RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8
         (50 letters)



>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding
          protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 190

 Score = 22.4 bits (48), Expect = 3.1
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 3  NYARKMTIPIDHLTFDFVVLQINKSEAPPEDGVYCYGLFLD 43
          +Y  K  IP+++   + +  ++ +  APP   V    L ++
Sbjct: 48 SYPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIE 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 207,744
Number of extensions: 6475
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 50
Length of database: 2,407,596
Length adjustment: 22
Effective length of query: 28
Effective length of database: 2,105,536
Effective search space: 58955008
Effective search space used: 58955008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)