RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7993
(300 letters)
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 49.4 bits (118), Expect = 8e-09
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 207 ALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQ 266
+L + + + + V + TV K+ + GI + QR Y GK+L D +
Sbjct: 1 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY- 59
Query: 267 NLASGFVIQVI 277
++ G + ++
Sbjct: 60 HIQDGHSVHLV 70
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 48.8 bits (116), Expect = 1e-08
Identities = 31/77 (40%), Positives = 53/77 (68%), Gaps = 2/77 (2%)
Query: 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKI 262
G E L+LRLS T +D+++ V + +TV +K+RL + EG+E QRW++ G+ L+DKMK
Sbjct: 1 GYECQLRLRLS-TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKF 59
Query: 263 SDIQNLASGFVIQVIIN 279
++ + +V+QVI++
Sbjct: 60 EEL-KIPKDYVVQVIVS 75
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 45.6 bits (108), Expect = 2e-07
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 202 GGQEIALKLR-LSNTCQDVRMKVFTQETVAMIKKRLQSLEG--IETSKQRWYYGGKLLSD 258
G + L ++ + +D+ + +V +K L + QR Y GKLL D
Sbjct: 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLD 63
Query: 259 KMKISDIQ-NLASGFVIQVIINNLAGP 284
+ D+ V+ ++ N +GP
Sbjct: 64 HQCLRDLLPKQEKRHVLHLVCNVKSGP 90
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 43.4 bits (102), Expect = 1e-06
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 215 TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVI 274
T + + ++V +T+ +K ++Q EGI +QR + GK L D +SD N+ +
Sbjct: 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTL 67
Query: 275 QVIINNLAG 283
+++ G
Sbjct: 68 HLVLRLRGG 76
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 42.2 bits (99), Expect = 3e-06
Identities = 9/66 (13%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 213 SNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGF 272
N+ ++V + ++ +K+ + +G+ + R + GK L + + + + +L
Sbjct: 9 FNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC-DLEQQS 67
Query: 273 VIQVII 278
++ ++
Sbjct: 68 IVHIVQ 73
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 42.1 bits (99), Expect = 3e-06
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 215 TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISD--IQN 267
Q V Q V K+ + + I + KQR Y G++L D K+ + +
Sbjct: 9 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGG 63
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 73
Score = 41.8 bits (98), Expect = 4e-06
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 215 TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVI 274
T +++ + + +T+ IK+R++ EGI +QR Y GK L+D D N+ G V+
Sbjct: 9 TGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY-NIEGGSVL 67
Query: 275 QVII 278
+++
Sbjct: 68 HLVL 71
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 41.8 bits (98), Expect = 6e-06
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 198 EEGVGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLS 257
E + GQ + L L+ + V++IK ++ G+ KQ+ Y G +
Sbjct: 16 EWKLNGQVLVFTLPLT-------------DQVSVIKVKIHEATGMPAGKQKLQYEGIFIK 62
Query: 258 DKMKISDIQNLASGFVIQVII 278
D ++ N+A+G VI + +
Sbjct: 63 DSNSLAYY-NMANGAVIHLAL 82
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A
(Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 41.4 bits (97), Expect = 6e-06
Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 221 MKVFTQETVAMIKKRLQSLEG---IETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVI 277
+++ ETV ++K+++++ +G + Q+ Y GK+LSD + I D + + V+
Sbjct: 17 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRD-YRIDEKNFVVVM 75
Query: 278 I 278
+
Sbjct: 76 V 76
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 41.8 bits (98), Expect = 6e-06
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 199 EGVGGQEIALKLRLSNTC--QDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLL 256
G GQ + LK++ SN Q + ++ TV +K L L + S+ Y +
Sbjct: 3 SGSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKM 62
Query: 257 SDKMKISDIQ-------NLASGFVIQVIINN 280
+ + ++ +G + V +
Sbjct: 63 PGREIELENDLQPLQFYSVENGDCLLVRWSG 93
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 39.8 bits (93), Expect = 3e-05
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISD 264
E + L++S+ ++ K+ + + + +G E R+ Y G + D
Sbjct: 2 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPED 61
Query: 265 IQNLASGFVIQVIINNLAG 283
++ +I+ + G
Sbjct: 62 -LDMEDNDIIEAHREQIGG 79
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 39.5 bits (92), Expect = 3e-05
Identities = 17/90 (18%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 189 DSPIEVFDLEEGVGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQR 248
D P+ + G+ ++RL+ +TVA +K+++ LEG++
Sbjct: 1 DEPLSIL--VRNNKGRSSTYEVRLT-------------QTVAHLKQQVSGLEGVQDDLFW 45
Query: 249 WYYGGKLLSDKMKISDIQNLASGFVIQVII 278
+ GK L D++ + + L + + +
Sbjct: 46 LTFEGKPLEDQLPLGEY-GLKPLSTVFMNL 74
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein,
OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 39.5 bits (92), Expect = 4e-05
Identities = 8/70 (11%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 215 TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVI 274
+ + +K++++ +G+ +Q+ + G++L D + + + +
Sbjct: 16 DGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTL 74
Query: 275 QVIINNLAGP 284
+ +GP
Sbjct: 75 ILSKKKGSGP 84
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 40.3 bits (94), Expect = 4e-05
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 9/98 (9%)
Query: 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKI 262
G+ +++ D+ V+ + + + R Y G+ L + +
Sbjct: 26 GKTKEFLFSPNDSASDIAKHVYDN-----WPMDWEEEQVSSPNILRLIYQGRFLHGNVTL 80
Query: 263 SDIQNLASGFVIQVIINNLAGPKLVPPVESMKSVTSSS 300
+ L G + +L + +P S + S
Sbjct: 81 GAL-KLPFGKTTVM---HLVARETLPEPNSQGQRSGPS 114
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 38.7 bits (90), Expect = 4e-05
Identities = 12/52 (23%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 227 ETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278
T+ +++R+ +L + QR +Y GK L + + D ++ +IQ+++
Sbjct: 23 ATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY-DVGLNDIIQLLV 73
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 39.1 bits (91), Expect = 7e-05
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 227 ETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISD 264
TV +K+ ++ + +QR Y +LL D + +
Sbjct: 21 STVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGE 58
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 38.3 bits (89), Expect = 9e-05
Identities = 9/58 (15%), Positives = 24/58 (41%)
Query: 221 MKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278
+ ++ V + + ++ + G+ S Q+ + GK L + + G + +I
Sbjct: 20 QQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 77
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 38.4 bits (89), Expect = 1e-04
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISD 264
E+ RL VR+K T +T+ +KK + + G +K + D + + D
Sbjct: 30 EVVCNDRLGKK---VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGD 86
Query: 265 --IQN 267
I +
Sbjct: 87 YEIHD 91
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 36.5 bits (84), Expect = 4e-04
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 225 TQETVAMIKKRLQSLEGIETSKQRWYY---GGKLLSDKMKISDIQNLASGFVIQVIINNL 281
+TV +K+ L++L G+ +Q+ GK + +K+ + L I ++
Sbjct: 26 EDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL-KLKPNTKIMMMGTRE 84
Query: 282 AGP 284
+GP
Sbjct: 85 SGP 87
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 36.9 bits (85), Expect = 4e-04
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 222 KVFTQE-----TVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQV 276
F+ + ++ + + G+ + + Y +LL+D L G ++ +
Sbjct: 22 VTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81
Query: 277 IINNLAGPKLVPPVES 292
+ + G + P +
Sbjct: 82 LQKDNVGLR--TPGRT 95
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 36.4 bits (84), Expect = 4e-04
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 208 LKLRLSNTCQDVRM--KVFTQETVAMIKKRLQSLEGIETSKQRWYYGGK-------LLSD 258
L ++ D M K ++ +KK+L+ + G R L
Sbjct: 5 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDG 64
Query: 259 KMKISDIQNLASGFVIQVI 277
+ D+ + G+ I +
Sbjct: 65 AKSLKDL-GVRDGYRIHAV 82
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 35.6 bits (82), Expect = 6e-04
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 223 VFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278
+ V +++++Q L +E QR +Y GK + D + D + IQ+++
Sbjct: 19 LSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY-EVRLNDTIQLLV 73
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 35.7 bits (82), Expect = 8e-04
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 7/98 (7%)
Query: 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMK 261
G I ++L+ N + ++TV +K + + S+ + Y G+LL D +
Sbjct: 4 GSSGINVRLKFLND-TEELAVARPEDTVGTLKSKYFPGQE---SQMKLIYQGRLLQDPAR 59
Query: 262 ISDIQNLASGFVIQVIINNLAGPKLVPPVESMKSVTSS 299
N+ + VI + P S S SS
Sbjct: 60 TLSSLNITNNCVIHCHRSP---PGAAVSGPSASSGPSS 94
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 35.7 bits (82), Expect = 9e-04
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 208 LKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQN 267
+K+ + + V +V K+ + +T + + GK+L D+ +
Sbjct: 33 IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQH-G 91
Query: 268 LASGFVIQVII 278
+ G + ++I
Sbjct: 92 IHDGLTVHLVI 102
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 35.3 bits (81), Expect = 0.001
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 221 MKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278
+ V KK++ + + GK+L D+ +S + G + V++
Sbjct: 24 FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVHVVV 80
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 35.4 bits (81), Expect = 0.001
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 223 VFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278
V T+ +K+ + + + GK+L D ++ + G + ++I
Sbjct: 23 VTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVI 77
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 33.6 bits (77), Expect = 0.003
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 204 QEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKIS 263
+ I LK+ ++ KV + +K+ +G+ + R+ + G+ ++D
Sbjct: 1 EYIKLKVI-GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPK 59
Query: 264 DIQNLASGFVIQVII 278
+ + VI+V
Sbjct: 60 E-LGMEEEDVIEVYQ 73
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 33.3 bits (76), Expect = 0.004
Identities = 11/64 (17%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 217 QDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYY--GGKLLSDKMKISDIQNLASGFVI 274
+ ++ + + +V+ +K ++ G+ +QR G L D++ ++ Q L G +
Sbjct: 11 NEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS-QGLGPGSTV 69
Query: 275 QVII 278
+++
Sbjct: 70 LLVV 73
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 33.9 bits (77), Expect = 0.004
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 203 GQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKI 262
Q + + T + ++ K+ +++ + + Q+ Y GK+L+D +
Sbjct: 10 QQTFKIDIDPEETVKALKEKIESEKGK----------DAFPVAGQKLIYAGKILNDDTAL 59
Query: 263 SDIQNLASGFVIQVIINNLAGPKLVPP 289
+ + + V++ P
Sbjct: 60 KEY-KIDEKNFVVVMVTKPKAVSTPAP 85
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 33.3 bits (76), Expect = 0.006
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 202 GGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGK------- 254
G + + + S + T+A K +L+ + G S G
Sbjct: 4 GSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSK 63
Query: 255 LLSDKMKISDIQNLASGFVIQVIINNLAGP 284
L + + + G I VI ++ +GP
Sbjct: 64 LDQEDALLGSY-PVDDGCRIHVIDHSGSGP 92
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 32.9 bits (75), Expect = 0.010
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 227 ETVAMIKKRL--QSLEGI-ETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVII 278
+++ +K+ + + E + + Y G+ L D + + G + V+
Sbjct: 38 YSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY-GIQPGSTVHVLR 91
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 32.2 bits (73), Expect = 0.016
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 199 EGVGGQEIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSL-----EGIETS--KQRWYY 251
E ++ +K RL++ TV+ +K+ + S E + + +
Sbjct: 1 EAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS 60
Query: 252 GGKLLSDKMKISD 264
GK+L + + D
Sbjct: 61 AGKVLENSKTVKD 73
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 31.1 bits (70), Expect = 0.038
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 223 VFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISDIQNLASGFVIQVIINNLA 282
+ T E + K +L +L G++ ++Q+ G L D +I + +G + ++ + A
Sbjct: 24 LNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI-KMKNGMTVLMMGSADA 81
Query: 283 GPKLVPPVESMKSVTS 298
P+ P +S
Sbjct: 82 LPE--EPSAKTSGPSS 95
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 73
Score = 29.3 bits (65), Expect = 0.12
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 205 EIALKLRLSNTCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRWYYGGKLLSDKMKISD 264
E+ + RL VR+K +++V KK L G + +K GG +L D + + D
Sbjct: 3 EVVVNDRLGKK---VRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLED 59
Query: 265 IQNLASGFVIQ 275
+ ++
Sbjct: 60 Y-EVHDQTNLE 69
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 29.3 bits (65), Expect = 0.18
Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 15/79 (18%)
Query: 215 TCQDVRMKVFTQETVAMIKKRLQSLEGIETSKQRW---------------YYGGKLLSDK 259
+ + + V TV +KK +Q ++ ++ G+ L++
Sbjct: 16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTED 75
Query: 260 MKISDIQNLASGFVIQVII 278
K + + + I
Sbjct: 76 RKKLRDYGIRNRDEVSFIK 94
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase
alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId:
47881]}
Length = 62
Score = 26.6 bits (59), Expect = 0.73
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 221 MKVFTQETVAMIKKRLQSLEGI--ETSKQRWYYGGKLLSDK 259
+ + +++ + E S + G+ L D
Sbjct: 20 SAGLLRVISEATGEPRENIFFVIREGSGINFVEHGEHLPDY 60
>d1pjqa3 e.37.1.1 (A:114-215) Siroheme synthase CysG, domains 2
and 3 {Salmonella typhimurium [TaxId: 90371]}
Length = 102
Score = 26.4 bits (58), Expect = 1.7
Identities = 6/48 (12%), Positives = 11/48 (22%), Gaps = 3/48 (6%)
Query: 53 LRSKRDEFWDTAPAFEGRKEIWDAL---HAAASAAEGNDFQLAQAILD 97
R R+ W+ A + D + A +
Sbjct: 45 AGQLRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTE 92
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex
aeolicus [TaxId: 63363]}
Length = 101
Score = 24.6 bits (53), Expect = 8.3
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 140 LRHVLVCAN 148
+HV VC
Sbjct: 1 FKHVFVCVQ 9
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,129,047
Number of extensions: 52345
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 38
Length of query: 300
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,240,546
Effective search space: 266717390
Effective search space used: 266717390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)