Query psy8
Match_columns 50
No_of_seqs 145 out of 745
Neff 6.2
Searched_HMMs 13730
Date Sat Aug 17 00:13:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x49a1 d.50.1.1 (A:8-92) dsRN 70.2 3.5 0.00025 20.2 3.7 11 1-11 13-23 (85)
2 d1x48a1 d.50.1.1 (A:8-83) dsRN 61.1 3 0.00022 20.2 2.2 13 1-13 5-17 (76)
3 d1qu6a2 d.50.1.1 (A:91-179) ds 57.9 5.8 0.00043 19.4 3.1 12 1-12 20-31 (89)
4 d1h3ga2 b.71.1.1 (A:518-600) C 57.0 1.8 0.00013 21.7 0.9 9 30-38 6-14 (83)
5 d1o0wa2 d.50.1.1 (A:168-236) R 52.9 5.2 0.00038 18.4 2.3 12 1-12 6-17 (69)
6 d1di2a_ d.50.1.1 (A:) Double-s 51.7 5.3 0.00039 18.6 2.2 13 1-13 6-18 (69)
7 d1k42a_ b.18.1.14 (A:) Carbohy 49.4 6.1 0.00044 21.8 2.5 42 2-43 111-165 (168)
8 d1ekza_ d.50.1.1 (A:) Staufen, 44.1 3.1 0.00023 19.9 0.6 39 1-44 13-53 (76)
9 d1euvb_ d.15.1.1 (B:) SUMO-1 ( 39.4 5 0.00036 19.1 0.9 19 2-20 31-49 (79)
10 d2nuga2 d.50.1.1 (A:151-218) R 39.2 7 0.00051 18.0 1.4 12 1-12 6-17 (68)
11 d2dg1a1 b.68.6.1 (A:6-324) Lac 38.6 5.4 0.00039 22.8 1.1 13 38-50 38-50 (319)
12 d1qu6a1 d.50.1.1 (A:1-90) dsRN 36.8 11 0.00077 18.5 2.0 11 1-11 19-29 (90)
13 d2cpna1 d.50.1.1 (A:150-225) T 36.6 19 0.0014 16.7 2.9 14 1-14 15-28 (76)
14 d1k28a1 b.40.8.1 (A:6-129) Tai 33.6 6 0.00044 21.1 0.7 37 9-45 41-85 (124)
15 d1ig3a1 b.82.6.1 (A:179-263) T 33.1 11 0.00083 18.5 1.7 13 37-49 34-46 (85)
16 d2dbsa1 d.374.1.1 (A:7-86) Hyp 29.6 10 0.00074 18.7 1.1 17 29-45 49-66 (80)
17 d1y7ma2 d.7.1.1 (A:1-48) Hypot 29.2 5.1 0.00037 17.7 -0.1 14 3-16 14-27 (48)
18 d2q22a1 d.365.1.1 (A:8-138) Un 29.1 18 0.0013 19.4 2.2 12 1-12 61-72 (131)
19 d1ekra_ d.58.21.1 (A:) Molybde 28.9 18 0.0013 19.8 2.3 16 8-23 67-82 (146)
20 d1whna_ d.50.1.1 (A:) tRNA-dih 27.5 9.7 0.00071 20.1 0.9 13 1-13 32-44 (128)
21 d2dixa1 d.50.1.1 (A:7-79) Inte 27.3 29 0.0021 15.9 3.7 11 1-11 8-18 (73)
22 d2oq0a1 b.40.16.1 (A:115-202) 25.3 12 0.0009 19.0 1.0 12 31-42 9-20 (88)
23 d1x47a1 d.50.1.1 (A:8-92) Dgcr 24.8 36 0.0026 16.1 2.8 14 1-14 15-28 (85)
24 d2uyzb1 d.15.1.1 (B:20-96) SUM 23.1 16 0.0012 17.0 1.2 18 3-20 31-48 (77)
25 d2opla1 d.227.1.1 (A:4-185) Hy 22.2 29 0.0021 18.6 2.3 21 2-22 98-118 (182)
26 d2f2ha4 c.1.8.13 (A:248-585) P 22.1 18 0.0013 20.9 1.4 16 6-21 47-62 (338)
27 d1uhza_ d.50.1.1 (A:) staufen 21.9 44 0.0032 16.0 3.1 14 1-14 12-25 (89)
28 d2ch4w1 b.40.7.1 (W:9-147) Che 21.6 11 0.00081 18.9 0.4 31 7-40 14-44 (139)
29 d1wv3a2 b.26.1.4 (A:79-186) Pr 21.1 22 0.0016 18.1 1.5 14 31-44 75-88 (108)
30 d1eyqa_ d.36.1.1 (A:) Chalcone 20.7 25 0.0018 19.4 1.8 11 34-44 43-53 (212)
No 1
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.18 E-value=3.5 Score=20.19 Aligned_cols=11 Identities=9% Similarity=0.383 Sum_probs=9.2
Q ss_pred ChhhhhhcCCC
Q psy8 1 MQNYARKMTIP 11 (50)
Q Consensus 1 lQ~~ARk~~ip 11 (50)
||+|+++++++
T Consensus 13 L~E~~Qk~~~~ 23 (85)
T d1x49a1 13 LNKYRQMHGVA 23 (85)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHhcCCC
Confidence 68999999865
No 2
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.13 E-value=3 Score=20.17 Aligned_cols=13 Identities=15% Similarity=0.580 Sum_probs=11.3
Q ss_pred ChhhhhhcCCCce
Q psy8 1 MQNYARKMTIPID 13 (50)
Q Consensus 1 lQ~~ARk~~ipiD 13 (50)
||+||.++++|+.
T Consensus 5 L~E~~Qk~~~~~~ 17 (76)
T d1x48a1 5 VNSFAQKKKLSVN 17 (76)
T ss_dssp HHHHHHHTTCCEE
T ss_pred HHHHHHHhCCCCc
Confidence 6999999999874
No 3
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.85 E-value=5.8 Score=19.45 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=10.0
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||+||.++++++
T Consensus 20 L~E~~Qk~~~~~ 31 (89)
T d1qu6a2 20 INRIAQKKRLTV 31 (89)
T ss_dssp HHHHHHHSCCEE
T ss_pred HHHHHHhcCCCc
Confidence 689999998764
No 4
>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=57.04 E-value=1.8 Score=21.74 Aligned_cols=9 Identities=33% Similarity=0.911 Sum_probs=7.9
Q ss_pred CCCCeEEEe
Q psy8 30 PPEDGVYCY 38 (50)
Q Consensus 30 ~p~~GvyI~ 38 (50)
.|++|||++
T Consensus 6 ~P~~gvYvy 14 (83)
T d1h3ga2 6 GPEENTWVY 14 (83)
T ss_dssp CCBTTEEEE
T ss_pred ccCCCEEEE
Confidence 589999998
No 5
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=52.90 E-value=5.2 Score=18.43 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=9.0
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||+++.++++++
T Consensus 6 LqE~~Qk~~~~~ 17 (69)
T d1o0wa2 6 LQEIVQSEHKVP 17 (69)
T ss_dssp HHHHHHHHHSSC
T ss_pred HHHHHHHcCCCC
Confidence 688998876654
No 6
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=51.68 E-value=5.3 Score=18.61 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=10.9
Q ss_pred ChhhhhhcCCCce
Q psy8 1 MQNYARKMTIPID 13 (50)
Q Consensus 1 lQ~~ARk~~ipiD 13 (50)
||+++.++++|+-
T Consensus 6 LqE~~q~~~~~~P 18 (69)
T d1di2a_ 6 LQELAVQKGWRLP 18 (69)
T ss_dssp HHHHHHHHTCCCC
T ss_pred HHHHHHHcCCCCC
Confidence 6999999988863
No 7
>d1k42a_ b.18.1.14 (A:) Carbohydrate binding module from a thermostable xylanase {Rhodothermus marinus [TaxId: 29549]}
Probab=49.37 E-value=6.1 Score=21.83 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=24.0
Q ss_pred hhhhhhcCC----CceEEEeEEEEEeccCC---------CCCCCCeEEEeeeeEe
Q psy8 2 QNYARKMTI----PIDHLTFDFVVLQINKS---------EAPPEDGVYCYGLFLD 43 (50)
Q Consensus 2 Q~~ARk~~i----piD~l~~~~~v~~~~~~---------~~~p~~GvyI~GLfLe 43 (50)
|+|-|-|.- .-.-.+|+|.|.+.+.+ ......-+||.||-+-
T Consensus 111 qeygrlheqqittewqp~tfeftvsdqetvirapihfgyaan~gntiyid~l~ia 165 (168)
T d1k42a_ 111 QEYGRLHEQQITTEWQPFTFEFTVSDQETVIRAPIHFGYAANVGNTIYIDGLAIA 165 (168)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEECSSCCSEEEEEEEECCGGGSSEEEEEEEEEEE
T ss_pred HHhhhhhhhhceecccceEEEEEeccceeEEEeceeeeeeccCCCEEEEeEEEEe
Confidence 566665532 22345677777655422 2234556899999774
No 8
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=44.11 E-value=3.1 Score=19.93 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=21.3
Q ss_pred ChhhhhhcCCCceEEEeEEEEEeccCCCCCC--CCeEEEeeeeEee
Q psy8 1 MQNYARKMTIPIDHLTFDFVVLQINKSEAPP--EDGVYCYGLFLDG 44 (50)
Q Consensus 1 lQ~~ARk~~ipiD~l~~~~~v~~~~~~~~~p--~~GvyI~GLfLeG 44 (50)
||++|+++++|+. |++.........| .--|.|.|.+-+|
T Consensus 13 L~E~~q~~~~~~~-----y~~~~~~G~~h~~~F~~~v~v~~~~~~g 53 (76)
T d1ekza_ 13 VHEIGIKRNMTVH-----FKVLREEGPAHMKNFITACIVGSIVTEG 53 (76)
T ss_dssp HHHHHHHTTCCCE-----EEESSSCCSSSCSCSSEEEEETTEEEEE
T ss_pred HHHHHHhCCCCCe-----EEEEEeeCCCCCeEEEEEEEEeeeEeee
Confidence 6899999988744 5554432111111 2346666665554
No 9
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Probab=39.36 E-value=5 Score=19.08 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.7
Q ss_pred hhhhhhcCCCceEEEeEEE
Q psy8 2 QNYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~ 20 (50)
..||.+.++|.+++.|-|.
T Consensus 31 ~~~~~~~~i~~~~~~l~f~ 49 (79)
T d1euvb_ 31 EAFAKRQGKEMDSLRFLYD 49 (79)
T ss_dssp HHHHHHTTCCGGGEEEEET
T ss_pred HHHHHHhCCChHhEEEEEC
Confidence 4688899999999888764
No 10
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=39.16 E-value=7 Score=18.01 Aligned_cols=12 Identities=17% Similarity=0.025 Sum_probs=9.2
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
||+++.++++|+
T Consensus 6 LqE~~q~~~~~~ 17 (68)
T d2nuga2 6 LQEITQKRWKER 17 (68)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHcCCCC
Confidence 689998886655
No 11
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}
Probab=38.58 E-value=5.4 Score=22.79 Aligned_cols=13 Identities=46% Similarity=0.803 Sum_probs=10.5
Q ss_pred eeeeEeeeccCCC
Q psy8 38 YGLFLDGARWDRT 50 (50)
Q Consensus 38 ~GLfLeGA~Wd~~ 50 (50)
.|++|||..||.+
T Consensus 38 ~~~~lEG~~~D~~ 50 (319)
T d2dg1a1 38 KGLQLEGLNFDRQ 50 (319)
T ss_dssp SCCCEEEEEECTT
T ss_pred CCcCcEeCEECCC
Confidence 4789999999863
No 12
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.82 E-value=11 Score=18.47 Aligned_cols=11 Identities=18% Similarity=0.458 Sum_probs=8.8
Q ss_pred ChhhhhhcCCC
Q psy8 1 MQNYARKMTIP 11 (50)
Q Consensus 1 lQ~~ARk~~ip 11 (50)
||+|+.++++.
T Consensus 19 LqE~~Qk~~~~ 29 (90)
T d1qu6a1 19 LNTYRQKQGVV 29 (90)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHhCCC
Confidence 68999988764
No 13
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.61 E-value=19 Score=16.71 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=11.2
Q ss_pred ChhhhhhcCCCceE
Q psy8 1 MQNYARKMTIPIDH 14 (50)
Q Consensus 1 lQ~~ARk~~ipiD~ 14 (50)
||+++.++++++-.
T Consensus 15 LqE~~q~~~~~~P~ 28 (76)
T d2cpna1 15 LQELVVQKGWRLPE 28 (76)
T ss_dssp HHHHHHHHTCCCCE
T ss_pred HHHHHHHcCCCCCE
Confidence 69999999888644
No 14
>d1k28a1 b.40.8.1 (A:6-129) Tail-associated lysozyme gp5, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}
Probab=33.57 E-value=6 Score=21.07 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=25.1
Q ss_pred CCCceEEEeEEEEEecc--------CCCCCCCCeEEEeeeeEeee
Q psy8 9 TIPIDHLTFDFVVLQIN--------KSEAPPEDGVYCYGLFLDGA 45 (50)
Q Consensus 9 ~ipiD~l~~~~~v~~~~--------~~~~~p~~GvyI~GLfLeGA 45 (50)
.+|-+.|-|-.-++... ........|..|.|+||+|.
T Consensus 41 ~lp~~dLPWA~v~~p~t~~~~~g~g~~~~~l~~G~~V~GfFlDgd 85 (124)
T d1k28a1 41 GIPTEKLPWMSVIQPITSAAMSGIGGSVTGPVEGTRVYGHFLDKW 85 (124)
T ss_dssp CCCGGGSCEEEECCCTTCCCBTTBSSCSCCCCTTCEEEEEESSSS
T ss_pred cCCcccCcceeEeccccccccccccccccceeCCeEEEEEEecCC
Confidence 47777787766555431 11234578999999999983
No 15
>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.06 E-value=11 Score=18.48 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=10.2
Q ss_pred EeeeeEeeeccCC
Q psy8 37 CYGLFLDGARWDR 49 (50)
Q Consensus 37 I~GLfLeGA~Wd~ 49 (50)
+.|+.+.|.+|+.
T Consensus 34 ~~~vt~~Glky~L 46 (85)
T d1ig3a1 34 CNQVTTTGLKWNL 46 (85)
T ss_dssp EEEEEEESBSSCC
T ss_pred ceeEEEeCCEEeC
Confidence 5678888889975
No 16
>d2dbsa1 d.374.1.1 (A:7-86) Hypothetical protein TTHC002 {Thermus thermophilus [TaxId: 274]}
Probab=29.62 E-value=10 Score=18.69 Aligned_cols=17 Identities=47% Similarity=0.870 Sum_probs=12.2
Q ss_pred CCCCCe-EEEeeeeEeee
Q psy8 29 APPEDG-VYCYGLFLDGA 45 (50)
Q Consensus 29 ~~p~~G-vyI~GLfLeGA 45 (50)
.|..+| -.||.|||+|-
T Consensus 49 apnpegwp~vyalfl~gr 66 (80)
T d2dbsa1 49 APNPEGWPSVYALFLQGR 66 (80)
T ss_dssp CCCSSSSCEEEEEEETTE
T ss_pred CCCCcccHHHHHHHhCCC
Confidence 344555 58999999983
No 17
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=29.18 E-value=5.1 Score=17.66 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=11.0
Q ss_pred hhhhhcCCCceEEE
Q psy8 3 NYARKMTIPIDHLT 16 (50)
Q Consensus 3 ~~ARk~~ipiD~l~ 16 (50)
..|+++++++++|.
T Consensus 14 ~IA~~y~v~~~~i~ 27 (48)
T d1y7ma2 14 SIAADFRISTAALL 27 (48)
T ss_dssp HHHHHTTSCCCCCC
T ss_pred HHHHHhCCCHHHHH
Confidence 56899999988763
No 18
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019 {Anabaena variabilis [TaxId: 1172]}
Probab=29.15 E-value=18 Score=19.39 Aligned_cols=12 Identities=17% Similarity=0.528 Sum_probs=8.3
Q ss_pred ChhhhhhcCCCc
Q psy8 1 MQNYARKMTIPI 12 (50)
Q Consensus 1 lQ~~ARk~~ipi 12 (50)
|+.+.++++++.
T Consensus 61 Lrs~~~~~~~~~ 72 (131)
T d2q22a1 61 MKTYSHALGYEV 72 (131)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHhCCCc
Confidence 456777887764
No 19
>d1ekra_ d.58.21.1 (A:) Molybdenum cofactor biosynthesis protein C, MoaC {Escherichia coli [TaxId: 562]}
Probab=28.89 E-value=18 Score=19.76 Aligned_cols=16 Identities=0% Similarity=0.100 Sum_probs=13.4
Q ss_pred cCCCceEEEeEEEEEe
Q psy8 8 MTIPIDHLTFDFVVLQ 23 (50)
Q Consensus 8 ~~ipiD~l~~~~~v~~ 23 (50)
|.+||+.+.++|++..
T Consensus 67 Hpi~l~~v~v~~~~~~ 82 (146)
T d1ekra_ 67 HPLMLSKVEVNLQAEP 82 (146)
T ss_dssp CCCCCSEEEEEEEEEG
T ss_pred cccccceEEEEEEEcC
Confidence 5799999999998754
No 20
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.50 E-value=9.7 Score=20.08 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=9.4
Q ss_pred ChhhhhhcCCCce
Q psy8 1 MQNYARKMTIPID 13 (50)
Q Consensus 1 lQ~~ARk~~ipiD 13 (50)
||+|+.++++++-
T Consensus 32 LqE~~Qk~~~~~P 44 (128)
T d1whna_ 32 LLEWCRREKLPQP 44 (128)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCCC
Confidence 6999988765543
No 21
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.32 E-value=29 Score=15.85 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=8.8
Q ss_pred ChhhhhhcCCC
Q psy8 1 MQNYARKMTIP 11 (50)
Q Consensus 1 lQ~~ARk~~ip 11 (50)
||++|++++++
T Consensus 8 L~E~~qk~~~~ 18 (73)
T d2dixa1 8 LHEYGMKTKNI 18 (73)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHhCCCC
Confidence 68999988764
No 22
>d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.31 E-value=12 Score=19.02 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.6
Q ss_pred CCCeEEEeeeeE
Q psy8 31 PEDGVYCYGLFL 42 (50)
Q Consensus 31 p~~GvyI~GLfL 42 (50)
-..|.+|+|+|.
T Consensus 9 q~~Gt~V~GvF~ 20 (88)
T d2oq0a1 9 QASGNIVYGVFM 20 (88)
T ss_dssp SCTTCEEEEEEE
T ss_pred CCCccEEeEEEE
Confidence 346889999996
No 23
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.84 E-value=36 Score=16.06 Aligned_cols=14 Identities=7% Similarity=0.180 Sum_probs=9.8
Q ss_pred ChhhhhhcCCCceE
Q psy8 1 MQNYARKMTIPIDH 14 (50)
Q Consensus 1 lQ~~ARk~~ipiD~ 14 (50)
||+++.+...++..
T Consensus 15 LqE~~Qk~~~~~p~ 28 (85)
T d1x47a1 15 LHEYMQRVLKVRPV 28 (85)
T ss_dssp HHHHHHHHTCSCCE
T ss_pred HHHHHHHhCCCCCC
Confidence 68999877655543
No 24
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.14 E-value=16 Score=17.02 Aligned_cols=18 Identities=28% Similarity=0.711 Sum_probs=14.6
Q ss_pred hhhhhcCCCceEEEeEEE
Q psy8 3 NYARKMTIPIDHLTFDFV 20 (50)
Q Consensus 3 ~~ARk~~ipiD~l~~~~~ 20 (50)
.||.+.++|..++.|-|.
T Consensus 31 ~y~~~~~~~~~~~~f~fd 48 (77)
T d2uyzb1 31 SYCQRQGVPMNSLRFLFE 48 (77)
T ss_dssp HHHHHHTCCGGGEEEEET
T ss_pred HHHHHhCCChhHEEEEEC
Confidence 578888999999887764
No 25
>d2opla1 d.227.1.1 (A:4-185) Hypothetical protein GSU2788 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=22.23 E-value=29 Score=18.56 Aligned_cols=21 Identities=10% Similarity=-0.081 Sum_probs=17.4
Q ss_pred hhhhhhcCCCceEEEeEEEEE
Q psy8 2 QNYARKMTIPIDHLTFDFVVL 22 (50)
Q Consensus 2 Q~~ARk~~ipiD~l~~~~~v~ 22 (50)
+.+|.+.+|+|+++..+.+..
T Consensus 98 ~~~A~~~gi~l~~l~v~v~~~ 118 (182)
T d2opla1 98 VAHAAARGIALRGVKSRYEGD 118 (182)
T ss_dssp HHHHHHTTCCCSEEEEEEEEE
T ss_pred HHHHHHCCCCcceEEEEEEEE
Confidence 457889999999999887765
No 26
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2 {Escherichia coli [TaxId: 562]}
Probab=22.12 E-value=18 Score=20.93 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=12.5
Q ss_pred hhcCCCceEEEeEEEE
Q psy8 6 RKMTIPIDHLTFDFVV 21 (50)
Q Consensus 6 Rk~~ipiD~l~~~~~v 21 (50)
|++++|+|.+.++..-
T Consensus 47 r~~~iP~d~i~iD~~w 62 (338)
T d2f2ha4 47 AERNLPLHVFHFDCFW 62 (338)
T ss_dssp HHTTCCCCEEEECGGG
T ss_pred HHcCCCcceEEEcCch
Confidence 6779999999887443
No 27
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.93 E-value=44 Score=15.97 Aligned_cols=14 Identities=0% Similarity=-0.102 Sum_probs=11.1
Q ss_pred ChhhhhhcCCCceE
Q psy8 1 MQNYARKMTIPIDH 14 (50)
Q Consensus 1 lQ~~ARk~~ipiD~ 14 (50)
||+++.++++++-.
T Consensus 12 LqE~~Q~~~~~~P~ 25 (89)
T d1uhza_ 12 LAQIQQARKEKEPD 25 (89)
T ss_dssp HHHHHHHTTSCCCE
T ss_pred HHHHHHhcCCCCCE
Confidence 68999998887644
No 28
>d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga maritima [TaxId: 2336]}
Probab=21.63 E-value=11 Score=18.93 Aligned_cols=31 Identities=13% Similarity=0.404 Sum_probs=17.7
Q ss_pred hcCCCceEEEeEEEEEeccCCCCCCCCeEEEeee
Q psy8 7 KMTIPIDHLTFDFVVLQINKSEAPPEDGVYCYGL 40 (50)
Q Consensus 7 k~~ipiD~l~~~~~v~~~~~~~~~p~~GvyI~GL 40 (50)
.+.+|++.+. ++.+...++..|...-++.|+
T Consensus 14 ~yaip~~~V~---ei~~~~~i~~vp~~~~~~~Gv 44 (139)
T d2ch4w1 14 ALAFDVDNIE---MVIEKSDITPVPKSRHFVEGV 44 (139)
T ss_dssp CEEECTTTEE---EEEECCCCCCCSSCCTTEEEE
T ss_pred EEEEEHHHeE---EecCcccceEcCCCCccceee
Confidence 4567777765 555544444445444466665
No 29
>d1wv3a2 b.26.1.4 (A:79-186) Protein EssC {Staphylococcus aureus [TaxId: 1280]}
Probab=21.13 E-value=22 Score=18.07 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.1
Q ss_pred CCCeEEEeeeeEee
Q psy8 31 PEDGVYCYGLFLDG 44 (50)
Q Consensus 31 p~~GvyI~GLfLeG 44 (50)
-.+-+||.|++||-
T Consensus 75 igdhiyvegiwlev 88 (108)
T d1wv3a2 75 IGDHIYVEGIWLEV 88 (108)
T ss_dssp TTCEEEETTEEEEE
T ss_pred ecceEEEEEEEEEE
Confidence 45778999999983
No 30
>d1eyqa_ d.36.1.1 (A:) Chalcone isomerase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=20.66 E-value=25 Score=19.44 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=8.8
Q ss_pred eEEEeeeeEee
Q psy8 34 GVYCYGLFLDG 44 (50)
Q Consensus 34 GvyI~GLfLeG 44 (50)
-||.-||||+-
T Consensus 43 kvYa~GlYl~~ 53 (212)
T d1eyqa_ 43 KFTAIGVYLED 53 (212)
T ss_dssp EEEEEEEEEET
T ss_pred EEEEEEEEccc
Confidence 46899999973
Done!