RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8
         (50 letters)



>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein
           motor.  This family represents the C-terminal region of
           dynein heavy chain. The chain also contains ATPase
           activity and microtubule binding ability and acts as a
           motor for the movement of organelles and vesicles along
           microtubules. Dynein is also involved in cilia and
           flagella movement. The dynein subunit consists of at
           least two heavy chains and a number of intermediate and
           light chains. The 380 kDa motor unit of dynein belongs
           to the AAA class of chaperone-like ATPases. The core of
           the 380 kDa motor unit contains a concatenated chain of
           six AAA modules, of which four correspond to the ATP
           binding sites with P-loop signatures described
           previously, and two are modules in which the P loop has
           been lost in evolution. This C-terminal domain carries
           the D6 region of the dynein motor where the P-loop has
           been lost in evolution but the general structure of a
           potential ATP binding site appears to be retained.
          Length = 706

 Score = 67.3 bits (165), Expect = 2e-15
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 1   MQNYARKMTIPIDHLTFDFVVLQINKSE--APPEDGVYCYGLFLDGARWDRT 50
           MQ+ ARK   P+D L     V +  K E  + P DG Y +GLFL+GARWD  
Sbjct: 580 MQSVARKNKWPLDKLCLQTDVTKKEKEEFDSAPRDGFYVHGLFLEGARWDGQ 631


>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
          Reviewed.
          Length = 486

 Score = 24.4 bits (54), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 7  KMTIPIDHLTFDFVVLQINKSEAPPED 33
           + I  + LTFD V+L    SE  P D
Sbjct: 1  MLRIAKEALTFDDVLLVPAHSEVLPND 27


>gnl|CDD|215555 PLN03063, PLN03063, alpha,alpha-trehalose-phosphate synthase
           (UDP-forming); Provisional.
          Length = 797

 Score = 24.4 bits (53), Expect = 2.6
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 12  IDHLTFDFVVLQINKSEAPPEDGVYCYGLFLD 43
           I  +  + V    NKS   P D V+C G FL+
Sbjct: 683 IGRILGEIVH---NKSMTTPIDFVFCSGYFLE 711


>gnl|CDD|203928 pfam08390, TRAM1, TRAM1-like protein.  This family comprises
          sequences that are similar to human TRAM1. This is a
          transmembrane protein of the endoplasmic reticulum,
          thought to be involved in the membrane transfer of
          secretory proteins. The region featured in this family
          is found N-terminal to the longevity-assurance protein
          region (pfam03798).
          Length = 65

 Score = 23.7 bits (52), Expect = 3.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 16 TFDFVVLQINKSEAPPEDGVYCYG 39
          T  F+ L  N +  PP  G+Y  G
Sbjct: 2  TSKFIFLSYNVTTTPPGTGLYGKG 25


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,611,858
Number of extensions: 158326
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 4
Length of query: 50
Length of database: 10,937,602
Length adjustment: 23
Effective length of query: 27
Effective length of database: 9,917,460
Effective search space: 267771420
Effective search space used: 267771420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)