Query psy8
Match_columns 50
No_of_seqs 145 out of 745
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 00:13:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 99.6 4.1E-16 9E-21 109.1 2.2 49 1-49 581-631 (707)
2 PF06714 Gp5_OB: Gp5 N-termina 67.2 3 6.5E-05 25.5 1.0 37 8-44 13-57 (144)
3 PHA02926 zinc finger-like prot 65.5 3.2 6.9E-05 27.3 0.9 31 3-42 73-103 (242)
4 PF04831 Popeye: Popeye protei 58.5 11 0.00024 23.3 2.3 16 2-17 37-52 (153)
5 PF10438 Cyc-maltodext_C: Cycl 58.3 4.7 0.0001 22.0 0.6 13 30-42 6-18 (78)
6 PHA02596 5 baseplate hub subun 56.5 10 0.00022 27.8 2.2 38 8-45 44-89 (576)
7 PF02566 OsmC: OsmC-like prote 54.0 12 0.00026 19.7 1.8 22 2-23 25-46 (100)
8 PF10764 Gin: Inhibitor of sig 48.6 19 0.0004 17.8 1.9 14 29-42 7-20 (46)
9 cd01763 Sumo Small ubiquitin-r 45.0 14 0.0003 19.8 1.2 20 2-21 39-58 (87)
10 PF08487 VIT: Vault protein in 41.8 54 0.0012 18.4 3.3 36 8-43 1-55 (118)
11 PF11623 DUF3252: Protein of u 40.8 12 0.00026 19.4 0.5 11 39-49 33-43 (53)
12 TIGR03562 osmo_induc_OsmC pero 35.5 43 0.00094 19.6 2.3 23 2-24 61-83 (135)
13 COG5654 Uncharacterized conser 33.4 20 0.00043 22.4 0.7 16 30-50 26-41 (163)
14 PF11976 Rad60-SLD: Ubiquitin- 33.1 20 0.00043 18.1 0.5 19 2-20 28-47 (72)
15 KOG2964|consensus 31.7 25 0.00055 24.4 1.0 22 1-23 178-199 (361)
16 PF00035 dsrm: Double-stranded 31.5 69 0.0015 15.4 3.8 13 1-13 5-17 (67)
17 cd06601 GH31_lyase_GLase GLase 30.7 33 0.00071 23.0 1.4 19 5-23 33-51 (332)
18 cd06595 GH31_xylosidase_XylS-l 29.6 38 0.00083 21.9 1.5 16 6-21 35-50 (292)
19 PF14026 DUF4242: Protein of u 29.3 43 0.00094 17.9 1.5 14 3-16 62-75 (77)
20 TIGR00296 uncharacterized prot 29.3 58 0.0013 20.5 2.3 34 12-45 97-147 (200)
21 TIGR03563 perox_SACOL1771 pero 28.6 87 0.0019 17.8 2.8 20 3-22 61-80 (138)
22 KOG1769|consensus 28.5 51 0.0011 19.0 1.8 21 3-23 49-69 (99)
23 COG1660 Predicted P-loop-conta 28.2 50 0.0011 22.4 1.9 22 3-24 169-191 (286)
24 cd06593 GH31_xylosidase_YicI Y 27.8 49 0.0011 21.3 1.8 18 5-22 33-50 (308)
25 TIGR00313 cobQ cobyric acid sy 27.6 31 0.00066 24.1 0.9 9 34-42 417-425 (475)
26 cd06591 GH31_xylosidase_XylS X 27.3 44 0.00095 21.9 1.5 15 6-20 34-48 (319)
27 COG1564 THI80 Thiamine pyropho 27.3 30 0.00065 22.2 0.7 14 36-49 159-172 (212)
28 PRK10738 hypothetical protein; 27.2 55 0.0012 19.0 1.8 22 2-23 53-74 (134)
29 PF08577 PI31_Prot_C: PI31 pro 26.5 23 0.0005 18.9 0.1 12 38-49 59-70 (73)
30 cd06602 GH31_MGAM_SI_GAA This 25.9 39 0.00085 22.4 1.1 18 6-23 34-51 (339)
31 cd06598 GH31_transferase_CtsZ 25.9 52 0.0011 21.6 1.7 16 6-21 34-49 (317)
32 cd06589 GH31 The enzymes of gl 25.8 45 0.00097 21.2 1.3 19 5-23 33-51 (265)
33 cd06603 GH31_GANC_GANAB_alpha 25.3 47 0.001 21.9 1.4 17 5-21 33-49 (339)
34 cd06594 GH31_glucosidase_YihQ 24.5 53 0.0011 21.6 1.5 14 5-18 32-45 (317)
35 cd06599 GH31_glycosidase_Aec37 24.3 57 0.0012 21.4 1.6 14 6-19 39-52 (317)
36 cd06600 GH31_MGAM-like This fa 24.1 49 0.0011 21.7 1.3 18 6-23 34-51 (317)
37 PF11020 DUF2610: Domain of un 23.9 11 0.00023 21.2 -1.6 16 1-16 57-72 (82)
38 COG4972 PilM Tfp pilus assembl 23.3 1E+02 0.0022 21.5 2.7 23 2-24 109-131 (354)
39 cd06604 GH31_glucosidase_II_Ma 23.1 51 0.0011 21.7 1.3 16 5-20 33-48 (339)
40 PF02760 HIN: HIN-200/IF120x d 23.1 61 0.0013 20.4 1.5 12 31-42 110-121 (170)
41 PF05692 Myco_haema: Mycoplasm 23.0 99 0.0022 22.2 2.7 18 29-46 335-353 (439)
42 PRK06278 cobyrinic acid a,c-di 22.6 33 0.00071 24.3 0.3 11 33-43 178-188 (476)
43 cd06597 GH31_transferase_CtsY 22.4 66 0.0014 21.4 1.7 13 6-18 34-46 (340)
44 PF01745 IPT: Isopentenyl tran 22.2 27 0.00058 23.0 -0.2 14 3-16 180-193 (233)
45 COG4352 RPL13 Ribosomal protei 21.8 45 0.00097 19.7 0.7 12 3-14 74-85 (113)
46 TIGR03561 organ_hyd_perox pero 21.8 69 0.0015 18.2 1.5 20 2-21 59-79 (134)
47 PHA00911 21 prohead core scaff 21.7 1E+02 0.0022 20.1 2.4 14 31-44 28-41 (212)
48 PF08284 RVP_2: Retroviral asp 21.7 73 0.0016 18.5 1.6 23 2-24 48-70 (135)
49 cd01420 MoaC_PE MoaC family, p 20.6 2.1E+02 0.0046 17.3 3.8 17 8-24 63-79 (140)
50 PF01212 Beta_elim_lyase: Beta 20.5 50 0.0011 21.6 0.8 8 40-47 161-168 (290)
51 PF03969 AFG1_ATPase: AFG1-lik 20.2 78 0.0017 21.5 1.7 11 29-39 59-69 (362)
52 PF01229 Glyco_hydro_39: Glyco 20.1 81 0.0018 21.9 1.8 21 3-23 217-237 (486)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.59 E-value=4.1e-16 Score=109.07 Aligned_cols=49 Identities=57% Similarity=1.007 Sum_probs=28.0
Q ss_pred ChhhhhhcCCCceEEEeEEEEEecc--CCCCCCCCeEEEeeeeEeeeccCC
Q psy8 1 MQNYARKMTIPIDHLTFDFVVLQIN--KSEAPPEDGVYCYGLFLDGARWDR 49 (50)
Q Consensus 1 lQ~~ARk~~ipiD~l~~~~~v~~~~--~~~~~p~~GvyI~GLfLeGA~Wd~ 49 (50)
+|++||++++|||+|.|.++|++.+ +...+|++|+||+|||||||+||.
T Consensus 581 rQ~~AR~~~~~ld~L~l~~~v~~~~~~~~~~~~~~g~~I~GL~leGA~wd~ 631 (707)
T PF03028_consen 581 RQEYARKNKIPLDQLTLSFEVTSSEDENIRSPPEDGVYIHGLFLEGARWDG 631 (707)
T ss_dssp HHHHHHHTT-----EE--EE--------------EEEEE-SEEEESSEEET
T ss_pred HHHHHHhcCcCchhcceeEEEEeccccccccccccceEEEeEEecccEecc
Confidence 5999999999999999999999863 344578999999999999999996
No 2
>PF06714 Gp5_OB: Gp5 N-terminal OB domain; InterPro: IPR009590 This domain is found at the N terminus of the Gp5 baseplate protein of Bacteriophage T4. This domain binds to the Gp27 protein []. This domain has the common OB fold [].; PDB: 1K28_A 1WTH_A 2Z6B_A.
Probab=67.15 E-value=3 Score=25.53 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=18.8
Q ss_pred cCCCceEEEeEEEEEecc--------CCCCCCCCeEEEeeeeEee
Q psy8 8 MTIPIDHLTFDFVVLQIN--------KSEAPPEDGVYCYGLFLDG 44 (50)
Q Consensus 8 ~~ipiD~l~~~~~v~~~~--------~~~~~p~~GvyI~GLfLeG 44 (50)
..+|.++|-|-.-++... ........|++|.|+||+.
T Consensus 13 ~giPTE~LPW~~v~~p~tsa~~sG~G~S~tgl~~Gs~V~GfflD~ 57 (144)
T PF06714_consen 13 EGIPTEDLPWASVMQPTTSASISGIGGSPTGLVEGSHVFGFFLDK 57 (144)
T ss_dssp B---GGGS-EEEE---TT---BTTBSS-S----TT-EEEEEESST
T ss_pred cccccccCcccceeccccccccCccCCCCCcccccCEEEEEEecc
Confidence 479999999987776641 2223356899999999984
No 3
>PHA02926 zinc finger-like protein; Provisional
Probab=65.47 E-value=3.2 Score=27.35 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=20.9
Q ss_pred hhhhhcCCCceEEEeEEEEEeccCCCCCCCCeEEEeeeeE
Q psy8 3 NYARKMTIPIDHLTFDFVVLQINKSEAPPEDGVYCYGLFL 42 (50)
Q Consensus 3 ~~ARk~~ipiD~l~~~~~v~~~~~~~~~p~~GvyI~GLfL 42 (50)
+.||..++.+|+|+++..- .+.-..|||+|+
T Consensus 73 ~~s~e~~i~~~~l~~~i~~---------~~~~~~i~G~~i 103 (242)
T PHA02926 73 NLSRDTGIQQSKLTETIRN---------CQKNRNIYGLYI 103 (242)
T ss_pred hhhHhhCcchhhhhhhhhh---------ccccceEEEEEe
Confidence 5677888999998876432 233446777775
No 4
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=58.49 E-value=11 Score=23.26 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=13.5
Q ss_pred hhhhhhcCCCceEEEe
Q psy8 2 QNYARKMTIPIDHLTF 17 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~ 17 (50)
|+||-...-|+|.|++
T Consensus 37 ~~YAvE~~T~~drLSl 52 (153)
T PF04831_consen 37 ETYAVEGKTPIDRLSL 52 (153)
T ss_pred ceeeecCCcccceEeE
Confidence 6788888899999887
No 5
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=58.26 E-value=4.7 Score=21.99 Aligned_cols=13 Identities=46% Similarity=0.963 Sum_probs=8.3
Q ss_pred CCCCeEEEeeeeE
Q psy8 30 PPEDGVYCYGLFL 42 (50)
Q Consensus 30 ~p~~GvyI~GLfL 42 (50)
.|.+|+|+|==+.
T Consensus 6 ~P~~gvYvYfR~~ 18 (78)
T PF10438_consen 6 APQDGVYVYFRYY 18 (78)
T ss_dssp --BTTEEEEEEEE
T ss_pred CccCCEEEEEEEc
Confidence 4899999984333
No 6
>PHA02596 5 baseplate hub subunit and tail lysozyme; Provisional
Probab=56.51 E-value=10 Score=27.79 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=27.8
Q ss_pred cCCCceEEEeEEEEEecc--------CCCCCCCCeEEEeeeeEeee
Q psy8 8 MTIPIDHLTFDFVVLQIN--------KSEAPPEDGVYCYGLFLDGA 45 (50)
Q Consensus 8 ~~ipiD~l~~~~~v~~~~--------~~~~~p~~GvyI~GLfLeGA 45 (50)
+.+|-+.|-|-.-+++.. .......+|+.|+|+||++-
T Consensus 44 ~~~~te~l~w~~~~~~~~~~~~~g~g~~~~~~~~g~~v~g~~~d~~ 89 (576)
T PHA02596 44 YGIPTEDLPWMSVIQPITSAAISGIGQSPTGIVEGTHVYGHFLDKW 89 (576)
T ss_pred cCcccccCccccccccccccccCCCCCCCCccccccEEEEEEeccc
Confidence 578989988877665531 23344578999999999963
No 7
>PF02566 OsmC: OsmC-like protein; InterPro: IPR003718 Osmotically inducible protein C (OsmC) is a stress-induced protein found in Escherichia coli. The transcription of the osmC gene of E. coli is regulated as a function of the phase of growth and is induced during the late exponential phase when the growth rate slows before entry into stationary phase. The transcription is initiated by two overlapping promoters, osmCp1 and osmCp2 []. An organic hydroperoxide detoxification protein (OHR) from Xanthomonas campestris pv. phaseoli is highly induced by organic hydroperoxides, weakly induced by H2O2, and not induced at all by a superoxide generator. Ohr may be a new type of organic hydroperoxide detoxification protein [, ].; GO: 0006950 response to stress; PDB: 2D7V_A 2BJO_A 1USP_A 2PN2_A 2QL8_A 1N2F_A 1UKK_A 1VLA_D 3CJE_A 2ONF_B ....
Probab=54.05 E-value=12 Score=19.74 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=16.6
Q ss_pred hhhhhhcCCCceEEEeEEEEEe
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~ 23 (50)
+.+|++.+++++.+..+.+...
T Consensus 25 ~~~a~~~gi~~~~~~v~v~~~~ 46 (100)
T PF02566_consen 25 RMVAEKRGIDLEDLEVEVEGEL 46 (100)
T ss_dssp HHHHHHTT-EEEEEEEEEEEEE
T ss_pred HHHHHHcCCCcceEEEEEEEEE
Confidence 5678999999999887777643
No 8
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=48.61 E-value=19 Score=17.81 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=11.5
Q ss_pred CCCCCeEEEeeeeE
Q psy8 29 APPEDGVYCYGLFL 42 (50)
Q Consensus 29 ~~p~~GvyI~GLfL 42 (50)
.++.+|..|.|-||
T Consensus 7 ~~~~~GI~I~~~fI 20 (46)
T PF10764_consen 7 KEKEEGIHIYGKFI 20 (46)
T ss_pred CcCCCCEEEECeEe
Confidence 45677999999887
No 9
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=45.03 E-value=14 Score=19.84 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=16.3
Q ss_pred hhhhhhcCCCceEEEeEEEE
Q psy8 2 QNYARKMTIPIDHLTFDFVV 21 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v 21 (50)
+.|+.+.++|.+++.|-|.=
T Consensus 39 ~~y~~~~gi~~~~~rf~f~G 58 (87)
T cd01763 39 EAYCQRQGLSMNSVRFLFDG 58 (87)
T ss_pred HHHHHHhCCCccceEEEECC
Confidence 46788889999998888763
No 10
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=41.77 E-value=54 Score=18.41 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=22.5
Q ss_pred cCCCceEEEeEEEEEec-------------c------CCCCCCCCeEEEeeeeEe
Q psy8 8 MTIPIDHLTFDFVVLQI-------------N------KSEAPPEDGVYCYGLFLD 43 (50)
Q Consensus 8 ~~ipiD~l~~~~~v~~~-------------~------~~~~~p~~GvyI~GLfLe 43 (50)
+++||.++..+..+.+. . .+.-|-.+|+.|+|+.|.
T Consensus 1 ~~~~l~s~~v~~~I~~~~a~t~v~q~f~N~~~~~~E~~y~fpLp~~A~i~~f~~~ 55 (118)
T PF08487_consen 1 NQVPLKSVHVKVTIIDRFARTTVTQTFENPSSEPLEAVYSFPLPEGAAISGFSMW 55 (118)
T ss_pred CCceEEEEEEEEEEEccEEEEEEEEEEECCCCCcEEEEEEeECCCCeEEEEEEEE
Confidence 46788888887777553 0 112234567788887664
No 11
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=40.83 E-value=12 Score=19.36 Aligned_cols=11 Identities=27% Similarity=1.150 Sum_probs=8.4
Q ss_pred eeeEeeeccCC
Q psy8 39 GLFLDGARWDR 49 (50)
Q Consensus 39 GLfLeGA~Wd~ 49 (50)
+.-.||+.||+
T Consensus 33 aVLFEGGnWdK 43 (53)
T PF11623_consen 33 AVLFEGGNWDK 43 (53)
T ss_dssp EEEEEETTEEE
T ss_pred EEEecCCCceE
Confidence 35679999985
No 12
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=35.49 E-value=43 Score=19.56 Aligned_cols=23 Identities=9% Similarity=-0.106 Sum_probs=18.5
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
..+|++.+++++.+..+.++.-.
T Consensus 61 ~~ia~k~~~~~~~~~v~a~~~l~ 83 (135)
T TIGR03562 61 SAALAEAGFTPESLDTTATVTLD 83 (135)
T ss_pred HHHHHHCCCCCceeEEEEEEEEE
Confidence 46789999999998888777654
No 13
>COG5654 Uncharacterized conserved protein [Function unknown]
Probab=33.45 E-value=20 Score=22.38 Aligned_cols=16 Identities=25% Similarity=0.717 Sum_probs=12.1
Q ss_pred CCCCeEEEeeeeEeeeccCCC
Q psy8 30 PPEDGVYCYGLFLDGARWDRT 50 (50)
Q Consensus 30 ~p~~GvyI~GLfLeGA~Wd~~ 50 (50)
-..+|++|. |+|||.+
T Consensus 26 ~sG~GA~i~-----GGRWNpk 41 (163)
T COG5654 26 FSGEGAAIF-----GGRWNPK 41 (163)
T ss_pred cCCCcceec-----ccccCCC
Confidence 347888888 6999864
No 14
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=33.10 E-value=20 Score=18.06 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=14.6
Q ss_pred hhhhhhcCCCc-eEEEeEEE
Q psy8 2 QNYARKMTIPI-DHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipi-D~l~~~~~ 20 (50)
+.||.+.++|. .++.|.|.
T Consensus 28 ~~~~~~~~i~~~~~~~l~fd 47 (72)
T PF11976_consen 28 EKYCEKKGIPPEESIRLIFD 47 (72)
T ss_dssp HHHHHHHTTTT-TTEEEEET
T ss_pred HHHHHhhCCCccceEEEEEC
Confidence 56888889999 77777653
No 15
>KOG2964|consensus
Probab=31.73 E-value=25 Score=24.36 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.0
Q ss_pred ChhhhhhcCCCceEEEeEEEEEe
Q psy8 1 MQNYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 1 lQ~~ARk~~ipiD~l~~~~~v~~ 23 (50)
||..+||++ |++-|.|+-+.-.
T Consensus 178 lRAvs~k~G-PV~ilH~DaH~Dt 199 (361)
T KOG2964|consen 178 LRAVSRKYG-PVSILHFDAHLDT 199 (361)
T ss_pred HHHHHHhhC-CceEEEeccCccc
Confidence 477899999 9999999876543
No 16
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=31.46 E-value=69 Score=15.37 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=9.9
Q ss_pred ChhhhhhcCCCce
Q psy8 1 MQNYARKMTIPID 13 (50)
Q Consensus 1 lQ~~ARk~~ipiD 13 (50)
||++++++++++.
T Consensus 5 L~e~~~~~~~~~~ 17 (67)
T PF00035_consen 5 LNEYCQKNKFPPP 17 (67)
T ss_dssp HHHHHHHCTSSEE
T ss_pred HHHHHHHcCCCCC
Confidence 5788999886654
No 17
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=30.68 E-value=33 Score=22.98 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=15.4
Q ss_pred hhhcCCCceEEEeEEEEEe
Q psy8 5 ARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 5 ARk~~ipiD~l~~~~~v~~ 23 (50)
-|+++||+|.+.++..-+.
T Consensus 33 ~r~~~IP~D~i~lDidy~~ 51 (332)
T cd06601 33 YRDNNIPLDGLHVDVDFQD 51 (332)
T ss_pred HHHcCCCCceEEEcCchhc
Confidence 3678999999999877654
No 18
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.56 E-value=38 Score=21.91 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=13.1
Q ss_pred hhcCCCceEEEeEEEE
Q psy8 6 RKMTIPIDHLTFDFVV 21 (50)
Q Consensus 6 Rk~~ipiD~l~~~~~v 21 (50)
|+++||+|.|.++...
T Consensus 35 r~~~iP~D~i~lD~dw 50 (292)
T cd06595 35 KKHNIPLDVLVIDMDW 50 (292)
T ss_pred HHhCCCccEEEEeccc
Confidence 6779999999987553
No 19
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=29.33 E-value=43 Score=17.86 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=11.5
Q ss_pred hhhhhcCCCceEEE
Q psy8 3 NYARKMTIPIDHLT 16 (50)
Q Consensus 3 ~~ARk~~ipiD~l~ 16 (50)
.+||+.++|.|+|+
T Consensus 62 ~~~~~aG~p~d~I~ 75 (77)
T PF14026_consen 62 EHARRAGLPADRIT 75 (77)
T ss_pred HHHHHcCCCcceEE
Confidence 56788899999875
No 20
>TIGR00296 uncharacterized protein, PH0010 family. Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.
Probab=29.26 E-value=58 Score=20.53 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceEEEeEEEEEec-cCCC-----------CCCCCeEEE-----eeeeEeee
Q psy8 12 IDHLTFDFVVLQI-NKSE-----------APPEDGVYC-----YGLFLDGA 45 (50)
Q Consensus 12 iD~l~~~~~v~~~-~~~~-----------~~p~~GvyI-----~GLfLeGA 45 (50)
++.|.++..|++. +.+. .+..+|++| .|+||-.-
T Consensus 97 L~~l~ieVSvL~~~e~i~~~~~~~~~~~~~~G~hGlii~~g~~~gt~LPqV 147 (200)
T TIGR00296 97 LDDIKVEVSILTPPETIFVGGPKDYPFDIEIGRHGLIVEFGPKRGLLLPQV 147 (200)
T ss_pred hCCcEEEEEeCCCCEEcccCCccccHHHcccccceEEEEECCccEEECCcc
Confidence 6788899888875 2221 345677765 45666443
No 21
>TIGR03563 perox_SACOL1771 peroxiredoxin, SACOL1771 subfamily. This protein family belongs to the OsmC/Ohr family (pfam02566, OsmC-like protein) of peroxiredoxins.
Probab=28.61 E-value=87 Score=17.82 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=16.3
Q ss_pred hhhhhcCCCceEEEeEEEEE
Q psy8 3 NYARKMTIPIDHLTFDFVVL 22 (50)
Q Consensus 3 ~~ARk~~ipiD~l~~~~~v~ 22 (50)
.+|++.+++++.+..+.+..
T Consensus 61 ~~a~~~gi~~~~~~v~~~~~ 80 (138)
T TIGR03563 61 AMLERAGLEDEKLTLESEGI 80 (138)
T ss_pred HHHHHcCCcceEEEEEEEEE
Confidence 57899999999888777654
No 22
>KOG1769|consensus
Probab=28.51 E-value=51 Score=18.99 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=17.6
Q ss_pred hhhhhcCCCceEEEeEEEEEe
Q psy8 3 NYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 3 ~~ARk~~ipiD~l~~~~~v~~ 23 (50)
.||++.+++.+++.|-|+=.+
T Consensus 49 aYc~r~Gl~~~s~RFlFdG~r 69 (99)
T KOG1769|consen 49 AYCERQGLSMNSLRFLFDGQR 69 (99)
T ss_pred HHHHHcCCccceEEEEECCcC
Confidence 589999999999999887444
No 23
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=28.19 E-value=50 Score=22.36 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=15.8
Q ss_pred hhhhhcCCCceE-EEeEEEEEec
Q psy8 3 NYARKMTIPIDH-LTFDFVVLQI 24 (50)
Q Consensus 3 ~~ARk~~ipiD~-l~~~~~v~~~ 24 (50)
.|.=||++|+|. +.|+..+++.
T Consensus 169 SFGFKyGiP~DADlVFDVRfLPN 191 (286)
T COG1660 169 SFGFKYGIPIDADLVFDVRFLPN 191 (286)
T ss_pred ecccccCCCCCcceEEEecccCC
Confidence 344589999996 6777777664
No 24
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=27.79 E-value=49 Score=21.34 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=13.6
Q ss_pred hhhcCCCceEEEeEEEEE
Q psy8 5 ARKMTIPIDHLTFDFVVL 22 (50)
Q Consensus 5 ARk~~ipiD~l~~~~~v~ 22 (50)
.|+++||+|.+.++..-+
T Consensus 33 ~~~~~iP~d~~~lD~~w~ 50 (308)
T cd06593 33 MRERNLPCDVIHLDCFWM 50 (308)
T ss_pred HHHcCCCeeEEEEecccc
Confidence 468899999988775443
No 25
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=27.64 E-value=31 Score=24.13 Aligned_cols=9 Identities=56% Similarity=0.944 Sum_probs=6.4
Q ss_pred eEEEeeeeE
Q psy8 34 GVYCYGLFL 42 (50)
Q Consensus 34 GvyI~GLfL 42 (50)
|.|+||||=
T Consensus 417 GtYlHgl~~ 425 (475)
T TIGR00313 417 GTYLHGLFE 425 (475)
T ss_pred EEeeeeccC
Confidence 667888763
No 26
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=27.32 E-value=44 Score=21.91 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.6
Q ss_pred hhcCCCceEEEeEEE
Q psy8 6 RKMTIPIDHLTFDFV 20 (50)
Q Consensus 6 Rk~~ipiD~l~~~~~ 20 (50)
|+++||+|.|.++..
T Consensus 34 ~~~~iP~d~i~lD~~ 48 (319)
T cd06591 34 RKRGIPLDVIVQDWF 48 (319)
T ss_pred HHhCCCccEEEEech
Confidence 678999999998854
No 27
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=27.25 E-value=30 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.9
Q ss_pred EEeeeeEeeeccCC
Q psy8 36 YCYGLFLDGARWDR 49 (50)
Q Consensus 36 yI~GLfLeGA~Wd~ 49 (50)
-++||-++|++|..
T Consensus 159 ~~~~Lti~g~KypL 172 (212)
T COG1564 159 DVAGLTIKGAKYPL 172 (212)
T ss_pred cccceEeccceeec
Confidence 46899999999975
No 28
>PRK10738 hypothetical protein; Provisional
Probab=27.25 E-value=55 Score=19.04 Aligned_cols=22 Identities=5% Similarity=-0.070 Sum_probs=17.1
Q ss_pred hhhhhhcCCCceEEEeEEEEEe
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~ 23 (50)
..+++|++++++.+..+.+-..
T Consensus 53 ~~~l~k~~~~~~~~~v~v~~~r 74 (134)
T PRK10738 53 VSILQKGRQDVVDCEVKLTSER 74 (134)
T ss_pred HHHHHHCCCCcccEEEEEEEEE
Confidence 3578999999999887776543
No 29
>PF08577 PI31_Prot_C: PI31 proteasome regulator ; InterPro: IPR013886 PI31 is a cellular regulator of proteasome formation and of proteasome-mediated antigen processing [].
Probab=26.48 E-value=23 Score=18.92 Aligned_cols=12 Identities=42% Similarity=0.481 Sum_probs=8.2
Q ss_pred eeeeEeeeccCC
Q psy8 38 YGLFLDGARWDR 49 (50)
Q Consensus 38 ~GLfLeGA~Wd~ 49 (50)
.+=+.-|||||-
T Consensus 59 ~~~vPPGARfDP 70 (73)
T PF08577_consen 59 PGGVPPGARFDP 70 (73)
T ss_pred CCCCCCCCccCC
Confidence 445677889873
No 30
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=25.94 E-value=39 Score=22.44 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.6
Q ss_pred hhcCCCceEEEeEEEEEe
Q psy8 6 RKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 6 Rk~~ipiD~l~~~~~v~~ 23 (50)
|+++||+|.+.++...+.
T Consensus 34 r~~~iP~d~i~lD~~~~~ 51 (339)
T cd06602 34 RAAGIPLDVQWNDIDYMD 51 (339)
T ss_pred HHhCCCcceEEECccccc
Confidence 678999999998866543
No 31
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.91 E-value=52 Score=21.55 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=12.7
Q ss_pred hhcCCCceEEEeEEEE
Q psy8 6 RKMTIPIDHLTFDFVV 21 (50)
Q Consensus 6 Rk~~ipiD~l~~~~~v 21 (50)
|+++||+|.|.++...
T Consensus 34 ~~~~iP~d~i~lD~~w 49 (317)
T cd06598 34 REKDFPLDAAILDLYW 49 (317)
T ss_pred HHhCCCceEEEEechh
Confidence 6789999999887543
No 32
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.76 E-value=45 Score=21.17 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.0
Q ss_pred hhhcCCCceEEEeEEEEEe
Q psy8 5 ARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 5 ARk~~ipiD~l~~~~~v~~ 23 (50)
-|++++|+|.+.++...+.
T Consensus 33 ~~~~~iP~d~~~lD~~~~~ 51 (265)
T cd06589 33 MRENDIPLDGFVLDDDYTD 51 (265)
T ss_pred HHHcCCCccEEEECccccc
Confidence 3678999999998866544
No 33
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=25.26 E-value=47 Score=21.92 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=13.3
Q ss_pred hhhcCCCceEEEeEEEE
Q psy8 5 ARKMTIPIDHLTFDFVV 21 (50)
Q Consensus 5 ARk~~ipiD~l~~~~~v 21 (50)
.|+++||+|.|.++...
T Consensus 33 ~~~~~iP~d~i~lD~~~ 49 (339)
T cd06603 33 FDEHDIPYDVIWLDIEH 49 (339)
T ss_pred HHHcCCCceEEEEChHH
Confidence 36789999999887543
No 34
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=24.53 E-value=53 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.6
Q ss_pred hhhcCCCceEEEeE
Q psy8 5 ARKMTIPIDHLTFD 18 (50)
Q Consensus 5 ARk~~ipiD~l~~~ 18 (50)
-|+++||+|.+.++
T Consensus 32 ~~~~~iP~d~i~ld 45 (317)
T cd06594 32 ARAAGVKVAGLWLQ 45 (317)
T ss_pred HHHcCCCeeEEEEc
Confidence 36789999999875
No 35
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.32 E-value=57 Score=21.38 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.7
Q ss_pred hhcCCCceEEEeEE
Q psy8 6 RKMTIPIDHLTFDF 19 (50)
Q Consensus 6 Rk~~ipiD~l~~~~ 19 (50)
|+++||+|.+.++.
T Consensus 39 r~~~iP~d~i~ld~ 52 (317)
T cd06599 39 REHDIPCDSFHLSS 52 (317)
T ss_pred HHcCCCeeEEEEec
Confidence 67899999998763
No 36
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=24.11 E-value=49 Score=21.72 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=14.1
Q ss_pred hhcCCCceEEEeEEEEEe
Q psy8 6 RKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 6 Rk~~ipiD~l~~~~~v~~ 23 (50)
|+++||+|.|.++...++
T Consensus 34 ~~~~iP~d~i~lD~~~~~ 51 (317)
T cd06600 34 QKEGFPYDVVFLDIHYMD 51 (317)
T ss_pred HHcCCCcceEEEChhhhC
Confidence 678999999988865543
No 37
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=23.88 E-value=11 Score=21.18 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=12.3
Q ss_pred ChhhhhhcCCCceEEE
Q psy8 1 MQNYARKMTIPIDHLT 16 (50)
Q Consensus 1 lQ~~ARk~~ipiD~l~ 16 (50)
|+..|++|++|+.+|+
T Consensus 57 L~~La~~N~v~feeLc 72 (82)
T PF11020_consen 57 LYKLAKENNVSFEELC 72 (82)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 4567899999987764
No 38
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.35 E-value=1e+02 Score=21.51 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=18.8
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
++.+|-.-+|+++++++|+|+..
T Consensus 109 ~ea~~y~PyP~EEv~lDy~vlg~ 131 (354)
T COG4972 109 SEASRYIPYPLEEVNLDYQVLGP 131 (354)
T ss_pred HHHhhcCCCchhhcccceEEecc
Confidence 34556667999999999999886
No 39
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=23.13 E-value=51 Score=21.71 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.0
Q ss_pred hhhcCCCceEEEeEEE
Q psy8 5 ARKMTIPIDHLTFDFV 20 (50)
Q Consensus 5 ARk~~ipiD~l~~~~~ 20 (50)
-|+++||+|.+.++..
T Consensus 33 ~~~~~iP~d~i~lD~~ 48 (339)
T cd06604 33 FRERDIPCDAIYLDID 48 (339)
T ss_pred HHHhCCCcceEEECch
Confidence 3678999999999844
No 40
>PF02760 HIN: HIN-200/IF120x domain; InterPro: IPR004021 This domain has no known function. It is found in one or two copies per protein, and is found associated with the PAAD/DAPIN domain IPR004020 from INTERPRO.; PDB: 3RN2_A 3RN5_C 2OQ0_A 3B6Y_A 3RLN_A 3RNU_A 3RLO_A.
Probab=23.13 E-value=61 Score=20.39 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=10.2
Q ss_pred CCCeEEEeeeeE
Q psy8 31 PEDGVYCYGLFL 42 (50)
Q Consensus 31 p~~GvyI~GLfL 42 (50)
-..|.+|+|+|+
T Consensus 110 q~~Gt~V~G~F~ 121 (170)
T PF02760_consen 110 QASGTFVNGLFT 121 (170)
T ss_dssp SSTTEEEEEEEE
T ss_pred CCCCcEEeEEEE
Confidence 457999999996
No 41
>PF05692 Myco_haema: Mycoplasma haemagglutinin; InterPro: IPR008692 This family consists of several haemagglutinin sequences from Mycoplasma gallisepticum. The major plasma membrane proteins, pMGAs, of Mycoplasma gallisepticum are cell adhesin (hemagglutinin) molecules. It has been shown that the genetic determinants that code for the haemagglutinins are organised into a large family of genes and that only one of these genes is predominately expressed in any given strain [, ].
Probab=23.01 E-value=99 Score=22.16 Aligned_cols=18 Identities=28% Similarity=0.601 Sum_probs=14.3
Q ss_pred CCCCCeE-EEeeeeEeeec
Q psy8 29 APPEDGV-YCYGLFLDGAR 46 (50)
Q Consensus 29 ~~p~~Gv-yI~GLfLeGA~ 46 (50)
..|.+|- ||.|-||.+..
T Consensus 335 NAP~~G~Y~ISGsYlt~~~ 353 (439)
T PF05692_consen 335 NAPKAGDYYISGSYLTSSN 353 (439)
T ss_pred eCCCCCceeEEEEEecCCc
Confidence 5688995 69999998763
No 42
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=22.62 E-value=33 Score=24.32 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=7.9
Q ss_pred CeEEEeeeeEe
Q psy8 33 DGVYCYGLFLD 43 (50)
Q Consensus 33 ~GvyI~GLfLe 43 (50)
-|.|+||+|..
T Consensus 178 ~GTYlHGifdn 188 (476)
T PRK06278 178 FGTMVHNFLDN 188 (476)
T ss_pred EEEecCcccCC
Confidence 46788888864
No 43
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.40 E-value=66 Score=21.43 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=11.1
Q ss_pred hhcCCCceEEEeE
Q psy8 6 RKMTIPIDHLTFD 18 (50)
Q Consensus 6 Rk~~ipiD~l~~~ 18 (50)
|+++||+|.|.++
T Consensus 34 ~~~~iP~d~i~lD 46 (340)
T cd06597 34 EEHGIPVTVVVIE 46 (340)
T ss_pred HHcCCCeeEEEEe
Confidence 6789999999775
No 44
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=22.24 E-value=27 Score=22.95 Aligned_cols=14 Identities=36% Similarity=0.562 Sum_probs=10.1
Q ss_pred hhhhhcCCCceEEE
Q psy8 3 NYARKMTIPIDHLT 16 (50)
Q Consensus 3 ~~ARk~~ipiD~l~ 16 (50)
+|||++++++|+|.
T Consensus 180 ~~a~~~~v~~~~l~ 193 (233)
T PF01745_consen 180 RFARKHQVTPDQLL 193 (233)
T ss_dssp HHHHHTT--GGGCC
T ss_pred HHHHHhCCCHHHHH
Confidence 58999999999864
No 45
>COG4352 RPL13 Ribosomal protein L13E [Translation, ribosomal structure and biogenesis]
Probab=21.80 E-value=45 Score=19.69 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=10.0
Q ss_pred hhhhhcCCCceE
Q psy8 3 NYARKMTIPIDH 14 (50)
Q Consensus 3 ~~ARk~~ipiD~ 14 (50)
++||+.+||+|.
T Consensus 74 ~~AR~LGI~VD~ 85 (113)
T COG4352 74 RKARTLGIAVDH 85 (113)
T ss_pred HHHHhhCcceeh
Confidence 478999999985
No 46
>TIGR03561 organ_hyd_perox peroxiredoxin, Ohr subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein.
Probab=21.77 E-value=69 Score=18.23 Aligned_cols=20 Identities=10% Similarity=0.079 Sum_probs=15.0
Q ss_pred hhhhhhcCCCce-EEEeEEEE
Q psy8 2 QNYARKMTIPID-HLTFDFVV 21 (50)
Q Consensus 2 Q~~ARk~~ipiD-~l~~~~~v 21 (50)
+.+|++.+++++ .+.++.++
T Consensus 59 ~~~a~~~g~~~~~~~~v~~~~ 79 (134)
T TIGR03561 59 KLVAGQAKVKLPADAEVTATV 79 (134)
T ss_pred HHHHHHcCCCCCCCcEEEEEE
Confidence 467899999997 46666665
No 47
>PHA00911 21 prohead core scaffolding protein and protease
Probab=21.72 E-value=1e+02 Score=20.05 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=11.2
Q ss_pred CCCeEEEeeeeEee
Q psy8 31 PEDGVYCYGLFLDG 44 (50)
Q Consensus 31 p~~GvyI~GLfLeG 44 (50)
.+...||+|+|++.
T Consensus 28 ~k~~l~ieGif~qa 41 (212)
T PHA00911 28 GKKDLYIEGIFMQA 41 (212)
T ss_pred CCccEEEEEEEEee
Confidence 34578999999985
No 48
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.67 E-value=73 Score=18.51 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.7
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
+.+|+++++|+..+.-.+.|...
T Consensus 48 ~~~a~~~~l~~~~l~~~~~V~~~ 70 (135)
T PF08284_consen 48 SSFAKKLGLPLEPLPRPIVVSAP 70 (135)
T ss_pred HHHHHhcCCEEEEccCeeEEecc
Confidence 57899999999998887777543
No 49
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=20.57 E-value=2.1e+02 Score=17.30 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=13.8
Q ss_pred cCCCceEEEeEEEEEec
Q psy8 8 MTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 8 ~~ipiD~l~~~~~v~~~ 24 (50)
|.+||+.+.++|++...
T Consensus 63 Hpi~l~~v~v~~~~~~~ 79 (140)
T cd01420 63 HPLPLTGVDVDFELDEE 79 (140)
T ss_pred CCCcccEEEEEEEEcCC
Confidence 46899999999987553
No 50
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=20.46 E-value=50 Score=21.59 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=6.2
Q ss_pred eeEeeecc
Q psy8 40 LFLDGARW 47 (50)
Q Consensus 40 LfLeGA~W 47 (50)
|||+|||.
T Consensus 161 lhmDGARl 168 (290)
T PF01212_consen 161 LHMDGARL 168 (290)
T ss_dssp EEEEETTH
T ss_pred EEEehhhH
Confidence 67999983
No 51
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=20.18 E-value=78 Score=21.51 Aligned_cols=11 Identities=45% Similarity=1.238 Sum_probs=8.5
Q ss_pred CCCCCeEEEee
Q psy8 29 APPEDGVYCYG 39 (50)
Q Consensus 29 ~~p~~GvyI~G 39 (50)
.++..|+|++|
T Consensus 59 ~~~~~GlYl~G 69 (362)
T PF03969_consen 59 PPPPKGLYLWG 69 (362)
T ss_pred CCCCceEEEEC
Confidence 45678999988
No 52
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=20.12 E-value=81 Score=21.92 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=13.6
Q ss_pred hhhhhcCCCceEEEeEEEEEe
Q psy8 3 NYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 3 ~~ARk~~ipiD~l~~~~~v~~ 23 (50)
++++++++|+|-++|+..-..
T Consensus 217 ~~~~~~~~~~DfiS~H~y~~~ 237 (486)
T PF01229_consen 217 EFCKGNNCPLDFISFHSYGTD 237 (486)
T ss_dssp HHHHHCT---SEEEEEEE-BE
T ss_pred HHHhcCCCCCCEEEEEecccc
Confidence 578889999999999866543
Done!