Query psy8
Match_columns 50
No_of_seqs 145 out of 745
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 00:13:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 99.6 2.6E-17 8.8E-22 127.5 1.0 47 1-50 3120-3167(3245)
2 1x49_A Interferon-induced, dou 50.7 22 0.00074 18.9 3.4 36 1-44 20-55 (97)
3 1wth_A Protein GP5, tail-assoc 49.1 5.8 0.0002 27.6 1.0 37 8-44 45-89 (584)
4 2onf_A Hypothetical protein TA 47.4 15 0.00052 20.0 2.5 23 2-24 60-82 (140)
5 3adl_A RISC-loading complex su 43.8 29 0.00099 18.1 3.2 12 1-12 21-32 (88)
6 2e8e_A Hypothetical protein AQ 40.5 20 0.00067 19.4 2.2 23 2-24 51-73 (132)
7 1di2_A XLRBPA, double stranded 39.5 33 0.0011 16.6 2.8 12 1-12 6-17 (69)
8 1ml8_A Hypothetical protein (C 39.0 25 0.00085 19.0 2.5 22 2-23 53-74 (134)
9 1qwi_A OSMC, osmotically induc 37.1 25 0.00086 19.3 2.3 23 2-24 65-87 (143)
10 1ukk_A Osmotically inducible p 36.0 56 0.0019 17.9 4.1 23 2-24 63-85 (142)
11 2p9w_A MAL S 1 allergenic prot 35.3 6.7 0.00023 25.6 -0.4 13 37-49 10-22 (334)
12 2ww6_A Fibritin, T4 fibritin; 33.9 26 0.0009 15.1 1.6 11 28-38 4-15 (27)
13 3a4r_A Nfatc2-interacting prot 33.4 13 0.00044 18.8 0.6 19 2-20 36-54 (79)
14 2jz2_A SSL0352 protein; SH3-li 33.4 10 0.00036 19.6 0.3 11 39-49 33-43 (66)
15 1lql_A OSMC, osmotical inducib 32.6 29 0.00099 19.8 2.1 22 2-23 83-104 (166)
16 2io1_B Small ubiquitin-related 31.9 15 0.0005 19.4 0.7 19 2-20 35-53 (94)
17 3adg_A F21M12.9 protein; HYL1, 31.4 51 0.0017 16.1 3.5 12 1-12 9-20 (73)
18 2dbs_A Hypothetical protein TT 30.9 18 0.00062 19.5 1.0 16 29-44 55-71 (90)
19 2bgo_A Endo-B1,4-mannanase 5C; 29.8 28 0.00096 20.3 1.7 11 11-21 34-44 (140)
20 1ekz_A DSRBDIII, maternal effe 29.7 41 0.0014 16.6 2.2 39 1-44 13-53 (76)
21 2iih_A Molybdenum cofactor bio 29.4 73 0.0025 18.8 3.6 15 8-22 75-89 (157)
22 2d07_B Ubiquitin-like protein 29.2 17 0.00059 19.0 0.7 19 2-20 45-63 (93)
23 2bjo_A Organic hydroperoxide r 29.0 31 0.001 18.7 1.8 21 2-23 61-81 (136)
24 3opy_I 6-phosphofructo-1-kinas 29.0 11 0.00036 24.5 -0.2 14 2-15 56-70 (351)
25 1wm3_A Ubiquitin-like protein 28.9 13 0.00044 18.4 0.1 19 2-20 29-47 (72)
26 2io0_B Small ubiquitin-related 28.7 18 0.00063 19.0 0.8 19 2-20 33-51 (91)
27 2y6h_A Xylanase, CBM4-2; hydro 28.7 61 0.0021 18.9 3.1 29 14-42 127-164 (167)
28 1nye_A Osmotically inducible p 27.4 45 0.0015 19.0 2.3 23 2-24 84-106 (162)
29 3adj_A F21M12.9 protein; HYL1, 27.2 64 0.0022 15.9 4.1 12 1-12 10-21 (76)
30 2eke_C Ubiquitin-like protein 27.2 20 0.00067 19.6 0.7 19 2-20 58-76 (106)
31 3kyd_D Small ubiquitin-related 26.6 20 0.00069 20.0 0.7 19 2-20 68-86 (115)
32 3ewt_E Tumor necrosis factor r 26.0 22 0.00077 15.0 0.6 8 3-10 18-25 (25)
33 2cpn_A TAR RNA-binding protein 25.3 79 0.0027 16.3 3.6 12 1-12 22-33 (89)
34 2jxx_A Nfatc2-interacting prot 24.9 24 0.00081 19.0 0.8 19 2-20 54-72 (97)
35 2omk_A Hypothetical protein; s 24.3 39 0.0013 20.6 1.8 13 37-49 186-198 (231)
36 3k94_A Thiamin pyrophosphokina 24.3 39 0.0013 20.4 1.8 13 37-49 161-173 (223)
37 3bzy_B ESCU; auto cleavage pro 24.1 25 0.00085 18.5 0.7 12 3-14 34-45 (83)
38 2dix_A Interferon-inducible do 24.1 75 0.0026 16.1 2.7 9 1-9 14-22 (84)
39 2l76_A Nfatc2-interacting prot 23.9 24 0.00082 19.3 0.7 19 2-20 48-66 (95)
40 3eer_A Organic hydroperoxide r 23.2 30 0.001 19.3 1.0 21 2-22 70-90 (148)
41 3uf8_A Ubiquitin-like protein 22.9 20 0.0007 21.3 0.3 23 2-24 48-70 (209)
42 3s4y_A Thiamin pyrophosphokina 22.8 42 0.0014 20.6 1.7 13 37-49 196-208 (247)
43 2opl_A Hypothetical protein; s 22.6 61 0.0021 18.6 2.3 22 2-23 102-123 (187)
44 3lm8_A Thiamine pyrophosphokin 22.0 40 0.0014 20.3 1.5 13 37-49 164-176 (222)
45 3mel_A Thiamin pyrophosphokina 21.7 41 0.0014 20.3 1.5 13 37-49 164-176 (222)
46 2ql8_A Putative redox protein; 21.7 63 0.0021 17.7 2.2 20 2-22 65-84 (143)
47 1usp_A Organic hydroperoxide r 21.5 42 0.0014 18.2 1.4 22 2-23 63-85 (139)
48 3le4_A Microprocessor complex 21.5 18 0.00061 19.3 -0.2 12 4-15 65-76 (79)
49 2pn2_A Uncharacterized protein 21.3 31 0.0011 19.4 0.8 22 2-23 78-99 (155)
50 1uhz_A Staufen (RNA binding pr 21.2 98 0.0034 15.9 3.7 12 1-12 12-23 (89)
51 1vla_A Hydroperoxide resistanc 20.4 63 0.0022 18.0 2.0 22 2-23 67-90 (150)
52 3rlo_A Gamma-interferon-induci 20.4 54 0.0018 20.3 1.8 12 31-42 115-126 (204)
53 1zb9_A OHR, organic hydroperox 20.3 47 0.0016 18.2 1.5 22 2-23 67-89 (143)
54 3cje_A OSMC-like protein; stru 20.3 42 0.0014 18.9 1.3 19 2-20 79-97 (167)
55 2kkx_A Uncharacterized protein 20.1 44 0.0015 18.6 1.3 11 29-39 35-45 (102)
56 1zq7_A Hypothetical protein MM 20.0 93 0.0032 18.9 2.8 27 12-38 96-133 (207)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.63 E-value=2.6e-17 Score=127.47 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=29.3
Q ss_pred ChhhhhhcCCCceEEEe-EEEEEeccCCCCCCCCeEEEeeeeEeeeccCCC
Q psy8 1 MQNYARKMTIPIDHLTF-DFVVLQINKSEAPPEDGVYCYGLFLDGARWDRT 50 (50)
Q Consensus 1 lQ~~ARk~~ipiD~l~~-~~~v~~~~~~~~~p~~GvyI~GLfLeGA~Wd~~ 50 (50)
+|++||+++||||+|+| +|+|++.+. .|++|||||||||||||||.+
T Consensus 3120 ~Q~~ARk~~~plD~l~l~~~~V~~~~~---~p~~G~yI~GL~LeGA~WD~~ 3167 (3245)
T 3vkg_A 3120 RQSASQLNGWSLENLRLHASSLGKISS---EGGASFNVKGMALEGAVWNND 3167 (3245)
T ss_dssp HHHHHHHTC------CCCBC-------------CCEEECSCEEESCEECSS
T ss_pred HHHHHHHhCCCCccceeeeEEEecCCC---CCCceEEEeCEEEeccEecCC
Confidence 59999999999999999 999986532 289999999999999999963
No 2
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=50.68 E-value=22 Score=18.91 Aligned_cols=36 Identities=17% Similarity=0.541 Sum_probs=19.7
Q ss_pred ChhhhhhcCCCceEEEeEEEEEeccCCCCCCCCeEEEeeeeEee
Q psy8 1 MQNYARKMTIPIDHLTFDFVVLQINKSEAPPEDGVYCYGLFLDG 44 (50)
Q Consensus 1 lQ~~ARk~~ipiD~l~~~~~v~~~~~~~~~p~~GvyI~GLfLeG 44 (50)
||+++.+++++ + .|++.... -|+.+-.|...++++|
T Consensus 20 LqE~~Q~~~~~---p--~Y~~~~~~---Gp~H~~~F~v~v~i~g 55 (97)
T 1x49_A 20 LNKYRQMHGVA---I--TYKELSTS---GPPHDRRFTFQVLIDE 55 (97)
T ss_dssp HHHHHHHHTCC---E--EEEEEEEE---SCSSSCEEEEEEEESS
T ss_pred HHHHHHHcCCC---C--eEEEEEee---CCCCCCcEEEEEEECC
Confidence 69999998876 2 34443321 2233344555555544
No 3
>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded beta-helix, OB fold, pseudohexamer, T4 tail HUB, GP5-GP27; 2.80A {Enterobacteria phage T4} PDB: 2z6b_A 1k28_A 1pdl_A
Probab=49.12 E-value=5.8 Score=27.62 Aligned_cols=37 Identities=38% Similarity=0.605 Sum_probs=27.8
Q ss_pred cCCCceEEEeEEEEEecc--------CCCCCCCCeEEEeeeeEee
Q psy8 8 MTIPIDHLTFDFVVLQIN--------KSEAPPEDGVYCYGLFLDG 44 (50)
Q Consensus 8 ~~ipiD~l~~~~~v~~~~--------~~~~~p~~GvyI~GLfLeG 44 (50)
..+|.+.|-|-.-+++.. ........|.+|.|+||+|
T Consensus 45 ~~~~~~~lpw~~~~~~~~~~~~~g~~~~~~~~~~g~~v~g~~~d~ 89 (584)
T 1wth_A 45 MGIPTEKLPWMSVIQPITSAAMSGIGGSVTGPVEGTRVYGHFLDK 89 (584)
T ss_dssp BCCCGGGSCEEEECCCTTCCCBTTBSSCSCCCCTTCEEEEEECST
T ss_pred cccccccCccceeeccccccccCccCCCCCccccCCEEEEEEecc
Confidence 479999999987776541 2223457899999999998
No 4
>2onf_A Hypothetical protein TA0195; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE COA; 1.70A {Thermoplasma acidophilum} SCOP: d.227.1.1
Probab=47.45 E-value=15 Score=19.96 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=18.0
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
+.+|++.+++++.+..+.+..-.
T Consensus 60 ~~~a~~~g~~~~~~~v~~~~~~~ 82 (140)
T 2onf_A 60 LEFKDRMGINLKSWNSHVTAELG 82 (140)
T ss_dssp HHHHHHTTCCEEEEEEEEEEEEE
T ss_pred HHHHHHCCCCceEEEEEEEEEEe
Confidence 46789999999998887776543
No 5
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=43.85 E-value=29 Score=18.07 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=9.8
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||+++.++++++
T Consensus 21 LqE~~Q~~~~~~ 32 (88)
T 3adl_A 21 LQELVVQKGWRL 32 (88)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHcCCCC
Confidence 699999988764
No 6
>2e8e_A Hypothetical protein AQ_1549; osmatically induced protein; 1.70A {Aquifex aeolicus} PDB: 2e8c_A 2e8f_A 2egt_A
Probab=40.50 E-value=20 Score=19.41 Aligned_cols=23 Identities=4% Similarity=-0.042 Sum_probs=18.1
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
..+|++.+++++.+..+.+..-.
T Consensus 51 ~~~a~~~~~~~~~~~v~v~~~~~ 73 (132)
T 2e8e_A 51 YHILKKKRQEVKDIKIFLKGKRR 73 (132)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEC
T ss_pred HHHHHHCCCCceEEEEEEEEEEC
Confidence 45789999999998887777543
No 7
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=39.46 E-value=33 Score=16.64 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=9.8
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||+++.+++++.
T Consensus 6 LqE~~q~~~~~~ 17 (69)
T 1di2_A 6 LQELAVQKGWRL 17 (69)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHcCCCC
Confidence 699999988764
No 8
>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.60A {Escherichia coli} SCOP: d.227.1.2
Probab=39.01 E-value=25 Score=19.02 Aligned_cols=22 Identities=5% Similarity=-0.070 Sum_probs=17.6
Q ss_pred hhhhhhcCCCceEEEeEEEEEe
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~ 23 (50)
..+|++.+++++.+..+.+...
T Consensus 53 ~~~a~~~~~~~~~~~v~v~~~~ 74 (134)
T 1ml8_A 53 VSILQKGRQDVVDCEVKLTSER 74 (134)
T ss_dssp HHHHHHTTCCEEEEEEEEEEEE
T ss_pred HHHHHHcCCCceEEEEEEEEEE
Confidence 4578999999999888777754
No 9
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=37.06 E-value=25 Score=19.35 Aligned_cols=23 Identities=4% Similarity=-0.231 Sum_probs=18.0
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
..+|++.+++++.+..+.++.-.
T Consensus 65 ~~~a~~~g~~~~~~~v~~~~~~~ 87 (143)
T 1qwi_A 65 SLMLGEAGFTPTSIDTTADVSLD 87 (143)
T ss_dssp HHHHHHTTCCCSEEEEEEEEEEE
T ss_pred HHHHHHcCCCCceEEEEEEEEEE
Confidence 45789999999998877776543
No 10
>1ukk_A Osmotically inducible protein C; peroxidase, cysteinesulfinic acid, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.60A {Thermus thermophilus} SCOP: d.227.1.1
Probab=35.96 E-value=56 Score=17.94 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=18.4
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
..+|++.+++++.+..+.++.-.
T Consensus 63 ~~~a~~~g~~~~~~~v~~~~~~~ 85 (142)
T 1ukk_A 63 AASLEREGFPPKRVSTEARVHLE 85 (142)
T ss_dssp HHHHHHTTCCCSEEEEEEEEEEE
T ss_pred HHHHHHcCCCCCceEEEEEEEEE
Confidence 45789999999998887777654
No 11
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=35.32 E-value=6.7 Score=25.56 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=10.7
Q ss_pred EeeeeEeeeccCC
Q psy8 37 CYGLFLDGARWDR 49 (50)
Q Consensus 37 I~GLfLeGA~Wd~ 49 (50)
..+||-||++||.
T Consensus 10 ~~~~yPE~~~wd~ 22 (334)
T 2p9w_A 10 VKNLTPEDTIYDR 22 (334)
T ss_dssp CTTCCCSCEEEET
T ss_pred CcccCCcCccCcC
Confidence 3569999999985
No 12
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=33.89 E-value=26 Score=15.09 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=7.4
Q ss_pred CCCCCCe-EEEe
Q psy8 28 EAPPEDG-VYCY 38 (50)
Q Consensus 28 ~~~p~~G-vyI~ 38 (50)
.+.|.|| .||+
T Consensus 4 ~eAP~Dg~~Yvr 15 (27)
T 2ww6_A 4 PEAPRDAQAYVR 15 (27)
T ss_dssp BCCCSSSCEEEE
T ss_pred ccCCcCcceeEE
Confidence 4567888 6765
No 13
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=33.37 E-value=13 Score=18.84 Aligned_cols=19 Identities=26% Similarity=0.425 Sum_probs=14.8
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.++|.+++.|-|.
T Consensus 36 ~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 36 SHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp HHHHHHHTCTTCCCEEEET
T ss_pred HHHHHHhCCCcccEEEEEC
Confidence 4578888999998777663
No 14
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=33.36 E-value=10 Score=19.63 Aligned_cols=11 Identities=18% Similarity=0.963 Sum_probs=8.3
Q ss_pred eeeEeeeccCC
Q psy8 39 GLFLDGARWDR 49 (50)
Q Consensus 39 GLfLeGA~Wd~ 49 (50)
+.-.||+.||+
T Consensus 33 aVLFEGGnWDK 43 (66)
T 2jz2_A 33 AVLFENGNWDK 43 (66)
T ss_dssp EEEEESSSCEE
T ss_pred EEEecCCCcee
Confidence 35678999985
No 15
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=32.56 E-value=29 Score=19.79 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=17.5
Q ss_pred hhhhhhcCCCceEEEeEEEEEe
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~ 23 (50)
..+|++.+++++.+..+.+..-
T Consensus 83 ~~~a~~~gi~~~~~~v~v~~~~ 104 (166)
T 1lql_A 83 NLMAPAKMITINKLLMNVTGSR 104 (166)
T ss_dssp HHHHHHHTCCCSEEEEEEEEEE
T ss_pred HHHHHHCCCCcceEEEEEEEEE
Confidence 4578999999999887777653
No 16
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=31.86 E-value=15 Score=19.39 Aligned_cols=19 Identities=16% Similarity=0.536 Sum_probs=15.3
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
+.||.+.++|.+++.|-|.
T Consensus 35 ~~y~~~~gi~~~~~rf~Fd 53 (94)
T 2io1_B 35 KAYCERQGLSMRQIRFRFD 53 (94)
T ss_dssp HHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHhCCCcccEEEEEC
Confidence 5688889999998887664
No 17
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=31.45 E-value=51 Score=16.13 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.9
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||++++++++++
T Consensus 9 LqE~~q~~~~~~ 20 (73)
T 3adg_A 9 LQEYAQKYKLPT 20 (73)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHcCCCC
Confidence 699999988765
No 18
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=30.92 E-value=18 Score=19.50 Aligned_cols=16 Identities=50% Similarity=0.937 Sum_probs=12.7
Q ss_pred CCCCCe-EEEeeeeEee
Q psy8 29 APPEDG-VYCYGLFLDG 44 (50)
Q Consensus 29 ~~p~~G-vyI~GLfLeG 44 (50)
.|..+| -.||.|||+|
T Consensus 55 apn~EGwP~VYALFlqG 71 (90)
T 2dbs_A 55 APNPEGWPSVYALFLQG 71 (90)
T ss_dssp CCCSSSSCEEEEEEETT
T ss_pred CCCCCCChhHHHHHhCC
Confidence 456677 7899999987
No 19
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=29.76 E-value=28 Score=20.26 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=8.0
Q ss_pred CceEEEeEEEE
Q psy8 11 PIDHLTFDFVV 21 (50)
Q Consensus 11 piD~l~~~~~v 21 (50)
+=|+++|.++|
T Consensus 34 ~gdsVtf~VdV 44 (140)
T 2bgo_A 34 AGSAVIWNVDV 44 (140)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEec
Confidence 55788887776
No 20
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=29.72 E-value=41 Score=16.63 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=20.6
Q ss_pred ChhhhhhcCCCceEEEeEEEEEecc--CCCCCCCCeEEEeeeeEee
Q psy8 1 MQNYARKMTIPIDHLTFDFVVLQIN--KSEAPPEDGVYCYGLFLDG 44 (50)
Q Consensus 1 lQ~~ARk~~ipiD~l~~~~~v~~~~--~~~~~p~~GvyI~GLfLeG 44 (50)
||+++.++++++ .+++...+ +-...-.-.|+|.|.+=+|
T Consensus 13 LqE~~q~~~~~p-----~Y~~~~~~Gp~h~~~F~~~v~i~~~~~~G 53 (76)
T 1ekz_A 13 VHEIGIKRNMTV-----HFKVLREEGPAHMKNFITACIVGSIVTEG 53 (76)
T ss_dssp HHHHHHHTTCCC-----EEEESSSCCSSSCSCSSEEEEETTEEEEE
T ss_pred HHHHHHHcCCCC-----EEEEEEeECCCCCCcEEEEEEECCEEEEE
Confidence 689999888662 34444321 1111123467777744344
No 21
>2iih_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, structu genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 2ide_A 3jqj_A 3jqk_A 3jqm_A*
Probab=29.42 E-value=73 Score=18.82 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=13.0
Q ss_pred cCCCceEEEeEEEEE
Q psy8 8 MTIPIDHLTFDFVVL 22 (50)
Q Consensus 8 ~~ipiD~l~~~~~v~ 22 (50)
|.+||..+..+|++.
T Consensus 75 Hpl~lt~v~v~~~~~ 89 (157)
T 2iih_A 75 HPLPLTGVEVRVELL 89 (157)
T ss_dssp CCCCCSEEEEEEEEE
T ss_pred CccccceEEEEEEEc
Confidence 578999999999985
No 22
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=29.20 E-value=17 Score=18.98 Aligned_cols=19 Identities=16% Similarity=0.536 Sum_probs=15.0
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.++|.+++.|-|.
T Consensus 45 ~~y~~~~gi~~~~~rf~fd 63 (93)
T 2d07_B 45 KAYCERQGLSMRQIRFRFD 63 (93)
T ss_dssp HHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHhCCCccceEEEEC
Confidence 4578888999998877664
No 23
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=28.99 E-value=31 Score=18.73 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=16.1
Q ss_pred hhhhhhcCCCceEEEeEEEEEe
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~ 23 (50)
+.+|++.+++++.+ .+.++.-
T Consensus 61 ~~~a~~~g~~~~~~-v~~~~~~ 81 (136)
T 2bjo_A 61 EHVAKEQNIEIDSE-IEGQVSL 81 (136)
T ss_dssp HHHHHTTTCCCCCE-EEEEEEE
T ss_pred HHHHHHCCCCCCCe-EEEEEEE
Confidence 46789999999887 6666654
No 24
>3opy_I 6-phosphofructo-1-kinase gamma-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=28.96 E-value=11 Score=24.48 Aligned_cols=14 Identities=43% Similarity=0.838 Sum_probs=11.3
Q ss_pred hhhhhhc-CCCceEE
Q psy8 2 QNYARKM-TIPIDHL 15 (50)
Q Consensus 2 Q~~ARk~-~ipiD~l 15 (50)
|.++||+ +.|+|+|
T Consensus 56 q~fs~kndn~pv~kl 70 (351)
T 3opy_I 56 QEFSRKNDNAPVDKL 70 (351)
T ss_dssp HHHHHTTTSCCGGGH
T ss_pred HHhhhccCCCcHHHH
Confidence 7888887 6888875
No 25
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=28.88 E-value=13 Score=18.39 Aligned_cols=19 Identities=16% Similarity=0.536 Sum_probs=15.0
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.++|.+++.|-|.
T Consensus 29 ~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 29 KAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp HHHHHHHTCCTTTCEEEET
T ss_pred HHHHHHhCCCcceEEEEEC
Confidence 4678888999998877764
No 26
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=28.74 E-value=18 Score=18.95 Aligned_cols=19 Identities=16% Similarity=0.536 Sum_probs=15.3
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.++|.+++.|-|.
T Consensus 33 ~~y~~~~gi~~~~~rf~Fd 51 (91)
T 2io0_B 33 KAYCERQGLSMRQIRFRFD 51 (91)
T ss_dssp HHHHHHTTCCSTTEEEEET
T ss_pred HHHHHHhCCCcccEEEEEC
Confidence 4688889999998887764
No 27
>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A
Probab=28.67 E-value=61 Score=18.92 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEeEEEEEeccCC---------CCCCCCeEEEeeeeE
Q psy8 14 HLTFDFVVLQINKS---------EAPPEDGVYCYGLFL 42 (50)
Q Consensus 14 ~l~~~~~v~~~~~~---------~~~p~~GvyI~GLfL 42 (50)
-.+|+|.|.+.+.+ ......-+||.||-+
T Consensus 127 p~tfeftvsdqetvirapihfgyaan~gntiyid~l~i 164 (167)
T 2y6h_A 127 PFTFEFTVSDQETVIRAPIHFGYAANVGNTIYIDGLAI 164 (167)
T ss_dssp EEEEEEECCSSCSEEEEEEECCCGGGTTCEEEEEEEEE
T ss_pred ceEEEEEeccceeEEEeceeeeeeccCCCeEEEeEEEE
Confidence 45677777665422 233456789999875
No 28
>1nye_A Osmotically inducible protein C; OSMC, structural genomics, peroxiredoxin, BSGC structure funded by NIH, protein structure initiative, PSI; 2.40A {Escherichia coli} SCOP: d.227.1.1
Probab=27.36 E-value=45 Score=18.96 Aligned_cols=23 Identities=4% Similarity=-0.231 Sum_probs=18.1
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
..+|++.+++++.+..+.++.-.
T Consensus 84 ~~~a~~~gi~~~~~~v~~~~~~~ 106 (162)
T 1nye_A 84 SLMLGEAGFTPTSIDTTADVSLD 106 (162)
T ss_dssp HHHHHTTTCCCSEEEEEEEEEEE
T ss_pred HHHHHHCCCCCceEEEEEEEEEE
Confidence 45789999999998887777543
No 29
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=27.18 E-value=64 Score=15.94 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=9.7
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||+++.++++++
T Consensus 10 LqE~~q~~~~~~ 21 (76)
T 3adj_A 10 LQEYAQKMNYAI 21 (76)
T ss_dssp HHHHHHTTTCCC
T ss_pred HHHHHHHhCCCC
Confidence 699999888764
No 30
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=27.18 E-value=20 Score=19.58 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.3
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.++|.+++.|-|.
T Consensus 58 ~ay~ek~gi~~~~~rF~Fd 76 (106)
T 2eke_C 58 EAFAKRQGKEMDSLRFLYD 76 (106)
T ss_dssp HHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHhCCCcccEEEEEC
Confidence 4688889999998887764
No 31
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=26.62 E-value=20 Score=19.98 Aligned_cols=19 Identities=26% Similarity=0.703 Sum_probs=16.0
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.++|.+++.|-|.
T Consensus 68 ~aY~er~Gl~~~~irFlFD 86 (115)
T 3kyd_D 68 ESYCQRQGVPMNSLRFLFE 86 (115)
T ss_dssp HHHHHHHTCCTTSEEEEET
T ss_pred HHHHHHhCCChhhEEEEEC
Confidence 4688888999999988875
No 32
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=25.95 E-value=22 Score=14.98 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=5.6
Q ss_pred hhhhhcCC.
Q psy8 3 NYARKMTI. 10 (50)
Q Consensus 3 ~~ARk~~i. 10 (50)
.++|++++
T Consensus 18 ~fvR~~gi. 25 (25)
T 3ewt_E 18 GFVRKNGVx 26 (26)
T ss_pred HHHHHcCC.
Confidence 47888764
No 33
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=25.25 E-value=79 Score=16.31 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=9.8
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||+++.++++++
T Consensus 22 LqE~~Qk~~~~~ 33 (89)
T 2cpn_A 22 LQELVVQKGWRL 33 (89)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHcCCCC
Confidence 689999988764
No 34
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=24.92 E-value=24 Score=18.99 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.1
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.+++..++.|-|.
T Consensus 54 ~aY~~~~g~~~~~vrF~FD 72 (97)
T 2jxx_A 54 SHYEEAMGLSGRKLSFFFD 72 (97)
T ss_dssp HHHHHHTTCSSSCCEEEET
T ss_pred HHHHHHHCCCcccEEEEEC
Confidence 4688889999998777763
No 35
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=24.28 E-value=39 Score=20.59 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=11.3
Q ss_pred EeeeeEeeeccCC
Q psy8 37 CYGLFLDGARWDR 49 (50)
Q Consensus 37 I~GLfLeGA~Wd~ 49 (50)
+.|+.++|++|+.
T Consensus 186 ~~~lt~~Glky~L 198 (231)
T 2omk_A 186 AKGLKAEGLFYPL 198 (231)
T ss_dssp EEEEEEESBSSCC
T ss_pred cCcEEEeCcEEEC
Confidence 5789999999985
No 36
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=24.26 E-value=39 Score=20.43 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=10.9
Q ss_pred EeeeeEeeeccCC
Q psy8 37 CYGLFLDGARWDR 49 (50)
Q Consensus 37 I~GLfLeGA~Wd~ 49 (50)
+.|+.++|.+|+.
T Consensus 161 ~~~lt~~Glky~L 173 (223)
T 3k94_A 161 VAEFTLTGFKYPL 173 (223)
T ss_dssp EEEEEEESBSSCC
T ss_pred eeEEEEeccEEEC
Confidence 5689999999985
No 37
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=24.13 E-value=25 Score=18.48 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=9.2
Q ss_pred hhhhhcCCCceE
Q psy8 3 NYARKMTIPIDH 14 (50)
Q Consensus 3 ~~ARk~~ipiD~ 14 (50)
+.||++++||-+
T Consensus 34 ~~A~e~~VPi~e 45 (83)
T 3bzy_B 34 KLAELYDIPVIE 45 (83)
T ss_dssp HHHHHTTCCEEE
T ss_pred HHHHHcCCCEEe
Confidence 578899999743
No 38
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=24.08 E-value=75 Score=16.11 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=7.5
Q ss_pred ChhhhhhcC
Q psy8 1 MQNYARKMT 9 (50)
Q Consensus 1 lQ~~ARk~~ 9 (50)
||+++.+++
T Consensus 14 LqE~~q~~~ 22 (84)
T 2dix_A 14 LHEYGMKTK 22 (84)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 689998876
No 39
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=23.89 E-value=24 Score=19.28 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.3
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.+++.+++.|-|.
T Consensus 48 ~aYc~r~gv~~~sirFlfD 66 (95)
T 2l76_A 48 DHMATHLGVSPSRILLLFG 66 (95)
T ss_dssp HHHHHHHTSCGGGEEEEET
T ss_pred HHHHhhcCCChhhEEEEEC
Confidence 4689999999999998775
No 40
>3eer_A Organic hydroperoxide resistance protein, putativ; csgid, ORHC, struc genomics; 1.45A {Vibrio cholerae o1 biovar el tor} SCOP: d.227.1.0 PDB: 3i07_A* 3lus_A*
Probab=23.15 E-value=30 Score=19.29 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=16.5
Q ss_pred hhhhhhcCCCceEEEeEEEEE
Q psy8 2 QNYARKMTIPIDHLTFDFVVL 22 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~ 22 (50)
..+|++.+++++.+..+.++.
T Consensus 70 ~~~a~~~gi~~~~~~v~~~~~ 90 (148)
T 3eer_A 70 LHVAREAKVALKEAPVTATVG 90 (148)
T ss_dssp HHHHHHTTCCCSCCCEEEEEE
T ss_pred HHHHHHCCCCCceeEEEEEEE
Confidence 457899999999887776664
No 41
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=22.92 E-value=20 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=18.9
Q ss_pred hhhhhhcCCCceEEEeEEEEEec
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQI 24 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~~ 24 (50)
-.||.+.++|.+++.|-|+-...
T Consensus 48 ~~y~~~~g~~~~~~~f~fdG~~i 70 (209)
T 3uf8_A 48 EAFAKRQGKEMDSLRFLYDGIRI 70 (209)
T ss_dssp HHHHHHHTCCGGGCEEEETTEEC
T ss_pred HHHHHhhCCChheEEEEECCEec
Confidence 36889999999999998876553
No 42
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=22.78 E-value=42 Score=20.57 Aligned_cols=13 Identities=23% Similarity=0.792 Sum_probs=10.7
Q ss_pred EeeeeEeeeccCC
Q psy8 37 CYGLFLDGARWDR 49 (50)
Q Consensus 37 I~GLfLeGA~Wd~ 49 (50)
+.|+.++|++|+.
T Consensus 196 ~~~lt~~Glky~L 208 (247)
T 3s4y_A 196 CMQVTTTGLKWNL 208 (247)
T ss_dssp EEEEEEESBSSCC
T ss_pred eeEEEEeccEEEC
Confidence 4678999999985
No 43
>2opl_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE P6G; 1.50A {Geobacter sulfurreducens} SCOP: d.227.1.1 PDB: 2opl_B*
Probab=22.55 E-value=61 Score=18.57 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=17.7
Q ss_pred hhhhhhcCCCceEEEeEEEEEe
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~ 23 (50)
..+|++.+++++.+..+.+..-
T Consensus 102 ~~~a~~~gi~~~~~~v~v~~~~ 123 (187)
T 2opl_A 102 VAHAAARGIALRGVKSRYEGDI 123 (187)
T ss_dssp HHHHHHTTCCCSEEEEEEEEEE
T ss_pred HHHHHHCCCCceEEEEEEEEEE
Confidence 4578999999999888777754
No 44
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=21.99 E-value=40 Score=20.32 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=10.2
Q ss_pred EeeeeEeeeccCC
Q psy8 37 CYGLFLDGARWDR 49 (50)
Q Consensus 37 I~GLfLeGA~Wd~ 49 (50)
+.|+.++|++|+.
T Consensus 164 ~~~lt~~Glky~L 176 (222)
T 3lm8_A 164 IHELTLTGFKYPL 176 (222)
T ss_dssp EEEEEEESBSSCE
T ss_pred eeeEEEeCcEEEC
Confidence 4678899999973
No 45
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=21.69 E-value=41 Score=20.27 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=10.9
Q ss_pred EeeeeEeeeccCC
Q psy8 37 CYGLFLDGARWDR 49 (50)
Q Consensus 37 I~GLfLeGA~Wd~ 49 (50)
+.|+.++|++|+.
T Consensus 164 ~~~lt~~Glky~L 176 (222)
T 3mel_A 164 VENLTLRRSKYLL 176 (222)
T ss_dssp EEEEEEESBSSCE
T ss_pred cceEEEeccEEEC
Confidence 5789999999973
No 46
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=21.66 E-value=63 Score=17.69 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=13.9
Q ss_pred hhhhhhcCCCceEEEeEEEEE
Q psy8 2 QNYARKMTIPIDHLTFDFVVL 22 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~ 22 (50)
..+|++.+++++ +.++.+|.
T Consensus 65 ~~~a~~~g~~~~-~~v~~~v~ 84 (143)
T 2ql8_A 65 EAVEKEHGLPHT-GAVRVKVA 84 (143)
T ss_dssp HHHHHHTTCCCC-EEEEEEEE
T ss_pred HHHHHHcCCCCc-eEEEEEEE
Confidence 457899999997 45555553
No 47
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=21.53 E-value=42 Score=18.22 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=16.2
Q ss_pred hhhhhhcCCCce-EEEeEEEEEe
Q psy8 2 QNYARKMTIPID-HLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD-~l~~~~~v~~ 23 (50)
..+|++.+++++ .+..+.++.-
T Consensus 63 ~~~a~~~g~~~~~~~~v~~~~~~ 85 (139)
T 1usp_A 63 GVVSRRQKIDVPADSTITARVGL 85 (139)
T ss_dssp HHHHHHTTCCCCSSCEEEEEEEE
T ss_pred HHHHHHcCCCCCCceEEEEEEEE
Confidence 457899999997 7666666644
No 48
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=21.53 E-value=18 Score=19.30 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=9.2
Q ss_pred hhhhcCCCceEE
Q psy8 4 YARKMTIPIDHL 15 (50)
Q Consensus 4 ~ARk~~ipiD~l 15 (50)
.+|+|.+||-.+
T Consensus 65 svr~H~iPisaI 76 (79)
T 3le4_A 65 SIRKHDPPLSSI 76 (79)
T ss_dssp CTTTCCCCGGGC
T ss_pred cccccCCCcccc
Confidence 479999998654
No 49
>2pn2_A Uncharacterized protein; putative osmotic stress induced and detoxification response structural genomics; 1.95A {Psychrobacter arcticus} SCOP: d.227.1.1
Probab=21.34 E-value=31 Score=19.45 Aligned_cols=22 Identities=27% Similarity=0.188 Sum_probs=17.1
Q ss_pred hhhhhhcCCCceEEEeEEEEEe
Q psy8 2 QNYARKMTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~~ 23 (50)
+.+|++.+++++.+..+.+...
T Consensus 78 ~~~a~~~gi~~~~~~v~v~~~~ 99 (155)
T 2pn2_A 78 GIKARDMEIDIAGTTAEVTKVM 99 (155)
T ss_dssp HHHHHHTTCCCTTCEEEEEEEE
T ss_pred HHHHHHcCCCeeEEEEEEEEEE
Confidence 4678999999998777766644
No 50
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=21.18 E-value=98 Score=15.92 Aligned_cols=12 Identities=0% Similarity=-0.111 Sum_probs=9.6
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||+++.++++++
T Consensus 12 LqE~~Q~~~~~~ 23 (89)
T 1uhz_A 12 LAQIQQARKEKE 23 (89)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHhCCCC
Confidence 699999888764
No 51
>1vla_A Hydroperoxide resistance protein OSMC; TM0919, structural GE JCSG, protein structure initiative, PSI, joint center for S genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: d.227.1.2
Probab=20.38 E-value=63 Score=17.99 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=17.6
Q ss_pred hhhhhhcC--CCceEEEeEEEEEe
Q psy8 2 QNYARKMT--IPIDHLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~--ipiD~l~~~~~v~~ 23 (50)
..+|++.+ ++++.+..+.++..
T Consensus 67 ~~~a~~~g~~~~~~~~~v~v~~~~ 90 (150)
T 1vla_A 67 VSILRKMKVIDQMKDFRIEIEYER 90 (150)
T ss_dssp HHHHHHTTCGGGEEEEEEEEEEEE
T ss_pred HHHHHHCCCCcceeEEEEEEEEEE
Confidence 45788999 99999888777754
No 52
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=20.37 E-value=54 Score=20.31 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=10.3
Q ss_pred CCCeEEEeeeeE
Q psy8 31 PEDGVYCYGLFL 42 (50)
Q Consensus 31 p~~GvyI~GLfL 42 (50)
-..|.+|+|||+
T Consensus 115 q~~Gt~V~G~F~ 126 (204)
T 3rlo_A 115 QTKGSFVNGVFE 126 (204)
T ss_dssp CSSCEEEEEEEE
T ss_pred CCCCCEEeEEEE
Confidence 358999999997
No 53
>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa} PDB: 1zb8_A*
Probab=20.33 E-value=47 Score=18.21 Aligned_cols=22 Identities=14% Similarity=-0.052 Sum_probs=16.2
Q ss_pred hhhhhhcCCCce-EEEeEEEEEe
Q psy8 2 QNYARKMTIPID-HLTFDFVVLQ 23 (50)
Q Consensus 2 Q~~ARk~~ipiD-~l~~~~~v~~ 23 (50)
..+|++.+++++ .+..+.++.-
T Consensus 67 ~~~a~~~g~~~~~~~~v~~~~~~ 89 (143)
T 1zb9_A 67 KFVANKEKVDLPAEPRVEGRVGI 89 (143)
T ss_dssp HHHHHHTTCCCSSCCEEEEEEEE
T ss_pred HHHHHHcCCCCCCeeEEEEEEEE
Confidence 457899999997 7666666644
No 54
>3cje_A OSMC-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; HET: MSE; 1.70A {Jannaschia SP}
Probab=20.31 E-value=42 Score=18.87 Aligned_cols=19 Identities=11% Similarity=0.487 Sum_probs=15.3
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..+|++.+++++.+..+.+
T Consensus 79 ~~~a~~~gi~~~~~~v~v~ 97 (167)
T 3cje_A 79 RAFAKRLKVTVTDLDVECR 97 (167)
T ss_dssp HHHTTTTTCCCCSCEEEEE
T ss_pred HHHHHHcCCceEEEEEEEE
Confidence 4578999999999777763
No 55
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=20.09 E-value=44 Score=18.57 Aligned_cols=11 Identities=27% Similarity=0.746 Sum_probs=8.8
Q ss_pred CCCCCeEEEee
Q psy8 29 APPEDGVYCYG 39 (50)
Q Consensus 29 ~~p~~GvyI~G 39 (50)
..|+.||+|+.
T Consensus 35 ~~PE~GVFvkN 45 (102)
T 2kkx_A 35 EQPEKGIFVKN 45 (102)
T ss_dssp BCCSEEEEEEE
T ss_pred eeCCcceEEec
Confidence 46999999874
No 56
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=20.05 E-value=93 Score=18.89 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=17.9
Q ss_pred ceEEEeEEEEEec-cCC----------CCCCCCeEEEe
Q psy8 12 IDHLTFDFVVLQI-NKS----------EAPPEDGVYCY 38 (50)
Q Consensus 12 iD~l~~~~~v~~~-~~~----------~~~p~~GvyI~ 38 (50)
++.|.++..|++. +.+ -.+..+|++|.
T Consensus 96 L~~l~ieVsvLs~~e~~~~~~~~~~~~~~~G~hGlii~ 133 (207)
T 1zq7_A 96 MKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK 133 (207)
T ss_dssp GGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEE
T ss_pred HcCcEEEEEEccCCEEcccccccCHHHcCCCCceEEEE
Confidence 6778888888775 222 13457888775
Done!