RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7994
(230 letters)
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 253 bits (648), Expect = 3e-85
Identities = 111/237 (46%), Positives = 144/237 (60%), Gaps = 10/237 (4%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQK---------LDILDKNS 51
VTG NKGIG IV+ L + F G + LTARD +RGQ A+++LQ LDI D S
Sbjct: 9 VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQS 68
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLL 111
I+AL D L E+GG+DVLVNNA IAFKV PF QA TM+TN+F DVC L PL+
Sbjct: 69 IRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLI 128
Query: 112 RSHGRVVNVSSSCGHLCHVT-SEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGW 170
+ GRVVNVSS + S L++K E + EEL LMN+FVE + G H K GW
Sbjct: 129 KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGW 188
Query: 171 PNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSGKGPLTIDQ 227
P+SAY TK+GVT LS + LS+ + +++N PG+V TDM+ K + ++
Sbjct: 189 PSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEE 245
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 198 bits (504), Expect = 3e-63
Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 53/273 (19%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ----------KLDILDKN 50
VTG NKGIG+ I K L ++ LT RD ++G EA+EKL+ +LD+ D
Sbjct: 17 VTGGNKGIGFEICKQLSSN-GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPI 75
Query: 51 -SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH------------------ 91
++ +L D ++ G +D+LVNNA +A ++ F +
Sbjct: 76 ATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQ 135
Query: 92 ------------TMRTNYFALIDVCDILFPLLR--SHGRVVNVSSSCGHLCHVTSEALKK 137
++ NY + V ++L PLL+ R+VNVSSS G L +V++E +
Sbjct: 136 ELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALE 195
Query: 138 KLLH-EIKSVEELSALMNEFVELAQDGSHTKGGWPN--SAYAATKLGVTKLSFLQHALLS 194
L + + E + ++N ++ ++ GWP+ +AY +K + + + +
Sbjct: 196 ILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRVLANKI- 254
Query: 195 QDAIREDLVVNCVHPGYVNTDMSSGKGPLTIDQ 227
VNCV PG V T+M+ G G T ++
Sbjct: 255 -----PKFQVNCVCPGLVKTEMNYGIGNYTAEE 282
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 135 bits (342), Expect = 2e-39
Identities = 53/250 (21%), Positives = 93/250 (37%), Gaps = 60/250 (24%)
Query: 1 VTGANKGIGYGIVKGLIQQ-FDGIIYLTARDASRGQEALE------KLQKLDILDKNSIK 53
VTGAN+GIG G+V+ L++ I TARD + E + L + S+
Sbjct: 8 VTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLD 67
Query: 54 ALHDHLEAEHG--GVDVLVNNAAIAFKVNS-SEPFGSQALHTMRTNYFALIDVCDILFPL 110
+ G G+ +L+NNA + + +EP + + N +++ + L PL
Sbjct: 68 TFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPL 127
Query: 111 LR-------------SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFV 157
L+ S V+ +SS G S+
Sbjct: 128 LKNAASKESGDQLSVSRAAVITISSGLG-------------------SIT---------- 158
Query: 158 ELAQDGSHTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMS 217
D + +P AY +K + L+ D ++++V PG+V T++
Sbjct: 159 ----DNTSGSAQFPVLAYRMSKAAINMFG----RTLAVDLKDDNVLVVNFCPGWVQTNLG 210
Query: 218 SGKGPLTIDQ 227
LT++Q
Sbjct: 211 GKNAALTVEQ 220
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 123 bits (310), Expect = 1e-34
Identities = 57/253 (22%), Positives = 97/253 (38%), Gaps = 67/253 (26%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG--IIYLTARDASRGQEALE--------KLQKLDILDKN 50
+TG N+G+G G+VK L+ ++ T R+ + +E + + ++D+ + +
Sbjct: 26 ITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFD 85
Query: 51 SIKALHDHLEAEHG--GVDVLVNNAAIAFKVNSSEPFGSQAL-HTMRTNYFALIDVCDIL 107
+ L +E G++VL NNA IA K SQ L T++TN I +
Sbjct: 86 AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKAC 145
Query: 108 FPLLR-------------SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMN 154
PLL+ ++N+SS G S++
Sbjct: 146 LPLLKKAAKANESQPMGVGRAAIINMSSILG-------------------SIQG------ 180
Query: 155 EFVELAQDGSHTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNT 214
+T GG AY +K + + LS D + ++ +HPG+V T
Sbjct: 181 ----------NTDGGMY--AYRTSKSALNAAT----KSLSVDLYPQRIMCVSLHPGWVKT 224
Query: 215 DMSSGKGPLTIDQ 227
DM PL +
Sbjct: 225 DMGGSSAPLDVPT 237
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 100 bits (250), Expect = 7e-26
Identities = 43/223 (19%), Positives = 66/223 (29%), Gaps = 37/223 (16%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIK-ALHDHL 59
++G GIG K L I+ + D+ K A+ D L
Sbjct: 6 ISGCATGIGAATRKVLEAAGHQIV-GIDIRDAEVIA--------DLSTAEGRKQAIADVL 56
Query: 60 EAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLR--SHGRV 117
G+D LV A + P + + NYF ++ D P L+
Sbjct: 57 AKCSKGMDGLVLCAGLG-------PQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAA 109
Query: 118 VNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNSAYAA 177
V +SS L L E + H N AYA
Sbjct: 110 VVISSVASAHLAFDKNPLALALEA------------GEEAKARAIVEHAGEQGGNLAYAG 157
Query: 178 TKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDMSSG 219
+K +T + A + +R +N + PG T +
Sbjct: 158 SKNALTVAV-RKRAAAWGEAGVR----LNTIAPGATETPLLQA 195
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 95.7 bits (239), Expect = 2e-24
Identities = 39/235 (16%), Positives = 69/235 (29%), Gaps = 70/235 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
VTGA G+G + GL+++ G + + R R Q+ L D+ +
Sbjct: 8 VTGAGSGLGRALTIGLVER--GHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVD 65
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFP 109
G +++++ A P G M +N + I V
Sbjct: 66 VAFAAAVEWGGLPELVLHCAGTG----EFGPVGVYTAEQIRRVMESNLVSTILVAQQTVR 121
Query: 110 LLRSH-GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
L+ G + NV SS +
Sbjct: 122 LIGERGGVLANVLSSAAQV----------------------------------------- 140
Query: 169 GWPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSG 219
G N S Y A+K G+ +L L +R + ++P + ++
Sbjct: 141 GKANESLYCASKWGMRGFL---ESLRAELKDSPLR----LVNLYPSGIRSEFWDN 188
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 94.5 bits (236), Expect = 9e-24
Identities = 51/244 (20%), Positives = 75/244 (30%), Gaps = 67/244 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
V G G+G V+ L++ G + LT R+ S E+ + DI D N I
Sbjct: 13 VIGGTHGMGLATVRRLVEG--GAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIA 70
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFP 109
L G +D+L NA ++ EPF + N L P
Sbjct: 71 VLGAAAGQTLGAIDLLHINAGVS----ELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTP 126
Query: 110 LLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGG 169
L+R G +V SS G
Sbjct: 127 LIREGGSIVFTSSVADE----------------------------------------GGH 146
Query: 170 WPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSGKGPLTID 226
S Y+A+K + + L L IR VN V PG+++T G +
Sbjct: 147 PGMSVYSASKAALVSFA---SVLAAELLPRGIR----VNSVSPGFIDTPTKGVAGITEAE 199
Query: 227 QDNI 230
+
Sbjct: 200 RAEF 203
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 91.8 bits (229), Expect = 7e-23
Identities = 51/234 (21%), Positives = 80/234 (34%), Gaps = 72/234 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ----KLDILDKNSIKALH 56
VTGA G+G IVK L + I+Y R+ E + DI+ + +
Sbjct: 10 VTGATGGMGIEIVKDLSRD--HIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGV 67
Query: 57 DHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFPLLR 112
D L+ VD LV+ AA+A + ++ + N ++ L P LR
Sbjct: 68 DKLK-NLDHVDTLVHAAAVAR----DTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALR 122
Query: 113 S-HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWP 171
+ G V+ ++S G+ P
Sbjct: 123 AASGCVIYINSGAGNG-----------------------------------------PHP 141
Query: 172 NSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNTDMSSG 219
+ YAA+K + L+ DA R++ V+ V PG NT M G
Sbjct: 142 GNTIYAASKHALRGLA---------DAFRKEEANNGIRVSTVSPGPTNTPMLQG 186
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 92.6 bits (231), Expect = 7e-23
Identities = 48/243 (19%), Positives = 73/243 (30%), Gaps = 69/243 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
+TGA GIG K + + G +++T R A+ ++ + D + +
Sbjct: 34 ITGATSGIGLAAAKRFVAE--GARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELD 91
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFP 109
L++ ++AE G +DVL NA S P G T N ++ P
Sbjct: 92 RLYEKVKAEAGRIDVLFVNAGGG----SMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALP 147
Query: 110 LLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGG 169
LL VV S+ G G
Sbjct: 148 LLARGSSVVLTGSTAGST-----------------------------------------G 166
Query: 170 WPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSGKGPLTI 225
P S YAA+K + + L IR +N + PG T
Sbjct: 167 TPAFSVYAASKAALRSFA---RNWILDLKDRGIR----INTLSPGPTETTGLVELAGKDP 219
Query: 226 DQD 228
Q
Sbjct: 220 VQQ 222
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 90.8 bits (226), Expect = 3e-22
Identities = 41/244 (16%), Positives = 70/244 (28%), Gaps = 81/244 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
+TGA GIG + + L + +E K + +D ++
Sbjct: 36 ITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNRE 93
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH----TMRTNYFALIDVCDI 106
I + ++AE G V +LVNNA + + + T N A
Sbjct: 94 DIYSSAKKVKAEIGDVSILVNNAGVV----YTSDLFATQDPQIEKTFEVNVLAHFWTTKA 149
Query: 107 LFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
P + +HG +V V+S+ GH+
Sbjct: 150 FLPAMTKNNHGHIVTVASAAGHV------------------------------------- 172
Query: 165 HTKGGWPN-SAYAATKLGVTKLSFLQHALLSQDAIREDLV--------VNCVHPGYVNTD 215
P AY ++K + ++L C+ P +VNT
Sbjct: 173 ----SVPFLLAYCSSKFAAVGFH---------KTLTDELAALQITGVKTTCLCPNFVNTG 219
Query: 216 MSSG 219
Sbjct: 220 FIKN 223
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 90.4 bits (225), Expect = 3e-22
Identities = 49/225 (21%), Positives = 80/225 (35%), Gaps = 55/225 (24%)
Query: 1 VTGANKGIGYGIVKGLIQQ-FDGIIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
VTG ++GIG IV L D ++Y AR + ++ EK DI + + +K
Sbjct: 7 VTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLK 66
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL-HTMRTNYFALIDVCDILFPLLR 112
L + HG +D LV NA + V + A N+F+++ + I P L+
Sbjct: 67 QLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELK 126
Query: 113 -SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWP 171
++G VV VSS +
Sbjct: 127 KTNGNVVFVSSDACN----------------------------------------MYFSS 146
Query: 172 NSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
AY ++K + + + ++ V PG V+TDM
Sbjct: 147 WGAYGSSKAALNHFA--MTLANEERQVK----AIAVAPGIVDTDM 185
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 89.1 bits (222), Expect = 1e-21
Identities = 56/239 (23%), Positives = 87/239 (36%), Gaps = 73/239 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL---------DILDKN 50
VTG +KGIGY IV+ L G +Y +R+ E LE ++ D+L +
Sbjct: 26 VTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT 83
Query: 51 SIKALHDHLEAEHGG-VDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFP 109
L + G +++LVNNA + + + M TN+ A + I +P
Sbjct: 84 ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYP 143
Query: 110 LL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
LL +G V+ +SS G
Sbjct: 144 LLKASQNGNVIFLSSIAGFS---------------------------------------- 163
Query: 168 GGWPN-SAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSG 219
P+ S Y+A+K + TK +L ++D IR VN V PG + T +
Sbjct: 164 -ALPSVSLYSASKGAINQMTK------SLACEWAKDNIR----VNSVAPGVILTPLVET 211
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 87.9 bits (219), Expect = 3e-21
Identities = 52/236 (22%), Positives = 83/236 (35%), Gaps = 71/236 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL---------DILDKN 50
VTG ++GIGYGIV+ L G +Y +R+ + L + + D+ ++
Sbjct: 14 VTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRS 71
Query: 51 SIKALHDHLEAE-HGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFP 109
+ L + + HG +++LVNNA I + + M N+ A + + P
Sbjct: 72 ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHP 131
Query: 110 LL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
L G VV +SS G L
Sbjct: 132 FLKASERGNVVFISSVSGAL---------------------------------------- 151
Query: 168 GGWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMS 217
+ Y ATK + T+ L ++D IR VN V PG + T +
Sbjct: 152 AVPYEAVYGATKGAMDQLTR------CLAFEWAKDNIR----VNGVGPGVIATSLV 197
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 88.1 bits (219), Expect = 4e-21
Identities = 42/237 (17%), Positives = 79/237 (33%), Gaps = 72/237 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL----------DILDK 49
VTGA+KGIG + L + G + +TAR Q+ + +L + D
Sbjct: 33 VTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDM 90
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFP 109
+ GG+D+L+ N +N +M N+ + + + P
Sbjct: 91 TFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALP 150
Query: 110 LL-RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
+L +S+G +V VSS G +
Sbjct: 151 MLKQSNGSIVVVSSLAGKV----------------------------------------- 169
Query: 169 GWPN-SAYAATKLGVTKLSFLQHALLSQDAIREDLV-------VNCVHPGYVNTDMS 217
+P +AY+A+K + +IR++ + G ++T+ +
Sbjct: 170 AYPMVAAYSASKFALDGFF---------SSIRKEYSVSRVNVSITLCVLGLIDTETA 217
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 87.6 bits (218), Expect = 5e-21
Identities = 47/242 (19%), Positives = 81/242 (33%), Gaps = 69/242 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL------------DIL 47
+TG++ GIG ++ G + +T R A R +E +++ D+
Sbjct: 11 ITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDV 103
+ + G +D+LVNNA A + S+ +Q++ T+ N ++I +
Sbjct: 69 TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIAL 128
Query: 104 CDILFPLLR-SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
P L + G +VN+SS L
Sbjct: 129 TKKAVPHLSSTKGEIVNISSIASGL----------------------------------- 153
Query: 163 GSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
Y+ K + T+ + + Q IR VN + PG V T S
Sbjct: 154 ----HATPDFPYYSIAKAAIDQYTRNTAIDLI---QHGIR----VNSISPGLVATGFGSA 202
Query: 220 KG 221
G
Sbjct: 203 MG 204
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 86.0 bits (214), Expect = 1e-20
Identities = 51/237 (21%), Positives = 74/237 (31%), Gaps = 74/237 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI-IYLTARDASRGQEALEKLQK-----LDILDKNSIKA 54
+TGA++GIG + L + G + L ARD R Q +L+ D+ ++
Sbjct: 10 ITGASRGIGEATARLLHAK--GYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWAR 67
Query: 55 LHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL---HTM-RTNYFALIDVCDILFPL 110
+E G + LVNNA + +P L + TN P
Sbjct: 68 AVAAMEEAFGELSALVNNAGVGV----MKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPA 123
Query: 111 L--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
L R G +VNV S G
Sbjct: 124 LLRRGGGTIVNVGSLAGK-----------------------------------------N 142
Query: 169 GWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNTDMSSG 219
+ A Y A+K G+ L+ A DL V V PG V+T +
Sbjct: 143 PFKGGAAYNASKFGLLGLA---------GAAMLDLREANVRVVNVLPGSVDTGFAGN 190
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 85.7 bits (213), Expect = 2e-20
Identities = 48/234 (20%), Positives = 81/234 (34%), Gaps = 69/234 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL----------DILDK 49
+TG++ GIG I +G ++ G I L AR R EA L++ D+
Sbjct: 12 ITGSSSGIGLAIAEGFAKE--GAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATP 69
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQA-LHTMRTNYFALIDVCDILF 108
+ A+ + + + GG D+LVNNA + + A + + L
Sbjct: 70 EGVDAVVESVRSSFGGADILVNNAGT-GSNETIMEAADEKWQFYWELLVMAAVRLARGLV 128
Query: 109 PLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
P + R G +++ +S C
Sbjct: 129 PGMRARGGGAIIHNASICAV---------------------------------------- 148
Query: 167 KGGWPNSAYAATK---LGVTK-LSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+ W Y TK + +K L+ + +D IR VNC++PG + T
Sbjct: 149 QPLWYEPIYNVTKAALMMFSKTLA----TEVIKDNIR----VNCINPGLILTPD 194
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 84.5 bits (210), Expect = 2e-20
Identities = 37/229 (16%), Positives = 65/229 (28%), Gaps = 75/229 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----KLDILDKNSIKAL 55
+TGA G+G + G + L+ R A E ++ D+ D+ KAL
Sbjct: 5 ITGATGGLGGAFA----RALKGHDLLLSGRRAGALAELAREVGARALPADLADELEAKAL 60
Query: 56 HDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLL--RS 113
E G +D+LV+ A + + E + + V +
Sbjct: 61 ----LEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFV----LKHARFQK 112
Query: 114 HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPN- 172
R V + ++ P
Sbjct: 113 GARAVFFGAYPRYV-----------------------------------------QVPGF 131
Query: 173 SAYAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNTDM 216
+AYAA K + +A R++L+ + V V T +
Sbjct: 132 AAYAAAKGALEAYL---------EAARKELLREGVHLVLVRLPAVATGL 171
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 85.4 bits (212), Expect = 2e-20
Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 55/227 (24%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHL 59
V G + +G +VK + + + + + IK++ + +
Sbjct: 27 VLGGSGALGAEVVKFFKSK--SWNTISIDFRENPNADHS---FTIKDSGEEEIKSVIEKI 81
Query: 60 EAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDILFPLLRSHGRVV 118
++ VD V A N+S +++ + N ++ I LL G V
Sbjct: 82 NSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFV 141
Query: 119 NVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNSAYAAT 178
+S AY AT
Sbjct: 142 LTGASAAL----------------------------------------NRTSGMIAYGAT 161
Query: 179 KLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
K K ++ L + P ++T +
Sbjct: 162 KAATHHIIKDLASENGGLPAG-ST----SLGILPVTLDTPTNRKYMS 203
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 85.3 bits (212), Expect = 2e-20
Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 84/244 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ------------KLDILD 48
+TGA++GIG I GL ++ L AR ++ +++ LDI D
Sbjct: 12 ITGASQGIGAVIAAGLATDGYRVV-LIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD 70
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT------MRTNYFALID 102
+ ++G VD+LVN AA+ GS + M N A
Sbjct: 71 CTKADTEIKDIHQKYGAVDILVNAAAMF-------MDGSLSEPVDNFRKIMEINVIAQYG 123
Query: 103 VCDILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELA 160
+ + ++ + +G + NV+S
Sbjct: 124 ILKTVTEIMKVQKNGYIFNVASRAAKY--------------------------------- 150
Query: 161 QDGSHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNT 214
G+ + Y +TK + L+ +++ +L V + PG+VNT
Sbjct: 151 --------GFADGGIYGSTKFALLGLA---------ESLYRELAPLGIRVTTLCPGWVNT 193
Query: 215 DMSS 218
DM+
Sbjct: 194 DMAK 197
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 84.9 bits (211), Expect = 5e-20
Identities = 50/235 (21%), Positives = 82/235 (34%), Gaps = 62/235 (26%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL--------DILDKNS 51
VTG ++GIG I +GL++ G +++ ARDA + +L D+ +
Sbjct: 34 VTGGSRGIGQMIAQGLLEA--GARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAG 91
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT-MRTNYFALIDVCDILFPL 110
+ L L +D+LVNNA + + E + M+ N ++ L PL
Sbjct: 92 ARRLAQALGELSARLDILVNNAGTS-WGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPL 150
Query: 111 LRSH------GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
LR RV+N+ S G
Sbjct: 151 LRRSASAENPARVINIGSVAG--------------------------------------- 171
Query: 165 HTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
+ G AY +K + +LS + L + I VN + PG + M+
Sbjct: 172 ISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHIN----VNVIAPGRFPSRMTRH 222
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 84.5 bits (210), Expect = 5e-20
Identities = 52/249 (20%), Positives = 85/249 (34%), Gaps = 81/249 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
+TG +G+G + + G + L G +L Q LD+ + +
Sbjct: 10 ITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQ 67
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------C 104
+ + E G VD LVNNA I+ L T F ++++
Sbjct: 68 RVVAYAREEFGSVDGLVNNAGIS---------TGMFLETESVERFRKVVEINLTGVFIGM 118
Query: 105 DILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
+ P ++ G +VN+SS+ G +
Sbjct: 119 KTVIPAMKDAGGGSIVNISSAAGLM----------------------------------- 143
Query: 163 GSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSS 218
G S+Y A+K GV +KL+ ++ D IR VN VHPG T M++
Sbjct: 144 ------GLALTSSYGASKWGVRGLSKLAAVELG---TDRIR----VNSVHPGMTYTPMTA 190
Query: 219 GKGPLTIDQ 227
G +
Sbjct: 191 ETGIRQGEG 199
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 84.3 bits (209), Expect = 8e-20
Identities = 41/242 (16%), Positives = 72/242 (29%), Gaps = 72/242 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG--IIYLTARDASRGQEALEKLQK-----------LDIL 47
+TGA++G G + L + ++ ++AR S ++ E+L D+
Sbjct: 11 LTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLG 70
Query: 48 DKNSIKALHDHLEA----EHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFA 99
+ ++ L + E +L+NNAA V S L + N +
Sbjct: 71 TEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDV-SKGFLNVNDLAEVNNYWALNLTS 129
Query: 100 LIDVCDILFPLLR----SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNE 155
++ + + VVN+SS C
Sbjct: 130 MLCLTSGTLNAFQDSPGLSKTVVNISSLCAL----------------------------- 160
Query: 156 FVELAQDGSHTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
GW Y A K Q + ++R V PG ++ D
Sbjct: 161 ---------QPYKGW--GLYCAGKAAR--DMLYQVLAAEEPSVR----VLSYAPGPLDND 203
Query: 216 MS 217
M
Sbjct: 204 MQ 205
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 83.7 bits (208), Expect = 8e-20
Identities = 53/241 (21%), Positives = 88/241 (36%), Gaps = 82/241 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ--------KLDILDKNS 51
+TG GIG I +++ G + +T R + G++A + + + D D++
Sbjct: 11 ITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDG 68
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------- 103
L D E G V LVNNA IA ++++ T + L+ V
Sbjct: 69 WTKLFDATEKAFGPVSTLVNNAGIA---------VNKSVEETTTAEWRKLLAVNLDGVFF 119
Query: 104 -CDILFPLLRSHGR---VVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVEL 159
+ +++ G ++N+SS G +
Sbjct: 120 GTRLGIQRMKNKGLGASIINMSSIEGFV-------------------------------- 147
Query: 160 AQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
G P+ AY A+K V +K + L A L +R VN VHPGY+ T
Sbjct: 148 ---------GDPSLGAYNASKGAVRIMSKSAALDCA-LKDYDVR----VNTVHPGYIKTP 193
Query: 216 M 216
+
Sbjct: 194 L 194
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 84.2 bits (209), Expect = 1e-19
Identities = 51/232 (21%), Positives = 77/232 (33%), Gaps = 65/232 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ------KLDILDKNSIKA 54
VTGA+ G G I + + D + TAR + + LD+ D I
Sbjct: 10 VTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDV 68
Query: 55 LHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLRS- 113
+ + A +G VDVLVNNA E + + F + L P +R
Sbjct: 69 VAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER 128
Query: 114 -HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWP- 171
G VVN+SS G L +
Sbjct: 129 GSGSVVNISSFGGQL-----------------------------------------SFAG 147
Query: 172 NSAYAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNTDMSS 218
SAY+ATK + +LS + + +++ V V PG T++
Sbjct: 148 FSAYSATKAALEQLS---------EGLADEVAPFGIKVLIVEPGAFRTNLFG 190
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 83.8 bits (208), Expect = 1e-19
Identities = 45/237 (18%), Positives = 74/237 (31%), Gaps = 74/237 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ-----------KLDILD 48
VTG + GIG V+ L++ G + ARD R + A L+ D+LD
Sbjct: 13 VTGGSSGIGLATVELLLEA--GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD 70
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVC 104
++A + E G +LVNNA F ++ +F++I
Sbjct: 71 ALQVRAFAEACERTLGCASILVNNAGQG----RVSTFAETTDEAWSEELQLKFFSVIHPV 126
Query: 105 DILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
P L R+ +V V+S
Sbjct: 127 RAFLPQLESRADAAIVCVNSLLAS------------------------------------ 150
Query: 163 GSHTKGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
+ A +A + GV L ++ + +R VN + G V +
Sbjct: 151 ----QPEPHMVATSAARAGVKNLV---RSMAFEFAPKGVR----VNGILIGLVESGQ 196
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 83.3 bits (207), Expect = 1e-19
Identities = 58/233 (24%), Positives = 81/233 (34%), Gaps = 75/233 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQK-----LDILDKNSIKA 54
VTGA KGIG G V+ L G + +R + + + +D+ D + +
Sbjct: 12 VTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATER 69
Query: 55 LHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFPL 110
G VD+LVNNAA+A +PF + N A+I V I+
Sbjct: 70 A----LGSVGPVDLLVNNAAVALL----QPFLEVTKEAFDRSFEVNLRAVIQVSQIVARG 121
Query: 111 LRSH---GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
L + G +VNVSS C
Sbjct: 122 LIARGVPGAIVNVSSQCSQR---------------------------------------- 141
Query: 168 GGWPNSAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDM 216
+S Y +TK + TK+ AL L IR VN V+P V T M
Sbjct: 142 AVTNHSVYCSTKGALDMLTKVM----ALELGPHKIR----VNAVNPTVVMTSM 186
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 83.0 bits (206), Expect = 2e-19
Identities = 46/238 (19%), Positives = 71/238 (29%), Gaps = 73/238 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQK------------LDIL 47
VTGA +GIG + G + L R + E ++++ L+
Sbjct: 19 VTGAARGIGAAAARAYAAH--GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENA 76
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDV 103
+ L +E E G +D L++NA+I + P M N A +
Sbjct: 77 TAQQYRELAARVEHEFGRLDGLLHNASI-IGPRT--PLEQLPDEDFMQVMHVNVNATFML 133
Query: 104 CDILFPLLR--SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQ 161
L PLL+ + SSS G
Sbjct: 134 TRALLPLLKRSEDASIAFTSSSVGRKG--------------------------------- 160
Query: 162 DGSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+ W AY +K + L L A+R N ++PG T M
Sbjct: 161 -----RANW--GAYGVSKFATEGLMQT--LADELEGVTAVR----ANSINPGATRTGM 205
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 83.3 bits (207), Expect = 2e-19
Identities = 49/240 (20%), Positives = 78/240 (32%), Gaps = 79/240 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTG KGIG+ IV+ G +I+ AR+ E L K Q D +
Sbjct: 19 VTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP 76
Query: 51 SIKALHDHLEAEHGG-VDVLVNNAAIAFKVN----SSEPFGSQALHTMRTNYFALIDVCD 105
+ L + + GG +D+L+NN ++E F + TN + +
Sbjct: 77 EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSF----HISTNLESAYHLSQ 132
Query: 106 ILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
+ PLL G ++ +SS G +
Sbjct: 133 LAHPLLKASGCGNIIFMSSIAGVV------------------------------------ 156
Query: 164 SHTKGGWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMS 217
S Y+ATK + + L + D IR N V P + T ++
Sbjct: 157 ----SASVGSIYSATKGALNQLAR------NLACEWASDGIR----ANAVAPAVIATPLA 202
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 82.6 bits (205), Expect = 2e-19
Identities = 45/224 (20%), Positives = 72/224 (32%), Gaps = 63/224 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHLE 60
VTG +KGIG +V+ L+Q + + S E L+ ++ D+ + I + D
Sbjct: 9 VTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFIK-ADLTKQQDITNVLD--I 65
Query: 61 AEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFPLLRSHGR 116
++ D + NA I + + N ++ I L L+
Sbjct: 66 IKNVSFDGIFLNAGIL----IKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGAS 121
Query: 117 VVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPN-SAY 175
+V S + PN AY
Sbjct: 122 IVFNGSDQCFI-----------------------------------------AKPNSFAY 140
Query: 176 AATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+K + TK L A + IR VN V PG V+TD+
Sbjct: 141 TLSKGAIAQMTKSLALDLA---KYQIR----VNTVCPGTVDTDL 177
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 83.0 bits (206), Expect = 2e-19
Identities = 41/231 (17%), Positives = 70/231 (30%), Gaps = 64/231 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL---------DILDKN 50
++G +G + + +Q G + L AR R ++ +++ DI D
Sbjct: 16 ISGVGPALGTTLARRCAEQ--GADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDA 73
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDILFP 109
+ L D +G VDV++NNA + + + + F + + P
Sbjct: 74 QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTP 133
Query: 110 LLR-SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
L S G VVNV+S
Sbjct: 134 ALEESKGAVVNVNSMVVR----------------------------------------HS 153
Query: 169 GWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
AY K + ++ + + IR VN V PGY+
Sbjct: 154 QAKYGAYKMAKSALLAMSQTLATELG---EKGIR----VNSVLPGYIWGGT 197
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 82.5 bits (205), Expect = 3e-19
Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 71/235 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKL---------DILDKNS 51
VTG+ +G+G+ +GL +I L A+ E+++ L + D+ D+ +
Sbjct: 14 VTGSARGLGFAYAEGLAAAGARVI-LNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELA 72
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT-MRTNYFALIDVCDILFPL 110
I+A L+AE VD+L+NNA I + + TN + V
Sbjct: 73 IEAAFSKLDAEGIHVDILINNAGIQ-YRKPMVELELENWQKVIDTNLTSAFLVSRSAAKR 131
Query: 111 L---RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
+ S G+++N+ S
Sbjct: 132 MIARNSGGKIINIGSLTSQA---------------------------------------- 151
Query: 168 GGWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
+ Y A K G+ T ++ +Q I+ N + PGY+ TDM
Sbjct: 152 ARPTVAPYTAAKGGIKMLTC------SMAAEWAQFNIQ----TNAIGPGYILTDM 196
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 81.4 bits (202), Expect = 7e-19
Identities = 52/227 (22%), Positives = 78/227 (34%), Gaps = 60/227 (26%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL-----QKLDILDKNSIKA 54
VTG +GIG GIV+ + G + + +D S G+ ++L D+ ++ +K
Sbjct: 14 VTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKT 71
Query: 55 LHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDILFPLLR- 112
L G +D +VNNA E +Q + N + + P LR
Sbjct: 72 LVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRK 131
Query: 113 SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPN 172
S G V+N+SS G G
Sbjct: 132 SQGNVINISSLVGA----------------------------------------IGQAQA 151
Query: 173 SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
Y ATK V TK L + +R VNC+ PG + T +
Sbjct: 152 VPYVATKGAVTAMTKALALDES---PYGVR----VNCISPGNIWTPL 191
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 81.0 bits (201), Expect = 9e-19
Identities = 53/235 (22%), Positives = 77/235 (32%), Gaps = 79/235 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQK-----LDILDKNSIKA 54
VTGA KGIG VK L G + R S ++ +D+ D ++ +
Sbjct: 12 VTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEK 69
Query: 55 LHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFPL 110
G VD+LVNNAA+ +PF + N ++ V ++
Sbjct: 70 A----LGGIGPVDLLVNNAALVIM----QPFLEVTKEAFDRSFSVNLRSVFQVSQMVARD 121
Query: 111 LR---SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
+ G +VNVSS H+
Sbjct: 122 MINRGVPGSIVNVSSMVAHV---------------------------------------- 141
Query: 168 GGWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y++TK + TK A+ L IR VN V+P V TDM
Sbjct: 142 TFPNLITYSSTKGAMTMLTK------AMAMELGPHKIR----VNSVNPTVVLTDM 186
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 80.6 bits (200), Expect = 1e-18
Identities = 44/238 (18%), Positives = 77/238 (32%), Gaps = 73/238 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTG + IG V L + G + + D + +A+E L+ +D+ +
Sbjct: 18 VTGGAQNIGLACVTALAEA--GARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTE 75
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTN----YFALIDVCD 105
S++ + + G VD+LV A I +E + N + + V
Sbjct: 76 SVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGR 135
Query: 106 ILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSH 165
I+ L + G +V + S G +
Sbjct: 136 IM--LEQKQGVIVAIGSMSGLI-------------------------------------- 155
Query: 166 TKGGWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMS 217
+AY A+K GV + +L + IR N V P Y+ T ++
Sbjct: 156 VNRPQQQAAYNASKAGVHQYIR------SLAAEWAPHGIR----ANAVAPTYIETTLT 203
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 81.7 bits (202), Expect = 1e-18
Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 31/148 (20%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQ----EALEKLQK----------LDI 46
+TGA+ G G + L +Y + RD EA+ + LD+
Sbjct: 10 ITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDV 68
Query: 47 LDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGS-------QALHTMRTNYFA 99
+ S+ D + E G +DVL++NA FG Q N +
Sbjct: 69 QSQVSVDRAIDQIIGEDGRIDVLIHNAGHMV-------FGPAEAFTPEQFAELYDINVLS 121
Query: 100 LIDVCDILFPLLRS--HGRVVNVSSSCG 125
V P +R HG ++ +SSS
Sbjct: 122 TQRVNRAALPHMRRQKHGLLIWISSSSS 149
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 81.1 bits (201), Expect = 1e-18
Identities = 44/238 (18%), Positives = 76/238 (31%), Gaps = 68/238 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL------------DIL 47
VTG GIG G+ GL+ G + + R+ + A+++L+ L DI
Sbjct: 16 VTGGGSGIGKGVAAGLVAA--GASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDIT 73
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDI 106
+++ D + A HG + +V+ A + + S+A T+ N + V
Sbjct: 74 NEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKH 133
Query: 107 LFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
+ G V +SS
Sbjct: 134 AAREMVRGGGGSFVGISSIAASN------------------------------------- 156
Query: 165 HTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
AY TK V +L+ + +R VN + PG + TD+ +
Sbjct: 157 ---THRWFGAYGVTKSAVDHLMQLAADELG---ASWVR----VNSIRPGLIRTDLVAA 204
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 80.7 bits (200), Expect = 1e-18
Identities = 43/236 (18%), Positives = 71/236 (30%), Gaps = 67/236 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL---------DILDKN 50
VTGA++GIG GI L + G +Y+T R + ++ Q L D ++
Sbjct: 10 VTGASRGIGRGIALQLCKA--GATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQES 67
Query: 51 SIKALHDHLEAE-HGGVDVLVNNAAIAFKVNSSEPFG-------SQALHTMRTNYFALID 102
+++L + ++ E G +DVLVNNA + + S
Sbjct: 68 EVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYF 127
Query: 103 VCDILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELA 160
L+ G +V +SS
Sbjct: 128 CSVYGARLMVPAGQGLIVVISSPGSL---------------------------------- 153
Query: 161 QDGSHTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
N Y K KL+ L + + + PG V T++
Sbjct: 154 -------QYMFNVPYGVGKAACDKLAADCAHELRRHGVS----CVSLWPGIVQTEL 198
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 80.6 bits (200), Expect = 2e-18
Identities = 48/240 (20%), Positives = 74/240 (30%), Gaps = 79/240 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
V+G +G+G V+ ++ + G + G+ +L LD+ K
Sbjct: 12 VSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWK 69
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------C 104
A D GG+ VLVNNA I + + ++DV
Sbjct: 70 AAVDTAVTAFGGLHVLVNNAGIL---------NIGTIEDYALTEWQRILDVNLTGVFLGI 120
Query: 105 DILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
+ ++ G ++N+SS G
Sbjct: 121 RAVVKPMKEAGRGSIINISSIEGLA----------------------------------- 145
Query: 163 GSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
G Y ATK V TK + L+ IR VN +HPG V T M+
Sbjct: 146 -----GTVACHGYTATKFAVRGLTKSTALELG---PSGIR----VNSIHPGLVKTPMTDW 193
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 80.4 bits (199), Expect = 3e-18
Identities = 45/237 (18%), Positives = 81/237 (34%), Gaps = 71/237 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL------------DIL 47
+TG++ GIG ++ G + +T R+ R +E +++ K D+
Sbjct: 31 ITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT 88
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDV 103
+ + + + A+ G +D+LVNNA Q + T + N+ A+I++
Sbjct: 89 EASGQDDIINTTLAKFGKIDILVNNAGANL--ADGTANTDQPVELYQKTFKLNFQAVIEM 146
Query: 104 CDILFP-LLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
L+++ G +VNVSS
Sbjct: 147 TQKTKEHLIKTKGEIVNVSSIVAGP----------------------------------- 171
Query: 163 GSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+ YA K + T+ + + Q +R VN V PG V T
Sbjct: 172 ----QAHSGYPYYACAKAALDQYTRCTAIDLI---QHGVR----VNSVSPGAVATGF 217
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 80.4 bits (199), Expect = 3e-18
Identities = 53/243 (21%), Positives = 90/243 (37%), Gaps = 80/243 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI--IYLTARDASRGQEALEKLQK--------------- 43
+TGA+ GIG ++ +G + L AR + LE+L+K
Sbjct: 38 ITGASAGIGKATALEYLEASNGDMKLILAARRLEK----LEELKKTIDQEFPNAKVHVAQ 93
Query: 44 LDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTM-RTNYFALID 102
LDI IK ++L E +D+LVNNA A + ++ + + TN ALI+
Sbjct: 94 LDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALIN 153
Query: 103 VCDILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELA 160
+ + P+ ++ G +VN+ S G
Sbjct: 154 ITQAVLPIFQAKNSGDIVNLGSIAGR---------------------------------- 179
Query: 161 QDGSHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNT 214
+P + Y A+K V + D++R++L+ V + PG V T
Sbjct: 180 -------DAYPTGSIYCASKFAVGAFT---------DSLRKELINTKIRVILIAPGLVET 223
Query: 215 DMS 217
+ S
Sbjct: 224 EFS 226
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 79.6 bits (197), Expect = 3e-18
Identities = 43/223 (19%), Positives = 75/223 (33%), Gaps = 39/223 (17%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHLE 60
+TG+ GIG + + L + +I R + + L + A+ L+
Sbjct: 6 ITGSASGIGAALKELLARAGHTVI-GIDRGQADIEADLSTPGGRET-------AVAAVLD 57
Query: 61 AEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLR--SHGRVV 118
G +D LV A + + + NYF + + D L L V
Sbjct: 58 RCGGVLDGLVCCAGVG----VTAANSGL---VVAVNYFGVSALLDGLAEALSRGQQPAAV 110
Query: 119 NVSS-SCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNSAYAA 177
V S + ++ L + EL+ G + AYA
Sbjct: 111 IVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQ---------------QGQTHLAYAG 155
Query: 178 TKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDMSSG 219
+K VT L+ ++ + + +R +N V PG V T +
Sbjct: 156 SKYAVTCLA-RRNVVDWAGRGVR----LNVVAPGAVETPLLQA 193
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 79.5 bits (197), Expect = 4e-18
Identities = 50/238 (21%), Positives = 76/238 (31%), Gaps = 76/238 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------KLDILDK 49
+TGA KGIG I + G + L+ RD S A L +D+ +
Sbjct: 25 ITGATKGIGADIARAFAAA--GARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEP 82
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCD 105
++ L GG+DVLVNNA I + +P T+ N A +
Sbjct: 83 DAPAELARRAAEAFGGLDVLVNNAGI----SHPQPVVDTDPQLFDATIAVNLRAPALLAS 138
Query: 106 ILFPLLRSH---GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
+ + + G ++ V+S+
Sbjct: 139 AVGKAMVAAGEGGAIITVASAAALA----------------------------------- 163
Query: 163 GSHTKGGWPNSAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDM 216
+ AY +K G+ TK+ A L IR N V P V T+M
Sbjct: 164 -----PLPDHYAYCTSKAGLVMATKVL----ARELGPHGIR----ANSVCPTVVLTEM 208
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 79.9 bits (198), Expect = 4e-18
Identities = 47/243 (19%), Positives = 77/243 (31%), Gaps = 77/243 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
+TGA GIG + L + G + L + A + +D+ ++ S++
Sbjct: 16 ITGACGGIGLETSRVLARA--GARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVR 73
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------C 104
AL D G +D++ NNAA + + M + + V C
Sbjct: 74 ALIDFTIDTFGRLDIVDNNAAHS-------DPADMLVTQMTVDVWDDTFTVNARGTMLMC 126
Query: 105 DILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
P L S G +VN+SS+ H
Sbjct: 127 KYAIPRLISAGGGAIVNISSATAHA----------------------------------- 151
Query: 163 GSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
++AYA TK + T+ Q+ + +R N + PG V T
Sbjct: 152 -----AYDMSTAYACTKAAIETLTRYVATQYG---RHGVR----CNAIAPGLVRTPRLEV 199
Query: 220 KGP 222
P
Sbjct: 200 GLP 202
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 79.5 bits (197), Expect = 4e-18
Identities = 36/235 (15%), Positives = 74/235 (31%), Gaps = 63/235 (26%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL---------DILDKN 50
VTG++ GIG+ + + Q G + + ++A + +I D
Sbjct: 39 VTGSSGGIGWAVAEAYAQA--GADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPK 96
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQA--LHTMRTNYFALIDVCDILF 108
S++ E + G +DV V NA + + + + + + +
Sbjct: 97 SVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIG 156
Query: 109 PLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
+ + G ++ SS G + ++
Sbjct: 157 KIFKKNGKGSLIITSSISGKIVNI------------------------------------ 180
Query: 167 KGGWPNSAYAATKLGVTKLSFLQHALLSQ--DAIREDLVVNCVHPGYVNTDMSSG 219
+ Y K T L+ +L + R VN + PGY++TD++
Sbjct: 181 --PQLQAPYNTAKAACTHLA---KSLAIEWAPFAR----VNTISPGYIDTDITDF 226
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 80.2 bits (198), Expect = 5e-18
Identities = 45/241 (18%), Positives = 75/241 (31%), Gaps = 76/241 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL-----------QKLDILD 48
VTG G+G G+V+ L+ Q G + + +AL L +LD+
Sbjct: 13 VTGGANGVGIGLVRQLLNQ--GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS 70
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH----TMRTNYFALIDVC 104
+ K D +EA G V +L NNA + +P + + N +++
Sbjct: 71 REGFKMAADEVEARFGPVSILCNNAGVN----LFQPIEESSYDDWDWLLGVNLHGVVNGV 126
Query: 105 DILFPLLRSH--------GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEF 156
P + G VVN +S L
Sbjct: 127 TTFVPRMVERVKAGEQKGGHVVNTASMAAFL----------------------------- 157
Query: 157 VELAQDGSHTKGGWPN-SAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
+ Y TK V LS L ++ ++ V+ + PG V +
Sbjct: 158 ------------AAGSPGIYNTTKFAVRGLS----ESLHYSLLKYEIGVSVLCPGLVKSY 201
Query: 216 M 216
+
Sbjct: 202 I 202
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 79.1 bits (196), Expect = 5e-18
Identities = 51/248 (20%), Positives = 80/248 (32%), Gaps = 100/248 (40%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ------KLDILDKNSIK 53
VTG +KGIG I + L + G + + D Q + L+ ++D+ + S+
Sbjct: 17 VTGGSKGIGAAIARALDKA--GATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVD 74
Query: 54 ALHDHLEAEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQA-LHTMRT 95
A GG D+L NA ++ F VN+ F +Q
Sbjct: 75 AAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLA 134
Query: 96 NYFALIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNE 155
+ + G +VN +S +
Sbjct: 135 S---------------NTKGVIVNTASLAAKV---------------------------- 151
Query: 156 FVELAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVH 208
G P + Y+A+K V T+ AL ++ IR VNCV
Sbjct: 152 -------------GAPLLAHYSASKFAVFGWTQ------ALAREMAPKNIR----VNCVC 188
Query: 209 PGYVNTDM 216
PG+V T M
Sbjct: 189 PGFVKTAM 196
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 79.6 bits (197), Expect = 6e-18
Identities = 49/248 (19%), Positives = 87/248 (35%), Gaps = 86/248 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ-----------KLDILD 48
VTGA+ GIG + + L+QQ G + AR +E + + + D+ +
Sbjct: 37 VTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 94
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMR----TNYFALIDVC 104
+ I ++ + ++H GVD+ +NNA +A + S + + N AL
Sbjct: 95 EEDILSMFSAIRSQHSGVDICINNAGLA----RPDTLLSGSTSGWKDMFNVNVLALSICT 150
Query: 105 DILFPLLR----SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELA 160
+ ++ G ++N++S GH
Sbjct: 151 REAYQSMKERNVDDGHIININSMSGH---------------------------------- 176
Query: 161 QDGSHTKGGWPNSA---YAATKLGVTKLSFLQHALLSQDAIREDLV-------VNCVHPG 210
P S Y+ATK VT L+ + +R++L C+ PG
Sbjct: 177 -------RVLPLSVTHFYSATKYAVTALT---------EGLRQELREAQTHIRATCISPG 220
Query: 211 YVNTDMSS 218
V T +
Sbjct: 221 VVETQFAF 228
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 78.8 bits (195), Expect = 6e-18
Identities = 46/251 (18%), Positives = 79/251 (31%), Gaps = 91/251 (36%)
Query: 1 VTGANKGIGYGIVKGLIQQ------FDGIIYLTARDASRGQEALEKLQ---------KLD 45
+TGA KGIG I + F+ ++ L++R A+ ++ + + D
Sbjct: 7 ITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITAD 66
Query: 46 ILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV- 103
I D ++ L H+ +G +D LVNNA + FG AL + F ++
Sbjct: 67 ISDMADVRRLTTHIVERYGHIDCLVNNAGVG-------RFG--ALSDLTEEDFDYTMNTN 117
Query: 104 -------CDILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMN 154
LF L+ + G + ++S
Sbjct: 118 LKGTFFLTQALFALMERQHSGHIFFITSVAATK--------------------------- 150
Query: 155 EFVELAQDGSHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVH 208
+ +S+ Y +K G L + +R + V
Sbjct: 151 --------------AFRHSSIYCMSKFGQRGLV---------ETMRLYARKCNVRITDVQ 187
Query: 209 PGYVNTDMSSG 219
PG V T M
Sbjct: 188 PGAVYTPMWGK 198
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 79.1 bits (196), Expect = 7e-18
Identities = 42/234 (17%), Positives = 78/234 (33%), Gaps = 65/234 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
+TGA+ GIG + + G + + AR + Q +++ + D+ +
Sbjct: 37 ITGASTGIGKKVALAYAEA--GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPD 94
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTN----YFALIDVCDI 106
++ + D + E GG+D+ V NA I + + TN +
Sbjct: 95 QVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARA 154
Query: 107 LFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
+ G ++ +S GH+ ++
Sbjct: 155 MVDQGLG-GTIITTASMSGHIINI------------------------------------ 177
Query: 167 KGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMS 217
S Y +K V L+ A+ L+ IR VN V PGY+ T++
Sbjct: 178 --PQQVSHYCTSKAAVVHLT---KAMAVELAPHQIR----VNSVSPGYIRTELV 222
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 78.4 bits (194), Expect = 8e-18
Identities = 56/238 (23%), Positives = 86/238 (36%), Gaps = 82/238 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI-IYLTARDASRGQEALEKLQK----------LDILDK 49
VTGA G G I + IQQ G + T R R L++L+ LD+ ++
Sbjct: 5 VTGATAGFGECITRRFIQQ--GHKVIATGRRQER----LQELKDELGDNLYIAQLDVRNR 58
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL---HTM-RTNYFALIDVCD 105
+I+ + L AE +D+LVNNA +A + EP ++ TM TN L+ +
Sbjct: 59 AAIEEMLASLPAEWCNIDILVNNAGLALGM---EPAHKASVEDWETMIDTNNKGLVYMTR 115
Query: 106 ILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
+ P + R+HG ++N+ S+ G
Sbjct: 116 AVLPGMVERNHGHIINIGSTAGS------------------------------------- 138
Query: 164 SHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNTD 215
+ Y ATK V + S +R DL V + PG V
Sbjct: 139 ----WPYAGGNVYGATKAFVRQFS---------LNLRTDLHGTAVRVTDIEPGLVGGT 183
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 78.8 bits (195), Expect = 9e-18
Identities = 48/235 (20%), Positives = 72/235 (30%), Gaps = 66/235 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
VTGA G+G + L G + L R QE ++ D+ D +S++
Sbjct: 33 VTGAGSGVGRAVAVALAGA--GYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVR 90
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFP 109
AL + G VDVL NNA + P + TN F
Sbjct: 91 ALFTATVEKFGRVDVLFNNAGTGAP---AIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFR 147
Query: 110 LLRSH----GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSH 165
++++ GR++N S
Sbjct: 148 VMKAQEPRGGRIINNGSISATS-------------------------------------- 169
Query: 166 TKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
P SA Y ATK +T L+ S D D+ + G +T M+
Sbjct: 170 ---PRPYSAPYTATKHAITGLT----KSTSLDGRVHDIACGQIDIGNADTPMAQK 217
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 78.8 bits (195), Expect = 1e-17
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 60/229 (26%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKL------QKLDILDKNSIKA 54
+TGAN G+G + L ++ + + RD +G+ A + ++LD+ D +S++
Sbjct: 21 ITGANSGLGAVTARELARR-GATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRR 79
Query: 55 LHDHLEAEHGGVDVLVNNAAIAF--KVNSSEPFGSQALHTMRTNY---FALIDVCDILFP 109
D + DVL+NNA I + + F SQ + TN+ FAL ++L P
Sbjct: 80 FADGVSG----ADVLINNAGIMAVPYALTVDGFESQ----IGTNHLGHFALT---NLLLP 128
Query: 110 LLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGG 169
L RVV VSS + H + +L S
Sbjct: 129 RLTD--RVVTVSS----------------MAHWPGRI--------NLEDL-NWRSRRYSP 161
Query: 170 WPNSAYAATKLGVTKLSF---LQHALLSQDAIREDLVVNCVHPGYVNTD 215
W AY+ +KL L F LQ L A L HPGY +T+
Sbjct: 162 W--LAYSQSKLAN--LLFTSELQRRL---TAAGSPLRALAAHPGYSHTN 203
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 78.4 bits (194), Expect = 1e-17
Identities = 54/240 (22%), Positives = 81/240 (33%), Gaps = 70/240 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKL---------DIL 47
VTG ++GIG I K L +G + Y A R Q + ++++ D
Sbjct: 36 VTGGSRGIGAAIAKRLAL--EGAAVALTY--VNAAERAQAVVSEIEQAGGRAVAIRADNR 91
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDI 106
D +I+ GG+D+LVN+A I + E M N+ A
Sbjct: 92 DAEAIEQAIRETVEALGGLDILVNSAGI-WHSAPLEETTVADFDEVMAVNFRAPFVAIRS 150
Query: 107 LFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
L GR++ + S+ EL
Sbjct: 151 ASRHLGDGGRIITIGSN--------------------------------LAELV------ 172
Query: 167 KGGWPNSA-YAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
WP + Y+A+K + L+ L L I VN VHPG +TDM+ G
Sbjct: 173 --PWPGISLYSASKAALAGLT---KGLARDLGPRGIT----VNIVHPGSTDTDMNPADGD 223
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 78.4 bits (194), Expect = 1e-17
Identities = 47/239 (19%), Positives = 74/239 (30%), Gaps = 70/239 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------KLDILDK 49
VTG G+G GI + L + G + +T R A ++ D+ D
Sbjct: 38 VTGGGTGVGRGIAQALSAE--GYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDP 95
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCD 105
+ + AL + AE +D+LVNNA P + N
Sbjct: 96 DQVAALFAAVRAEFARLDLLVNNAGSNVP---PVPLEEVTFEQWNGIVAANLTGAFLCTQ 152
Query: 106 ILFPLLRSH----GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQ 161
F ++++ GR++N S
Sbjct: 153 HAFRMMKAQTPRGGRIINNGSISAQT---------------------------------- 178
Query: 162 DGSHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
PNSA Y ATK +T L+ + D D+ + G TDM++
Sbjct: 179 -------PRPNSAPYTATKHAITGLT----KSTALDGRMHDIACGQIDIGNAATDMTAR 226
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 78.4 bits (194), Expect = 1e-17
Identities = 50/237 (21%), Positives = 82/237 (34%), Gaps = 69/237 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL------------DIL 47
+TG++ GIG Q+ G + +T R + R +E + + K D+
Sbjct: 11 ITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT 68
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDV 103
++ + + + G +DVLVNNA A Q + T++ N A+I++
Sbjct: 69 TEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEM 128
Query: 104 CDILFP-LLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
+ P L+ S G +VNVSS
Sbjct: 129 TKKVKPHLVASKGEIVNVSSIVAGP----------------------------------- 153
Query: 163 GSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+ YA K + T+ + + A + IR VN V PG V T
Sbjct: 154 ----QAQPDFLYYAIAKAALDQYTRSTAIDLA---KFGIR----VNSVSPGMVETGF 199
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 77.9 bits (193), Expect = 1e-17
Identities = 45/236 (19%), Positives = 79/236 (33%), Gaps = 76/236 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
VTG G+G +VK L+ + G + + + + GQ+ +L + D+ +
Sbjct: 11 VTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWT 68
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------C 104
+ ++ G ++VLVNNA I + T R F L+ + C
Sbjct: 69 LVMAAVQRRLGTLNVLVNNAGIL---------LPGDMETGRLEDFSRLLKINTESVFIGC 119
Query: 105 DILFPLLRSH-GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
++ G ++N++S L
Sbjct: 120 QQGIAAMKETGGSIINMASVSSWL------------------------------------ 143
Query: 164 SHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+ Y+A+K V T+ + L AIR VN +HP + T M
Sbjct: 144 ----PIEQYAGYSASKAAVSALTRAAALSCR-KQGYAIR----VNSIHPDGIYTPM 190
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 78.0 bits (193), Expect = 2e-17
Identities = 60/240 (25%), Positives = 83/240 (34%), Gaps = 71/240 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQ---------KLDIL 47
VTGA++GIG I L DG I Y A A+ +E K++ + D+
Sbjct: 32 VTGASRGIGAAIAARLAS--DGFTVVINY--AGKAAAAEEVAGKIEAAGGKALTAQADVS 87
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDI 106
D +++ L E GGVDVLVNNA I + + G + N +
Sbjct: 88 DPAAVRRLFATAEEAFGGVDVLVNNAGIM-PLTTIAETGDAVFDRVIAVNLKGTFNTLRE 146
Query: 107 LFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
LR GR++N+S+S L
Sbjct: 147 AAQRLRVGGRIINMSTSQVGL--------------------------------------- 167
Query: 167 KGGWPNSA-YAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
P+ YAA K GV ++ H L L I VN V PG TD+
Sbjct: 168 --LHPSYGIYAAAKAGVEAMT---HVLSKELRGRDIT----VNAVAPGPTATDLFLEGKS 218
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 78.6 bits (194), Expect = 2e-17
Identities = 39/234 (16%), Positives = 66/234 (28%), Gaps = 69/234 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTG GIG ++ G + L+ D ++A+ L+ D+ +
Sbjct: 36 VTGGASGIGLATATEFARR--GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLD 93
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH----TMRTNYFALIDVCDI 106
+ L D GGVDV+ +NA I + P + + + I +
Sbjct: 94 EMVRLADEAFRLLGGVDVVFSNAGIV----VAGPLAQMNHDDWRWVIDIDLWGSIHAVEA 149
Query: 107 LFPLLRSHGR---VVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
P L G + +S G +
Sbjct: 150 FLPRLLEQGTGGHIAFTASFAGLV------------------------------------ 173
Query: 164 SHTKGGWPN-SAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
Y K GV L+ + + I V+ + P V T +
Sbjct: 174 -----PNAGLGTYGVAKYGVVGLAETLAREVKPNGIG----VSVLCPMVVETKL 218
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 77.6 bits (192), Expect = 2e-17
Identities = 45/241 (18%), Positives = 74/241 (30%), Gaps = 81/241 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQK------------LDIL 47
VTGA+ GIG + G + L R+ + ++ + + L
Sbjct: 17 VTGASDGIGREAAMTYARY--GATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTC 74
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTN---YFAL 100
+ + L + + +D +++NA + V P Q M+ N F L
Sbjct: 75 TSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVC---PMSEQNPQVWQDVMQVNVNATFML 131
Query: 101 IDVCDILFPLLR--SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVE 158
PLL G +V SSS G
Sbjct: 132 TQAL---LPLLLKSDAGSLVFTSSSVGRQG------------------------------ 158
Query: 159 LAQDGSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
+ W AYAA+K ++ ++ +R VNC++PG T
Sbjct: 159 --------RANW--GAYAASKFATEGMMQVLADEYQ----QRLR----VNCINPGGTRTA 200
Query: 216 M 216
M
Sbjct: 201 M 201
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 77.5 bits (192), Expect = 2e-17
Identities = 51/230 (22%), Positives = 80/230 (34%), Gaps = 63/230 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ-------KLDILDKNSI 52
VTGA GIG I + G + L R+A+ A ++L D+ D ++
Sbjct: 16 VTGAGSGIGLEICRAFAAS--GARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAM 73
Query: 53 KALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT-MRTNYFALIDVCDILFP-- 109
A EA V +LVN+A IA +++ + M N +
Sbjct: 74 TAAAAEAEA-VAPVSILVNSAGIA-RLHDALETDDATWRQVMAVNVDGMFWASRAFGRAM 131
Query: 110 LLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGG 169
+ R G +VN+ S G + +
Sbjct: 132 VARGAGAIVNLGSMSGTIVNR--------------------------------------P 153
Query: 170 WPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
S+Y A+K V +L+ AL + +R VN + PGYV T+M
Sbjct: 154 QFASSYMASKGAVHQLT---RALAAEWAGRGVR----VNALAPGYVATEM 196
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 77.5 bits (192), Expect = 2e-17
Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 67/235 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL---------DILDKN 50
VT + GIG I + L Q G + +++R + LQ +
Sbjct: 19 VTASTDGIGLAIARRLAQD--GAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAE 76
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDILFP 109
+ L HGGVD+LV+NAA+ + + + N A + + + P
Sbjct: 77 DRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVP 136
Query: 110 LL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
+ R G V+ VSS +
Sbjct: 137 EMEKRGGGSVLIVSSVGAY----------------------------------------H 156
Query: 168 GGWPNSAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDMSS 218
Y +K + TK A+ L+ IR VNC+ PG + T+ S
Sbjct: 157 PFPNLGPYNVSKTALLGLTK----NLAVELAPRNIR----VNCLAPGLIKTNFSQ 203
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 76.2 bits (188), Expect = 2e-17
Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 71/224 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHLE 60
+ GA+ +G + + L ++ + I A R + +DI + +SIK +++
Sbjct: 8 LIGASGTLGSAVKERLEKKAEVIT------AGRHSGDV----TVDITNIDSIKKMYE--- 54
Query: 61 AEHGGVDVLVNNAAIAFKVNSSEPFGS----QALHTMRTNYFALIDVCDILFPLLRSHGR 116
+ G VD +V+ A + P + T+ + I++ + L G
Sbjct: 55 -QVGKVDAIVSATGSA----TFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGS 109
Query: 117 VVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPN-SAY 175
+ ++
Sbjct: 110 FTLTTGIMMED-----------------------------------------PIVQGASA 128
Query: 176 AATKLGVTKLSFLQH-ALLSQDAIREDLVVNCVHPGYVNTDMSS 218
A VT +F + A+ IR +N V P +
Sbjct: 129 AMANGAVT--AFAKSAAIEMPRGIR----INTVSPNVLEESWDK 166
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 77.2 bits (191), Expect = 3e-17
Identities = 47/231 (20%), Positives = 72/231 (31%), Gaps = 75/231 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHL 59
VTGA GIG +V L G + + R + L D+ + L +
Sbjct: 33 VTGAAGGIGGAVVTALRAA--GARVAVADRAVAGIAADLH--LPGDLREAAYADGLPGAV 88
Query: 60 EAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------CDILFPL 110
A G +D++VNNA + + + + V C PL
Sbjct: 89 AAGLGRLDIVVNNAGVI---------SRGRITETTDADWSLSLGVNVEAPFRICRAAIPL 139
Query: 111 LRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
+ + G +VNV+S G +
Sbjct: 140 MAAAGGGAIVNVASCWG----------------------------------------LRP 159
Query: 169 GWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
G ++ Y TK + T+ + HA IR +N V P VNT M
Sbjct: 160 GPGHALYCLTKAALASLTQCMGMDHA---PQGIR----INAVCPNEVNTPM 203
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 77.2 bits (191), Expect = 3e-17
Identities = 36/237 (15%), Positives = 65/237 (27%), Gaps = 75/237 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKL---------DIL 47
+ G K +G K + + Y A+D+ + ++L+ D+
Sbjct: 16 IAGGIKNLGALTAKTFAL--ESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLS 73
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVN----SSEPFGSQALHTMRTNYFALIDV 103
++ + L D E E G VD+ +N K S F + N
Sbjct: 74 NEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAM----DTINNKVAYFF 129
Query: 104 CDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
+ +G ++ +++S
Sbjct: 130 IKQAAKHMNPNGHIITIATSLLAA------------------------------------ 153
Query: 164 SHTKGGWPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
S YA K V + A L + I VN + PG ++T
Sbjct: 154 -----YTGFYSTYAGNKAPVEHYT---RAASKELMKQQIS----VNAIAPGPMDTSF 198
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 77.2 bits (191), Expect = 3e-17
Identities = 45/235 (19%), Positives = 70/235 (29%), Gaps = 72/235 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKL---------DIL 47
VTG+ +GIG + L + G + Y A ++ + +++ L DI
Sbjct: 23 VTGSGRGIGAAVAVHLGR--LGAKVVVNY--ANSTKDAEKVVSEIKALGSDAIAIKADIR 78
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDI 106
I L D A G +D+ V+N+ + + + N V
Sbjct: 79 QVPEIVKLFDQAVAHFGHLDIAVSNSGV-VSFGHLKDVTEEEFDRVFSLNTRGQFFVARE 137
Query: 107 LFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
+ L GR+V SS+
Sbjct: 138 AYRHLTEGGRIVLTSSNTSKD--------------------------------------- 158
Query: 167 KGGWPN-SAYAATKLGVTKLSFLQHALLSQD----AIREDLVVNCVHPGYVNTDM 216
P S Y+ +K V + S+D I VN V PG TDM
Sbjct: 159 -FSVPKHSLYSGSKGAVDSFV----RIFSKDCGDKKIT----VNAVAPGGTVTDM 204
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 77.3 bits (191), Expect = 3e-17
Identities = 38/247 (15%), Positives = 70/247 (28%), Gaps = 70/247 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKL---------DIL 47
VTGA +GIG + L + G + Y A +E + ++K ++
Sbjct: 34 VTGAGRGIGREMAMELGR--RGCKVIVNY--ANSTESAEEVVAAIKKNGSDAACVKANVG 89
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDI 106
I + + G +D++ +N+ + + + N V
Sbjct: 90 VVEDIVRMFEEAVKIFGKLDIVCSNSGV-VSFGHVKDVTPEEFDRVFTINTRGQFFVARE 148
Query: 107 LFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
+ L GR++ + S G
Sbjct: 149 AYKHLEIGGRLILMGSITGQA--------------------------------------- 169
Query: 167 KGGWPNSA-YAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
P A Y+ +K + + + ++ I VN V PG + TDM
Sbjct: 170 -KAVPKHAVYSGSKGAIETFA---RCMAIDMADKKIT----VNVVAPGGIKTDMYHAVCR 221
Query: 223 LTIDQDN 229
I
Sbjct: 222 EYIPNGE 228
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 77.2 bits (191), Expect = 3e-17
Identities = 44/231 (19%), Positives = 78/231 (33%), Gaps = 75/231 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHL 59
VTG + GIG +V L++ G + + D + K+D+ ++ +K +
Sbjct: 19 VTGGSSGIGLAVVDALVRY--GAKVVSVSLDEKSDVNVSDHF-KIDVTNEEEVKEAVEKT 75
Query: 60 EAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------CDILFPL 110
++G +D+LVNNA I LH T + +IDV P+
Sbjct: 76 TKKYGRIDILVNNAGIE---------QYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPV 126
Query: 111 LRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
+ + G ++N++S +
Sbjct: 127 MLAIGHGSIINIASVQSY----------------------------------------AA 146
Query: 169 GWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+AY +K + T+ + +A IR N V PG + T M
Sbjct: 147 TKNAAAYVTSKHALLGLTRSVAIDYA----PKIR----CNAVCPGTIMTPM 189
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 76.4 bits (189), Expect = 5e-17
Identities = 55/237 (23%), Positives = 89/237 (37%), Gaps = 74/237 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQK----------LDILDK 49
VTG ++G+G+GI +GL + G + + +R+ EA +KL + D+ +
Sbjct: 26 VTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNY 83
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT-MRTNYFALIDVCDILF 108
+K L + ++ + G +D +VN A I + + +E F + N F VC F
Sbjct: 84 EEVKKLLEAVKEKFGKLDTVVNAAGIN-RRHPAEEFPLDEFRQVIEVNLFGTYYVCREAF 142
Query: 109 P--LLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
+ ++N+ S +
Sbjct: 143 SLLRESDNPSIINIGS------------------------------LTVEE--------- 163
Query: 167 KGGWPN-SAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
PN SAYAA+K GV TK AL + IR VN + PG+ T M
Sbjct: 164 -VTMPNISAYAASKGGVASLTK------ALAKEWGRYGIR----VNVIAPGWYRTKM 209
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 77.4 bits (191), Expect = 6e-17
Identities = 45/249 (18%), Positives = 70/249 (28%), Gaps = 92/249 (36%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG--IIYLTARDASRGQEALEKLQK------------LDI 46
+TG + GIG + L +Y T RD E + LD+
Sbjct: 7 ITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDV 66
Query: 47 LDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFG-------SQALHTMRTNYFA 99
D S+ A + G VDVLV NA + G + N
Sbjct: 67 RDSKSVAAARE--RVTEGRVDVLVCNAGLGL-------LGPLEALGEDAVASVLDVNVVG 117
Query: 100 LIDVCDILFPLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFV 157
+ + P ++ GRV+ S G +
Sbjct: 118 TVRMLQAFLPDMKRRGSGRVLVTGSVGGLM------------------------------ 147
Query: 158 ELAQDGSHTKGGWP-NSAYAATKLGVTKLSFLQHAL--LSQDAIREDLV-----VNCVHP 209
G P N Y A+K AL L +++ L+ ++ +
Sbjct: 148 -----------GLPFNDVYCASK----------FALEGLC-ESLAVLLLPFGVHLSLIEC 185
Query: 210 GYVNTDMSS 218
G V+T
Sbjct: 186 GPVHTAFME 194
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 76.5 bits (189), Expect = 6e-17
Identities = 55/243 (22%), Positives = 80/243 (32%), Gaps = 85/243 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI-IYLTARDASRGQEALEKLQK------------LDIL 47
+TGA G G + + G + LT R R L+ L LD+
Sbjct: 26 ITGATSGFGEACARRFAEA--GWSLVLTGRREER----LQALAGELSAKTRVLPLTLDVR 79
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL---HTM-RTNYFALIDV 103
D+ ++ A D+L E + L+NNA +A +P S L TM TN L+
Sbjct: 80 DRAAMSAAVDNLPEEFATLRGLINNAGLALGT---DPAQSCDLDDWDTMVDTNIKGLLYS 136
Query: 104 CDILFPLLRSHGR---VVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELA 160
+L P L +HG +VN+ S G
Sbjct: 137 TRLLLPRLIAHGAGASIVNLGSVAGKWP-------------------------------- 164
Query: 161 QDGSHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNT 214
+P S Y TK V + S +R DL V + PG +
Sbjct: 165 ---------YPGSHVYGGTKAFVEQFS---------LNLRCDLQGTGVRVTNLEPGLCES 206
Query: 215 DMS 217
+ S
Sbjct: 207 EFS 209
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 76.4 bits (189), Expect = 6e-17
Identities = 44/238 (18%), Positives = 76/238 (31%), Gaps = 65/238 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------KLDILDK 49
VTG N+GIG + + G + + R A+ E EK+ + D+ +
Sbjct: 19 VTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNT 76
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNY---FALIDVCDI 106
+ + ++A+ G + L+ NA ++ ++E N F
Sbjct: 77 DIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAK 136
Query: 107 LFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
L+ + G +V SS + + S
Sbjct: 137 LWLQKQQKGSIVVTSSMSSQIINQ---------------------------------SSL 163
Query: 167 KGGWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSS 218
G Y ++K K L + IR VN + PGYVNTD ++
Sbjct: 164 NGSLTQVFYNSSKAACSNLVK------GLAAEWASAGIR----VNALSPGYVNTDQTA 211
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 76.4 bits (189), Expect = 6e-17
Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 78/232 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHL 59
VTGA+ GIG I + + + G + + + + D+ + + +KA DH+
Sbjct: 13 VTGASMGIGRAIAERFVDE--GSKVIDLSIHDPGEAKYDH--IECDVTNPDQVKASIDHI 68
Query: 60 EAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------CDILFPL 110
E+G + VLVNNA I + +M + +IDV P
Sbjct: 69 FKEYGSISVLVNNAGIE---------SYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPY 119
Query: 111 LRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
+ +VN+SS +
Sbjct: 120 MIRSRDPSIVNISSVQASI----------------------------------------- 138
Query: 169 GWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
N SAY +K V TK L +A +R N V P ++T +
Sbjct: 139 ITKNASAYVTSKHAVIGLTKSIALDYA----PLLR----CNAVCPATIDTPL 182
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 76.1 bits (188), Expect = 7e-17
Identities = 58/244 (23%), Positives = 85/244 (34%), Gaps = 83/244 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTGA++GIG I + L G + LTARD + + ++ D+ +
Sbjct: 34 VTGASRGIGAAIARKLGSL--GARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSD 91
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------ 103
+I A + A HG DVLVNNA + + LHTM+ + ALI V
Sbjct: 92 AIAAFATGVLAAHGRCDVLVNNAGVGWFGG--------PLHTMKPAEWDALIAVNLKAPY 143
Query: 104 --CDILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVEL 159
P + G ++N+SS G
Sbjct: 144 LLLRAFAPAMIAAKRGHIINISSLAGKN-------------------------------- 171
Query: 160 AQDGSHTKGGWPNSA-YAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTD 215
+ A Y A+K G+ L + L Q +R V+ V PG V T+
Sbjct: 172 ---------PVADGAAYTASKWGLNGLM---TSAAEELRQHQVR----VSLVAPGSVRTE 215
Query: 216 MSSG 219
G
Sbjct: 216 FGVG 219
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 75.3 bits (186), Expect = 1e-16
Identities = 55/243 (22%), Positives = 81/243 (33%), Gaps = 85/243 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI-IYLTARDASRGQEALEKLQK-------------LDI 46
+TGA+ GIG + L + G + + AR + L L LD+
Sbjct: 12 ITGASSGIGEATARALAAE--GAAVAIAARRVEK----LRALGDELTAAGAKVHVLELDV 65
Query: 47 LDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL---HTM-RTNYFALID 102
D+ + A GG+D+LVNNA I P M TN L+
Sbjct: 66 ADRQGVDAAVASTVEALGGLDILVNNAGIML----LGPVEDADTTDWTRMIDTNLLGLMY 121
Query: 103 VCDILFP-LLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQ 161
+ P LLRS G VV +SS G +
Sbjct: 122 MTRAALPHLLRSKGTVVQMSSIAGRVNV-------------------------------- 149
Query: 162 DGSHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNTD 215
N+A Y ATK GV S + +R+++ V + PG +T+
Sbjct: 150 ---------RNAAVYQATKFGVNAFS---------ETLRQEVTERGVRVVVIEPGTTDTE 191
Query: 216 MSS 218
+
Sbjct: 192 LRG 194
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 75.2 bits (186), Expect = 1e-16
Identities = 45/235 (19%), Positives = 78/235 (33%), Gaps = 78/235 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ-----KLDILDKNSIKAL 55
VTG GIG I ++ + D R + ++ D+ D ++K
Sbjct: 7 VTGGGHGIGKQICLDFLEA-GDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKF 65
Query: 56 HDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV-------C--D 105
++ + +DVLVNNA L ++ F ++ V
Sbjct: 66 VEYAMEKLQRIDVLVNNACRG-SKGI--------LSSLLYEEFDYILSVGLKAPYELSRL 116
Query: 106 ILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSH 165
L+++ GR++N++S+
Sbjct: 117 CRDELIKNKGRIINIASTRAFQ-------------------------------------- 138
Query: 166 TKGGWPNSA-YAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
P+S YA+ K G+ L+ HAL L D + VNC+ PG++N
Sbjct: 139 ---SEPDSEAYASAKGGIVALT---HALAMSLGPD-VL----VNCIAPGWINVTE 182
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 75.3 bits (186), Expect = 1e-16
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 78/237 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ-------KLDILDKNSIK 53
+TGA+ GIG I + ++ ++ L AR R L+ L ++D+ DK +
Sbjct: 21 ITGASSGIGEAIARRFSEEGHPLL-LLARRVER----LKALNLPNTLCAQVDVTDKYTFD 75
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL---HTM-RTNYFALIDVCDILFP 109
E +G D +VNNA + +Q M N L++ +
Sbjct: 76 TAITRAEKIYGPADAIVNNAGMML----LGQIDTQEANEWQRMFDVNVLGLLNGMQAVLA 131
Query: 110 LL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
+ R+ G ++N+SS G
Sbjct: 132 PMKARNCGTIINISSIAGKKTF-------------------------------------- 153
Query: 168 GGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNTDMSS 218
P+ A Y TK V +S + +RE++ V + P V T++ S
Sbjct: 154 ---PDHAAYCGTKFAVHAIS---------ENVREEVAASNVRVMTIAPSAVKTELLS 198
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 75.2 bits (186), Expect = 1e-16
Identities = 55/235 (23%), Positives = 84/235 (35%), Gaps = 78/235 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----KLDILDKNSIKAL 55
VTG +GIG I + ++ G ++ L G+E E + ++D+ D+
Sbjct: 11 VTGGARGIGRAIAQAFARE--GALVALCDLRP-EGKEVAEAIGGAFFQVDLEDERERVRF 67
Query: 56 HDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------CDI 106
+ G VDVLVNNAAIA GS T+R + +++V +
Sbjct: 68 VEEAAYALGRVDVLVNNAAIA-------APGS--ALTVRLPEWRRVLEVNLTAPMHLSAL 118
Query: 107 LFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
+R G +VNV+S + L
Sbjct: 119 AAREMRKVGGGAIVNVAS--------------------------VQGLF----------- 141
Query: 165 HTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
N+AY A+K G+ T+ L A IR VN V PG + T+
Sbjct: 142 ---AEQENAAYNASKGGLVNLTRSLALDLA---PLRIR----VNAVAPGAIATEA 186
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 74.9 bits (185), Expect = 1e-16
Identities = 40/238 (16%), Positives = 67/238 (28%), Gaps = 76/238 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL----------QKLDILDK 49
+TGA++GIG I + L + G + L AR R ++ +L LD+
Sbjct: 7 ITGASRGIGEAIARALARD--GYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKA 64
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL---HTM-RTNYFALIDVCD 105
S++ + G VDV+V NA + + + + H M N +
Sbjct: 65 ESVEEFSKKVLERFGDVDVVVANAGLGY----FKRLEELSEEEFHEMIEVNLLGVWRTLK 120
Query: 106 ILFPLLRSHGR--VVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
L+ G +V S
Sbjct: 121 AFLDSLKRTGGLALVTTSDVSAR------------------------------------- 143
Query: 164 SHTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIRED---LVVNCVHPGYVNTDMSS 218
G Y +TK L + + + + PG V+T
Sbjct: 144 -LIPYG---GGYVSTKWAARALV---------RTFQIENPDVRFFELRPGAVDTYFGG 188
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 75.3 bits (186), Expect = 1e-16
Identities = 47/238 (19%), Positives = 75/238 (31%), Gaps = 81/238 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
VTGA GIG + + L + G + D A K+ ++D+ D+ I
Sbjct: 34 VTGAGAGIGLAVARRLADE--GCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQII 91
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------C 104
A+ D A GGVD LV NA + +L F +I +
Sbjct: 92 AMVDACVAAFGGVDKLVANAGVV---------HLASLIDTTVEDFDRVIAINLRGAWLCT 142
Query: 105 DILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
P + G +VN+SS G +
Sbjct: 143 KHAAPRMIERGGGAIVNLSSLAGQV----------------------------------- 167
Query: 163 GSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
AY +K G+ ++++ + IR N + P +V+T M
Sbjct: 168 ------AVGGTGAYGMSKAGIIQLSRITAAELR---SSGIR----SNTLLPAFVDTPM 212
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 75.7 bits (187), Expect = 2e-16
Identities = 47/228 (20%), Positives = 82/228 (35%), Gaps = 58/228 (25%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKL---------DILDKNS 51
VTGA+ GIG+ I + I+ + + + D+ D++
Sbjct: 39 VTGASYGIGFAIASAYAKAGATIV-FNDINQELVDRGMAAYKAAGINAHGYVCDVTDEDG 97
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT-MRTNYFALIDVCDILFPL 110
I+A+ +E+E G +D+LVNNA I + + + + A V + P
Sbjct: 98 IQAMVAQIESEVGIIDILVNNAGII-RRVPMIEMTAAQFRQVIDIDLNAPFIVSKAVIPS 156
Query: 111 L--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
+ + HG+++N+ S + SE G
Sbjct: 157 MIKKGHGKIINICS-------MMSEL---------------------------------G 176
Query: 169 GWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
SAYAA K G+ L+ + + I+ N + PGY+ T
Sbjct: 177 RETVSAYAAAKGGLKMLTKNIASEYGEANIQ----CNGIGPGYIATPQ 220
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 74.9 bits (185), Expect = 2e-16
Identities = 41/237 (17%), Positives = 80/237 (33%), Gaps = 79/237 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
VTG GIG + + G + + + ++ ++D+ +
Sbjct: 32 VTGGGSGIGRATAELFAKN--GAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAE 89
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------C 104
++ + A+ G VDVLVNNA G+ + T+ + ++ V
Sbjct: 90 SMVEKTTAKWGRVDVLVNNAGFG-------TTGN--VVTIPEETWDRIMSVNVKGIFLCS 140
Query: 105 DILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
+ P++R + G ++N +S +A
Sbjct: 141 KYVIPVMRRNGGGSIINTTS--------------------------YTATS--------- 165
Query: 163 GSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+AY A+K + T+ + HA ++ IR VN V PG +++
Sbjct: 166 -----AIADRTAYVASKGAISSLTRAMAMDHA---KEGIR----VNAVAPGTIDSPY 210
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 74.5 bits (184), Expect = 2e-16
Identities = 34/230 (14%), Positives = 58/230 (25%), Gaps = 65/230 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKLDILDKNSIKALH 56
VT A G V+ L Q G + DA+ Q + L + + L
Sbjct: 6 VTHARHFAGPAAVEALTQD--GYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLV 63
Query: 57 DHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDILFPLLR 112
D +D +V+N I + + P + I + LR
Sbjct: 64 DATLQHGEAIDTIVSNDYIP-RPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLR 122
Query: 113 S--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGW 170
+ V+ ++SS G
Sbjct: 123 AAGGASVIFITSSVGKK-----------------------------------------PL 141
Query: 171 PNSA-YAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
+ Y + L + LS+D I + + P + N
Sbjct: 142 AYNPLYGPARAATVALV---ESAAKTLSRDGIL----LYAIGPNFFNNPT 184
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 74.4 bits (184), Expect = 2e-16
Identities = 50/241 (20%), Positives = 78/241 (32%), Gaps = 80/241 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL----------QKLDILDK 49
VTGA+ G G I + + G + A +E + D+ D+
Sbjct: 7 VTGASSGNGLAIATRFLAR--GDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADE 64
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV----- 103
+ A + G +DVLVNNA I + + LHT F ++ V
Sbjct: 65 GDVNAAIAATMEQFGAIDVLVNNAGI------TGNSEAGVLHTTPVEQFDKVMAVNVRGI 118
Query: 104 ---CDILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVE 158
C + P + G +VN++S +++L+
Sbjct: 119 FLGCRAVLPHMLLQGAGVIVNIAS--------------------------VASLV----- 147
Query: 159 LAQDGSHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
SAY +K V TK + +A IR N V PG + T
Sbjct: 148 ---------AFPGRSAYTTSKGAVLQLTKSVAVDYA---GSGIR----CNAVCPGMIETP 191
Query: 216 M 216
M
Sbjct: 192 M 192
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 74.5 bits (184), Expect = 3e-16
Identities = 46/246 (18%), Positives = 81/246 (32%), Gaps = 96/246 (39%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
+TG+ +GIG + ++ +G + + D R ++A ++ ++D+ ++SI
Sbjct: 13 ITGSARGIGRAFAEAYVR--EGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSID 70
Query: 54 ALHDHLEAEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQA-LHTMRT 95
A GG+D+LVNNAA+ F +N + QA M
Sbjct: 71 AAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIA 130
Query: 96 NYFALIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNE 155
G+++N++S G
Sbjct: 131 Q---------------GRGGKIINMASQAGRR---------------------------- 147
Query: 156 FVELAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVHPG 210
G + Y ATK V T+ + L L + I VN + PG
Sbjct: 148 -------------GEALVAIYCATKAAVISLTQSA----GLDLIKHRIN----VNAIAPG 186
Query: 211 YVNTDM 216
V+ +
Sbjct: 187 VVDGEH 192
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 74.1 bits (183), Expect = 3e-16
Identities = 42/241 (17%), Positives = 75/241 (31%), Gaps = 83/241 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTGA IG L ++ G I L + ++A ++ D+ +
Sbjct: 12 VTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEE 69
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------ 103
++ D + + G +D L NNA + ++ F ++ +
Sbjct: 70 AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAP--------VQDYPSDDFARVLTINVTGAF 121
Query: 104 --CDILFPLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVEL 159
+ + + +GR+VN +S G
Sbjct: 122 HVLKAVSRQMITQNYGRIVNTASMAGVK-------------------------------- 149
Query: 160 AQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
G PN +AY +K + T+ + L A IR VN + PGY+
Sbjct: 150 ---------GPPNMAAYGTSKGAIIALTETAALDLA---PYNIR----VNAISPGYMGPG 193
Query: 216 M 216
Sbjct: 194 F 194
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 74.1 bits (183), Expect = 3e-16
Identities = 46/237 (19%), Positives = 68/237 (28%), Gaps = 86/237 (36%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHLE 60
VTGA KGIGY ++ + + +D+ D + + L
Sbjct: 12 VTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFAT--EVMDVADAAQVAQVCQRLL 69
Query: 61 AEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQA-LHTMRTNYFALID 102
AE +D LVN A I F VN F Q ++ R
Sbjct: 70 AETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRR------- 122
Query: 103 VCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
+ G +V V+S H
Sbjct: 123 ---------QRGGAIVTVASDAAH------------------------------------ 137
Query: 163 GSHTKGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
SAY A+K + L+ ++ L+ +R N V PG +TDM
Sbjct: 138 ----TPRIGMSAYGASKAALKSLA---LSVGLELAGSGVR----CNVVSPGSTDTDM 183
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 74.1 bits (183), Expect = 4e-16
Identities = 50/247 (20%), Positives = 84/247 (34%), Gaps = 84/247 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTG+ GIG + L ++ G + + +A + +++ +D+ D
Sbjct: 14 VTGSGGGIGQAYAEALARE--GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPE 71
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------ 103
S KA+ D AE GG+D LVNNAAI + L T+ Y+ + V
Sbjct: 72 SAKAMADRTLAEFGGIDYLVNNAAIFGGMKLD------FLLTIDPEYYKKFMSVNLDGAL 125
Query: 104 --CDILFPLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVEL 159
++ + G +VN SS+ L
Sbjct: 126 WCTRAVYKKMTKRGGGAIVNQSSTAAWL-------------------------------- 153
Query: 160 AQDGSHTKGGWPNSAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTD 215
Y K+G+ T+ Q + L IR +N + PG ++T+
Sbjct: 154 ---------YSNY--YGLAKVGINGLTQ----QLSRELGGRNIR----INAIAPGPIDTE 194
Query: 216 MSSGKGP 222
+ P
Sbjct: 195 ANRTTTP 201
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 74.2 bits (183), Expect = 4e-16
Identities = 48/249 (19%), Positives = 74/249 (29%), Gaps = 76/249 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQ---------KLDIL 47
TGA +GIG GI L + G + Y + +E + +L+ + DI
Sbjct: 26 TTGAGRGIGRGIAIELGR--RGASVVVNY--GSSSKAAEEVVAELKKLGAQGVAIQADIS 81
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIA----FKVNSSEPFGSQALHTMRTNYFALIDV 103
+ + AL D + GG+D +++N+ + + E F N V
Sbjct: 82 KPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFD----KVFNLNTRGQFFV 137
Query: 104 CDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
R GR++ SS +
Sbjct: 138 AQQGLKHCRRGGRIILTSSIAAVM------------------------------------ 161
Query: 164 SHTKGGWPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSG 219
G PN + YA +K V A + VNC+ PG V TDM
Sbjct: 162 ----TGIPNHALYAGSKAAVEGFC---RAFAVDCGAKGVT----VNCIAPGGVKTDMFDE 210
Query: 220 KGPLTIDQD 228
Sbjct: 211 NSWHYAPGG 219
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 74.6 bits (184), Expect = 4e-16
Identities = 35/234 (14%), Positives = 71/234 (30%), Gaps = 68/234 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------KLDILDK 49
+TG G+G G+ L G + +R + E++ + D+ D
Sbjct: 31 ITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDP 88
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT-MRTNYFALIDVCDILF 108
+ ++ L G ++++NNAA F ++ +E A T V +
Sbjct: 89 DMVQNTVSELIKVAGHPNIVINNAAGNF-ISPTERLSPNAWKTITDIVLNGTAFVTLEIG 147
Query: 109 P-LLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSH 165
L+++ +++++
Sbjct: 148 KQLIKAQKGAAFLSITTIYAET-------------------------------------- 169
Query: 166 TKGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
G A+ K GV +S +L + +R N + PG + T
Sbjct: 170 --GSGFVVPSASAKAGVEAMS---KSLAAEWGKYGMR----FNVIQPGPIKTKG 214
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 73.4 bits (181), Expect = 7e-16
Identities = 43/235 (18%), Positives = 67/235 (28%), Gaps = 72/235 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
+TG G+G +V + + G + + + A R +E D+ K
Sbjct: 10 ITGGASGLGRALVDRFVAE--GARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQK 67
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDV-------C-- 104
+ A G +D L+ NA I + S + + + V
Sbjct: 68 RAAERCLAAFGKIDTLIPNAGIW---DYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVK 124
Query: 105 DILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
L L+ S G VV S+ G
Sbjct: 125 ACLPALVSSRGSVVFTISNAGF-------------------------------------- 146
Query: 165 HTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
Y ATK V + + A +R VN V PG +NTD+
Sbjct: 147 --YPNGGGPLYTATKHAVVGLVRQMAFELA----PHVR----VNGVAPGGMNTDL 191
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 72.9 bits (180), Expect = 8e-16
Identities = 44/236 (18%), Positives = 70/236 (29%), Gaps = 82/236 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL----QKLDILDKNSIKAL 55
+T A +GIG ++ G + T + S+ QE + + LD+ K I
Sbjct: 11 LTAAAQGIGQAAALAFARE--GAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQF 68
Query: 56 HDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------CDI 106
+ E +DVL N A G+ + + +++
Sbjct: 69 AN----EVERLDVLFNVAGFV-------HHGT--VLDCEEKDWDFSMNLNVRSMYLMIKA 115
Query: 107 LFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
P + + G ++N+SS +
Sbjct: 116 FLPKMLAQKSGNIINMSSVASSV------------------------------------- 138
Query: 165 HTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
G N Y+ TK V TK Q IR NCV PG V+T
Sbjct: 139 ---KGVVNRCVYSTTKAAVIGLTKSVAADFI---QQGIR----CNCVCPGTVDTPS 184
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 72.9 bits (180), Expect = 9e-16
Identities = 46/242 (19%), Positives = 77/242 (31%), Gaps = 84/242 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
+TGA G G G+ K + G + + RD + + ++ DI + +
Sbjct: 14 ITGAGSGFGEGMAKRFAKG--GAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVD 71
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------C 104
A + ++ G VD+LVNNA I K + + F ++ V
Sbjct: 72 AAVEAALSKFGKVDILVNNAGIGHKPQN--------AELVEPEEFDRIVGVNVRGVYLMT 123
Query: 105 DILFPLLRSHGR------VVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVE 158
L P + +G ++NV+S+
Sbjct: 124 SKLIPHFKENGAKGQECVILNVASTGAGR------------------------------- 152
Query: 159 LAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNT 214
PN + Y ATK V TK ++ A IR V ++P T
Sbjct: 153 ----------PRPNLAWYNATKGWVVSVTKALAIELA---PAKIR----VVALNPVAGET 195
Query: 215 DM 216
+
Sbjct: 196 PL 197
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 72.7 bits (179), Expect = 9e-16
Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 61/226 (26%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKLDILDKNSIKALH 56
V G +G I++ + G I L+A D + + + +++
Sbjct: 8 VYGGKGALGSAILEFFKKN--GYTVLNIDLSANDQADSNILV----DGNKNWTEQEQSIL 61
Query: 57 DHLEAE--HGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDILFPLLRS 113
+ + VD + A ++S + ++ + ++ + L+
Sbjct: 62 EQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP 121
Query: 114 HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPN- 172
G + ++ G P+
Sbjct: 122 GGLLQLTGAAAAM-----------------------------------------GPTPSM 140
Query: 173 SAYAATKLGVTKLSFLQHALLSQD--AIREDLVVNCVHPGYVNTDM 216
Y K V L+ + L+ + ++ V + P ++T M
Sbjct: 141 IGYGMAKAAVHHLT----SSLAAKDSGLPDNSAVLTIMPVTLDTPM 182
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 72.2 bits (178), Expect = 1e-15
Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 75/235 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQK------LDILDKNSIKA 54
+TGA+ G+G + K + LT R S+ L D+ ++
Sbjct: 6 ITGASSGLGAELAKLYDAEGKATY-LTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQ 64
Query: 55 LHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQ---ALHTM-RTNYFALIDVCDILFPL 110
L + L++ +V++A Q + T+ N + I+V L
Sbjct: 65 LFEQLDSI---PSTVVHSAGSG----YFGLLQEQDPEQIQTLIENNLSSAINVLRELVKR 117
Query: 111 LRSH-GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGG 169
+ VV + S+
Sbjct: 118 YKDQPVNVVMIMSTAAQQ-----------------------------------------P 136
Query: 170 WPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV-----VNCVHPGYVNTDMSS 218
+ Y A K V L +++R +L + V+PG + T+
Sbjct: 137 KAQESTYCAVKWAVKGLI---------ESVRLELKGKPMKIIAVYPGGMATEFWE 182
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 72.9 bits (180), Expect = 1e-15
Identities = 44/237 (18%), Positives = 77/237 (32%), Gaps = 77/237 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
+TGA GIG I G + ++ +A ++++Q + DI +
Sbjct: 16 ITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQ 73
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAI----AFKVNSSEPFGSQALHTMRTNYFALIDVCDI 106
+ AL D ++ G VD+LVNNA F + F N F+ + +
Sbjct: 74 ELSALADFAISKLGKVDILVNNAGGGGPKPFDM-PMADFRR----AYELNVFSFFHLSQL 128
Query: 107 LFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
+ P + G ++ ++S
Sbjct: 129 VAPEMEKNGGGVILTITSMAAEN------------------------------------- 151
Query: 165 HTKGGWPN-SAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDM 216
N ++YA++K + A L + IR VN + PG + TD
Sbjct: 152 ----KNINMTSYASSKAAASHLVR----NMAFDLGEKNIR----VNGIAPGAILTDA 196
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 73.0 bits (180), Expect = 1e-15
Identities = 47/243 (19%), Positives = 79/243 (32%), Gaps = 86/243 (35%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTGA+ GIG ++ G + +TAR+ + E +++ D+ D+
Sbjct: 13 VTGASSGIGRAAALLFARE--GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEA 70
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFALIDVCDI 106
+AL + GG+D NNA + + S ++ T+ TN L
Sbjct: 71 LHEALVELAVRRFGGLDTAFNNAGA---LGAMGEISSLSVEGWRETLDTN---LTSA--- 121
Query: 107 LF-------PLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFV 157
F P + + G + SS GH
Sbjct: 122 -FLAAKYQVPAIAALGGGSLTFTSSFVGHT------------------------------ 150
Query: 158 ELAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVN 213
G+ + YAA+K G+ + ++ IR VN + PG +
Sbjct: 151 ----------AGFAGVAPYAASKAGLIGLVQALAVELG---ARGIR----VNALLPGGTD 193
Query: 214 TDM 216
T
Sbjct: 194 TPA 196
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 72.2 bits (178), Expect = 2e-15
Identities = 38/235 (16%), Positives = 68/235 (28%), Gaps = 71/235 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL-----------DILD 48
VT + G+G+ L + G + L +R+ + + A ++ L DI +
Sbjct: 12 VTAGSSGLGFASALELARN--GARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE 69
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIA----FKVNSSEPFGSQALHTMRTNYFALIDVC 104
I L + + GG D+LV + F E + + R + + V
Sbjct: 70 PGDIDRLFEKAR-DLGGADILVYSTGGPRPGRFMELGVEDW----DESYRLLARSAVWVG 124
Query: 105 DILFPLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
+ GR+V + S
Sbjct: 125 RRAAEQMVEKGWGRMVYIGSVTL------------------------------------- 147
Query: 163 GSHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
W + A +L V + L+ + + VN V P + TD
Sbjct: 148 ----LRPWQDLALSNIMRLPVIGVV----RTLALELAPHGVTVNAVLPSLILTDR 194
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 72.3 bits (178), Expect = 2e-15
Identities = 45/242 (18%), Positives = 76/242 (31%), Gaps = 87/242 (35%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ-----------KLDILD 48
VTGA +GIG + L+ + G + L + G + L + D+ D
Sbjct: 12 VTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD 69
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIA--------FKVNSSEPF-GSQ-ALHTMRTNYF 98
+ ++ + G +D+LVNNA + ++N G+ L M
Sbjct: 70 QQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNG 129
Query: 99 ALIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVE 158
G ++N+SS G +
Sbjct: 130 G-------------EGGIIINMSSLAGLM------------------------------- 145
Query: 159 LAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNT 214
Y A+K G+ T+ S A L +R +N + PG+VNT
Sbjct: 146 ----------PVAQQPVYCASKHGIVGFTR-SAALAANLMNSGVR----LNAICPGFVNT 190
Query: 215 DM 216
+
Sbjct: 191 AI 192
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 72.2 bits (178), Expect = 2e-15
Identities = 37/236 (15%), Positives = 74/236 (31%), Gaps = 76/236 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL-----------DILD 48
VTG+ GIG I L+ + G + + R E +++++ D+
Sbjct: 15 VTGSTAGIGKAIATSLVAE--GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT 72
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQA-LHTMRTNYFALIDVCDIL 107
+ + + ++ VD+L+NN I F+ + N + + +
Sbjct: 73 EQGCQDV----IEKYPKVDILINNLGI-FEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSY 127
Query: 108 FPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSH 165
+ R GRV+ ++S
Sbjct: 128 LKKMIERKEGRVIFIASEAA---------------------------------------- 147
Query: 166 TKGGWPN-SAYAATK---LGVTK-LSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+ Y+ATK L +++ L+ L + + VN + PG T+
Sbjct: 148 -IMPSQEMAHYSATKTMQLSLSRSLA----ELTTGTNVT----VNTIMPGSTLTEG 194
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 71.8 bits (177), Expect = 2e-15
Identities = 44/240 (18%), Positives = 69/240 (28%), Gaps = 70/240 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDA---------SRGQEALEKLQKLDIL 47
V GA + IG Q+ G + Y A + G+ AL K D+
Sbjct: 13 VAGAGRDIGRACAIRFAQE--GANVVLTYNGAAEGAATAVAEIEKLGRSAL--AIKADLT 68
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDI 106
+ ++A + G + LV+ A + H + N +L
Sbjct: 69 NAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKT 128
Query: 107 LFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
P + G +V SS G
Sbjct: 129 ALPKMAKGGAIVTFSSQAGRD--------------------------------------- 149
Query: 167 KGGWPNSA-YAATKLGVTKLSFLQHALLSQD---AIREDLVVNCVHPGYVNTDMSSGKGP 222
GG P + YA +K V + L+++ IR VN V PG ++T
Sbjct: 150 -GGGPGALAYATSKGAVMTFT----RGLAKEVGPKIR----VNAVCPGMISTTFHDTFTK 200
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 71.4 bits (176), Expect = 3e-15
Identities = 52/246 (21%), Positives = 72/246 (29%), Gaps = 92/246 (37%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------KLDILDK 49
VTG KGIG GI + G + + R + + L + D+ D+
Sbjct: 15 VTGGTKGIGRGIATVFARA--GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDR 72
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV----- 103
AL E GG+DV+ NA + F L TM + V
Sbjct: 73 AQCDALAGRAVEEFGGIDVVCANAGV---------FPDAPLATMTPEQLNGIFAVNVNGT 123
Query: 104 --C--DILFPLLRS-HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVE 158
L L+ S GRVV SS G +
Sbjct: 124 FYAVQACLDALIASGSGRVVLTSSITGPI------------------------------- 152
Query: 159 LAQDGSHTKG--GWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPG 210
G GW + Y ATK + L+ I VN + PG
Sbjct: 153 --------TGYPGWSH--YGATKAAQLGFMR------TAAIELAPHKIT----VNAIMPG 192
Query: 211 YVNTDM 216
+ T+
Sbjct: 193 NIMTEG 198
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 71.4 bits (176), Expect = 4e-15
Identities = 47/229 (20%), Positives = 70/229 (30%), Gaps = 62/229 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL---------DILDKN 50
VTGA GIG I G + G + R +E +++ D+ D
Sbjct: 36 VTGAGSGIGRAIAHGYARA--GAHVLAWGRTDG-VKEVADEIADGGGSAEAVVADLADLE 92
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT-MRTNYFALIDVCDILFP 109
+ + L VDVLVNNA I +E + N A +
Sbjct: 93 GAANVAEELA-ATRRVDVLVNNAGII-ARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGT 150
Query: 110 LL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
+ GR+V ++S
Sbjct: 151 AMLAHGSGRIVTIASMLSFQ---------------------------------------- 170
Query: 168 GGWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
GG +AYAA+K V L+ + + + VN + PGYV T
Sbjct: 171 GGRNVAAYAASKHAVVGLTRALASEWAGRGVG----VNALAPGYVVTAN 215
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 71.4 bits (176), Expect = 4e-15
Identities = 51/238 (21%), Positives = 81/238 (34%), Gaps = 67/238 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQ-FDGII-YLTARDA---------SRGQEALEKLQKLDILDK 49
VTGA++GIG I K L I Y ++ S G A ++
Sbjct: 12 VTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAF--SIGANLESL 69
Query: 50 NSIKALHDHLEAE------HGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALID 102
+ ++AL+ L+ E D+L+NNA I E Q + N A
Sbjct: 70 HGVEALYSSLDNELQNRTGSTKFDILINNAGIG-PGAFIEETTEQFFDRMVSVNAKAPFF 128
Query: 103 VCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQD 162
+ LR + R++N+SS+ +
Sbjct: 129 IIQQALSRLRDNSRIINISSAATRI----------------------------------- 153
Query: 163 GSHTKGGWPN-SAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
P+ AY+ TK + ++F L I VN + PG+V TDM++
Sbjct: 154 ------SLPDFIAYSMTKGAINTMTFTLAKQLGARGIT----VNAILPGFVKTDMNAE 201
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 71.2 bits (175), Expect = 4e-15
Identities = 23/227 (10%), Positives = 47/227 (20%), Gaps = 63/227 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKLDILDKNSIKALH 56
V G +G V+ I + + + ++ ++
Sbjct: 12 VYGGRGALGSRCVQAFRA--RNWWVASIDVVENEEASASVIVK--MTDSFTEQADQVTAE 67
Query: 57 DHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVCDILFPLLRSHG 115
VD ++ A N+ + + + + + L+ G
Sbjct: 68 VGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGG 127
Query: 116 RVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPN-SA 174
+ + G P
Sbjct: 128 LLTLAGAKAAL-----------------------------------------DGTPGMIG 146
Query: 175 YAATKLGVTKLSFLQHAL---LSQD--AIREDLVVNCVHPGYVNTDM 216
Y K V H L L+ + V P ++T M
Sbjct: 147 YGMAKGAV-------HQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM 186
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 71.4 bits (176), Expect = 4e-15
Identities = 45/247 (18%), Positives = 71/247 (28%), Gaps = 95/247 (38%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKL---------DILDKNS 51
VTG+++G+G L + I+ AR E E+++KL ++
Sbjct: 9 VTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAK 68
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQ-ALHTM 93
IK + ++ G +DV VNNAA +N+ +Q A M
Sbjct: 69 IKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLM 128
Query: 94 RTNYFALIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALM 153
N G +V++SS
Sbjct: 129 EKN----------------GGGHIVSISSLGSIR-------------------------- 146
Query: 154 NEFVELAQDGSHTKGGWPNSA-YAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHP 209
N +K + L+ L LS I VN V
Sbjct: 147 ---------------YLENYTTVGVSKAALEALT---RYLAVELSPKQII----VNAVSG 184
Query: 210 GYVNTDM 216
G ++TD
Sbjct: 185 GAIDTDA 191
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 71.1 bits (175), Expect = 4e-15
Identities = 43/242 (17%), Positives = 75/242 (30%), Gaps = 85/242 (35%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHL 59
+TGA++GIG G+V+ + + T+R + DI + +
Sbjct: 33 ITGASQGIGAGLVRAYRDR--NYRVVATSRSIKPSADPDIHTVAGDISKPETADRIVREG 90
Query: 60 EAEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQA-LHTMRTNYFALI 101
G +D LVNNA + VN + F +Q M
Sbjct: 91 IERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEM-------- 142
Query: 102 DVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQ 161
L + G +V++++S
Sbjct: 143 --------LKQGSGHIVSITTSLVD----------------------------------- 159
Query: 162 DGSHTKGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSS 218
G P++ + TK G+ ++ +L S+ +R VN V PG + T M
Sbjct: 160 ---QPMVGMPSALASLTKGGLNAVT---RSLAMEFSRSGVR----VNAVSPGVIKTPMHP 209
Query: 219 GK 220
+
Sbjct: 210 AE 211
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 71.1 bits (175), Expect = 4e-15
Identities = 53/235 (22%), Positives = 83/235 (35%), Gaps = 70/235 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ----------KLDILDKN 50
VTG+ GIG GI L Q I+ DA+ ++ L D+
Sbjct: 9 VTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGE 68
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGS----QALHTMRTNYFALIDVCDI 106
+++ L D+ + G +D+LVNNA I E F + L + F
Sbjct: 69 AVRGLVDNAVRQMGRIDILVNNAGIQ-HTALIEDFPTEKWDAILALNLSAVFHGTAAA-- 125
Query: 107 LFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
P + + GR++N++S+ G + S
Sbjct: 126 -LPHMKKQGFGRIINIASAHGLV-----------------------------------AS 149
Query: 165 HTKGGWPNSAYAATK---LGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
K SAY A K +G TK++ L+ A I N + PG+V T +
Sbjct: 150 ANK-----SAYVAAKHGVVGFTKVTALETA---GQGIT----ANAICPGWVRTPL 192
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 71.1 bits (175), Expect = 5e-15
Identities = 46/240 (19%), Positives = 79/240 (32%), Gaps = 76/240 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQ---------KLDIL 47
VTG ++GIG + + + G + Y A + + + D+
Sbjct: 31 VTGGSRGIGAAVCRLAAR--QGWRVGVNY--AANREAADAVVAAITESGGEAVAIPGDVG 86
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFALIDVC-D 105
+ I A+ ++ + G +D LVNNA I + + + +R N I +
Sbjct: 87 NAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAE 146
Query: 106 ILFPLLRSH----GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQ 161
+ + R + G +VNVSS L
Sbjct: 147 AVRRMSRLYSGQGGAIVNVSSMAAIL---------------------------------- 172
Query: 162 DGSHTKGGWPN--SAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
G YAA+K + + L ++ + IR VN V PG + TD+
Sbjct: 173 -------GSATQYVDYAASKAAIDTFT---IGLAREVAAEGIR----VNAVRPGIIETDL 218
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 70.3 bits (173), Expect = 7e-15
Identities = 40/224 (17%), Positives = 75/224 (33%), Gaps = 65/224 (29%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHL 59
V A++GIG + L Q+ G + + AR+ + + + D+ + D L
Sbjct: 24 VLAASRGIGRAVADVLSQE--GAEVTICARNEELLKRSGHRYVVCDL------RKDLDLL 75
Query: 60 EAEHGGVDVLVNNAAI----AFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLL--RS 113
+ VD+LV NA F ++E F +A+ ++ N ++ P + +
Sbjct: 76 FEKVKEVDILVLNAGGPKAGFFDELTNEDF-KEAIDSLFLNMIKIVRNY---LPAMKEKG 131
Query: 114 HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNS 173
GR+V ++S N
Sbjct: 132 WGRIVAITSFSV-----------------------------------------ISPIENL 150
Query: 174 A-YAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+ ++ +T LS + + VNCV PG+ T+
Sbjct: 151 YTSNSARMALTGFL----KTLSFEVAPYGITVNCVAPGWTETER 190
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 70.2 bits (173), Expect = 7e-15
Identities = 48/236 (20%), Positives = 85/236 (36%), Gaps = 81/236 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL-QKLDILDKNSIKALHDH 58
VTG ++GIG I + L+ + G + + +R+ ++L + D L+K+ K L
Sbjct: 7 VTGGSRGIGRAIAEALVAR--GYRVAIASRNPEEAAQSLGAVPLPTD-LEKDDPKGLVKR 63
Query: 59 LEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV-CDILFPLLRS--- 113
GG+ VLV+ AA+ + + + + ++ + D+ F L ++
Sbjct: 64 ALEALGGLHVLVHAAAVNVR---------KPALELSYEEWRRVLYLHLDVAFLLAQAAAP 114
Query: 114 ------HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
GRV+ + S + + T
Sbjct: 115 HMAEAGWGRVLFIGS----------------VT-----------------------TFTA 135
Query: 168 GGWPN-SAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
GG AY K + T+ AL ++ IR VN + PGYV T+
Sbjct: 136 GGPVPIPAYTTAKTALLGLTR------ALAKEWARLGIR----VNLLCPGYVETEF 181
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 70.2 bits (173), Expect = 8e-15
Identities = 38/249 (15%), Positives = 84/249 (33%), Gaps = 82/249 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQKL---------DILDKN 50
+TG + G+G G+ ++ G + +T R + +EA ++++ D+ + +
Sbjct: 11 ITGGSSGMGKGMATRFAKE--GARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTD 68
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------ 103
I+ + + ++ + G +D+L+NNAA F + N + ++I++
Sbjct: 69 DIQKMIEQIDEKFGRIDILINNAAGNFIC---------PAEDLSVNGWNSVINIVLNGTF 119
Query: 104 --CDILFPLLRSH---GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVE 158
+ G ++N+ ++
Sbjct: 120 YCSQAIGKYWIEKGIKGNIINMVATYAW-------------------------------- 147
Query: 159 LAQDGSHTKGGWPNSAYAATKLGVTKLSFLQHA---LLSQDAIREDLVVNCVHPGYVNTD 215
G AA K GV L+ + + IR VN + PG +
Sbjct: 148 --------DAGPGVIHSAAAKAGV--LAMTKTLAVEWGRKYGIR----VNAIAPGPIERT 193
Query: 216 MSSGKGPLT 224
+ K ++
Sbjct: 194 GGADKLWIS 202
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 70.6 bits (174), Expect = 8e-15
Identities = 45/248 (18%), Positives = 77/248 (31%), Gaps = 96/248 (38%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
+TG++ G+G + + ++ LE+++ K D+ ++
Sbjct: 12 ITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESD 71
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQ-ALHTM 93
+ L E G +DV++NNA + N + F GS+ A+
Sbjct: 72 VINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYF 131
Query: 94 RTNYFALIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALM 153
N G V+N+SS +
Sbjct: 132 VEN---------------DIKGTVINMSSVHEKI-------------------------- 150
Query: 154 NEFVELAQDGSHTKGGWPNSA-YAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVH 208
WP YAA+K G+ T+ AL + IR VN +
Sbjct: 151 ---------------PWPLFVHYAASKGGMKLMTETL----ALEYAPKGIR----VNNIG 187
Query: 209 PGYVNTDM 216
PG +NT +
Sbjct: 188 PGAINTPI 195
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 70.7 bits (174), Expect = 1e-14
Identities = 50/229 (21%), Positives = 78/229 (34%), Gaps = 59/229 (25%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTA--RDASRGQEALEK------LQKLDILD 48
VTG + GIG ++ G I YL A DA + + +E+ L D+ D
Sbjct: 54 VTGGDSGIGRAAAIAYARE--GADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSD 111
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL-HTMRTNYFALIDVCDIL 107
++ ++L GG+D+L A + + S+ T N FAL +
Sbjct: 112 ESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEA 171
Query: 108 FPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTK 167
PLL ++ SS + + LL
Sbjct: 172 IPLLPKGASIITTSS-------IQAYQPSPHLL--------------------------- 197
Query: 168 GGWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
YAATK + S +++ IR VN V PG + T +
Sbjct: 198 ------DYAATKAAILNYSRGLAKQVAEKGIR----VNIVAPGPIWTAL 236
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 70.3 bits (173), Expect = 1e-14
Identities = 50/240 (20%), Positives = 76/240 (31%), Gaps = 63/240 (26%)
Query: 1 VTGANKGIGYGIVKGL------------IQQFDGIIYL--TARDASRGQEALEKL----- 41
VTG +G G L + Y T+RD +EK
Sbjct: 15 VTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAY 74
Query: 42 -QKLDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALH-TMRTNYFA 99
++D+ D+ ++ + AE G +DV+V NA I QA ++
Sbjct: 75 TAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGIC---PLGAHLPVQAFADAFDVDFVG 131
Query: 100 LIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVEL 159
+I+ P L S ++ S G L+
Sbjct: 132 VINTVHAALPYLTSGASIITTGSVAG--------------------------LIAAAQPP 165
Query: 160 AQDGSHTKGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
G GG + Y+ K V + L L+ +IR N +HP VNTDM
Sbjct: 166 GAGGPQGPGG---AGYSYAKQLVDSYT---LQLAAQLAPQSIR----ANVIHPTNVNTDM 215
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 69.9 bits (172), Expect = 1e-14
Identities = 44/236 (18%), Positives = 73/236 (30%), Gaps = 80/236 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
VTGA GIG + ++ G + R+ EA+ L D+ D +++
Sbjct: 11 VTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVE 68
Query: 54 ALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV--------C 104
A+ E G + + + A +A S + + ++ V
Sbjct: 69 AVFAEALEEFGRLHGVAHFAGVA---------HSALSWNLPLEAWEKVLRVNLTGSFLVA 119
Query: 105 DILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
+L G +V S G
Sbjct: 120 RKAGEVLEEGGSLVLTGSVAG--------------------------------------- 140
Query: 165 HTKGGWPNSAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDM 216
G + + YAA KLGV + AL L++ +R VN + PG + T M
Sbjct: 141 --LGAFGLAHYAAGKLGVVGLAR----TLALELARKGVR----VNVLLPGLIQTPM 186
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 69.9 bits (172), Expect = 1e-14
Identities = 56/249 (22%), Positives = 79/249 (31%), Gaps = 97/249 (38%)
Query: 1 VTGANKGIGYGIVKGLIQQ-FDGIIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTG +GIG GI + L FD + + + E ++ ++ LD+ DK
Sbjct: 7 VTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKA 66
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQA-LHT 92
+ + D + GG DVLVNNA IA + VN F G QA
Sbjct: 67 NFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRK 126
Query: 93 MRTNYFALIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSAL 152
L G+++N +S
Sbjct: 127 FDE---------------LGVKGKIINAASIAAIQ------------------------- 146
Query: 153 MNEFVELAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCV 207
G+P SAY+ TK V T+ + A L+ VN
Sbjct: 147 ----------------GFPILSAYSTTKFAVRGLTQAA----AQELAPKGHT----VNAY 182
Query: 208 HPGYVNTDM 216
PG V T M
Sbjct: 183 APGIVGTGM 191
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 69.9 bits (172), Expect = 1e-14
Identities = 52/242 (21%), Positives = 86/242 (35%), Gaps = 84/242 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI-IYLTARDASRGQEALEKLQK-------------LDI 46
+TGA+ GIG GI + L G I L AR +R +E + LD+
Sbjct: 9 ITGASGGIGEGIARELGVA--GAKILLGARRQAR----IEAIATEIRDAGGTALAQVLDV 62
Query: 47 LDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL---HTM-RTNYFALID 102
D++S+ A G +DVLVNNA + P + + M N ++
Sbjct: 63 TDRHSVAAFAQAAVDTWGRIDVLVNNAGVM----PLSPLAAVKVDEWERMIDVNIKGVLW 118
Query: 103 VCDILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELA 160
+ P++ + G+++N+ S
Sbjct: 119 GIGAVLPIMEAQRSGQIINIGSIGALSVV------------------------------- 147
Query: 161 QDGSHTKGGWPNSA-YAATKLGVTKLSFLQHALLSQDAIREDLV---VNCVHPGYVNTDM 216
P +A Y ATK V +S D +R++ V CV+PG V +++
Sbjct: 148 ----------PTAAVYCATKFAVRAIS---------DGLRQESTNIRVTCVNPGVVESEL 188
Query: 217 SS 218
+
Sbjct: 189 AG 190
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 69.5 bits (171), Expect = 2e-14
Identities = 49/249 (19%), Positives = 82/249 (32%), Gaps = 99/249 (39%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTGA +GIG I L++ DG + + + + + ++ K+D+ D++
Sbjct: 7 VTGAGQGIGKAIALRLVK--DGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRD 64
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQA-LHT 92
+ A + GG DV+VNNA +A + +N G QA +
Sbjct: 65 QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEA 124
Query: 93 MRTNYFALIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSAL 152
+ G+++N S GH+
Sbjct: 125 FKK---------------EGHGGKIINACSQAGHV------------------------- 144
Query: 153 MNEFVELAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCV 207
G P + Y+++K V T+ + A L+ I VN
Sbjct: 145 ----------------GNPELAVYSSSKFAVRGLTQTA----ARDLAPLGIT----VNGY 180
Query: 208 HPGYVNTDM 216
PG V T M
Sbjct: 181 CPGIVKTPM 189
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 69.5 bits (171), Expect = 2e-14
Identities = 44/243 (18%), Positives = 74/243 (30%), Gaps = 85/243 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ-----------KLDILD 48
+TG G+G L + G + L + + + + D+ D
Sbjct: 18 ITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD 75
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV---- 103
+ ++A G +D NNA I K N + F ++ +
Sbjct: 76 EAQVEAYVTATTERFGRIDGFFNNAGIEGKQNP--------TESFTAAEFDKVVSINLRG 127
Query: 104 ----CDILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFV 157
+ + ++R G VVN +S G
Sbjct: 128 VFLGLEKVLKIMREQGSGMVVNTASVGGIR------------------------------ 157
Query: 158 ELAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVN 213
G N S YAA K GV T+ S +++ + IR +N + PG +
Sbjct: 158 -----------GIGNQSGYAAAKHGVVGLTRNSAVEYG---RYGIR----INAIAPGAIW 199
Query: 214 TDM 216
T M
Sbjct: 200 TPM 202
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 69.2 bits (170), Expect = 2e-14
Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 66/238 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQK---------LDILDKN 50
V GA IG I K + G ++ R+ + + +++ LD +++
Sbjct: 12 VIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNED 69
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPL 110
+ A + +A H ++V + N E +A L
Sbjct: 70 EVTAFLNAADA-HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARL 128
Query: 111 L--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
+ G++ ++
Sbjct: 129 MLAHGQGKIFFTGATASLR----------------------------------------- 147
Query: 169 GWPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
G +A+A+ K G+ ++ ++ L I V + + V+T +
Sbjct: 148 GGSGFAAFASAKFGLRAVA---QSMARELMPKNIH---VAHLIIDSGVDTAWVRERRE 199
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 69.1 bits (170), Expect = 2e-14
Identities = 57/231 (24%), Positives = 85/231 (36%), Gaps = 66/231 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKL------QKLDILDKNSIKA 54
VTG+ GIG GI + L + I+ D + + + D+ D I+A
Sbjct: 9 VTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEA 68
Query: 55 LHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFG----SQALHTMRTNYFALIDVCDILFPL 110
L E E GGVD+LVNNA I V E F + + + F + P
Sbjct: 69 LFALAEREFGGVDILVNNAGIQ-HVAPVEQFPLESWDKIIALNLSAVFHGTRLA---LPG 124
Query: 111 L--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
+ R+ GR++N++S G + GS K
Sbjct: 125 MRARNWGRIINIASVHGLV-----------------------------------GSTGK- 148
Query: 169 GWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
+AY A K GV TK+ L+ A + N + PG+V T +
Sbjct: 149 ----AAYVAAKHGVVGLTKVVGLETA---TSNVT----CNAICPGWVLTPL 188
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 69.1 bits (170), Expect = 2e-14
Identities = 42/244 (17%), Positives = 77/244 (31%), Gaps = 79/244 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTGA GIG I + G + +T + + ++ + ++ D+
Sbjct: 17 VTGAAAGIGRAIAGTFAKA--GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQ 74
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAI----AFKVNSSEPFGSQALHTMRTNYFALIDVCDI 106
+A+ + G + VLVNNA F + F + N F+L + +
Sbjct: 75 HREAVIKAALDQFGKITVLVNNAGGGGPKPFDM-PMSDFEW----AFKLNLFSLFRLSQL 129
Query: 107 LFPLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
P ++ G ++N+SS G
Sbjct: 130 AAPHMQKAGGGAILNISSMAG--------------------------------------- 150
Query: 165 HTKGGWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDMSS 218
++Y ++K V T+ + + IR VN + PG + TD +
Sbjct: 151 -ENTNVRMASYGSSKAAVNHLTR------NIAFDVGPMGIR----VNAIAPGAIKTDALA 199
Query: 219 GKGP 222
Sbjct: 200 TVLT 203
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 68.8 bits (169), Expect = 3e-14
Identities = 35/236 (14%), Positives = 63/236 (26%), Gaps = 77/236 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ-----------KLDI-LD 48
A GIG + L+++ + D AL +L+ D+ +
Sbjct: 10 FVAALGGIGLDTSRELVKR--NLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP 67
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILF 108
K L + + VD+L+N A I + E T+ N+ L++ +
Sbjct: 68 VAESKKLLKKIFDQLKTVDILINGAGI-LDDHQIE-------RTIAINFTGLVNTTTAIL 119
Query: 109 PLLRSH-----GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
G + N+ S G
Sbjct: 120 DFWDKRKGGPGGIIANICSVTGF------------------------------------- 142
Query: 164 SHTKGGWPNSAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
Y+A+K V T S + + ++PG T +
Sbjct: 143 ---NAIHQVPVYSASKAAVVSFTN-SLAKL--APITGVT----AYSINPGITRTPL 188
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 68.8 bits (169), Expect = 3e-14
Identities = 47/236 (19%), Positives = 81/236 (34%), Gaps = 72/236 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ----------KLDILDKN 50
+TG+ GIG I + L + I+ + +++ D+ +
Sbjct: 30 ITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPS 89
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGS----QALHTMRTNYFALIDVCDI 106
I + + GG D+LVNNA + V E F + + ++ F I
Sbjct: 90 EIADMMAMVADRFGGADILVNNAGVQ-FVEKIEDFPVEQWDRIIAVNLSSSFHTIRGA-- 146
Query: 107 LFPLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGS 164
P ++ GR++N++S+ G +
Sbjct: 147 -IPPMKKKGWGRIINIASAHGLV------------------------------------- 168
Query: 165 HTKGGWPN-SAYAATK---LGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
P SAY A K +G+TK L+ A + + VN + PGYV T +
Sbjct: 169 ----ASPFKSAYVAAKHGIMGLTKTVALEVA---ESGVT----VNSICPGYVLTPL 213
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 68.8 bits (169), Expect = 4e-14
Identities = 45/244 (18%), Positives = 77/244 (31%), Gaps = 81/244 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
+TGA GIG L G + R + +E +++ + D+ D+
Sbjct: 33 ITGAGSGIGRATALALAAD--GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDEL 90
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------ 103
++ L + G +D++V NA I + + + ++ + I V
Sbjct: 91 QMRNAVRDLVLKFGHLDIVVANAGI------NGVWAP--IDDLKPFEWDETIAVNLRGTF 142
Query: 104 --CDILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVEL 159
+ P L+ G +V VSS G
Sbjct: 143 LTLHLTVPYLKQRGGGAIVVVSSING---------------------------------- 168
Query: 160 AQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
P +AY ATK + L+ + IR VN V PG + T+
Sbjct: 169 -----TRTFTTPGATAYTATKAAQVAIVQQLALELG---KHHIR----VNAVCPGAIETN 216
Query: 216 MSSG 219
+S
Sbjct: 217 ISDN 220
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 68.4 bits (168), Expect = 4e-14
Identities = 33/240 (13%), Positives = 63/240 (26%), Gaps = 87/240 (36%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEA---LEKLQKLDILDKNSIKALH 56
VT G G L + G + + E E +L + + L
Sbjct: 6 VTNVKHFGGMGSALRLSEA--GHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELI 63
Query: 57 DHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDI----LFPLLR 112
+ + + +G VDVLV+N A + + + + F L+
Sbjct: 64 EAVTSAYGQVDVLVSNDIFAPEFQ--------PIDKYAVEDYR--GAVEALQIRPFALVN 113
Query: 113 S---------HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
+ G ++ ++S+
Sbjct: 114 AVASQMKKRKSGHIIFITSATPFG------------------------------------ 137
Query: 164 SHTKGGWPN-SAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
W S Y + + G AL L + I V + P Y++++
Sbjct: 138 -----PWKELSTYTSARAGACTLAN------ALSKELGEYNIP----VFAIGPNYLHSED 182
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 68.4 bits (168), Expect = 4e-14
Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 63/227 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQ-FDGIIYLTARDASRGQEALEKLQ----KLDILDKNSIKAL 55
+TGA++ +G L++ + ++ R L + D + I A
Sbjct: 32 ITGASQRVGLHCALRLLEHGHR--VIISYRTEHASVTELRQAGAVALYGDFSCETGIMAF 89
Query: 56 HDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLRS-- 113
D L+ + + +V+NA+ + + + A + PLL +
Sbjct: 90 IDLLKTQTSSLRAVVHNASE-WLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE 148
Query: 114 HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNS 173
+V++S G
Sbjct: 149 VADIVHISDDVTRK-----------------------------------------GSSKH 167
Query: 174 A-YAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
Y ATK G+ T ++ VN + P +
Sbjct: 168 IAYCATKAGLESLTLS--FAARFAPL--VK----VNGIAPALLMFQP 206
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 68.4 bits (168), Expect = 5e-14
Identities = 44/233 (18%), Positives = 77/233 (33%), Gaps = 67/233 (28%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQK----------LDILDK 49
+TG GIG+ I + ++ G + +R R A KL +D+
Sbjct: 32 ITGGGSGIGFRIAEIFMRH--GCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAP 89
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHT-MRTNYFALIDVCDILF 108
++ A D E G +D+L+N AA F + + A T M + +V +L+
Sbjct: 90 PAVMAAVDQALKEFGRIDILINCAAGNF-LCPAGALSFNAFKTVMDIDTSGTFNVSRVLY 148
Query: 109 P-LLRSH-GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHT 166
R H G +VN++++ G+
Sbjct: 149 EKFFRDHGGVIVNITATLGN---------------------------------------- 168
Query: 167 KGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
+G + K V ++ L IR VN + PG ++
Sbjct: 169 RGQALQVHAGSAKAAVDAMT---RHLAVEWGPQNIR----VNSLAPGPISGTE 214
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 68.3 bits (168), Expect = 5e-14
Identities = 42/241 (17%), Positives = 69/241 (28%), Gaps = 83/241 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTGA GIG I K I+ R + +++L+ K D+ K
Sbjct: 12 VTGAGSGIGRAIAKKFALN--DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKK 69
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------ 103
++ + +DVL NNA I V + + + ++ V
Sbjct: 70 DVEEFVRRTFETYSRIDVLCNNAGIMDGVTP--------VAEVSDELWERVLAVNLYSAF 121
Query: 104 --CDILFPLLRSH--GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVEL 159
+ P++ G +VN +S G
Sbjct: 122 YSSRAVIPIMLKQGKGVIVNTASIAGIR-------------------------------- 149
Query: 160 AQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
G + Y K G+ T+ + IR V PG V T+
Sbjct: 150 ---------GGFAGAPYTVAKHGLIGLTRSIAAHYG---DQGIR----AVAVLPGTVKTN 193
Query: 216 M 216
+
Sbjct: 194 I 194
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 68.4 bits (168), Expect = 6e-14
Identities = 51/246 (20%), Positives = 72/246 (29%), Gaps = 92/246 (37%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------KLDILDK 49
VTG KGIG GI + G + + AR +L +LD+ D
Sbjct: 46 VTGGTKGIGRGIATVFARA--GANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDP 103
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV----- 103
S + G +DV+ NA I F L TM ++DV
Sbjct: 104 GSCADAARTVVDAFGALDVVCANAGI---------FPEARLDTMTPEQLSEVLDVNVKGT 154
Query: 104 --C--DILFPLLRS-HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVE 158
L PL S GRV+ SS G +
Sbjct: 155 VYTVQACLAPLTASGRGRVILTSSITGPV------------------------------- 183
Query: 159 LAQDGSHTKG--GWPNSAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPG 210
G GW + Y A+K + L+ + VN + PG
Sbjct: 184 --------TGYPGWSH--YGASKAAQLGFMR------TAAIELAPRGVT----VNAILPG 223
Query: 211 YVNTDM 216
+ T+
Sbjct: 224 NILTEG 229
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 68.4 bits (168), Expect = 6e-14
Identities = 49/244 (20%), Positives = 78/244 (31%), Gaps = 84/244 (34%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTG +GIG GI + L I DA + +L + D+ D +S
Sbjct: 34 VTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSS 93
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------- 103
+A D + AE G +D LVNNA IA ++ F ++ V
Sbjct: 94 HQATVDAVVAEFGRIDCLVNNAGIA-------SIVRDDFLDLKPENFDTIVGVNLRGTVF 146
Query: 104 C------DILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFV 157
+L R+ ++N++S +
Sbjct: 147 FTQAVLKAMLASDARASRSIINITSVSAVM------------------------------ 176
Query: 158 ELAQDGSHTKGGWPNSA-YAATKLGV---TKLSFLQHAL-LSQDAIREDLVVNCVHPGYV 212
P Y +K G+ ++ AL L++ I V V PG +
Sbjct: 177 -----------TSPERLDYCMSKAGLAAFSQGL----ALRLAETGIA----VFEVRPGII 217
Query: 213 NTDM 216
+DM
Sbjct: 218 RSDM 221
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 67.9 bits (167), Expect = 6e-14
Identities = 45/247 (18%), Positives = 71/247 (28%), Gaps = 98/247 (39%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKL------QKLDILDKNSIKA 54
+TG GIG I + + I A + A+ L K D+ ++A
Sbjct: 12 ITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEA 71
Query: 55 LHDHLEAEHGGVDVLVNNAAIA----------------FKVNSSEPF-GSQA-LHTMRTN 96
+ + G D+LVNNA I F++N F ++A + M+
Sbjct: 72 FGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKR- 130
Query: 97 YFALIDVCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEF 156
GR++N++S+ L
Sbjct: 131 ---------------NGWGRIINLTSTTYWL----------------------------- 146
Query: 157 VELAQDGSHTKGGWPNSA-YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHP 209
Y +TK T+ AL L +D I VN + P
Sbjct: 147 ------------KIEAYTHYISTKAANIGFTR------ALASDLGKDGIT----VNAIAP 184
Query: 210 GYVNTDM 216
V T
Sbjct: 185 SLVRTAT 191
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 67.2 bits (165), Expect = 1e-13
Identities = 42/244 (17%), Positives = 71/244 (29%), Gaps = 87/244 (35%)
Query: 1 VTGA-NKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------KLDILD 48
VT A GIG + + + G + ++ R E ++L D+
Sbjct: 27 VTAAAGTGIGSTTARRALLE--GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS 84
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV---- 103
++ AL + G +DVLVNNA + G + M + +++V
Sbjct: 85 TEAVDALITQTVEKAGRLDVLVNNAGLG---------GQTPVVDMTDEEWDRVLNVTLTS 135
Query: 104 ----CDILFPLLRSH---GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEF 156
R G +VN +S G
Sbjct: 136 VMRATRAALRYFRGVDHGGVIVNNASVLGWR----------------------------- 166
Query: 157 VELAQDGSHTKGGWPNSA-YAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYV 212
+ + YAA K GV T+ S ++ + +R +N V P
Sbjct: 167 ------------AQHSQSHYAAAKAGVMALTRCSAIEAV---EFGVR----INAVSPSIA 207
Query: 213 NTDM 216
Sbjct: 208 RHKF 211
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 66.4 bits (163), Expect = 2e-13
Identities = 43/247 (17%), Positives = 75/247 (30%), Gaps = 76/247 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKL---------DILDKNS 51
+TG+++GIG + + + + + E + ++ D+ +
Sbjct: 12 ITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEA 71
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIAFKVN-----SSEPFGSQALHTMRTNYFALIDVCDI 106
+ L D A+ GG+DVL+NNA + + M N +++
Sbjct: 72 CQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDA----VMDANIRSVVMTTKF 127
Query: 107 LFPLLRSH-------GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVEL 159
P L + V++ S GH
Sbjct: 128 ALPHLAAAAKASGQTSAVISTGSIAGH--------------------------------- 154
Query: 160 AQDGSHTKGGWPNSA-YAATKLGV---TKLSFLQHALLSQDAIREDLVVNCVHPGYVNTD 215
GG P + Y A K + K H +D +R N V PG V+T
Sbjct: 155 -------TGGGPGAGLYGAAKAFLHNVHKNWVDFHT---KDGVR----FNIVSPGTVDTA 200
Query: 216 MSSGKGP 222
+ K
Sbjct: 201 FHADKTQ 207
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 66.5 bits (163), Expect = 2e-13
Identities = 50/246 (20%), Positives = 78/246 (31%), Gaps = 92/246 (37%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTG + GIG + + L + G +Y ARDA A++ L+ D+ +
Sbjct: 29 VTGVSSGIGLAVARTLAAR--GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTD 86
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALID------- 102
+ A G + +LVN+A G + + ++D
Sbjct: 87 EVHAAVAAAVERFGPIGILVNSAGRN---------GGGETADLDDALWADVLDTNLTGVF 137
Query: 103 -----VCDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFV 157
V GR+VN++S+ G
Sbjct: 138 RVTREVLRAGGMREAGWGRIVNIASTGGKQ------------------------------ 167
Query: 158 ELAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPG 210
G + Y A+K GV TK ++ L++ I VN V PG
Sbjct: 168 -----------GVMYAAPYTASKHGVVGFTK------SVGFELAKTGIT----VNAVCPG 206
Query: 211 YVNTDM 216
YV T M
Sbjct: 207 YVETPM 212
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 66.5 bits (163), Expect = 3e-13
Identities = 47/249 (18%), Positives = 82/249 (32%), Gaps = 96/249 (38%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ--------------KLD 45
VTG GIG IVK L++ G + + +R R + A ++LQ + +
Sbjct: 23 VTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCN 80
Query: 46 ILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV- 103
I ++ + L G ++ LVNN F + + + A+++
Sbjct: 81 IRNEEEVNNLVKSTLDTFGKINFLVNNGGGQF---------LSPAEHISSKGWHAVLETN 131
Query: 104 -------CDILFP-LLRSH-GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMN 154
C ++ ++ H G +VN+
Sbjct: 132 LTGTFYMCKAVYSSWMKEHGGSIVNIIVP------------------------------- 160
Query: 155 EFVELAQDGSHTKGGWPNSA-YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCV 207
TK G+P + A + GV TK +L + IR +NCV
Sbjct: 161 -----------TKAGFPLAVHSGAARAGVYNLTK------SLALEWACSGIR----INCV 199
Query: 208 HPGYVNTDM 216
PG + +
Sbjct: 200 APGVIYSQT 208
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 66.1 bits (162), Expect = 3e-13
Identities = 35/241 (14%), Positives = 67/241 (27%), Gaps = 76/241 (31%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLT----ARDASRGQEALEKLQKL-------- 44
++G ++GIG I K + DG ++ + + A +++++
Sbjct: 14 ISGGSRGIGLAIAKRVAA--DGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIV 71
Query: 45 -DILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFA 99
DI D +++ A + GG+D+ VNNA+ L
Sbjct: 72 GDIRDGDAVAAAVAKTVEQFGGIDICVNNASAIN----LGSIEEVPLKRFDLMNGIQVRG 127
Query: 100 LIDVCDILFPLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFV 157
V P ++ + ++ +S
Sbjct: 128 TYAVSQSCIPHMKGRDNPHILTLSPPIRL------------------------------- 156
Query: 158 ELAQDGSHTKGGWPN-SAYAATKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTD 215
+ W + Y K G+T + L A L I N + P
Sbjct: 157 ---------EPKWLRPTPYMMAKYGMTLCA-LGIAEELRDAGIA----SNTLWPRTTVAT 202
Query: 216 M 216
Sbjct: 203 A 203
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 66.0 bits (162), Expect = 4e-13
Identities = 51/238 (21%), Positives = 84/238 (35%), Gaps = 66/238 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLT-ARDASRGQEALEK------LQKLDILDK 49
+TG + GIG + ++ G I YL DA+ ++ +EK L D+ D+
Sbjct: 52 ITGGDSGIGRAVSIAFAKE--GANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDE 109
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL-HTMRTNYFALIDVCDILF 108
K + + G +++LVNN A + E ++ L T R N F+ V
Sbjct: 110 QHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAAL 169
Query: 109 PLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKG 168
L+ ++N +S + + + L+
Sbjct: 170 SHLKQGDVIINTAS-------IVAYEGNETLI---------------------------- 194
Query: 169 GWPNSAYAATKLGV---TK-LSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
Y+ATK + T+ LS L Q IR VN V PG + T +
Sbjct: 195 -----DYSATKGAIVAFTRSLS----QSLVQKGIR----VNGVAPGPIWTPLIPSSFD 239
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 64.5 bits (158), Expect = 1e-12
Identities = 37/239 (15%), Positives = 68/239 (28%), Gaps = 78/239 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ--------KLDILDKNS 51
+TG GIG K ++ G + + GQ+ + D+
Sbjct: 21 ITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDED 78
Query: 52 IKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-ALIDV------- 103
++ L D A+HG +D++ N + ++ F ++D+
Sbjct: 79 VRNLVDTTIAKHGKLDIMFGNVGVL-------STTPYSILEAGNEDFKRVMDINVYGAFL 131
Query: 104 -CDILFPLLRSHGR--VVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELA 160
++ + +V +S
Sbjct: 132 VAKHAARVMIPAKKGSIVFTASISSFTA-------------------------------- 159
Query: 161 QDGSHTKGGWPNSAYAATK---LGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
G + Y ATK LG+T + + IR VNCV P V + +
Sbjct: 160 -------GEGVSHVYTATKHAVLGLTTSLCTELG---EYGIR----VNCVSPYIVASPL 204
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 63.7 bits (156), Expect = 2e-12
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHLE 60
VTG N+GIG I + L + +T R + + ++D+ D +++ +E
Sbjct: 20 VTGGNRGIGLAIAQRLAADGHKVA-VTHRGSGAPKGLFGV--EVDVTDSDAVDRAFTAVE 76
Query: 61 AEHGGVDVLVNNAAI 75
G V+VLV+NA +
Sbjct: 77 EHQGPVEVLVSNAGL 91
Score = 30.2 bits (69), Expect = 0.47
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YAA+K GV + ++ LS+ + N V PGY++TDM
Sbjct: 153 YAASKAGVIGMAR------SIARELSKANVT----ANVVAPGYIDTDM 190
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas;
oxidoreductase; 1.99A {Streptomyces coelicolor}
Length = 253
Score = 63.3 bits (155), Expect = 2e-12
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHLE 60
VTG N+GIG I + D + +T R + L K DI D ++ + +E
Sbjct: 26 VTGGNRGIGLAIARAFADAGDKVA-ITYRSGEPPEGFLAV--KCDITDTEQVEQAYKEIE 82
Query: 61 AEHGGVDVLVNNAAI 75
HG V+VL+ NA +
Sbjct: 83 ETHGPVEVLIANAGV 97
Score = 30.2 bits (69), Expect = 0.46
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YAA+K G+ + +L L I N V PG+V+TDM
Sbjct: 159 YAASKAGLVGFAR------SLARELGSRNIT----FNVVAPGFVDTDM 196
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
protein, NAD(P)-binding rossmann fold, csgid,
oxidoreductase; 1.95A {Francisella tularensis subsp}
Length = 247
Score = 62.9 bits (154), Expect = 3e-12
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTGA++GIG+ + L + ++ TA + ++ ++ L+I D S
Sbjct: 10 VTGASRGIGFEVAHALASKGATVV-GTATSQASAEKFENSMKEKGFKARGLVLNISDIES 68
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
I+ ++AE+ +D+LVNNA I
Sbjct: 69 IQNFFAEIKAENLAIDILVNNAGI 92
Score = 30.2 bits (69), Expect = 0.45
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y A K GV +K +L ++ I VN V PG++ TDM
Sbjct: 154 YCAAKAGVIGFSK------SLAYEVASRNIT----VNVVAPGFIATDM 191
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 63.0 bits (154), Expect = 5e-12
Identities = 44/256 (17%), Positives = 66/256 (25%), Gaps = 92/256 (35%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARD----------ASRGQEALEKLQKLDI 46
+TG + IG+ I L Q G + Y + A+R A+ L K D+
Sbjct: 16 ITGGARRIGHSIAVRLHQ--QGFRVVVHYRHSEGAAQRLVAELNAARAGSAV--LCKGDL 71
Query: 47 LDKNSI----KALHDHLEAEHGGVDVLVNNAAIAF--KVNSSEPFGSQALHTMRTNYF-A 99
+S+ + + D G DVLVNNA+ + + + A
Sbjct: 72 SLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAE 131
Query: 100 LIDV-------C--------DILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIK 144
L + VVN+
Sbjct: 132 LFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD---------------------- 169
Query: 145 SVEELSALMNEFVELAQDGSHTKGGWPNSA-YAATKLGVTKLSFLQHAL---LSQDAIRE 200
+ T P Y K + L+ A L+ IR
Sbjct: 170 -------------------AMTDLPLPGFCVYTMAKHALGGLT---RAAALELAPRHIR- 206
Query: 201 DLVVNCVHPGYVNTDM 216
VN V PG
Sbjct: 207 ---VNAVAPGLSLLPP 219
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 62.5 bits (153), Expect = 5e-12
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----KLDILDKNSIKAL 55
+TGA GIG ++ ++ G + + +EA E + +D+ D S++
Sbjct: 10 ITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERG 67
Query: 56 HDHLEAEHGGVDVLVNNAAI 75
A G +D +V+ A I
Sbjct: 68 FAEALAHLGRLDGVVHYAGI 87
Score = 31.3 bits (72), Expect = 0.17
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YAA+ GV T+ L L + IR VN + PG++ T M
Sbjct: 148 YAASMAGVVGLTR------TLALELGRWGIR----VNTLAPGFIETRM 185
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 62.6 bits (153), Expect = 6e-12
Identities = 35/241 (14%), Positives = 70/241 (29%), Gaps = 74/241 (30%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQ-------------K 43
+TGA++GIG I + DG I +A + + K
Sbjct: 11 ITGASRGIGLAIALRAAR--DGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALK 68
Query: 44 LDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQAL----HTMRTNYFA 99
DI +++ ++A GG+D+LVNNA+ + + + N
Sbjct: 69 CDIREEDQVRAAVAATVDTFGGIDILVNNASAIW----LRGTLDTPMKRFDLMQQVNARG 124
Query: 100 LIDVCDILFPLLRS--HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFV 157
P L + ++ ++
Sbjct: 125 SFVCAQACLPHLLQAPNPHILTLAPPPSL------------------------------- 153
Query: 158 ELAQDGSHTKGGWPNSAYAATKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPG-YVNTD 215
+ ++ Y K+G++ ++ L A + +N + P + TD
Sbjct: 154 -------NPAWWGAHTGYTLAKMGMSLVT-LGLAAEFGPQGVA----INALWPRTVIATD 201
Query: 216 M 216
Sbjct: 202 A 202
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 62.6 bits (153), Expect = 6e-12
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ------KLDILDKNSIKA 54
VTGA GIG I + Q I+ L + +E L ++ D+ SIK
Sbjct: 32 VTGATGGIGEAIARCFHAQ-GAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQ 90
Query: 55 LHDHLEAEHGGVDVLVNNAAI 75
L + E E G+D+LVNNA I
Sbjct: 91 LAEVAEREMEGIDILVNNAGI 111
Score = 29.8 bits (68), Expect = 0.58
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y A K G+ +K AL ++ I VNC+ PG++ + M
Sbjct: 173 YCAAKAGLIGFSK------ALAQEIASRNIT----VNCIAPGFIKSAM 210
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 62.2 bits (152), Expect = 8e-12
Identities = 46/253 (18%), Positives = 75/253 (29%), Gaps = 94/253 (37%)
Query: 1 VTGANKGIGYGIVKGL------------IQQFDGIIYLTARDASRGQEALEKLQKL---- 44
+TGA +G G + + + E + ++
Sbjct: 16 ITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRI 75
Query: 45 -----DILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF- 98
D D + ++ + D A G +D++V NA +A QA + F
Sbjct: 76 VAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVA---------APQAWDDITPEDFR 126
Query: 99 ALIDV--------CDILFPLLRSH---GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVE 147
++D+ P + G ++ +SS+ G
Sbjct: 127 DVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK-------------------- 166
Query: 148 ELSALMNEFVELAQDGSHTKGGWPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLV 203
P Y A+K VT L+ A L + +IR
Sbjct: 167 ---------------------MQPFMIHYTASKHAVTGLA---RAFAAELGKHSIR---- 198
Query: 204 VNCVHPGYVNTDM 216
VN VHPG VNT M
Sbjct: 199 VNSVHPGPVNTPM 211
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 61.7 bits (151), Expect = 1e-11
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ------KLDILDKNSIKA 54
VTGA++GIG I + L ++ +I TA S Q + L L++ + SI+A
Sbjct: 14 VTGASRGIGKAIAELLAERGAKVI-GTATSESGAQAISDYLGDNGKGMALNVTNPESIEA 72
Query: 55 LHDHLEAEHGGVDVLVNNAAI 75
+ + E GGVD+LVNNA I
Sbjct: 73 VLKAITDEFGGVDILVNNAGI 93
Score = 30.2 bits (69), Expect = 0.41
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YAA K GV TK ++ ++ + VN V PG++ TDM
Sbjct: 155 YAAAKAGVIGFTK------SMAREVASRGVT----VNTVAPGFIETDM 192
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 61.8 bits (151), Expect = 1e-11
Identities = 46/255 (18%), Positives = 76/255 (29%), Gaps = 94/255 (36%)
Query: 1 VTGANKGIGYGI---------------VKGLIQQFDGIIYLTARDASRGQEALEKLQKL- 44
VTGA +G G + I+ + A E + ++
Sbjct: 16 VTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN 75
Query: 45 --------DILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTN 96
D+ D +++KA D + G +D++V NA I ++ + + M
Sbjct: 76 RRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEM--- 132
Query: 97 YFALIDV--------CDILFPLLRSHGR---VVNVSSSCGHLCHVTSEALKKKLLHEIKS 145
ID+ P + + GR ++ SS G
Sbjct: 133 ----IDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGLK------------------ 170
Query: 146 VEELSALMNEFVELAQDGSHTKGGWPN-SAYAATKLGV---TKLSFLQHALLSQDAIRED 201
+P+ Y A K GV + ++ Q IR
Sbjct: 171 -----------------------AYPHTGHYVAAKHGVVGLMRAFGVELG---QHMIR-- 202
Query: 202 LVVNCVHPGYVNTDM 216
VN VHP +V T M
Sbjct: 203 --VNSVHPTHVKTPM 215
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 61.4 bits (150), Expect = 1e-11
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------KLDILDK 49
VTG+ +GIG I + L G + +T R + E++ ++++L +
Sbjct: 12 VTGSTRGIGRAIAEKLASA--GSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSE 69
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAI 75
SI + + G+D+LVNNA I
Sbjct: 70 ESINKAFEEIYNLVDGIDILVNNAGI 95
Score = 30.5 bits (70), Expect = 0.33
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y+ TK G+ TK +L L+ + VN V PG++ TDM
Sbjct: 157 YSTTKAGLIGFTK------SLAKELAPRNVL----VNAVAPGFIETDM 194
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 61.0 bits (149), Expect = 2e-11
Identities = 41/242 (16%), Positives = 73/242 (30%), Gaps = 75/242 (30%)
Query: 1 VTGA--NKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ----------KLDILD 48
VTGA KG+G +G + + A A +E +++L+ K +
Sbjct: 25 VTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDS 84
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNY---FALIDVCD 105
S + L + A+ G +D + NA + H ++ + F
Sbjct: 85 YESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVG 144
Query: 106 ILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSH 165
F R G +V +S GH+
Sbjct: 145 HHF-KERGTGSLVITASMSGHI-------------------------------------- 165
Query: 166 TKGGWPN--SAYAATKLGVTKLS------FLQHALLSQDAIREDLVVNCVHPGYVNTDMS 217
+P ++Y K G ++ + R VN + PGY++T +S
Sbjct: 166 --ANFPQEQTSYNVAKAGCIHMARSLANEWRDF-------AR----VNSISPGYIDTGLS 212
Query: 218 SG 219
Sbjct: 213 DF 214
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 61.4 bits (150), Expect = 2e-11
Identities = 47/251 (18%), Positives = 79/251 (31%), Gaps = 92/251 (36%)
Query: 1 VTGANKGIGYG------------IVKGLIQQFDGIIYL--TARDASRGQEALEKL----- 41
+TG +G+G + + D + Y TA D + +EK
Sbjct: 15 ITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCI 74
Query: 42 -QKLDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-A 99
K+D+ D+ ++++ E GG+D+ + NA I+ L + + +
Sbjct: 75 SAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS---------TIALLPEVESAQWDE 125
Query: 100 LIDV--------CDILFPLL--RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEEL 149
+I + P + R++GR+V VSS G
Sbjct: 126 VIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLG------------------------ 161
Query: 150 SALMNEFVELAQDGSHTKGGWPNSA-YAATKLGVTKLSFLQHAL---LSQDAIREDLVVN 205
A Y ++K GV L+ L I VN
Sbjct: 162 --HS---------------ANFAQASYVSSKWGVIGLT---KCAAHDLVGYGIT----VN 197
Query: 206 CVHPGYVNTDM 216
V PG + T M
Sbjct: 198 AVAPGNIETPM 208
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 61.1 bits (149), Expect = 2e-11
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ---------KLDILDKN 50
VTGA GIG I + L ++ G +++ AR + L++L+ D+
Sbjct: 27 VTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVP 84
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAI 75
I+AL + +G VDVLVNNA
Sbjct: 85 EIEALVAAVVERYGPVDVLVNNAGR 109
Score = 33.0 bits (76), Expect = 0.060
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y+A+K GV TK AL L++ I VN V PG+V T M
Sbjct: 173 YSASKHGVVGFTK------ALGLELARTGIT----VNAVCPGFVETPM 210
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 61.0 bits (149), Expect = 2e-11
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTGA++GIG I L ++ +I TA + + + L++ D +
Sbjct: 33 VTGASRGIGRAIALELARRGAMVI-GTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATA 91
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
+ AL + E G ++VLVNNA I
Sbjct: 92 VDALVESTLKEFGALNVLVNNAGI 115
Score = 30.2 bits (69), Expect = 0.42
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YAA K GV T+ AL + I VNCV PG+++TDM
Sbjct: 177 YAAAKAGVAGMTR------ALAREIGSRGIT----VNCVAPGFIDTDM 214
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 60.7 bits (148), Expect = 3e-11
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTGA +GIG I K L + +I +R +++++ D+ K
Sbjct: 49 VTGAGRGIGREIAKMLAKSVSHVI-CISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEE 107
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
I + + + EH VD+LVNNA I
Sbjct: 108 ISEVINKILTEHKNVDILVNNAGI 131
Score = 30.2 bits (69), Expect = 0.44
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y+++K GV TK +L L+ I VN + PG++++DM
Sbjct: 193 YSSSKAGVIGFTK------SLAKELASRNIT----VNAIAPGFISSDM 230
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus
anthracis}
Length = 246
Score = 60.2 bits (147), Expect = 3e-11
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTGA++GIG I L +Q ++ A + + E +++++ + D+ +
Sbjct: 9 VTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAED 68
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
+ + G VD+LVNNA +
Sbjct: 69 VTNMVKQTVDVFGQVDILVNNAGV 92
Score = 30.9 bits (71), Expect = 0.27
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y A K GV TK L+ I VN + PG++ TDM
Sbjct: 154 YVAAKAGVIGLTK------TSAKELASRNIT----VNAIAPGFIATDM 191
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 60.2 bits (147), Expect = 3e-11
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTGA++GIG I L ++ + A + + +E+++ + ++ D +
Sbjct: 9 VTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADE 68
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
+KA+ + ++ G +DVLVNNA I
Sbjct: 69 VKAMIKEVVSQFGSLDVLVNNAGI 92
Score = 30.5 bits (70), Expect = 0.36
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y ATK GV TK + L+ I VN V PG++ +DM
Sbjct: 154 YVATKAGVIGLTK------SAARELASRGIT----VNAVAPGFIVSDM 191
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium
loti} PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 60.2 bits (147), Expect = 3e-11
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKL------QKLDILDKNSIK 53
VTGA +GIG I L G + ++ +A + A + DI D S+K
Sbjct: 11 VTGAAQGIGKAIAARLAAD--GATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVK 68
Query: 54 ALHDHLEAEHGGVDVLVNNAAI 75
AL ++A GG+D+LVNNA+I
Sbjct: 69 ALFAEIQALTGGIDILVNNASI 90
Score = 32.1 bits (74), Expect = 0.10
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y A K GV T+ AL L + I N V PG + +D
Sbjct: 153 YVAAKGGVIGFTR------ALATELGKYNIT----ANAVTPGLIESDG 190
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural
genomics, secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 59.8 bits (146), Expect = 4e-11
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ----------KLDILDKN 50
+TGA++GIG I L + + ++ + +E E+ + ++L+
Sbjct: 6 ITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAE 65
Query: 51 SIKALHDHLEAEHGGVDVLVNNAAI 75
+ AL GG+D LVNNA I
Sbjct: 66 AATALVHQAAEVLGGLDTLVNNAGI 90
Score = 30.5 bits (70), Expect = 0.38
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y A+K G+ T+ A+ +Q I VN V PG++ T+M
Sbjct: 152 YVASKAGLIGFTR------AVAKEYAQRGIT----VNAVAPGFIETEM 189
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold,
rossmann fold, oxidoreductase; HET: NAP; 2.30A
{Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 59.8 bits (146), Expect = 4e-11
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTGA++GIG I L + ++ AR A +E ++++ D+ +
Sbjct: 6 VTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEAD 65
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
++A+ G +DV+VNNA I
Sbjct: 66 VEAMMKTAIDAWGTIDVVVNNAGI 89
Score = 31.7 bits (73), Expect = 0.16
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YAA K GV +K + I VN V PG++ +DM
Sbjct: 151 YAAAKAGVIGFSK------TAAREGASRNIN----VNVVCPGFIASDM 188
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 59.4 bits (145), Expect = 5e-11
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTG+++G+G I L I+ + ++ E+ + K D+ +
Sbjct: 10 VTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPED 69
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
++ + G +D+LVNNA I
Sbjct: 70 VENMVKTAMDAFGRIDILVNNAGI 93
Score = 30.9 bits (71), Expect = 0.26
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YAA+K G+ TK ++ + I N V PG + TDM
Sbjct: 155 YAASKAGLIGFTK------SIAKEFAAKGIY----CNAVAPGIIKTDM 192
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 59.5 bits (145), Expect = 6e-11
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTGA++GIG I L + A A E + + K D+ ++
Sbjct: 33 VTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESE 92
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
++AL + G +DVLVNNA I
Sbjct: 93 VEALFAAVIERWGRLDVLVNNAGI 116
Score = 31.4 bits (72), Expect = 0.17
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y+A K GV TK + L+ I VN V PG++ TDM
Sbjct: 178 YSAAKAGVIGLTK------TVAKELASRGIT----VNAVAPGFIATDM 215
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 59.1 bits (144), Expect = 7e-11
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTG GIG I + L + ++ ++ R + LE + + ++ D +S
Sbjct: 18 VTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDS 77
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
K D ++AE G +DVLVNNA I
Sbjct: 78 TKQAFDKVKAEVGEIDVLVNNAGI 101
Score = 32.1 bits (74), Expect = 0.11
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y+ K G+ T +L ++ + VN V PGY+ TDM
Sbjct: 163 YSTAKAGIHGFTM------SLAQEVATKGVT----VNTVSPGYIGTDM 200
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 59.1 bits (144), Expect = 9e-11
Identities = 45/253 (17%), Positives = 72/253 (28%), Gaps = 94/253 (37%)
Query: 1 VTGANKGIGYG------------IVKGLIQQFDGIIYLTARDASRGQEALEKLQKL---- 44
+TGA +G G I + + E ++
Sbjct: 20 ITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKA 79
Query: 45 -----DILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF- 98
D+ D +++ L + G +DV+V NA + + + +
Sbjct: 80 LTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVL---------SWGRVWELTDEQWD 130
Query: 99 ALIDV--------CDILFPLLRSH---GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVE 147
+I V P + G +V VSSS G
Sbjct: 131 TVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAG---------------------- 168
Query: 148 ELSALMNEFVELAQDGSHTKGGWPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLV 203
L P Y+A+K G+T L+ + L L + IR
Sbjct: 169 ----LK---------------ATPGNGHYSASKHGLTALT---NTLAIELGEYGIR---- 202
Query: 204 VNCVHPGYVNTDM 216
VN +HP V T M
Sbjct: 203 VNSIHPYSVETPM 215
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 59.2 bits (144), Expect = 1e-10
Identities = 52/250 (20%), Positives = 84/250 (33%), Gaps = 89/250 (35%)
Query: 1 VTGANKGIGYG------------IVKGLIQQFDGIIYL--TARDASRGQEALEKL----- 41
+TGA +G G + L +Q + Y + + +E+
Sbjct: 51 ITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRII 110
Query: 42 -QKLDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFAL 100
++ D+ D S++A+ D AE G +D+LV+N I+ Q +
Sbjct: 111 ARQADVRDLASLQAVVDEALAEFGHIDILVSNVGIS-NQGEVVSLTDQQWSDI------- 162
Query: 101 IDV--------CDILFPLLRSH---GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEEL 149
+ C + P + G V+ VSS+ G
Sbjct: 163 LQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVG------------------------ 198
Query: 150 SALMNEFVELAQDGSHTKGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLVVNC 206
+G S YAA+K GV L +L + + IR VN
Sbjct: 199 ----------------LRGAPGQSHYAASKHGVQGLM---LSLANEVGRHNIR----VNS 235
Query: 207 VHPGYVNTDM 216
V+PG VNT+M
Sbjct: 236 VNPGAVNTEM 245
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 59.1 bits (143), Expect = 1e-10
Identities = 46/248 (18%), Positives = 77/248 (31%), Gaps = 65/248 (26%)
Query: 1 VTGANKGIGYGIVKGLIQQ----------------FDGIIYLTARD-ASRGQEALEKLQK 43
+TGA++GIG I + G IY A + + G +AL
Sbjct: 50 ITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKAL--PCI 107
Query: 44 LDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDV 103
+D+ D+ I A + + GG+D+LVNNA+ N+ + + M N
Sbjct: 108 VDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLA 167
Query: 104 CDILFPLLR--SHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQ 161
P L+ ++N+S
Sbjct: 168 SKACIPYLKKSKVAHILNISPPL------------------------------------- 190
Query: 162 DGSHTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGY-VNTDMSSGK 220
+ + AY K G++ L A + I VN + P ++T
Sbjct: 191 -NLNPVWFKQHCAYTIAKYGMSMYV-LGMAEEFKGEIA----VNALWPKTAIHTAAMDML 244
Query: 221 GPLTIDQD 228
G I+
Sbjct: 245 GGPGIESQ 252
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 58.4 bits (142), Expect = 2e-10
Identities = 52/252 (20%), Positives = 83/252 (32%), Gaps = 92/252 (36%)
Query: 1 VTGANKGIGYG------------IVKGLIQQFDGIIY--LTARDASRGQEALEKL----- 41
+TGA +G G I + +Q DG+ T D + +E L
Sbjct: 33 ITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRII 92
Query: 42 -QKLDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF-A 99
++D+ D ++++A D + G +D+++ NAA+A G+ L+ M +
Sbjct: 93 ASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALA-------SEGT-RLNRMDPKTWRD 144
Query: 100 LIDV--------CDILFPLL---RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEE 148
+IDV + P + + G +V SS G
Sbjct: 145 MIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR--------------------- 183
Query: 149 LSALMNEFVELAQDGSHTKGGWPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLVV 204
G N Y A+K G+ L + L IR V
Sbjct: 184 --------------------GAENIGNYIASKHGLHGLM---RTMALELGPRNIR----V 216
Query: 205 NCVHPGYVNTDM 216
N V P V T M
Sbjct: 217 NIVCPSSVATPM 228
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 57.2 bits (139), Expect = 5e-10
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
VTG G+G I + L + + L + +D+ D S
Sbjct: 30 VTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFES 89
Query: 52 IKALHDHLEAEHGGVDVLVNNAAI 75
+ + + A+ G VDVL+NNA I
Sbjct: 90 CERCAEKVLADFGKVDVLINNAGI 113
Score = 31.8 bits (73), Expect = 0.14
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YA+ K G+ TK L ++ I VN V PGY+ T M
Sbjct: 175 YASAKAGIHGFTK------TLALETAKRGIT----VNTVSPGYLATAM 212
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 56.7 bits (138), Expect = 5e-10
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ------KLDILDKNSIKA 54
+TGA+ GIG I + L + + ++ + + + L+ ++ +K
Sbjct: 19 ITGASSGIGSAIARLLHKL-GSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSN 77
Query: 55 LHDHLEAEHGGVDVLVNNAAI 75
L + +D+LV NA I
Sbjct: 78 LIS----KTSNLDILVCNAGI 94
Score = 30.2 bits (69), Expect = 0.50
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
Y A+K G+ TK +L ++ I VN V PG++ +DM
Sbjct: 156 YCASKAGLIGMTK------SLSYEVATRGIT----VNAVAPGFIKSDM 193
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 56.9 bits (138), Expect = 6e-10
Identities = 42/254 (16%), Positives = 65/254 (25%), Gaps = 86/254 (33%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ----------KLDILDKN 50
VTGA K IG I L Q ++ A ++L + D+ + N
Sbjct: 28 VTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSN 87
Query: 51 ----SIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYF---ALIDV 103
S + + + G DVLVNNA+ F + +T LI
Sbjct: 88 VLPASCEEIINSCFRAFGRCDVLVNNASA-FYPTPLVQGDHEDNSNGKTVETQVAELIGT 146
Query: 104 ----------------CDILFPLLRSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVE 147
S+ +VN+
Sbjct: 147 NAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCD------------------------- 181
Query: 148 ELSALMNEFVELAQDGSHTKGGWPN-SAYAATKLGVTKLSFLQHAL---LSQDAIREDLV 203
+ S Y K + L+ + L+ IR
Sbjct: 182 ----------------AMVDQPCMAFSLYNMGKHALVGLT---QSAALELAPYGIR---- 218
Query: 204 VNCVHPGYVNTDMS 217
VN V PG ++
Sbjct: 219 VNGVAPGVSLLPVA 232
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 56.4 bits (137), Expect = 7e-10
Identities = 53/253 (20%), Positives = 78/253 (30%), Gaps = 95/253 (37%)
Query: 1 VTGANKGIG---------YG---IVKGLIQQFDGIIYL--TARDASRGQEALEKL----- 41
+TGA +G G G I L Q + Y T + + + +E +
Sbjct: 18 ITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIV 77
Query: 42 -QKLDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRT---NY 97
++ D+ D+ S+ A E G +D++V NA IA M +
Sbjct: 78 ARQADVRDRESLSAALQAGLDELGRLDIVVANAGIA---------------PMSAGDDGW 122
Query: 98 FALIDV--------CDILFPLL---RSHGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSV 146
+IDV + P L + G +V +SSS G + V
Sbjct: 123 HDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAG-----------------LAGV 165
Query: 147 EELSALMNEFVELAQDGSHTKGGWPNSAYAATKLGVTKLSFLQHAL---LSQDAIREDLV 203
Y A K GV L L+ IR
Sbjct: 166 GSADPGS-------------------VGYVAAKHGVVGLM---RVYANLLAGQMIR---- 199
Query: 204 VNCVHPGYVNTDM 216
VN +HP V T M
Sbjct: 200 VNSIHPSGVETPM 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.6 bits (138), Expect = 8e-10
Identities = 45/227 (19%), Positives = 70/227 (30%), Gaps = 56/227 (24%)
Query: 14 KGLIQQFD-GIIYLTARDASRGQEALEKLQKL-----------------DILDKNSIKAL 55
+ + D I +L ++ + + LE LQKL L +SI+A
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 56 HDHLEAEHGGVDVL-----VNNAAI--AFKVNSSEPFGSQALHTMRTNYFALIDVCDILF 108
L + L V NA AF + L T R V D L
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LSCKILLTTRF-----KQVTDFLS 282
Query: 109 PLLRSHGRVVNVSSSCGHLCHVTSEAL--------KKKLLHEIKSVEELSALMNEFVELA 160
+H + + S + L ++L + L E+ + ++ E
Sbjct: 283 AATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSIIAESI 337
Query: 161 QDGSHTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIR---EDLVV 204
+DG T W + KL S L L R + L V
Sbjct: 338 RDGLATWDNWKH--VNCDKLTTIIESSLNV--LEPAEYRKMFDRLSV 380
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 56.4 bits (137), Expect = 8e-10
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 9/82 (10%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQ---------KLDILDKNS 51
+T KG+G + + L+ + + D + + E + + D+ K
Sbjct: 12 ITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKED 71
Query: 52 IKALHDHLEAEHGGVDVLVNNA 73
+ + + + G +D L+NNA
Sbjct: 72 LHKIVEEAMSHFGKIDFLINNA 93
Score = 32.1 bits (74), Expect = 0.11
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
+AA K+G+ TK + ++ I N V PG + +M
Sbjct: 161 FAAAKVGLVSLTK------TVAYEEAEYGIT----ANMVCPGDIIGEM 198
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 55.4 bits (134), Expect = 2e-09
Identities = 41/277 (14%), Positives = 65/277 (23%), Gaps = 107/277 (38%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARD----------ASRGQEAL-------- 38
VTGA K +G I +GL +G + Y + A R A+
Sbjct: 14 VTGAAKRLGRSIAEGLHA--EGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 71
Query: 39 -------EKLQKLDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAF-------------- 77
+ L G DVLVNNA+ +
Sbjct: 72 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 131
Query: 78 KVNSSEPFGSQALHTMRTNYFALIDVC--------DILFPLLRSHGRVVNVSSSCGHLCH 129
V E + +N A + ++ ++N+
Sbjct: 132 CVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD------- 184
Query: 130 VTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNSA-YAATKLGVTKLSFL 188
+ T Y K + L+
Sbjct: 185 ----------------------------------AMTNQPLLGYTIYTMAKGALEGLT-- 208
Query: 189 QHAL---LSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
+ L+ IR VN V PG + + P
Sbjct: 209 -RSAALELAPLQIR----VNGVGPGL--SVLVDDMPP 238
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 55.8 bits (135), Expect = 2e-09
Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 48/150 (32%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ--------KLDILDKNS 51
VTGA +GIG I + + G + D + E L+++ LD+ ++
Sbjct: 218 VTGAARGIGATIAEVFARD--GATVVAIDVDGA--AEDLKRVADKVGGTALTLDVTADDA 273
Query: 52 IKALHDHLEAEHGG-VDVLVNNAAIAFKVNSSEPFGSQALHT-----MR----------- 94
+ + H+ HGG VD+LVNNA I T
Sbjct: 274 VDKITAHVTEHHGGKVDILVNNAGI----------------TRDKLLANMDEKRWDAVIA 317
Query: 95 TNYFALIDVCDILFP--LLRSHGRVVNVSS 122
N A + + L + GRV+ +SS
Sbjct: 318 VNLLAPQRLTEGLVGNGTIGEGGRVIGLSS 347
Score = 30.7 bits (70), Expect = 0.36
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 175 YAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDM 216
YA TK G+ L+ +L+ I +N V PG++ T M
Sbjct: 360 YATTKAGMIGLAEALAPVLADKGIT----INAVAPGFIETKM 397
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 54.8 bits (132), Expect = 3e-09
Identities = 41/277 (14%), Positives = 65/277 (23%), Gaps = 107/277 (38%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARD----------ASRGQEAL-------- 38
VTGA K +G I +GL + G + Y + A R A+
Sbjct: 51 VTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 108
Query: 39 -------EKLQKLDILDKNSIKALHDHLEAEHGGVDVLVNNAAIAF-------------- 77
+ L G DVLVNNA+ +
Sbjct: 109 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 168
Query: 78 KVNSSEPFGSQALHTMRTNYFALIDVC--------DILFPLLRSHGRVVNVSSSCGHLCH 129
V E + +N A + ++ ++N+
Sbjct: 169 CVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVD------- 221
Query: 130 VTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNSA-YAATKLGVTKLSFL 188
+ T Y K + L+
Sbjct: 222 ----------------------------------AMTNQPLLGYTIYTMAKGALEGLT-- 245
Query: 189 QHAL---LSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
+ L+ IR VN V PG + + P
Sbjct: 246 -RSAALELAPLQIR----VNGVGPGL--SVLVDDMPP 275
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 54.6 bits (132), Expect = 4e-09
Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 58/235 (24%)
Query: 1 VTGANKGIGYGIVKGLIQQ------FDGIIYLTARDASRGQEALEKL------QKLDILD 48
V+G G+G V+ L D A +G+ ++L ++
Sbjct: 35 VSGGAGGLGEATVRRLHADGLGVVIAD-------LAAEKGKALADELGNRAEFVSTNVTS 87
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILF 108
++S+ A + +V + ++ + F
Sbjct: 88 EDSVLAAIEAANQLGRLRYAVVAHGGFG----VAQRIVQRDGSPADMGGFT--------- 134
Query: 109 PLLRSHGRVVNVSSSCGHLC---HVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSH 165
+ +++ +L +V E + E AL+ +G
Sbjct: 135 -------KTIDL-----YLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEG-- 180
Query: 166 TKGGWPNSAYAATKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDMSSG 219
+ G +AYAA K GV L+ + A LS IR VN + PG + T +
Sbjct: 181 -QIG--QTAYAAAKAGVIGLT-IAAARDLSSAGIR----VNTIAPGTMKTPIMES 227
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 52.9 bits (128), Expect = 1e-08
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 20/93 (21%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ----------------K 43
VTGA GIG + L + G + D + QE + L +
Sbjct: 12 VTGAGSGIGRAVSVRLAGE--GATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQ 69
Query: 44 LDILDKNSIKALHDHLEAEHGG-VDVLVNNAAI 75
D+ + + + L + ++A V+V+ A I
Sbjct: 70 ADVSEARAARCLLEQVQACFSRPPSVVVSCAGI 102
Score = 32.1 bits (74), Expect = 0.095
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 16/48 (33%)
Query: 175 YAATKLGV---TKLSFLQHAL---LSQDAIREDLVVNCVHPGYVNTDM 216
YAA+K GV T+ L + IR N V PG++ T M
Sbjct: 165 YAASKAGVIGLTQ------TAARELGRHGIR----CNSVLPGFIATPM 202
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 50.7 bits (122), Expect = 7e-08
Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 61/237 (25%)
Query: 1 VTGANKGIGYGIVKGLIQQ------FDGIIYLTARDASRGQEALEKL------QKLDILD 48
+TG G+G + L+ Q D S G+ +KL D+
Sbjct: 17 ITGGASGLGLATAERLVGQGASAVLLD-------LPNSGGEAQAKKLGNNCVFAPADVTS 69
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNA--AIAFKVNSSEPFGSQALHTMRTNYFALIDVCDI 106
+ ++ + + G VDV VN A A+A K + + + L +
Sbjct: 70 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQ------------ 117
Query: 107 LFPLLRSHGRVVNVSSSCGHLC---HVTSEALKKKLLHEIKSVEELSALMNEFVELAQDG 163
RV++V +L +V + +E + ++N A +G
Sbjct: 118 ---------RVLDV-----NLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEG 163
Query: 164 SHTKGGWPNSAYAATKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDMSSG 219
G +AY+A+K G+ ++ L A L+ IR V + PG T + +
Sbjct: 164 Q--VG---QAAYSASKGGIVGMT-LPIARDLAPIGIR----VMTIAPGLFGTPLLTS 210
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 49.1 bits (118), Expect = 2e-07
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 19/88 (21%)
Query: 1 VTGANKGIGYGIVKGLIQQ------FDGIIYLTARDASRGQEALEKL------QKLDILD 48
VTGA+ G+G + + L Q+ D G+E +L + D+ +
Sbjct: 12 VTGASSGLGAAVTRMLAQEGATVLGLD-------LKPPAGEEPAAELGAAVRFRNADVTN 64
Query: 49 KNSIKALHDHLEAEHGGVDVLVNNAAIA 76
+ A + E G V LVN A A
Sbjct: 65 EADATAALAFAKQEFGHVHGLVNCAGTA 92
Score = 33.0 bits (76), Expect = 0.060
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 173 SAYAATKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDMSSG 219
+AYAA+K GV L+ L A L++ IR V + PG +T M +G
Sbjct: 161 AAYAASKGGVAALT-LPAARELARFGIR----VVTIAPGIFDTPMMAG 203
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 43.5 bits (103), Expect = 2e-05
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 17/125 (13%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHLE 60
VTG++ IG +V L +++ G + A D + K LD+ +++ I
Sbjct: 4 VTGSSGQIGTELVPYLAEKY-GKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRA----- 57
Query: 61 AEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLRSHG--RVV 118
E +D + + A I +P + N ++ + + H +VV
Sbjct: 58 VEKYSIDAIFHLAGILSAKGEKDP-----ALAYKVNMNGTYNILE----AAKQHRVEKVV 108
Query: 119 NVSSS 123
S+
Sbjct: 109 IPSTI 113
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 40.7 bits (96), Expect = 2e-04
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKLDILDKNSIKALH 56
VTG G+G K L+ G ++ + D + D+ D+ ++ +
Sbjct: 14 VTGGASGLGLATTKRLLDA--GAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVASAL 71
Query: 57 DHLEAEHGGVDVLVNNAAIA 76
D E G + ++VN A
Sbjct: 72 DLAET-MGTLRIVVNCAGTG 90
Score = 31.8 bits (73), Expect = 0.15
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 173 SAYAATKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDMSSG 219
+AY+A+K GV ++ L A L+ IR V + PG +T + +
Sbjct: 161 AAYSASKGGVVGMT-LPIARDLASHRIR----VMTIAPGLFDTPLLAS 203
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 6e-04
Identities = 44/268 (16%), Positives = 83/268 (30%), Gaps = 91/268 (33%)
Query: 6 KGIGYGIVKGLIQQFDGIIYLTARDA-SRGQEALEKLQKLDILD--KNSIKALHDHLEAE 62
+G+G L + A+D +R + ILD N+ L H E
Sbjct: 1629 QGMG----MDLYKTSK-----AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 63 HGGVDVLVNNAAIAF------KVNSSEPFGSQALHTMRTNYFALIDVCD--------IL- 107
G + N +A+ F K+ + + F H+ + + + +
Sbjct: 1680 -KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL 1738
Query: 108 -----FPLLRSHGRVVNVSSSCGH-------LCHVTSEALKKKLLHEIKSVEELSAL--- 152
F L+S G + ++ GH L + ++ + S+E L +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL-ADVM---------SIESLVEVVFY 1788
Query: 153 ----MNEFVELAQDGSHTKGGWPNSAYAATKLGVTKLSFLQHALLSQDAIRE-------- 200
M V + G S Y + +++ A SQ+A++
Sbjct: 1789 RGMTMQVAVPRDELG--------RSNYGMIAINPGRVA----ASFSQEALQYVVERVGKR 1836
Query: 201 -DLVV-----NCVHPG--YVNTDMSSGK 220
+V N YV ++G
Sbjct: 1837 TGWLVEIVNYNV--ENQQYV----AAGD 1858
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 242
Score = 38.7 bits (91), Expect = 6e-04
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQKLDILDKNSIKALH 56
VTG G+G L + G ++ L G++ + + D+ + ++
Sbjct: 7 VTGGASGLGRAAALALKAR--GYRVVVLDLRRE----GEDLI--YVEGDVTREEDVRRAV 58
Query: 57 DHLEAEHGGVDVLVNNAAIA 76
+ E + +V+ A +
Sbjct: 59 ARAQ-EEAPLFAVVSAAGVG 77
Score = 31.8 bits (73), Expect = 0.14
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 173 SAYAATKLGVTKLSFLQHAL-LSQDAIREDLVVNCVHPGYVNTDMSSG 219
+AYAA+K GV L+ L A L+ IR V V PG +T + G
Sbjct: 146 AAYAASKGGVVALT-LPAARELAGWGIR----VVTVAPGLFDTPLLQG 188
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 37.3 bits (87), Expect = 0.002
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 20/128 (15%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEAL---EKLQKLDILDKNSIKALHD 57
+ GA IG + + L + + G + A D + + + ++ LD N I+ L
Sbjct: 7 IIGACGQIGTELTQKLRKLY-GTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHL-- 63
Query: 58 HLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLRSHG-- 115
E + + AA+ P N +L V + L ++
Sbjct: 64 ---VEVHKITDIYLMAALLSATAEKNP-----AFAWDLNMNSLFHVLN----LAKAKKIK 111
Query: 116 RVVNVSSS 123
++ SS
Sbjct: 112 KIFWPSSI 119
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 36.8 bits (85), Expect = 0.003
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKAL-HDHL 59
V +G L + + L R + Q A + + K ++ + +
Sbjct: 124 VLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASR 182
Query: 60 EAEHGGVDVLVNNAAIAFKVNSSE 83
G + AI ++
Sbjct: 183 AEAVKGAHFVFTAGAIGLELLPQA 206
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 35.0 bits (81), Expect = 0.015
Identities = 29/165 (17%), Positives = 55/165 (33%), Gaps = 55/165 (33%)
Query: 64 GGVDVLVNNAAI----AFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLR--SHGRV 117
G +DV+VNNA I +F S E + R + V + ++ ++GR+
Sbjct: 91 GRIDVVVNNAGILRDRSFSRISDEDWDI----IQRVHLRGSFQVTRAAWDHMKKQNYGRI 146
Query: 118 VNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNSAYAA 177
+ +S+ G G + + Y+A
Sbjct: 147 IMTASASGIY----------------------------------------GNFGQANYSA 166
Query: 178 TKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
KLG+ L+ L + + ++ N + P + M+ P
Sbjct: 167 AKLGLLGLAN----TLVIEGRKNNIHCNTIAPN-AGSRMTETVMP 206
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 35.2 bits (81), Expect = 0.016
Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 29/127 (22%)
Query: 1 VTGANKG-IGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKL--------------- 44
+TGA KG IG +++GL+Q ++ T+R + + + Q +
Sbjct: 481 ITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSK---QVTDYYQSIYAKYGAKGSTLIVVP 537
Query: 45 -DILDKNSIKALHDHLEAEHGGV------DVLVNNAAIAFKVNSSEPFGSQALHTMR--- 94
+ K ++AL + + D ++ AAI + E S++ R
Sbjct: 538 FNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIML 597
Query: 95 TNYFALI 101
TN ++
Sbjct: 598 TNILRMM 604
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 35.1 bits (81), Expect = 0.016
Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 55/168 (32%)
Query: 61 AEHGGVDVLVNNAAI----AFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLR--SH 114
G V V++NNA I + K + + + + + V +P + +
Sbjct: 87 KNFGTVHVIINNAGILRDASMKKMTEKDYKL----VIDVHLNGAFAVTKAAWPYFQKQKY 142
Query: 115 GRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPNSA 174
GR+VN SS G G + +
Sbjct: 143 GRIVNTSSPAGLY----------------------------------------GNFGQAN 162
Query: 175 YAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSGKGP 222
YA+ K + + L+++ + ++ N + P + M+ P
Sbjct: 163 YASAKSALLGFAE----TLAKEGAKYNIKANAIAPL-ARSRMTESIMP 205
Score = 33.9 bits (78), Expect = 0.039
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 64 GGVDVLVNNAAI----AFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLR--SHGRV 117
G +D+LVNNA I +F S + + S + + ++ + +P GR+
Sbjct: 394 GTIDILVNNAGILRDRSFAKMSKQEWDS----VQQVHLIGTFNLSRLAWPYFVEKQFGRI 449
Query: 118 VNVSSSCG 125
+N++S+ G
Sbjct: 450 INITSTSG 457
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.029
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 48 DKNSIKALHDHLEAEHGGVDVLVNNAAIAFKVNSS-E 83
+K ++K L L+ + +++A A + ++ E
Sbjct: 18 EKQALKKLQASLK-------LYADDSAPALAIKATME 47
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 34.0 bits (78), Expect = 0.031
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 64 GGVDVLVNNAAI----AFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLR--SHGRV 117
G VD+LVNNA I + S + + + FP ++ ++GR+
Sbjct: 101 GRVDILVNNAGILRDRSLVKTSEQDWNL----VNDVHLKGSFKCTQAAFPYMKKQNYGRI 156
Query: 118 VNVSSSCGHL 127
+ SS+ G
Sbjct: 157 IMTSSNSGIY 166
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 33.7 bits (78), Expect = 0.032
Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 31/137 (22%)
Query: 1 VTG-ANK-GIGYGIVKGLIQQFDG----IIYLTARDASRGQEALEKLQ-----KLDILDK 49
+TG + I YGI K + ++ G Y+ + R ++ + D++
Sbjct: 31 ITGLLSNKSIAYGIAKAMHRE--GAELAFTYVG-QFKDRVEKLCAEFNPAAVLPCDVISD 87
Query: 50 NSIKALHDHLEAEHGGVDVLVNNAAIAF-----------KVNSSEPFGSQALHTMRTNYF 98
IK L L G+D +V+ +IAF + E F + +
Sbjct: 88 QEIKDLFVELGKVWDGLDAIVH--SIAFAPRDQLEGNFIDCVTREGF----SIAHDISAY 141
Query: 99 ALIDVCDILFPLLRSHG 115
+ + ++++
Sbjct: 142 SFAALAKEGRSMMKNRN 158
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 33.0 bits (76), Expect = 0.056
Identities = 33/220 (15%), Positives = 61/220 (27%), Gaps = 61/220 (27%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI-IYLTARDASRGQEALEKLQ----KLDILDKNSI-KA 54
V GA +G+ + + G + L R +S+ + L L+ ++LD + +A
Sbjct: 18 VLGATGLLGHHAARAIRAA--GHDLVLIHRPSSQ-IQRLAYLEPECRVAEMLDHAGLERA 74
Query: 55 LHDHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLRSH 114
L G+D ++ +A + Q +
Sbjct: 75 LR--------GLDGVIFSAGY-YPSRPRRW---QEEV--ASALGQTNPFYA----ACLQA 116
Query: 115 G--RVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWPN 172
R++ V S + + HE +
Sbjct: 117 RVPRILYVGS-----AYAMPRHPQGLPGHE-------------------GLFYDSLPSGK 152
Query: 173 SAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYV 212
S+Y K + + A + R L V PG V
Sbjct: 153 SSYVLCKWALDEQ-----AR---EQARNGLPVVIGIPGMV 184
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 31.5 bits (71), Expect = 0.16
Identities = 13/132 (9%), Positives = 31/132 (23%), Gaps = 12/132 (9%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALE------KLQKLDILDKNSI-K 53
+ GA I + L+ D I L R + + + + +
Sbjct: 10 ILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQ 69
Query: 54 ALHDH---LEAEHGGVDVLVN--NAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILF 108
A+ + + + A + L ++
Sbjct: 70 AVTNAEVVFVGAMESGSDMASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPI 129
Query: 109 PLLRSHGRVVNV 120
++ + NV
Sbjct: 130 SYVQGERQARNV 141
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 31.2 bits (71), Expect = 0.22
Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 28/127 (22%)
Query: 1 VTGANKGIGYGIVKGLIQQFDG-IIYLTARDASRGQEALEKLQ--KLDILDKNSIKALHD 57
+ GA+ +G ++ + + G + R + + E L+ K D+ + + +
Sbjct: 9 LIGASGFVGSALLNEALNR--GFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCK 66
Query: 58 HLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLRSHG-- 115
G D +++ A N+ + + + +ID + G
Sbjct: 67 -------GADAVIS--AFNPGWNNPDIYDETIKVYL-----TIIDGV-------KKAGVN 105
Query: 116 RVVNVSS 122
R + V
Sbjct: 106 RFLMVGG 112
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 30.2 bits (68), Expect = 0.51
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKALHDHLE 60
+ GA I ++ L + L AR ++ + ++ + D + AL ++
Sbjct: 28 ILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQ 87
Query: 61 AEHGGVDVLVNNAA 74
G D++ N
Sbjct: 88 ----GQDIVYANLT 97
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 29.6 bits (67), Expect = 0.69
Identities = 35/168 (20%), Positives = 50/168 (29%), Gaps = 61/168 (36%)
Query: 64 GGVDVLVNNAAI----AFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLRS------ 113
GG+DVLVNNA I S E F + + + R
Sbjct: 113 GGLDVLVNNAGIVRDRMIANTSEEEFDA----VIAVHLKGHFATMRHAAAYWRGLSKAGK 168
Query: 114 --HGRVVNVSSSCGHLCHVTSEALKKKLLHEIKSVEELSALMNEFVELAQDGSHTKGGWP 171
GR++N SS G GS G
Sbjct: 169 AVDGRIINTSSGAGLQ-----------------------------------GSV---GQG 190
Query: 172 NSAYAATKLGVTKLSFLQHALLSQDAIREDLVVNCVHPGYVNTDMSSG 219
N Y+A K G+ L+ + A + + + VN + P T M+
Sbjct: 191 N--YSAAKAGIATLTLVGAAEMGRYGVT----VNAIAPS-ARTRMTET 231
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 28.3 bits (63), Expect = 2.0
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 17/78 (21%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKL-------DILDKNSI- 52
+ G IG +VKG ++ T R S L++ Q L ++ + +
Sbjct: 16 IFGGTGYIGNHMVKGSLKLGHPTYVFT-RPNSSKTTLLDEFQSLGAIIVKGELDEHEKLV 74
Query: 53 KALHDHLEAEHGGVDVLV 70
+ + VDV++
Sbjct: 75 ELMK--------KVDVVI 84
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 27.3 bits (60), Expect = 4.0
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 18/81 (22%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKL----------DILDKN 50
+ GA IG + + L R R + + L I ++
Sbjct: 15 IAGATGFIGQFVATASLDAHRPTYILA-RPGPRSPSKAKIFKALEDKGAIIVYGLINEQE 73
Query: 51 SI-KALHDHLEAEHGGVDVLV 70
++ K L +H +D++V
Sbjct: 74 AMEKILKEH------EIDIVV 88
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix,
two-stranded antiparallel coiled CO structural
genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP:
a.4.5.49 PDB: 1xsx_A
Length = 95
Score = 26.3 bits (58), Expect = 4.1
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 14 KGLIQQFDGIIYLTARDASRGQEALEKLQKL 44
+I+Q LT +G+E LE ++K
Sbjct: 47 LEIIRQEGKQYMLTK----KGEELLEDIRKF 73
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 27.1 bits (60), Expect = 5.1
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 10/73 (13%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI-IYLTARDASRGQEALEKLQ--KLDILDKNSIKALHD 57
VTGA+ G + K L + D R A ++ + DI D +SI
Sbjct: 9 VTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQ 68
Query: 58 HLEAEHGGVDVLV 70
G+D LV
Sbjct: 69 -------GIDALV 74
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 26.5 bits (59), Expect = 6.4
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 30/130 (23%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGI-IYLTARDASRGQEALE---KLQKLDILDKNSIKALH 56
+ GA G + +Q G + + RD+SR + D+L +
Sbjct: 8 IFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTV 65
Query: 57 DHLEAEHGGVDVLVNNAAIAFKVNSSEPFGSQALHTMRTNYFALIDVCDILFPLLRSHG- 115
G D ++ M ++ ++HG
Sbjct: 66 A-------GQDAVIVLLGT--------RNDLSPTTVMSEGARNIVAAM-------KAHGV 103
Query: 116 -RVVNVSSSC 124
+VV +S+
Sbjct: 104 DKVVACTSAF 113
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 26.4 bits (58), Expect = 8.4
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEKLQKLDILDKNSIKAL----- 55
+ G IG IV I+ + L R K + +D + L
Sbjct: 7 ILGPTGAIGRHIVWASIKAGNPTYALV-RKTITAANPETKEELIDNYQSLGVILLEGDIN 65
Query: 56 -HDHLEAEHGGVDVLV 70
H+ L VD+++
Sbjct: 66 DHETLVKAIKQVDIVI 81
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 26.1 bits (58), Expect = 9.8
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 1 VTGANKGIGYGIVKGLIQQFDGIIYLTARDASRGQEALEK 40
+TGA +G I I ++ R+ + +
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRG 44
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 26.4 bits (59), Expect = 10.0
Identities = 7/19 (36%), Positives = 15/19 (78%), Gaps = 2/19 (10%)
Query: 33 RGQEALEKLQKLD--ILDK 49
+ EALE+++K++ ++DK
Sbjct: 409 KNAEALERMEKVNTLVVDK 427
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,496,094
Number of extensions: 204537
Number of successful extensions: 1452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1046
Number of HSP's successfully gapped: 394
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)