-SCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHH-C---CCEEE
T ss_pred CCceEEEEEEccC-CCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHh-cCCCCcEEE
Confidence 4567999999998 9999999999999999999999999997422 2455532 357777888874 544455665
Q ss_pred EEe
Q psy7993 276 VII 278 (300)
Q Consensus 276 vmV 278 (300)
..+
T Consensus 92 frv 94 (296)
T 3qij_A 92 FNV 94 (296)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 147
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=66.77 E-value=34 Score=35.27 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=52.1
Q ss_pred CCceEEEEEEecC--CCceEEEEEccCchHHHHHHHHHHH--hCCCCC------ceEEEE-c---Ce-ecCC--------
Q psy7993 202 GGQEIALKLRLSN--TCQDVRMKVFTQETVAMIKKRLQSL--EGIETS------KQRWYY-G---GK-LLSD-------- 258 (300)
Q Consensus 202 ~~~~I~VkVRlS~--~Gkdv~VeV~~tdTV~~LK~kI~e~--eGIp~~------qQRLiy-~---GK-iLkD-------- 258 (300)
+-..++|.|--.. ....+.|.|-..|||.++|+||-+. .|+|-+ ...|=+ . |+ +|.|
T Consensus 230 e~~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 309 (627)
T 3ig3_A 230 DYKTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIE 309 (627)
T ss_dssp CCCEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEE
T ss_pred cceeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCcccccc
Confidence 4456777775433 1356889999999999999999977 356543 334433 2 33 3544
Q ss_pred -----CCCcccccCCCCCCEEEEEe
Q psy7993 259 -----KMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 259 -----~~tL~dyqgIq~G~vI~vmV 278 (300)
-.||..| +|.+|.+|-++-
T Consensus 310 ~~wkrLNTL~HY-~V~Dga~v~L~p 333 (627)
T 3ig3_A 310 CDWKRVNSLAHY-QVTDGSLVALVP 333 (627)
T ss_dssp TTEEECCBTTTT-TCCTTCEEEEEE
T ss_pred CceeEecchhhc-CCCCCceEEEEe
Confidence 2578899 999999998643
No 148
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=66.34 E-value=10 Score=29.15 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=41.4
Q ss_pred ceEEEEEEecCCCceEEEEEccC-chHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQ-ETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~t-dTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
..|+|+| +|+.+. +... .||.+|.+.| +++.....+..+|+++.... ..+. -+++|+.|-++
T Consensus 19 ~~M~I~v----NGe~~e--l~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~-~~~~-~L~dGD~Vei~ 81 (87)
T 1tyg_B 19 GRHMLQL----NGKDVK--WKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKER-YHEV-ELCDRDVIEIV 81 (87)
T ss_dssp ---CEEE----TTEEEC--CSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGG-TTTS-BCCSSSEEEEE
T ss_pred cceEEEE----CCEEEE--CCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhh-cCCc-CCCCCCEEEEE
Confidence 3466665 256544 4665 7999998876 67777778899999986432 2233 68899998765
No 149
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.20 E-value=25 Score=35.35 Aligned_cols=74 Identities=7% Similarity=0.091 Sum_probs=56.1
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC-ceEEEEcC-----eecCCCCCcccccCCCCCCEEEEE
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS-KQRWYYGG-----KLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~-qQRLiy~G-----KiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
..|.|+|.+.+ | ++.|.|+++.|+.+|=..|....||.-. ---|+|.. ..|+-..+|.+. +++.+..+.+.
T Consensus 3 k~i~v~V~llD-g-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q-~~~~~~~~~L~ 79 (575)
T 2i1j_A 3 KSMNVRVTTMD-A-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQ-DVKKENPLQFK 79 (575)
T ss_dssp CEEEEEEECSS-C-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGS-CBCCCSSEEEE
T ss_pred ceEEEEEEeCC-C-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHh-cccCCCCeEEE
Confidence 56899999997 6 7889999999999999999999999743 23566542 356777888874 77776665554
Q ss_pred ecC
Q psy7993 278 INN 280 (300)
Q Consensus 278 V~k 280 (300)
++.
T Consensus 80 FRv 82 (575)
T 2i1j_A 80 FRA 82 (575)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 150
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=60.86 E-value=37 Score=27.30 Aligned_cols=54 Identities=13% Similarity=0.261 Sum_probs=43.8
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCCCCC----------ceEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGIETS----------KQRWYYGGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGIp~~----------qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
.+++|.|....-|+-|--||-++.+++.+ +++| .|+-..||..| ||+.+..++.
T Consensus 33 ~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~W-----Llkt~~tLDky-giqADa~L~f 96 (102)
T 2kmc_A 33 TEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCW-----LLKTHWTLDKC-GVQADANLLF 96 (102)
T ss_dssp EEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEE-----ECCTTSBHHHH-TCCTTSCEEE
T ss_pred ccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchh-----hhhhhhhhhhh-ceeeeeeeec
Confidence 45777777788999999999999887742 3345 57889999999 9999998874
No 151
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=60.34 E-value=6.9 Score=38.98 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=27.5
Q ss_pred EEEccCchHHHHHHHHHHHhCCCCCceEEEEc
Q psy7993 221 MKVFTQETVAMIKKRLQSLEGIETSKQRWYYG 252 (300)
Q Consensus 221 VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~ 252 (300)
+.|.++.|+.+||.+|++..|+|+++|||-..
T Consensus 40 ~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~ 71 (530)
T 2ylm_A 40 FKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 71 (530)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSCGGGEEEEEE
T ss_pred EEEcCcCCHHHHHHHHHHHhCcCcccEEEEEE
Confidence 45667889999999999999999999997443
No 152
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=59.49 E-value=60 Score=25.21 Aligned_cols=72 Identities=11% Similarity=0.095 Sum_probs=54.3
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHH-hCCCC----CceEEEEcCee--cCCCCCcccccCCCCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSL-EGIET----SKQRWYYGGKL--LSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~-eGIp~----~qQRLiy~GKi--LkD~~tL~dyqgIq~G~vI~vmV 278 (300)
+.|..+.-.+=-..-|.|+..+|+.++..|+..- .|+-. .-.|..+.|.. |..+.|+.+. ||++=..|-++.
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaea-Gl~Pme~vev~~ 82 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAES-GLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHH-CCCTTCEEEEEE
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeecc-CCCcceEEEEEE
Confidence 4455555431123446889999999999999865 34322 35699999999 9999999999 999998888764
No 153
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.81 E-value=17 Score=28.65 Aligned_cols=65 Identities=9% Similarity=0.126 Sum_probs=56.4
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE---EcCeecCCCCCcccccCCCC
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY---YGGKLLSDKMKISDIQNLAS 270 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi---y~GKiLkD~~tL~dyqgIq~ 270 (300)
..+.+-|.+.. .+...|.|++..+..+|--.|-++-.+.++.--|. -++..|+=+.+|.+| ||++
T Consensus 9 ~TvRLvVNy~~-tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndl-girE 76 (91)
T 2daj_A 9 KTVRVVINFKK-TQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDL-GLRE 76 (91)
T ss_dssp SCEEEEEEETT-TEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHH-TCSE
T ss_pred cEEEEEEeecC-cceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhh-hhhh
Confidence 56888888887 78899999999999999999999999998776554 356678889999999 9998
No 154
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=56.57 E-value=54 Score=26.06 Aligned_cols=36 Identities=3% Similarity=-0.008 Sum_probs=27.3
Q ss_pred eEEEEEEecC-----CC--ceEEEEEcc---CchHHHHHHHHHHHh
Q psy7993 205 EIALKLRLSN-----TC--QDVRMKVFT---QETVAMIKKRLQSLE 240 (300)
Q Consensus 205 ~I~VkVRlS~-----~G--kdv~VeV~~---tdTV~~LK~kI~e~e 240 (300)
.|+|+||+.. .| +.++|++.. ..||++|...|.+..
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~ 56 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL 56 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence 3899999876 23 366788873 359999999998775
No 155
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=53.92 E-value=18 Score=25.42 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=37.8
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+.+ ...||.+|.+.+ +++.....+..+|+.+....- .+. -+++|+.|-++
T Consensus 6 g~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~~-~~~-~L~dgD~v~i~ 58 (64)
T 2cu3_A 6 GEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLEV-PDR-PLRDGDVVEVV 58 (64)
T ss_dssp TEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGGC-CCC-CCCTTCEEEEE
T ss_pred CEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcccc-CCc-CCCCCCEEEEE
Confidence 555544 568999998877 566677788999998864322 223 68899998764
No 156
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=53.81 E-value=18 Score=25.79 Aligned_cols=54 Identities=7% Similarity=0.006 Sum_probs=38.3
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCCCCCce--EEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGIETSKQ--RWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQ--RLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
....+++....||++|.+.|..... ..... .+..+|+....+ . -+++|+.|-++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~-~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----D-FIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----S-EECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----C-CcCCCCEEEEE
Confidence 4567777788899999999987631 01223 788899988653 3 57789988753
No 157
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=50.74 E-value=54 Score=23.79 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=36.5
Q ss_pred EEEccCchHHHHHHHHHHHhC------C-----CCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 221 MKVFTQETVAMIKKRLQSLEG------I-----ETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 221 VeV~~tdTV~~LK~kI~e~eG------I-----p~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
+++....||++|.+.|..+.. + ......++.+|+......-+. + -+++|+.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~-~-~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLD-T-EIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSS-C-BCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCC-c-CCCCCCEEEEe
Confidence 455566899999999987741 1 013457888998876333233 3 58899998753
No 158
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=50.23 E-value=24 Score=34.59 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=47.3
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCc--eEEEEcC----eecCCCCCccc
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSK--QRWYYGG----KLLSDKMKISD 264 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~q--QRLiy~G----KiLkD~~tL~d 264 (300)
.+..+.++|.+.+ |....+.|++..|+++|-..|..+.|+.... =-|++.. +.|+++..+.+
T Consensus 213 ~~~~~~~~V~l~d-g~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 213 HRQEMTSTVYCHG-GGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp TTCCEEEEEEETT-SCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred hCCCcceEEEecC-CCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 3567999999998 9999999999999999999999999997422 2455432 22566655543
No 159
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=50.04 E-value=13 Score=30.28 Aligned_cols=63 Identities=16% Similarity=0.344 Sum_probs=47.2
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCC----------CceEEEEcCeecCCCCCcccccCCCCCCEEE
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIET----------SKQRWYYGGKLLSDKMKISDIQNLASGFVIQ 275 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~----------~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~ 275 (300)
.|+|.+.+-+.+++|.|.....|+-|--||-++.+++. .+++| .|+-..||..| ||+.+..++
T Consensus 26 eL~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~W-----Llkt~~tLDk~-giqADa~L~ 98 (112)
T 2lgx_A 26 ELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTW-----LLKTHWTLDKY-GIQADAKLQ 98 (112)
T ss_dssp CEECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEE-----ECCTTSCHHHH-TCCTTCBBC
T ss_pred EEEEEEecCCccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchh-----hhcchhhHhhh-ceeccccce
Confidence 34444333346777778778899999999999987763 34455 67888999999 999998765
No 160
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=49.25 E-value=39 Score=28.10 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=36.8
Q ss_pred cCchHHHHHHHHHHHhCCCC-------CceEEEEcCeecCC--CCCcccccCCCCCCEEEEE
Q psy7993 225 TQETVAMIKKRLQSLEGIET-------SKQRWYYGGKLLSD--KMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 225 ~tdTV~~LK~kI~e~eGIp~-------~qQRLiy~GKiLkD--~~tL~dyqgIq~G~vI~vm 277 (300)
...|.++|-..|.++.|.+- ..+||+|-=- +.| .++|.+. |++.|.+|.++
T Consensus 18 ~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~D-fDDnl~k~L~dL-gv~~gsfLtv~ 77 (127)
T 3onh_A 18 NKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYD-FEDLNDRTLSEI-NLGNGSIILFS 77 (127)
T ss_dssp HHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETT-BCTTTTSBTTTT-TCCTTCEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCC-ccccccCcHHHc-CcCCCcEEEEE
Confidence 34689998888988888752 1456666432 333 5799998 99999998765
No 161
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=48.04 E-value=24 Score=27.50 Aligned_cols=47 Identities=4% Similarity=-0.101 Sum_probs=33.8
Q ss_pred eEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCe
Q psy7993 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGK 254 (300)
Q Consensus 205 ~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GK 254 (300)
.|+||+ .-.+--|.|.|.++-+..+|+.||.....+. +.+-++|.+.
T Consensus 12 ~~KVK~--yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 12 TTKIKF--YYKDDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CEEEEE--CBTTCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred ceEEEE--EecCcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 355555 4435678899999999999999999999884 3333444444
No 162
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=47.34 E-value=14 Score=26.15 Aligned_cols=54 Identities=11% Similarity=0.094 Sum_probs=38.0
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+ ++....||.+|.+.+ +++.....+..+|+.+.... ..+. -+++|+.|-++
T Consensus 7 g~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~-~L~~gD~v~i~ 60 (66)
T 1f0z_A 7 DQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQ-WAQH-IVQDGDQILLF 60 (66)
T ss_dssp SCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHH-HTTC-CCCTTEEECEE
T ss_pred CEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchh-cCCc-CCCCCCEEEEE
Confidence 5554 446778999998887 67777778899999886421 1223 58889988754
No 163
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=45.04 E-value=1.1e+02 Score=23.76 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=48.1
Q ss_pred EEEEEccCchHHHHHHHHHHH-hC--CC--CC-ceEEEEcC--eecCCCCCcccccCCCCCCEEEEEec
Q psy7993 219 VRMKVFTQETVAMIKKRLQSL-EG--IE--TS-KQRWYYGG--KLLSDKMKISDIQNLASGFVIQVIIN 279 (300)
Q Consensus 219 v~VeV~~tdTV~~LK~kI~e~-eG--Ip--~~-qQRLiy~G--KiLkD~~tL~dyqgIq~G~vI~vmV~ 279 (300)
.-|.|+..+|+.++..|+..- .| ++ +. -.|..+.| +.|....|+.+. ||++=..|-+++.
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~-gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDA-GLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGS-CCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeecc-CCCCceEEEEEEc
Confidence 346889999999999999865 34 21 12 35888999 999999999998 9999888887653
No 164
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=43.31 E-value=18 Score=26.52 Aligned_cols=53 Identities=8% Similarity=0.069 Sum_probs=37.8
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+.+ ...||.+|-+. .|+++...-+.++|.++.-.. ..+. -+++|+.|-++
T Consensus 7 G~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~~-~~~~-~L~dGD~veIv 59 (73)
T 2kl0_A 7 GEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPRGK-WDET-PVTAGDEIEIL 59 (73)
T ss_dssp TEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECHHH-HTTC-BCCTTCEEEEE
T ss_pred CEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECChHH-cCcc-cCCCCCEEEEE
Confidence 565554 56899988764 588888788999999986331 2233 68889999864
No 165
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=42.46 E-value=23 Score=36.39 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=40.4
Q ss_pred CceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCee-cCCCCCcccc
Q psy7993 216 CQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKL-LSDKMKISDI 265 (300)
Q Consensus 216 Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKi-LkD~~tL~dy 265 (300)
.+-..+.+.+..|+..++.+|+++.||+++.|-+++.+.. |.......+|
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 6777889999999999999999999999999988876654 4444455543
No 166
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=38.74 E-value=43 Score=34.18 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=41.2
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC-ceEEEE
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS-KQRWYY 251 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~-qQRLiy 251 (300)
.+..|.++|.+.+ |....+.|++..|+++|-.+|..+.|+... ---|+|
T Consensus 260 ~~~~i~~~V~llD-gt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 260 SKKPIMLPVTFMD-GTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp HTCCEEEEEEETT-SCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred cCCceEEEEEecC-CceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 3567999999998 999999999999999999999999998642 224555
No 167
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=38.33 E-value=84 Score=24.47 Aligned_cols=68 Identities=13% Similarity=0.018 Sum_probs=46.4
Q ss_pred ceEEEEEEecC--CCceEEEEEccCchHHHHHHHHHH--H-hCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 204 QEIALKLRLSN--TCQDVRMKVFTQETVAMIKKRLQS--L-EGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 204 ~~I~VkVRlS~--~Gkdv~VeV~~tdTV~~LK~kI~e--~-eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
++|+|-|=... ...-+.+++..+.||+++-+.+.- + ..|......+...|+..+ .++ -+++|+.|-++
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~-~L~dGDRVEIy 83 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTD-VLKEGDRIEIY 83 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTC-BCCTTCEEEEC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCc-cCCCCCEEEEE
Confidence 45555555433 234677888899999999887653 2 245555677888899887 333 68889999853
No 168
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=37.89 E-value=7.9 Score=30.98 Aligned_cols=68 Identities=7% Similarity=0.108 Sum_probs=39.1
Q ss_pred EEEEEEecC-----CCceEEEEEcc----CchHHHHHHHHHHHhCCCCCceEEEEc-C--e------ecCCCCCc-----
Q psy7993 206 IALKLRLSN-----TCQDVRMKVFT----QETVAMIKKRLQSLEGIETSKQRWYYG-G--K------LLSDKMKI----- 262 (300)
Q Consensus 206 I~VkVRlS~-----~Gkdv~VeV~~----tdTV~~LK~kI~e~eGIp~~qQRLiy~-G--K------iLkD~~tL----- 262 (300)
|+|+|+++. .|+...|++.. ..||++|-+.|.+.. +..+.+||-. | . +|-+..-.
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 566666654 14555677663 249999988888764 2223444422 3 1 34333332
Q ss_pred ccccCCCCCCEEEE
Q psy7993 263 SDIQNLASGFVIQV 276 (300)
Q Consensus 263 ~dyqgIq~G~vI~v 276 (300)
.+| -+++|++|.+
T Consensus 83 ldt-~L~dgD~V~f 95 (110)
T 2k9x_A 83 MDY-VLNDGDTVEF 95 (110)
T ss_dssp SCC-CCCSSCEEEE
T ss_pred ccc-CCCCcCEEEE
Confidence 134 6889998654
No 169
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=37.74 E-value=11 Score=36.78 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHhcccCCHHHHHHHHhhc
Q psy7993 68 EGRKEIWDALHAAASAAEGNDFQLAQAILDGA 99 (300)
Q Consensus 68 ~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA 99 (300)
.++.++..+++.|+++++.||.+.|..+|..|
T Consensus 377 ~~~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A 408 (464)
T 4fx5_A 377 TGQAEMAAAIQEGLDAQAAGDLDTATARLGRA 408 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 36889999999999999999999999999876
No 170
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=36.85 E-value=52 Score=22.93 Aligned_cols=62 Identities=16% Similarity=0.024 Sum_probs=38.3
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEe
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV 278 (300)
|.|+|.+.. |+. .++..+.|+.+|.+.|....+ ....-....|++..-. + -+++|..|.++-
T Consensus 1 m~i~i~~p~-g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~-~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPK-GEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----Y-VLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTT-CCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----C-BCCSSSBEEEEE
T ss_pred CeEEEEcCC-CCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----c-CcCCCCEEEEEE
Confidence 456777665 665 566788999999988843321 1112234588766533 3 466788777654
No 171
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=31.75 E-value=12 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=34.2
Q ss_pred EEEEccCchHHHHHHHHHHHhCCCCCceEEEEcCeecCCCCCcccccCCCCCCEEEE
Q psy7993 220 RMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQV 276 (300)
Q Consensus 220 ~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~v 276 (300)
.+++....||.+|.+.+ +++.....+..+|+.+..+ + -+++|+.|-+
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~-~L~dGD~V~i 70 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----D-EVKDGDFVEV 70 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----S-CCCSSCCCBC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----C-CcCCCCEEEE
Confidence 34556678999998765 5676667889999998754 3 5777887753
No 172
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=31.01 E-value=1.2e+02 Score=27.73 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=49.5
Q ss_pred CCceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCC--ceEE-E----EcCeecCCCCCccccc-CCCCCC
Q psy7993 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETS--KQRW-Y----YGGKLLSDKMKISDIQ-NLASGF 272 (300)
Q Consensus 202 ~~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~--qQRL-i----y~GKiLkD~~tL~dyq-gIq~G~ 272 (300)
....+.|+|=+.+ |....|.|++++|+++|-+.|..+.++... +.-+ . ..-+.|.|.+.|.+.. .|..+.
T Consensus 28 ~~~k~ivkv~~~D-~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds 105 (281)
T 4gmv_A 28 QVKKLVIRVHMSD-DSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDS 105 (281)
T ss_dssp SSCEEEEEEEETT-SCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTC
T ss_pred CcccEEEEEEecC-CCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCC
Confidence 3456677776776 899999999999999999999988876532 2211 1 1257899999887741 454444
No 173
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=29.93 E-value=1e+02 Score=30.49 Aligned_cols=73 Identities=10% Similarity=0.164 Sum_probs=55.3
Q ss_pred ceEEEEEEecCC-CceEE----EEEccCchHHHHHHHHHHHhCCCCCceEEEEc------CeecC-CCCCcccc-cCCCC
Q psy7993 204 QEIALKLRLSNT-CQDVR----MKVFTQETVAMIKKRLQSLEGIETSKQRWYYG------GKLLS-DKMKISDI-QNLAS 270 (300)
Q Consensus 204 ~~I~VkVRlS~~-Gkdv~----VeV~~tdTV~~LK~kI~e~eGIp~~qQRLiy~------GKiLk-D~~tL~dy-qgIq~ 270 (300)
+.+.|++|.-+- .+.+. +-|..+++|.+|-..|.+..|+|++.--.+|. ...|+ -+.|+.++ +.|++
T Consensus 129 ~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~ 208 (530)
T 2ylm_A 129 HDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMD 208 (530)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCT
T ss_pred CcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccC
Confidence 568999987652 34544 67899999999999999999999976655554 34466 47788873 27999
Q ss_pred CCEEEE
Q psy7993 271 GFVIQV 276 (300)
Q Consensus 271 G~vI~v 276 (300)
|++|..
T Consensus 209 GdII~f 214 (530)
T 2ylm_A 209 GDIIVF 214 (530)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 999854
No 174
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=29.05 E-value=1.3e+02 Score=22.85 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=35.4
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEE
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRW 249 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRL 249 (300)
.|++-|.. ++.-+|+|.++.|+.+.-.|+-+.-|+.++.-..
T Consensus 3 ~irvhLPn-~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V 44 (77)
T 1c1y_B 3 TIRVFLPN-KQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAV 44 (77)
T ss_dssp EEEEEETT-TEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEE
T ss_pred eEEEECCC-CceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEE
Confidence 57787887 8888999999999999999999999998754443
No 175
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=28.52 E-value=47 Score=26.31 Aligned_cols=27 Identities=7% Similarity=-0.161 Sum_probs=24.0
Q ss_pred ceEEEEEccCchHHHHHHHHHHHhCCC
Q psy7993 217 QDVRMKVFTQETVAMIKKRLQSLEGIE 243 (300)
Q Consensus 217 kdv~VeV~~tdTV~~LK~kI~e~eGIp 243 (300)
..+.|-|.+.-+..+|..||.++.+++
T Consensus 23 d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 23 EIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 358899999999999999999998875
No 176
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=27.86 E-value=87 Score=23.77 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=24.8
Q ss_pred CceEEEEEEecCCCceEEEEEccCchHHHHHHH
Q psy7993 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKR 235 (300)
Q Consensus 203 ~~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~k 235 (300)
..+++|++...+ |+..++++.+++|+.+.-.+
T Consensus 4 ~~m~~V~~~~~~-g~~~~v~~~~g~tLL~aa~~ 35 (108)
T 2bt6_A 4 GDKITVHFINRD-GETLTTKGKIGDSLLDVVVQ 35 (108)
T ss_dssp -CEEEEEEECTT-SCEEEEEEETTCBHHHHHHH
T ss_pred CceEEEEEECCC-CCEEEEEECCCChHHHHHHH
Confidence 456788887565 88889999999999887654
No 177
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=26.65 E-value=1.6e+02 Score=23.23 Aligned_cols=44 Identities=18% Similarity=0.076 Sum_probs=36.8
Q ss_pred EEEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE
Q psy7993 206 IALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY 250 (300)
Q Consensus 206 I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi 250 (300)
..|++-|.. ++--+|+|.++.|+.+.-.|+-+.-|+.++.-..+
T Consensus 18 ~~irvhLPN-qQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 18 PIVRVFLPN-KQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp CEEEEEETT-TEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cEEEEECCC-CCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 378888887 88899999999999999999999999987654443
No 178
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=26.00 E-value=1e+02 Score=21.04 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCCCCce----------EEEEcCeecCCC
Q psy7993 229 VAMIKKRLQSLEGIETSKQ----------RWYYGGKLLSDK 259 (300)
Q Consensus 229 V~~LK~kI~e~eGIp~~qQ----------RLiy~GKiLkD~ 259 (300)
++.|-+.+.+..|+|++.. .|.|+|+.+.|.
T Consensus 19 ~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~~~~~~ 59 (62)
T 3m20_A 19 VERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGKLIADR 59 (62)
T ss_dssp HHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTEETTCC
T ss_pred HHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCEEhhhh
Confidence 4444455556679987654 388888888764
No 179
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=25.09 E-value=39 Score=20.87 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.1
Q ss_pred CCCCCCCCCcccCCC
Q psy7993 281 LAGPKLVPPVESMKS 295 (300)
Q Consensus 281 p~~p~~~~~~~~~~~ 295 (300)
|++|+|+|+-.++.|
T Consensus 10 PsRPAPKPP~s~t~s 24 (26)
T 2rqw_B 10 PSRPAPKPPSSASAS 24 (26)
T ss_dssp CSSCCCCCSSCSCCC
T ss_pred cCCCCCCCCCCCccc
Confidence 889999999666655
No 180
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.93 E-value=1.4e+02 Score=23.19 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=36.6
Q ss_pred EEEEEecCCCceEEEEEccCchHHHHHHHHHHHhCCCCCceEEE
Q psy7993 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWY 250 (300)
Q Consensus 207 ~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~eGIp~~qQRLi 250 (300)
.|++-|.. ++.-+|+|.++.|+.+.-.|+-+.-|+.++.-..+
T Consensus 9 ~irvhLPn-~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPN-KQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSS-SCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred eEEEECCC-CCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 78888887 88899999999999999999999999987654443
No 181
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=24.83 E-value=1.3e+02 Score=24.09 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=31.6
Q ss_pred ceEEEEEEecCCCceEEEEEccCchHHHHHHHHHHHh
Q psy7993 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLE 240 (300)
Q Consensus 204 ~~I~VkVRlS~~Gkdv~VeV~~tdTV~~LK~kI~e~e 240 (300)
..+.|.+=+.+ |--+.+++....|+.++|+.|-+++
T Consensus 18 ~~v~v~~LlPn-Gi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 18 PRILVECLLPN-GMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp SEEEEEEECTT-SCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred CcEEEEEEcCc-EEEEEEEeeccccHHHHHHHHHHHH
Confidence 56788887777 9999999999999999999998775
No 182
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=24.23 E-value=36 Score=26.58 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=27.8
Q ss_pred cccCCHHHHHHHHhhcCeeee-------cCCchhheccCCCcccc
Q psy7993 84 AEGNDFQLAQAILDGANISVP-------NGFLTESYDELGNKYMV 121 (300)
Q Consensus 84 ~~~~d~~~Aq~il~aA~itlp-------~g~l~~~yD~~G~~Y~l 121 (300)
+...|++.+.+-|.++|+++. .|....+.|-.||..+|
T Consensus 104 f~VdDvda~~~~l~~~Gv~~~~~p~~~~~g~~~~f~DPdGn~iel 148 (155)
T 4g6x_A 104 FAVDDIAAEYERLSALGVRFTQEPTDMGPVVTAILDDTCGNLIQL 148 (155)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEEECSSCEEEEEECSSSCEEEE
T ss_pred eeechhhhhhhHHhcCCcEEeeCCEEcCCeEEEEEECCCCCEEEE
Confidence 445799999999999999873 34444577888885444
No 183
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=23.22 E-value=2e+02 Score=20.66 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=20.2
Q ss_pred CCCceEEEEcCeecCCCCCcccccCCCCCCEEEEEecC
Q psy7993 243 ETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINN 280 (300)
Q Consensus 243 p~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vmV~k 280 (300)
|.-..+|+..|+.|.+.....- ..+|..-.+.++.
T Consensus 33 p~~~v~W~k~g~~i~~~~~~~i---~~~~~~~~L~I~~ 67 (91)
T 2lvc_A 33 EDAPVRWYKDGQEVEESDFVVL---ENEGPHRRLVLPA 67 (91)
T ss_dssp TTSCCEEEETTSCCCCCSSCEE---EEETTEEEEEESS
T ss_pred CCcEEEEEECCEEeeeeeeeeE---EecCCeEEEEeCC
Confidence 3345789999999976554321 1234444455544
No 184
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=22.35 E-value=49 Score=30.49 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHhcccCCHHHHHHHHhhcCeeeecCC
Q psy7993 67 FEGRKEIWDALHAAASAAEGNDFQLAQAILDGANISVPNGF 107 (300)
Q Consensus 67 ~~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA~itlp~g~ 107 (300)
.....+||+||.+++++. .++|+.+-...|++.|...
T Consensus 241 ~~~~~~iw~Al~~~~~LF----~~la~~va~~~g~~yp~~~ 277 (287)
T 3jz0_A 241 RLDKVELFEAYKNSLLLV----MDLQSHLIEQYNLKVTHDI 277 (287)
T ss_dssp CSCHHHHHHHHHHHHHHH----HHHHHHHTTTSCCSSCHHH
T ss_pred cCCHHHHHHHHHHHHHHH----HHHHHHHHHHhCCCCCHHH
Confidence 344789999999999984 6789999999999888654
No 185
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=22.29 E-value=23 Score=27.93 Aligned_cols=58 Identities=9% Similarity=0.235 Sum_probs=39.7
Q ss_pred eEEEEEccCchHHHHHHHHHHHhC--CC-----CC----ceEEEEcC-eecCC------CCCcccccCCCCCCEEEE
Q psy7993 218 DVRMKVFTQETVAMIKKRLQSLEG--IE-----TS----KQRWYYGG-KLLSD------KMKISDIQNLASGFVIQV 276 (300)
Q Consensus 218 dv~VeV~~tdTV~~LK~kI~e~eG--Ip-----~~----qQRLiy~G-KiLkD------~~tL~dyqgIq~G~vI~v 276 (300)
-..|+|+++.|..++-..|.+... +. .. ...|++.+ ..|++ .++|.+. |+.+|..|+|
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eL-gl~~g~ei~V 81 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKEL-GLVDGQELAV 81 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGG-TCCTTCEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHh-CCCCCCEEEE
Confidence 456788999999999999998432 21 11 23444443 24543 4568887 9999999886
No 186
>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}
Probab=22.06 E-value=42 Score=24.26 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=23.9
Q ss_pred ccCCHHHHHHHHhhcCeeeec-------CCc-hhheccCCCccc
Q psy7993 85 EGNDFQLAQAILDGANISVPN-------GFL-TESYDELGNKYM 120 (300)
Q Consensus 85 ~~~d~~~Aq~il~aA~itlp~-------g~l-~~~yD~~G~~Y~ 120 (300)
+..|++.+.+-|.++|+++-. |.- .-++|-.|+.++
T Consensus 88 ~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie 131 (134)
T 3l7t_A 88 YVEDVEASRQELIALGIRVEEVRYDDYTGKKMAFFFDPDGLPLE 131 (134)
T ss_dssp ECSCHHHHHHHHHHHTCCCCCCEECTTSCCEEEEEECTTCCEEE
T ss_pred EECCHHHHHHHHHhCCCcccceeccCCCceEEEEEECCCCCEEE
Confidence 346888888888889988732 222 236777777544
No 187
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=21.69 E-value=71 Score=23.62 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=37.9
Q ss_pred CceEEEEEc--cCchHHHHHHHHHHHhCCC-CCceEEEEcCeecCCCCCcccccCCCCCCEEEEE
Q psy7993 216 CQDVRMKVF--TQETVAMIKKRLQSLEGIE-TSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277 (300)
Q Consensus 216 Gkdv~VeV~--~tdTV~~LK~kI~e~eGIp-~~qQRLiy~GKiLkD~~tL~dyqgIq~G~vI~vm 277 (300)
|+.+. +. .+.||.+|-+.+ |++ +...-+.++|.++.-. ...++ -+++|+.|-++
T Consensus 7 Ge~~e--~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~-~L~dGD~IEIv 63 (78)
T 2k5p_A 7 GKPST--VDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDAT-TVKDGDAVEFL 63 (78)
T ss_dssp TEEEE--CSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHC-EECSSBCEEEC
T ss_pred CEEEE--cCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcc-cCCCCCEEEEE
Confidence 56544 45 568999987754 777 7667789999998644 23333 67889988754
No 188
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=21.32 E-value=2.8e+02 Score=21.30 Aligned_cols=40 Identities=10% Similarity=0.085 Sum_probs=28.2
Q ss_pred ceEEEEEEecCCCc-eEEEEEc-cCchHHHHHHHHHHHhCCCC
Q psy7993 204 QEIALKLRLSNTCQ-DVRMKVF-TQETVAMIKKRLQSLEGIET 244 (300)
Q Consensus 204 ~~I~VkVRlS~~Gk-dv~VeV~-~tdTV~~LK~kI~e~eGIp~ 244 (300)
.+-.|..|... .+ --+|.++ ...+|.+||+.|.++.++-.
T Consensus 5 ~mS~V~YKFkS-~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~ 46 (86)
T 2c7h_A 5 SMSCVHYKFSS-KLNYDTVTFDGLHISLCDLKKQIMGREKLKA 46 (86)
T ss_dssp TBEEEEEEETT-CSSEEEEEESSSEEEHHHHHHHHHHHHTCCT
T ss_pred ceeEEEEEEee-cCCcceEEEcCCEEEHHHHHHHHHHHhCCCC
Confidence 44556666555 33 3446664 77899999999999988864
No 189
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=21.23 E-value=40 Score=26.44 Aligned_cols=30 Identities=17% Similarity=0.237 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhcccCCHHHHHHHHhhcCe
Q psy7993 69 GRKEIWDALHAAASAAEGNDFQLAQAILDGANI 101 (300)
Q Consensus 69 G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA~i 101 (300)
|.++.|.+|..||.. |+++..+.+|+..+.
T Consensus 1 G~~~~~~~l~~A~~~---g~~~~v~~ll~~~~~ 30 (179)
T 3f6q_A 1 GSPEFMDDIFTQCRE---GNAVAVRLWLDNTEN 30 (179)
T ss_dssp ------CCHHHHHHH---TCHHHHHHHHHCTTS
T ss_pred CCHHHHHHHHHHHHc---CCHHHHHHHHhcCcc
Confidence 778899999999875 999999999987554
No 190
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A {Plasmodium falciparum}
Probab=20.91 E-value=25 Score=32.74 Aligned_cols=23 Identities=26% Similarity=0.781 Sum_probs=20.0
Q ss_pred HhhhhhcccCCCCCCCHHHHHHHHHHHH
Q psy7993 55 SKRDEFWDTAPAFEGRKEIWDALHAAAS 82 (300)
Q Consensus 55 ~~R~eFwdT~p~~~G~~EiW~aL~aA~~ 82 (300)
+.|++||+.- |.+||.|+-=|+.
T Consensus 134 ~~Re~WW~~N-----r~~VWkam~C~~~ 156 (306)
T 2y8d_A 134 EKRKKWWDMN-----KYHIWESMLCGYR 156 (306)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred ccHHHHHHHh-----HHHHHHHhhhccc
Confidence 5799999998 9999999988753
No 191
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=20.32 E-value=28 Score=29.40 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHHhcccCCHHHHHHHHhhcCe--eeecCCchh-----heccCCC--ccccceeeech
Q psy7993 67 FEGRKEIWDALHAAASAAEGNDFQLAQAILDGANI--SVPNGFLTE-----SYDELGN--KYMVPVYCLSY 128 (300)
Q Consensus 67 ~~G~~EiW~aL~aA~~~~~~~d~~~Aq~il~aA~i--tlp~g~l~~-----~yD~~G~--~Y~lP~~v~~~ 128 (300)
+-|.+.|.-||. .+..=-..+|+.|+..||| ..--|+|+. .-+...+ .|.||.|.+|-
T Consensus 22 i~~~k~v~~ALt----~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~iP~w~lNR 88 (146)
T 3u5c_S 22 VDGNIKIVYALT----TIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKIPAWFLNR 88 (146)
T ss_dssp BCSSSCTTTTGG----GSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTCCSTTCTB
T ss_pred CCCCcchHhhHh----hhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCccHHHhhh
Confidence 344554444442 2233367899999999999 566788863 4444444 69999999973
No 192
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin sulphate A, membrane protein DBL, malaria; 3.00A {Plasmodium falciparum}
Probab=20.31 E-value=27 Score=32.51 Aligned_cols=23 Identities=26% Similarity=0.794 Sum_probs=19.9
Q ss_pred HhhhhhcccCCCCCCCHHHHHHHHHHHH
Q psy7993 55 SKRDEFWDTAPAFEGRKEIWDALHAAAS 82 (300)
Q Consensus 55 ~~R~eFwdT~p~~~G~~EiW~aL~aA~~ 82 (300)
+.|++||+.- |.+||.|+-=|+.
T Consensus 129 ~~Re~WW~~n-----r~~IWkam~C~~~ 151 (302)
T 2wau_A 129 EKRKKWWDMN-----KYHIWESMLSGYK 151 (302)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred ccHHHHHHHh-----hHhhhhhhccccc
Confidence 5799999998 9999999987753
Done!