BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy800
(204 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242023983|ref|XP_002432410.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517833|gb|EEB19672.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 91
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/83 (97%), Positives = 81/83 (97%), Gaps = 1/83 (1%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
MTA SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTEYES
Sbjct: 1 MTA-SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYES 59
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TPEGRRITKLDQILLNGNNITML
Sbjct: 60 TPEGRRITKLDQILLNGNNITML 82
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/57 (94%), Positives = 55/57 (96%), Gaps = 1/57 (1%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
MTA SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 1 MTA-SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTE 56
>gi|193582383|ref|XP_001951255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Acyrthosiphon pisum]
Length = 91
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 77/81 (95%), Positives = 79/81 (97%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A SVATNPSTLLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNMLLEDVTEYESTP
Sbjct: 2 ATSVATNPSTLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMLLEDVTEYESTP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRR+TKLDQILLNGNNITML
Sbjct: 62 EGRRVTKLDQILLNGNNITML 82
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/55 (92%), Positives = 53/55 (96%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A SVATNPSTLLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 2 ATSVATNPSTLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMLLEDVTE 56
>gi|156555736|ref|XP_001602011.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Nasonia
vitripennis]
Length = 93
Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/82 (90%), Positives = 78/82 (95%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
+A SV TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLL+DVTE E+T
Sbjct: 3 SASSVTTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLKGFDDFVNMLLDDVTESEAT 62
Query: 165 PEGRRITKLDQILLNGNNITML 186
PEGRR+TKLDQILLNGNNITML
Sbjct: 63 PEGRRVTKLDQILLNGNNITML 84
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/58 (86%), Positives = 53/58 (91%)
Query: 2 TAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
+A SV TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLL+DVT+
Sbjct: 3 SASSVTTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLKGFDDFVNMLLDDVTESE 60
>gi|307178103|gb|EFN66930.1| U6 snRNA-associated Sm-like protein LSm5 [Camponotus floridanus]
Length = 91
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/81 (91%), Positives = 78/81 (96%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTE E+TP
Sbjct: 2 ATSVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRR+TKLDQILLNG+NITML
Sbjct: 62 EGRRVTKLDQILLNGSNITML 82
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/57 (89%), Positives = 53/57 (92%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
A SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 2 ATSVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESE 58
>gi|322791094|gb|EFZ15676.1| hypothetical protein SINV_04240 [Solenopsis invicta]
Length = 83
Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/81 (90%), Positives = 78/81 (96%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTE E+TP
Sbjct: 2 ATSVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRR+TKLDQILLNG+NITM+
Sbjct: 62 EGRRVTKLDQILLNGSNITMV 82
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/57 (89%), Positives = 53/57 (92%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
A SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 2 ATSVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESE 58
>gi|332026604|gb|EGI66713.1| U6 snRNA-associated Sm-like protein LSm5 [Acromyrmex echinatior]
Length = 91
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/83 (91%), Positives = 80/83 (96%), Gaps = 1/83 (1%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
MTA SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTE E+
Sbjct: 1 MTA-SVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEA 59
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TPEGRR+TKLDQILLNG+NITML
Sbjct: 60 TPEGRRVTKLDQILLNGSNITML 82
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/59 (89%), Positives = 55/59 (93%), Gaps = 1/59 (1%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
MTA SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 1 MTA-SVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESE 58
>gi|307197393|gb|EFN78665.1| U6 snRNA-associated Sm-like protein LSm5 [Harpegnathos saltator]
Length = 91
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 77/79 (97%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTE E+TPEG
Sbjct: 4 SVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPEG 63
Query: 168 RRITKLDQILLNGNNITML 186
RR+TKLDQILLNG+NITML
Sbjct: 64 RRVTKLDQILLNGSNITML 82
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 4 SVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESE 58
>gi|170055785|ref|XP_001863736.1| Lsm5 protein [Culex quinquefasciatus]
gi|167875611|gb|EDS38994.1| Lsm5 protein [Culex quinquefasciatus]
Length = 92
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 74/81 (91%), Positives = 76/81 (93%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A S +N STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTEYE+TP
Sbjct: 2 AQSTVSNQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 52/59 (88%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
A S +N STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+ ++
Sbjct: 2 AQSTVSNQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENT 60
>gi|110760718|ref|XP_001120607.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Apis
mellifera]
gi|340715932|ref|XP_003396461.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Bombus
terrestris]
gi|350396810|ref|XP_003484674.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Bombus
impatiens]
gi|380019757|ref|XP_003693769.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Apis
florea]
gi|383866113|ref|XP_003708516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Megachile
rotundata]
Length = 91
Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/79 (92%), Positives = 77/79 (97%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTE E+TPEG
Sbjct: 4 SVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTESEATPEG 63
Query: 168 RRITKLDQILLNGNNITML 186
RR+TKLDQILLNG+NITML
Sbjct: 64 RRVTKLDQILLNGSNITML 82
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 52/55 (94%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
SV+TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 4 SVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTESE 58
>gi|290561451|gb|ADD38126.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus salmonis]
Length = 95
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/83 (86%), Positives = 79/83 (95%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M++ SVA NPST+LPLELVDK IGSRIHIIMKNDKEIVGTL GFDDFVNM+LEDVTEYES
Sbjct: 1 MSSISVAPNPSTILPLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTEYES 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TPEGRR++KLDQILLNGN+ITML
Sbjct: 61 TPEGRRVSKLDQILLNGNHITML 83
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 53/57 (92%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M++ SVA NPST+LPLELVDK IGSRIHIIMKNDKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 1 MSSISVAPNPSTILPLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTE 57
>gi|290561032|gb|ADD37918.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus salmonis]
Length = 95
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/83 (86%), Positives = 79/83 (95%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M++ SVA NPST+LPLELVDK IGSRIHIIMKNDKEIVGTL GFDDFVNM+LEDVTEYES
Sbjct: 1 MSSISVAPNPSTILPLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTEYES 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TPEGRR++KLDQILLNGN+ITML
Sbjct: 61 TPEGRRVSKLDQILLNGNHITML 83
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 53/57 (92%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M++ SVA NPST+LPLELVDK IGSRIHIIMKNDKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 1 MSSISVAPNPSTILPLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTE 57
>gi|158296145|ref|XP_316632.4| AGAP006604-PA [Anopheles gambiae str. PEST]
gi|157016373|gb|EAA10979.4| AGAP006604-PA [Anopheles gambiae str. PEST]
Length = 94
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/81 (90%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + N STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTEYE+TP
Sbjct: 2 AQTTVANQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 51/59 (86%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
A + N STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+ ++
Sbjct: 2 AQTTVANQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENT 60
>gi|261245080|ref|NP_001140132.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221220780|gb|ACM09051.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221222120|gb|ACM09721.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|225715330|gb|ACO13511.1| U6 snRNA-associated Sm-like protein LSm5 [Esox lucius]
Length = 91
Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/81 (88%), Positives = 76/81 (93%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + ATNPS LLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 51/55 (92%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + ATNPS LLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|154426284|ref|NP_001093908.1| U6 snRNA-associated Sm-like protein LSm5 [Danio rerio]
gi|152012711|gb|AAI50415.1| Zgc:171959 protein [Danio rerio]
Length = 91
Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/81 (88%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A ATNPS LLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AAITATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A ATNPS LLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AAITATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|157103848|ref|XP_001648155.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108869330|gb|EAT33555.1| AAEL014169-PA [Aedes aegypti]
Length = 92
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/81 (88%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + +N STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTEYE+T
Sbjct: 2 AQTTVSNQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTS 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 52/59 (88%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
A + +N STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+ ++
Sbjct: 2 AQTTVSNQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENT 60
>gi|346470761|gb|AEO35225.1| hypothetical protein [Amblyomma maculatum]
Length = 90
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/77 (89%), Positives = 75/77 (97%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
A NPS+LLPLEL+DKCIGS+IHIIMK+DKEIVGTL GFDDFVNM+LEDVTEYESTPEGRR
Sbjct: 5 AVNPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRR 64
Query: 170 ITKLDQILLNGNNITML 186
ITKLDQILLNGNNITM+
Sbjct: 65 ITKLDQILLNGNNITMM 81
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 49/51 (96%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A NPS+LLPLEL+DKCIGS+IHIIMK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 5 AVNPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>gi|427785997|gb|JAA58450.1| Putative u6 snrna-associated sm-like protein [Rhipicephalus
pulchellus]
Length = 90
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/77 (89%), Positives = 75/77 (97%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
A NPS+LLPLEL+DKCIGS+IHIIMK+DKEIVGTL GFDDFVNM+LEDVTEYESTPEGRR
Sbjct: 5 AVNPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRR 64
Query: 170 ITKLDQILLNGNNITML 186
ITKLDQILLNGNNITM+
Sbjct: 65 ITKLDQILLNGNNITMM 81
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 49/51 (96%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A NPS+LLPLEL+DKCIGS+IHIIMK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 5 AVNPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>gi|350539912|ref|NP_001232310.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia guttata]
gi|197129593|gb|ACH46091.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia guttata]
gi|197129594|gb|ACH46092.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia guttata]
gi|197129595|gb|ACH46093.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia guttata]
gi|197129831|gb|ACH46329.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia guttata]
gi|197129908|gb|ACH46406.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia guttata]
Length = 91
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A S +NPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AASAVSNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A S +NPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AASAVSNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|91078636|ref|XP_968589.1| PREDICTED: similar to Lsm5 protein [Tribolium castaneum]
gi|270004060|gb|EFA00508.1| hypothetical protein TcasGA2_TC003372 [Tribolium castaneum]
Length = 89
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 75/79 (94%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
S+ + STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTEYE+TPEG
Sbjct: 3 SMPVSSSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYETTPEG 62
Query: 168 RRITKLDQILLNGNNITML 186
RRITKLDQILLNGNNITML
Sbjct: 63 RRITKLDQILLNGNNITML 81
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/53 (86%), Positives = 49/53 (92%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S+ + STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 3 SMPVSSSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTE 55
>gi|326922224|ref|XP_003207351.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Meleagris
gallopavo]
gi|363730150|ref|XP_418849.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Gallus gallus]
Length = 91
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 76/81 (93%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + +TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANASTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 51/55 (92%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + +TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANASTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|317420150|emb|CBN82186.1| U6 snRNA-associated Sm-like protein LSm5 [Dicentrarchus labrax]
Length = 91
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/81 (87%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + ATNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AATPATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + ATNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AATPATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|389610013|dbj|BAM18618.1| small nuclear ribonucleoprotein, core [Papilio xuthus]
Length = 95
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/75 (92%), Positives = 73/75 (97%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
NP+TLLPLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVTEYESTPEGR+IT
Sbjct: 7 NPNTLLPLELVDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT 66
Query: 172 KLDQILLNGNNITML 186
KLDQILLNGNNI ML
Sbjct: 67 KLDQILLNGNNIAML 81
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/49 (89%), Positives = 48/49 (97%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
NP+TLLPLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVT+
Sbjct: 7 NPNTLLPLELVDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 55
>gi|126336758|ref|XP_001371876.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Monodelphis domestica]
Length = 166
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AVNATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITMLGLHT 190
EGRRITKLDQILLNGNNITM+ L +
Sbjct: 62 EGRRITKLDQILLNGNNITMMALWS 86
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AVNATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|387915912|gb|AFK11565.1| U6 snRNA-associated Sm-like protein LSm5 [Callorhinchus milii]
Length = 90
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
TNPS LLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNM+LEDVTE+E TPEGRR
Sbjct: 5 VTNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRR 64
Query: 170 ITKLDQILLNGNNITML 186
ITKLDQILLNGNNITML
Sbjct: 65 ITKLDQILLNGNNITML 81
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 48/51 (94%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
TNPS LLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 5 VTNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTE 55
>gi|6912488|ref|NP_036454.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Homo sapiens]
gi|13384942|ref|NP_079796.1| U6 snRNA-associated Sm-like protein LSm5 [Mus musculus]
gi|114053307|ref|NP_001040018.1| U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|157822947|ref|NP_001100759.1| U6 snRNA-associated Sm-like protein LSm5 [Rattus norvegicus]
gi|197101673|ref|NP_001126628.1| U6 snRNA-associated Sm-like protein LSm5 [Pongo abelii]
gi|383873354|ref|NP_001244745.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|55628382|ref|XP_519030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3 [Pan
troglodytes]
gi|73976577|ref|XP_854477.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Canis lupus
familiaris]
gi|149705702|ref|XP_001500867.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Equus
caballus]
gi|291394638|ref|XP_002713789.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296209016|ref|XP_002751358.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Callithrix jacchus]
gi|301772952|ref|XP_002921890.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Ailuropoda melanoleuca]
gi|332242762|ref|XP_003270553.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Nomascus leucogenys]
gi|335305486|ref|XP_003360223.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Sus
scrofa]
gi|344270397|ref|XP_003407031.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Loxodonta
africana]
gi|348568734|ref|XP_003470153.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cavia
porcellus]
gi|395831025|ref|XP_003788612.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Otolemur
garnettii]
gi|397527112|ref|XP_003833447.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Pan
paniscus]
gi|402863784|ref|XP_003896179.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 1
[Papio anubis]
gi|403278350|ref|XP_003930776.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Saimiri
boliviensis boliviensis]
gi|407262510|ref|XP_003946397.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Mus
musculus]
gi|410952602|ref|XP_003982968.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Felis catus]
gi|426227726|ref|XP_004007967.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Ovis aries]
gi|426355879|ref|XP_004045331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 1
[Gorilla gorilla gorilla]
gi|426355881|ref|XP_004045332.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 2
[Gorilla gorilla gorilla]
gi|10720081|sp|Q9Y4Y9.3|LSM5_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|52783752|sp|P62322.2|LSM5_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|75054789|sp|Q5R628.3|LSM5_PONAB RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|116256439|sp|Q2HJH0.3|LSM5_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|5919151|gb|AAD56229.1|AF182291_1 U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens]
gi|5262860|emb|CAB45868.1| Lsm5 protein [Homo sapiens]
gi|12844520|dbj|BAB26394.1| unnamed protein product [Mus musculus]
gi|12847199|dbj|BAB27475.1| unnamed protein product [Mus musculus]
gi|13543565|gb|AAH05938.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|38512042|gb|AAH61085.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|51105856|gb|EAL24440.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|55732167|emb|CAH92788.1| hypothetical protein [Pongo abelii]
gi|55930921|gb|AAH48459.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|88682880|gb|AAI05405.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Bos
taurus]
gi|119614397|gb|EAW93991.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
gi|124376122|gb|AAI32627.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|124376508|gb|AAI32629.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|148672763|gb|EDL04710.1| mCG13108, isoform CRA_a [Mus musculus]
gi|149033255|gb|EDL88056.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_c [Rattus norvegicus]
gi|208966684|dbj|BAG73356.1| LSM5 homolog, U6 small nuclear RNA associated [synthetic construct]
gi|296488471|tpg|DAA30584.1| TPA: U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|312153290|gb|ADQ33157.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|355560708|gb|EHH17394.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|380811262|gb|AFE77506.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca mulatta]
gi|383417167|gb|AFH31797.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca mulatta]
gi|384941550|gb|AFI34380.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca mulatta]
gi|410223678|gb|JAA09058.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410255044|gb|JAA15489.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410354065|gb|JAA43636.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395572|gb|JAA44840.1| Putative u6 snrna-associated sm-like protein [Desmodus rotundus]
gi|440911522|gb|ELR61182.1| U6 snRNA-associated Sm-like protein LSm5 [Bos grunniens mutus]
Length = 91
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|410909464|ref|XP_003968210.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Takifugu
rubripes]
gi|47225103|emb|CAF98730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 88
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
ATNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVTE+E TPEGRR
Sbjct: 3 ATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEVTPEGRR 62
Query: 170 ITKLDQILLNGNNITML 186
ITKLDQILLNGNNITML
Sbjct: 63 ITKLDQILLNGNNITML 79
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 48/51 (94%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ATNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 3 ATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTE 53
>gi|157107685|ref|XP_001649890.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108879502|gb|EAT43727.1| AAEL004848-PA [Aedes aegypti]
Length = 92
Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/81 (87%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + +N S LLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTEYE+T
Sbjct: 2 AQTTVSNQSALLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTS 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 51/59 (86%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
A + +N S LLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+ ++
Sbjct: 2 AQTTVSNQSALLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENT 60
>gi|442748493|gb|JAA66406.1| Putative u6 snrna-associated sm-like protein [Ixodes ricinus]
Length = 90
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/83 (85%), Positives = 78/83 (93%), Gaps = 2/83 (2%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M+ P V NPS+LLPLEL+DKCIGS+IHIIMK+DKEIVGTL GFDDFVNM+LEDVTEYES
Sbjct: 1 MSLPPV--NPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYES 58
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TPEGRRITKLDQILLNGNNITM+
Sbjct: 59 TPEGRRITKLDQILLNGNNITMM 81
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 52/57 (91%), Gaps = 2/57 (3%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M+ P V NPS+LLPLEL+DKCIGS+IHIIMK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 1 MSLPPV--NPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTE 55
>gi|213982795|ref|NP_001135569.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus (Silurana)
tropicalis]
gi|195539827|gb|AAI68072.1| Unknown (protein for MGC:185877) [Xenopus (Silurana) tropicalis]
Length = 91
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A +V NPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AATVTPNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A +V NPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AATVTPNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|348503608|ref|XP_003439356.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 1
[Oreochromis niloticus]
gi|348503610|ref|XP_003439357.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 2
[Oreochromis niloticus]
Length = 88
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
ATNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVTE+E TPEGRR
Sbjct: 3 ATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRR 62
Query: 170 ITKLDQILLNGNNITML 186
ITKLDQILLNGNNITML
Sbjct: 63 ITKLDQILLNGNNITML 79
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/51 (88%), Positives = 48/51 (94%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ATNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 3 ATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTE 53
>gi|432929710|ref|XP_004081239.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Oryzias
latipes]
Length = 91
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AATQGTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 49/55 (89%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AATQGTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|119614396|gb|EAW93990.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
Length = 85
Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 74/80 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITM 185
EGRRITKLDQILLNGNNITM
Sbjct: 62 EGRRITKLDQILLNGNNITM 81
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|332374080|gb|AEE62181.1| unknown [Dendroctonus ponderosae]
Length = 89
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/83 (87%), Positives = 78/83 (93%), Gaps = 2/83 (2%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M+A V++ STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVTEYE+
Sbjct: 1 MSAMPVSS--STLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYET 58
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TPEGRRIT+LDQILLNGNNITML
Sbjct: 59 TPEGRRITRLDQILLNGNNITML 81
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%), Gaps = 2/57 (3%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M+A V++ STLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNMLLEDVT+
Sbjct: 1 MSAMPVSS--STLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTE 55
>gi|229366148|gb|ACQ58054.1| U6 snRNA-associated Sm-like protein LSm5 [Anoplopoma fimbria]
Length = 91
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AATPTTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 49/55 (89%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AATPTTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|301630685|ref|XP_002944447.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Xenopus (Silurana) tropicalis]
Length = 81
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 74/80 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A +V NPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AATVTPNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITM 185
EGRRITKLDQILLNGNNITM
Sbjct: 62 EGRRITKLDQILLNGNNITM 81
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A +V NPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AATVTPNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|197129592|gb|ACH46090.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia guttata]
Length = 91
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/81 (85%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A S +NPS LLPLELVDKCIGSRIHI+MK+DK+IVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AASGVSNPSQLLPLELVDKCIGSRIHIVMKSDKQIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A S +NPS LLPLELVDKCIGSRIHI+MK+DK+IVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AASGVSNPSQLLPLELVDKCIGSRIHIVMKSDKQIVGTLLGFDDFVNMVLEDVTE 56
>gi|21358059|ref|NP_648022.1| CG6610, isoform A [Drosophila melanogaster]
gi|442630491|ref|NP_001261461.1| CG6610, isoform B [Drosophila melanogaster]
gi|442630493|ref|NP_001261462.1| CG6610, isoform C [Drosophila melanogaster]
gi|194867419|ref|XP_001972067.1| GG15317 [Drosophila erecta]
gi|195337817|ref|XP_002035522.1| GM14749 [Drosophila sechellia]
gi|195492179|ref|XP_002093879.1| GE21536 [Drosophila yakuba]
gi|195588132|ref|XP_002083812.1| GD13931 [Drosophila simulans]
gi|7295386|gb|AAF50703.1| CG6610, isoform A [Drosophila melanogaster]
gi|21064593|gb|AAM29526.1| RE60135p [Drosophila melanogaster]
gi|190653850|gb|EDV51093.1| GG15317 [Drosophila erecta]
gi|194128615|gb|EDW50658.1| GM14749 [Drosophila sechellia]
gi|194179980|gb|EDW93591.1| GE21536 [Drosophila yakuba]
gi|194195821|gb|EDX09397.1| GD13931 [Drosophila simulans]
gi|220950876|gb|ACL87981.1| CG6610-PA [synthetic construct]
gi|220959480|gb|ACL92283.1| CG6610-PA [synthetic construct]
gi|440215357|gb|AGB94156.1| CG6610, isoform B [Drosophila melanogaster]
gi|440215358|gb|AGB94157.1| CG6610, isoform C [Drosophila melanogaster]
Length = 91
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/83 (85%), Positives = 77/83 (92%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
MTA +N STL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVTEYE+
Sbjct: 1 MTAVPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TP+GRRITKLDQILLNGNNITML
Sbjct: 61 TPDGRRITKLDQILLNGNNITML 83
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 53/61 (86%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
MTA +N STL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVT+ +
Sbjct: 1 MTAVPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 61 S 61
+
Sbjct: 61 T 61
>gi|195011763|ref|XP_001983306.1| GH15826 [Drosophila grimshawi]
gi|195125111|ref|XP_002007026.1| GI12608 [Drosophila mojavensis]
gi|195374668|ref|XP_002046125.1| GJ12731 [Drosophila virilis]
gi|193896788|gb|EDV95654.1| GH15826 [Drosophila grimshawi]
gi|193918635|gb|EDW17502.1| GI12608 [Drosophila mojavensis]
gi|194153283|gb|EDW68467.1| GJ12731 [Drosophila virilis]
Length = 91
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/83 (85%), Positives = 76/83 (91%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
MTA N STL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVTEYE+
Sbjct: 1 MTAVPPPANISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TP+GRRITKLDQILLNGNNITML
Sbjct: 61 TPDGRRITKLDQILLNGNNITML 83
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
MTA N STL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVT+ +
Sbjct: 1 MTAVPPPANISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 61 S 61
+
Sbjct: 61 T 61
>gi|291226439|ref|XP_002733197.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 91
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDV E+E+TP
Sbjct: 2 ASTTGTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVVEFENTP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRR+TKL+QILLNGNNITML
Sbjct: 62 EGRRVTKLEQILLNGNNITML 82
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDV + ++
Sbjct: 2 ASTTGTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVVEFENT 60
>gi|449283162|gb|EMC89854.1| U6 snRNA-associated Sm-like protein LSm5, partial [Columba livia]
Length = 82
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/81 (83%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E P
Sbjct: 2 AATATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIPP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITM+
Sbjct: 62 EGRRITKLDQILLNGNNITMV 82
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AATATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|195427721|ref|XP_002061925.1| GK17260 [Drosophila willistoni]
gi|194158010|gb|EDW72911.1| GK17260 [Drosophila willistoni]
Length = 91
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/83 (84%), Positives = 76/83 (91%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
MTA N STL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVTEYE+
Sbjct: 1 MTAVPPPANISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TP+GRR+TKLDQILLNGNNITML
Sbjct: 61 TPDGRRVTKLDQILLNGNNITML 83
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
MTA N STL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVT+ +
Sbjct: 1 MTAVPPPANISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 61 S 61
+
Sbjct: 61 T 61
>gi|355691296|gb|EHH26481.1| hypothetical protein EGK_16467 [Macaca mulatta]
Length = 91
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/81 (83%), Positives = 73/81 (90%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A TNPS LLPLE VDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+L+DVTE+E TP
Sbjct: 2 AADATTNPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 48/55 (87%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A TNPS LLPLE VDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+L+DVT+
Sbjct: 2 AADATTNPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTE 56
>gi|125979619|ref|XP_001353842.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|194752281|ref|XP_001958451.1| GF23512 [Drosophila ananassae]
gi|195171277|ref|XP_002026433.1| GL15546 [Drosophila persimilis]
gi|54640826|gb|EAL29577.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|190625733|gb|EDV41257.1| GF23512 [Drosophila ananassae]
gi|194111339|gb|EDW33382.1| GL15546 [Drosophila persimilis]
Length = 91
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/83 (84%), Positives = 76/83 (91%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
MTA N +TL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVTEYE+
Sbjct: 1 MTAVPPPANIATLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TP+GRRITKLDQILLNGNNITML
Sbjct: 61 TPDGRRITKLDQILLNGNNITML 83
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 52/61 (85%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
MTA N +TL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVT+ +
Sbjct: 1 MTAVPPPANIATLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 61 S 61
+
Sbjct: 61 T 61
>gi|198425042|ref|XP_002126895.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm5
[Ciona intestinalis]
Length = 89
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/77 (88%), Positives = 73/77 (94%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
A NPS LLPLELVDKCIGS+IHIIMK++KEIVGTL GFDDFVNM+LEDVTEYEST EGRR
Sbjct: 4 AANPSQLLPLELVDKCIGSKIHIIMKSEKEIVGTLLGFDDFVNMVLEDVTEYESTSEGRR 63
Query: 170 ITKLDQILLNGNNITML 186
I+KLDQILLNGNNITML
Sbjct: 64 ISKLDQILLNGNNITML 80
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 48/51 (94%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A NPS LLPLELVDKCIGS+IHIIMK++KEIVGTL GFDDFVNM+LEDVT+
Sbjct: 4 AANPSQLLPLELVDKCIGSKIHIIMKSEKEIVGTLLGFDDFVNMVLEDVTE 54
>gi|147901169|ref|NP_001087187.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus laevis]
gi|51873770|gb|AAH78466.1| MGC85219 protein [Xenopus laevis]
Length = 91
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/81 (85%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A +V N S LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AATVPPNSSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 49/55 (89%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A +V N S LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AATVPPNSSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|260807635|ref|XP_002598614.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
gi|229283887|gb|EEN54626.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
Length = 87
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/78 (87%), Positives = 75/78 (96%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A+NPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E+T EGR
Sbjct: 1 MASNPSHLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFENTSEGR 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNITML
Sbjct: 61 RITKLDQILLNGNNITML 78
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 52/56 (92%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
+A+NPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+ ++
Sbjct: 1 MASNPSHLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFENT 56
>gi|109077185|ref|XP_001093268.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5 [Macaca
mulatta]
gi|355747728|gb|EHH52225.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca fascicularis]
gi|355749905|gb|EHH54243.1| hypothetical protein EGM_15034 [Macaca fascicularis]
Length = 91
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 72/81 (88%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A TNPS LLPLE VDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+L+DVTE+E TP
Sbjct: 2 AADATTNPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNN TML
Sbjct: 62 EGRRITKLDQILLNGNNTTML 82
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 48/55 (87%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A TNPS LLPLE VDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+L+DVT+
Sbjct: 2 AADATTNPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTE 56
>gi|321472276|gb|EFX83246.1| hypothetical protein DAPPUDRAFT_230679 [Daphnia pulex]
Length = 89
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/72 (93%), Positives = 71/72 (98%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
TLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNM+LEDV+E+ESTPEGRR+TKLD
Sbjct: 7 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVSEFESTPEGRRVTKLD 66
Query: 175 QILLNGNNITML 186
QILLNGNNITML
Sbjct: 67 QILLNGNNITML 78
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/46 (91%), Positives = 45/46 (97%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
TLLPLELVDKCIGSRIHIIMKNDKEIVGTL GFDDFVNM+LEDV++
Sbjct: 7 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVSE 52
>gi|402871503|ref|XP_003899701.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Papio
anubis]
Length = 91
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 72/81 (88%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A TNPS LL LE VDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+L+DVTE+E TP
Sbjct: 2 AADATTNPSQLLSLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 47/55 (85%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A TNPS LL LE VDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+L+DVT+
Sbjct: 2 AADATTNPSQLLSLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTE 56
>gi|225711126|gb|ACO11409.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/83 (80%), Positives = 75/83 (90%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M++ A NPST+LPLELVDK IGSRIHIIMK DKEIVGTL GFDDFVNM+LEDVTE+ES
Sbjct: 1 MSSLPPAPNPSTILPLELVDKAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFES 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
T EG+R++KLDQILLNGNNITML
Sbjct: 61 TSEGQRVSKLDQILLNGNNITML 83
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
M++ A NPST+LPLELVDK IGSRIHIIMK DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 1 MSSLPPAPNPSTILPLELVDKAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFES 60
Query: 61 S 61
+
Sbjct: 61 T 61
>gi|225710006|gb|ACO10849.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 75/83 (90%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M++ A NPST+LPLELVD+ IGSRIHIIMK DKEIVGTL GFDDFVNM+LEDVTE+ES
Sbjct: 1 MSSLPPAPNPSTILPLELVDRAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFES 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
T EG+R++KLDQILLNGNNITML
Sbjct: 61 TSEGQRVSKLDQILLNGNNITML 83
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
M++ A NPST+LPLELVD+ IGSRIHIIMK DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 1 MSSLPPAPNPSTILPLELVDRAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFES 60
Query: 61 S 61
+
Sbjct: 61 T 61
>gi|221118892|ref|XP_002154101.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Hydra
magnipapillata]
Length = 93
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/84 (78%), Positives = 75/84 (89%), Gaps = 1/84 (1%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
T + PS +NPS LLP EL+DKCIGS+IHIIMK D+EIVGT GFDDFVN++LEDVTE+E
Sbjct: 2 TFSNPS-TSNPSLLLPFELIDKCIGSKIHIIMKTDREIVGTFLGFDDFVNVVLEDVTEFE 60
Query: 163 STPEGRRITKLDQILLNGNNITML 186
+TPEGRRITKLDQILLNGNNITML
Sbjct: 61 NTPEGRRITKLDQILLNGNNITML 84
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 47/55 (85%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
+NPS LLP EL+DKCIGS+IHIIMK D+EIVGT GFDDFVN++LEDVT+ ++
Sbjct: 8 TSNPSLLLPFELIDKCIGSKIHIIMKTDREIVGTFLGFDDFVNVVLEDVTEFENT 62
>gi|296234717|ref|XP_002762581.1| PREDICTED: uncharacterized protein LOC100410554 [Callithrix
jacchus]
Length = 655
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/79 (78%), Positives = 70/79 (88%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
+ TNPS LLPLELV KCIGSRIHI++++DKEIVG L G DFVNM+LEDVTE+E +PEG
Sbjct: 569 NTTTNPSQLLPLELVGKCIGSRIHIVLESDKEIVGALLGLADFVNMVLEDVTEFEISPEG 628
Query: 168 RRITKLDQILLNGNNITML 186
RRITKLDQILLNGNNITML
Sbjct: 629 RRITKLDQILLNGNNITML 647
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/53 (71%), Positives = 45/53 (84%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ TNPS LLPLELV KCIGSRIHI++++DKEIVG L G DFVNM+LEDVT+
Sbjct: 569 NTTTNPSQLLPLELVGKCIGSRIHIVLESDKEIVGALLGLADFVNMVLEDVTE 621
>gi|268561698|ref|XP_002638393.1| C. briggsae CBR-LSM-5 protein [Caenorhabditis briggsae]
gi|341889312|gb|EGT45247.1| hypothetical protein CAEBREN_08263 [Caenorhabditis brenneri]
gi|341889389|gb|EGT45324.1| hypothetical protein CAEBREN_18101 [Caenorhabditis brenneri]
Length = 91
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV EYE+T
Sbjct: 2 ATSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTA 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EG+R+TKLD ILLNGN+ITML
Sbjct: 62 EGKRMTKLDTILLNGNHITML 82
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 52/59 (88%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
A S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV + ++
Sbjct: 2 ATSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENT 60
>gi|109502984|ref|XP_001054331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
gi|392333476|ref|XP_003752904.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
Length = 90
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/81 (81%), Positives = 72/81 (88%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TN S LLPLELV KCIGSRIHI+MK+DK+IVGT GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AVNATTNRSQLLPLELVAKCIGSRIHIVMKSDKDIVGTPLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/55 (74%), Positives = 47/55 (85%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TN S LLPLELV KCIGSRIHI+MK+DK+IVGT GFDDFVNM+LEDVT+
Sbjct: 2 AVNATTNRSQLLPLELVAKCIGSRIHIVMKSDKDIVGTPLGFDDFVNMVLEDVTE 56
>gi|324529784|gb|ADY49042.1| U6 snRNA-associated Sm-like protein LSm5 [Ascaris suum]
Length = 94
Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/81 (79%), Positives = 73/81 (90%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A S ATNPSTLLPLELVDKCIGSRI +IMK +KEIVGTL GFDD+VNM+LEDV EYE+T
Sbjct: 5 ASSTATNPSTLLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTV 64
Query: 166 EGRRITKLDQILLNGNNITML 186
+G+R+TKLD ILLNGN+ITML
Sbjct: 65 DGKRVTKLDTILLNGNHITML 85
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
A S ATNPSTLLPLELVDKCIGSRI +IMK +KEIVGTL GFDD+VNM+LEDV + ++
Sbjct: 5 ASSTATNPSTLLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENT 63
>gi|196001101|ref|XP_002110418.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190586369|gb|EDV26422.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 84
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/73 (84%), Positives = 70/73 (95%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKCIGSRIHIIMK+DKE+VGTL GFDDFVNM+LEDVTEYE+T +GRR+TKL
Sbjct: 4 SQLLPLELIDKCIGSRIHIIMKSDKEVVGTLLGFDDFVNMVLEDVTEYETTADGRRVTKL 63
Query: 174 DQILLNGNNITML 186
DQILLNGNNITM+
Sbjct: 64 DQILLNGNNITMM 76
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 45/47 (95%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKCIGSRIHIIMK+DKE+VGTL GFDDFVNM+LEDVT+
Sbjct: 4 SQLLPLELIDKCIGSRIHIIMKSDKEVVGTLLGFDDFVNMVLEDVTE 50
>gi|309241419|ref|XP_003115877.1| CRE-LSM-5 protein [Caenorhabditis remanei]
gi|308256412|gb|EFP00365.1| CRE-LSM-5 protein [Caenorhabditis remanei]
Length = 91
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
+ S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV EYE+T
Sbjct: 2 STSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTA 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EG+R+TKLD ILLNGN+ITML
Sbjct: 62 EGKRMTKLDTILLNGNHITML 82
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 52/59 (88%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
+ S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV + ++
Sbjct: 2 STSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENT 60
>gi|392341168|ref|XP_003754272.1| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
gi|392348953|ref|XP_002729703.2| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
Length = 94
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 74/84 (88%), Gaps = 3/84 (3%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEI---VGTLNGFDDFVNMLLEDVTEYE 162
A ++ TN S LLPLELVDKCIGSRI I+MK+DKEI VGTL GFDDFVNM+LEDVTE+E
Sbjct: 2 AANMTTNLSQLLPLELVDKCIGSRIPIVMKSDKEIKEIVGTLLGFDDFVNMVLEDVTEFE 61
Query: 163 STPEGRRITKLDQILLNGNNITML 186
TPEGRRITKLDQILLNGNNITML
Sbjct: 62 ITPEGRRITKLDQILLNGNNITML 85
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 49/58 (84%), Gaps = 3/58 (5%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKND---KEIVGTLNGFDDFVNMLLEDVTD 57
A ++ TN S LLPLELVDKCIGSRI I+MK+D KEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANMTTNLSQLLPLELVDKCIGSRIPIVMKSDKEIKEIVGTLLGFDDFVNMVLEDVTE 59
>gi|395517528|ref|XP_003762928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Sarcophilus harrisii]
Length = 140
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/73 (86%), Positives = 67/73 (91%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S P ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TPEGRRITKL
Sbjct: 59 SVSAPPELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 118
Query: 174 DQILLNGNNITML 186
DQILLNGNNITML
Sbjct: 119 DQILLNGNNITML 131
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/47 (80%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S P ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 59 SVSAPPELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 105
>gi|17560310|ref|NP_506870.1| Protein LSM-5 [Caenorhabditis elegans]
gi|3876465|emb|CAB03013.1| Protein LSM-5 [Caenorhabditis elegans]
Length = 91
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV EYE+T
Sbjct: 2 ATSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTA 61
Query: 166 EGRRITKLDQILLNGNNITML 186
+G+R+TKLD ILLNGN+ITML
Sbjct: 62 DGKRMTKLDTILLNGNHITML 82
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 52/59 (88%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
A S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV + ++
Sbjct: 2 ATSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENT 60
>gi|149025174|gb|EDL81541.1| rCG64141 [Rattus norvegicus]
Length = 94
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 74/84 (88%), Gaps = 3/84 (3%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIV---GTLNGFDDFVNMLLEDVTEYE 162
A ++ TN S LLPLELVDKCIGSRI I+MK+DKEIV GTL GFDDFVNM+LEDVTE+E
Sbjct: 2 AANMTTNLSQLLPLELVDKCIGSRIPIVMKSDKEIVEIVGTLLGFDDFVNMVLEDVTEFE 61
Query: 163 STPEGRRITKLDQILLNGNNITML 186
TPEGRRITKLDQILLNGNNITML
Sbjct: 62 ITPEGRRITKLDQILLNGNNITML 85
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 49/58 (84%), Gaps = 3/58 (5%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDK---EIVGTLNGFDDFVNMLLEDVTD 57
A ++ TN S LLPLELVDKCIGSRI I+MK+DK EIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANMTTNLSQLLPLELVDKCIGSRIPIVMKSDKEIVEIVGTLLGFDDFVNMVLEDVTE 59
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 70/73 (95%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S L+PLELVDKCIGSRIHIIM+NDKEIVGTL GFD+FVNM+LEDVTEYE+T +G++ITKL
Sbjct: 3 SQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 174 DQILLNGNNITML 186
+QILLNGNNITML
Sbjct: 63 EQILLNGNNITML 75
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 45/47 (95%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S L+PLELVDKCIGSRIHIIM+NDKEIVGTL GFD+FVNM+LEDVT+
Sbjct: 3 SQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTE 49
>gi|391338472|ref|XP_003743582.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Metaseiulus occidentalis]
Length = 83
Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 71/73 (97%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
STLLPLEL+DKCIGSRIHIIMKNDKE+VGTL GFDD+VNM+LEDVTEYE++ +GRR+TKL
Sbjct: 2 STLLPLELIDKCIGSRIHIIMKNDKELVGTLLGFDDYVNMVLEDVTEYENSSDGRRVTKL 61
Query: 174 DQILLNGNNITML 186
DQI+LNG+NITM+
Sbjct: 62 DQIILNGSNITMM 74
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/51 (82%), Positives = 48/51 (94%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
STLLPLEL+DKCIGSRIHIIMKNDKE+VGTL GFDD+VNM+LEDVT+ +S
Sbjct: 2 STLLPLELIDKCIGSRIHIIMKNDKELVGTLLGFDDYVNMVLEDVTEYENS 52
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 70/73 (95%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S L+PLELVDKCIGSRIHIIM+NDKEIVGTL GFD+FVNM+LEDVTEYE+T +G++ITKL
Sbjct: 3 SQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 174 DQILLNGNNITML 186
+QILLNGNNITML
Sbjct: 63 EQILLNGNNITML 75
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 45/47 (95%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S L+PLELVDKCIGSRIHIIM+NDKEIVGTL GFD+FVNM+LEDVT+
Sbjct: 3 SQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTE 49
>gi|354485537|ref|XP_003504940.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Cricetulus griseus]
Length = 140
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/67 (91%), Positives = 65/67 (97%)
Query: 120 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLN 179
ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TPEGRRITKLDQILLN
Sbjct: 65 ELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLN 124
Query: 180 GNNITML 186
GNNITML
Sbjct: 125 GNNITML 131
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 40/41 (97%)
Query: 17 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 65 ELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 105
>gi|339233484|ref|XP_003381859.1| putative LSM domain protein [Trichinella spiralis]
gi|339261308|ref|XP_003367972.1| putative LSM domain protein [Trichinella spiralis]
gi|316964809|gb|EFV49750.1| putative LSM domain protein [Trichinella spiralis]
gi|316979279|gb|EFV62087.1| putative LSM domain protein [Trichinella spiralis]
Length = 92
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/83 (71%), Positives = 72/83 (86%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M PS A NPSTLLPLEL+DKCIGS++ I+MK +KE+VGTL GFDD+VN++LEDV EYE+
Sbjct: 1 MATPSTAVNPSTLLPLELIDKCIGSKLWIVMKGNKELVGTLLGFDDYVNIVLEDVIEYET 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
T EG+RIT+LDQILLNG +I ML
Sbjct: 61 TTEGKRITRLDQILLNGTHIAML 83
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 49/57 (85%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M PS A NPSTLLPLEL+DKCIGS++ I+MK +KE+VGTL GFDD+VN++LEDV +
Sbjct: 1 MATPSTAVNPSTLLPLELIDKCIGSKLWIVMKGNKELVGTLLGFDDYVNIVLEDVIE 57
>gi|281343311|gb|EFB18895.1| hypothetical protein PANDA_010826 [Ailuropoda melanoleuca]
Length = 79
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/70 (88%), Positives = 67/70 (95%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
L +ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TPEGRRITKLDQI
Sbjct: 1 LNIELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQI 60
Query: 177 LLNGNNITML 186
LLNGNNITML
Sbjct: 61 LLNGNNITML 70
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 42/44 (95%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
L +ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 1 LNIELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 44
>gi|351699507|gb|EHB02426.1| U6 snRNA-associated Sm-like protein LSm5, partial [Heterocephalus
glaber]
Length = 82
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/71 (87%), Positives = 66/71 (92%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
L ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TPEGRRITKLDQ
Sbjct: 3 FLSTELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQ 62
Query: 176 ILLNGNNITML 186
ILLNGNNITML
Sbjct: 63 ILLNGNNITML 73
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
L ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 3 FLSTELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 47
>gi|255080076|ref|XP_002503618.1| predicted protein [Micromonas sp. RCC299]
gi|226518885|gb|ACO64876.1| predicted protein [Micromonas sp. RCC299]
Length = 88
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 68/78 (87%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+ATNPS LLP ELVDKC+GSRI +IMK +KE+VGTL GFD +VNM+LEDV EYE TPEGR
Sbjct: 1 MATNPSQLLPSELVDKCVGSRIWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEYEMTPEGR 60
Query: 169 RITKLDQILLNGNNITML 186
R TKLDQILLNGNNI +L
Sbjct: 61 RETKLDQILLNGNNIALL 78
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 45/52 (86%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ATNPS LLP ELVDKC+GSRI +IMK +KE+VGTL GFD +VNM+LEDV +
Sbjct: 1 MATNPSQLLPSELVDKCVGSRIWVIMKGEKEMVGTLRGFDVYVNMVLEDVIE 52
>gi|449468622|ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
gi|449522508|ref|XP_004168268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
Length = 87
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 69/78 (88%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+ATNPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNI +L
Sbjct: 61 RITKLDQILLNGNNIAIL 78
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 46/52 (88%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ATNPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 1 MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|355700152|gb|AES01357.1| LSM5-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 76
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/67 (91%), Positives = 65/67 (97%)
Query: 120 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLN 179
ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TPEGRRITKLDQILLN
Sbjct: 1 ELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLN 60
Query: 180 GNNITML 186
GNNITML
Sbjct: 61 GNNITML 67
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 40/41 (97%)
Query: 17 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 1 ELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 41
>gi|303271251|ref|XP_003054987.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462961|gb|EEH60239.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 88
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 69/78 (88%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+ATNPS LLP ELVD+C+GSRI +IMK +KE+VGTL GFD +VNM+LEDV EYE TPEG+
Sbjct: 1 MATNPSQLLPSELVDRCVGSRIWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEYEMTPEGK 60
Query: 169 RITKLDQILLNGNNITML 186
R+TKLDQILLNGNNI +L
Sbjct: 61 RVTKLDQILLNGNNIALL 78
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ATNPS LLP ELVD+C+GSRI +IMK +KE+VGTL GFD +VNM+LEDV +
Sbjct: 1 MATNPSQLLPSELVDRCVGSRIWVIMKGEKEMVGTLRGFDVYVNMVLEDVIE 52
>gi|388507376|gb|AFK41754.1| unknown [Lotus japonicus]
Length = 87
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 69/78 (88%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A+NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNI +L
Sbjct: 61 RITKLDQILLNGNNIAIL 78
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 46/52 (88%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A+NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 1 MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|356524941|ref|XP_003531086.1| PREDICTED: uncharacterized protein LOC100306359 [Glycine max]
gi|255628297|gb|ACU14493.1| unknown [Glycine max]
Length = 87
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 68/78 (87%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNI +L
Sbjct: 61 RITKLDQILLNGNNIAIL 78
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|313586491|gb|ADR71256.1| U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
Length = 87
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 68/78 (87%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNI +L
Sbjct: 61 RITKLDQILLNGNNIAIL 78
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|225433436|ref|XP_002285668.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Vitis vinifera]
gi|297741927|emb|CBI33362.3| unnamed protein product [Vitis vinifera]
Length = 87
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 69/78 (88%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
++TNPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNI +L
Sbjct: 61 RITKLDQILLNGNNIAIL 78
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 46/52 (88%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
++TNPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 1 MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|388498294|gb|AFK37213.1| unknown [Medicago truncatula]
Length = 87
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 68/78 (87%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNI +L
Sbjct: 61 RITKLDQILLNGNNIAIL 78
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|224059779|ref|XP_002299989.1| predicted protein [Populus trichocarpa]
gi|224103927|ref|XP_002313247.1| predicted protein [Populus trichocarpa]
gi|118484238|gb|ABK93999.1| unknown [Populus trichocarpa]
gi|222847247|gb|EEE84794.1| predicted protein [Populus trichocarpa]
gi|222849655|gb|EEE87202.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/76 (77%), Positives = 67/76 (88%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
TNPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGRRI
Sbjct: 4 TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRI 63
Query: 171 TKLDQILLNGNNITML 186
TKLDQILLNGNNI +L
Sbjct: 64 TKLDQILLNGNNIAIL 79
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 44/50 (88%)
Query: 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
TNPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 4 TNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 53
>gi|443685344|gb|ELT88979.1| hypothetical protein CAPTEDRAFT_188465 [Capitella teleta]
Length = 85
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 65/73 (89%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
ST ELVDKCIGS+IHI+MKNDKEIVGTL GFDDFVNM+LEDV EYE+T EGRR+T L
Sbjct: 4 STSSTRELVDKCIGSKIHIVMKNDKEIVGTLLGFDDFVNMVLEDVVEYETTAEGRRVTTL 63
Query: 174 DQILLNGNNITML 186
DQILLNGNNITML
Sbjct: 64 DQILLNGNNITML 76
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/47 (78%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ST ELVDKCIGS+IHI+MKNDKEIVGTL GFDDFVNM+LEDV +
Sbjct: 4 STSSTRELVDKCIGSKIHIVMKNDKEIVGTLLGFDDFVNMVLEDVVE 50
>gi|356512167|ref|XP_003524792.1| PREDICTED: uncharacterized protein LOC100527929 [Glycine max]
gi|255633598|gb|ACU17158.1| unknown [Glycine max]
Length = 87
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 67/78 (85%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD + NM+LEDVTEYE T EGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNI +L
Sbjct: 61 RITKLDQILLNGNNIAIL 78
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD + NM+LEDVT+
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTE 52
>gi|302771065|ref|XP_002968951.1| hypothetical protein SELMODRAFT_90525 [Selaginella moellendorffii]
gi|302816639|ref|XP_002989998.1| hypothetical protein SELMODRAFT_130618 [Selaginella moellendorffii]
gi|300142309|gb|EFJ09011.1| hypothetical protein SELMODRAFT_130618 [Selaginella moellendorffii]
gi|300163456|gb|EFJ30067.1| hypothetical protein SELMODRAFT_90525 [Selaginella moellendorffii]
Length = 85
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 69/78 (88%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE TP+G+
Sbjct: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPDGK 60
Query: 169 RITKLDQILLNGNNITML 186
RITKLDQILLNGNNI +L
Sbjct: 61 RITKLDQILLNGNNIAIL 78
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|297792081|ref|XP_002863925.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
gi|297309760|gb|EFH40184.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
Length = 88
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 68/78 (87%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A+NPS LLP EL+D+CIGS+I +IMK DKE+VG L GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
R+TKLDQILLNGNNI +L
Sbjct: 61 RVTKLDQILLNGNNIAIL 78
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 45/52 (86%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A+NPS LLP EL+D+CIGS+I +IMK DKE+VG L GFD +VNM+LEDVT+
Sbjct: 1 MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTE 52
>gi|413949490|gb|AFW82139.1| SAD1 [Zea mays]
Length = 137
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 66/75 (88%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGRRIT
Sbjct: 54 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRIT 113
Query: 172 KLDQILLNGNNITML 186
KLDQILLNGNNI +L
Sbjct: 114 KLDQILLNGNNIAIL 128
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 54 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 102
>gi|110739170|dbj|BAF01501.1| Sm-like protein [Arabidopsis thaliana]
Length = 88
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 67/78 (85%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A NPS LLP EL+D+CIGS+I +IMK DKE+VG L GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
R+TKLDQILLNGNNI +L
Sbjct: 61 RVTKLDQILLNGNNIAIL 78
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A NPS LLP EL+D+CIGS+I +IMK DKE+VG L GFD +VNM+LEDVT+
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTE 52
>gi|15239727|ref|NP_199698.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like protein-like [Arabidopsis thaliana]
gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis thaliana]
gi|106879147|gb|ABF82603.1| At5g48870 [Arabidopsis thaliana]
gi|332008352|gb|AED95735.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|386305005|gb|AFJ05005.1| hypothetical protein [Arabidopsis thaliana]
Length = 88
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 67/78 (85%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A NPS LLP EL+D+CIGS+I +IMK DKE+VG L GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
R+TKLDQILLNGNNI +L
Sbjct: 61 RVTKLDQILLNGNNIAIL 78
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A NPS LLP EL+D+CIGS+I +IMK DKE+VG L GFD +VNM+LEDVT+
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTE 52
>gi|159474956|ref|XP_001695589.1| Sm-E protein [Chlamydomonas reinhardtii]
gi|158275600|gb|EDP01376.1| Sm-E protein [Chlamydomonas reinhardtii]
Length = 95
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 71/86 (82%), Gaps = 3/86 (3%)
Query: 104 MTAP---SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
M AP + A NPS LLP EL+D+CIGS++ +IMK DKEIVGTL GFD +VNM+LEDVTE
Sbjct: 1 MIAPKKGNYAGNPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTE 60
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
E TPEG+++TKLDQILLNGNNI ML
Sbjct: 61 IEDTPEGKKLTKLDQILLNGNNIAML 86
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%), Gaps = 3/64 (4%)
Query: 1 MTAP---SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M AP + A NPS LLP EL+D+CIGS++ +IMK DKEIVGTL GFD +VNM+LEDVT+
Sbjct: 1 MIAPKKGNYAGNPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTE 60
Query: 58 CHDS 61
D+
Sbjct: 61 IEDT 64
>gi|115463665|ref|NP_001055432.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|357133866|ref|XP_003568543.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Brachypodium distachyon]
gi|54287604|gb|AAV31348.1| putative snRNA associated protein [Oryza sativa Japonica Group]
gi|113578983|dbj|BAF17346.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|215765216|dbj|BAG86913.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196723|gb|EEC79150.1| hypothetical protein OsI_19819 [Oryza sativa Indica Group]
gi|222622229|gb|EEE56361.1| hypothetical protein OsJ_05491 [Oryza sativa Japonica Group]
Length = 89
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 66/75 (88%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGRRIT
Sbjct: 5 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRIT 64
Query: 172 KLDQILLNGNNITML 186
KLDQILLNGNNI +L
Sbjct: 65 KLDQILLNGNNIAIL 79
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 5 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 53
>gi|226504910|ref|NP_001152573.1| SAD1 [Zea mays]
gi|226528898|ref|NP_001149693.1| SAD1 [Zea mays]
gi|242090409|ref|XP_002441037.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|194697624|gb|ACF82896.1| unknown [Zea mays]
gi|195606068|gb|ACG24864.1| SAD1 [Zea mays]
gi|195609070|gb|ACG26365.1| SAD1 [Zea mays]
gi|195629524|gb|ACG36403.1| SAD1 [Zea mays]
gi|195638676|gb|ACG38806.1| SAD1 [Zea mays]
gi|195657645|gb|ACG48290.1| SAD1 [Zea mays]
gi|241946322|gb|EES19467.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|413945216|gb|AFW77865.1| SAD1 isoform 1 [Zea mays]
gi|413945217|gb|AFW77866.1| SAD1 isoform 2 [Zea mays]
gi|413949491|gb|AFW82140.1| SAD1 [Zea mays]
Length = 88
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 66/75 (88%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGRRIT
Sbjct: 5 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRIT 64
Query: 172 KLDQILLNGNNITML 186
KLDQILLNGNNI +L
Sbjct: 65 KLDQILLNGNNIAIL 79
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 5 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 53
>gi|116779179|gb|ABK21171.1| unknown [Picea sitchensis]
gi|116779217|gb|ABK21184.1| unknown [Picea sitchensis]
gi|224285498|gb|ACN40469.1| unknown [Picea sitchensis]
Length = 85
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/75 (77%), Positives = 66/75 (88%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGRRIT
Sbjct: 4 NPSHLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRIT 63
Query: 172 KLDQILLNGNNITML 186
KLDQILLNGNNI +L
Sbjct: 64 KLDQILLNGNNIAIL 78
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 4 NPSHLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|359477805|ref|XP_003632024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Vitis vinifera]
Length = 88
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/79 (74%), Positives = 69/79 (87%), Gaps = 1/79 (1%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY-ESTPEG 167
++TNPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEY E T EG
Sbjct: 1 MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYSEITSEG 60
Query: 168 RRITKLDQILLNGNNITML 186
RRITKLDQILLNGNNI +L
Sbjct: 61 RRITKLDQILLNGNNIAIL 79
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 46/52 (88%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
++TNPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 1 MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 52
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/68 (80%), Positives = 64/68 (94%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
S L+PLELVDKCIGSRIHIIM+NDKEIVGTL GFD+FVNM+LEDVTEYE+T +G++ITK
Sbjct: 2 ASQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITK 61
Query: 173 LDQILLNG 180
L+QILLNG
Sbjct: 62 LEQILLNG 69
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/48 (83%), Positives = 45/48 (93%)
Query: 10 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S L+PLELVDKCIGSRIHIIM+NDKEIVGTL GFD+FVNM+LEDVT+
Sbjct: 2 ASQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTE 49
>gi|168009596|ref|XP_001757491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691185|gb|EDQ77548.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 86
Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 66/75 (88%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
NPS L+P EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGRRIT
Sbjct: 5 NPSHLMPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGRRIT 64
Query: 172 KLDQILLNGNNITML 186
KL+QILLNGNNI +L
Sbjct: 65 KLEQILLNGNNIAIL 79
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 43/49 (87%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
NPS L+P EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVT+
Sbjct: 5 NPSHLMPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTE 53
>gi|302837345|ref|XP_002950232.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
gi|300264705|gb|EFJ48900.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
Length = 95
Score = 118 bits (295), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 69/86 (80%), Gaps = 3/86 (3%)
Query: 104 MTAPSVAT---NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
M AP NPS LLP EL+D+CIGSR+ +IMK DKEIVGTL GFD +VNM+LEDVTE
Sbjct: 1 MIAPKKGNYEGNPSHLLPSELIDRCIGSRMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTE 60
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
E +PEG+++TKLDQILLNGNNI +L
Sbjct: 61 IEDSPEGKKLTKLDQILLNGNNIAIL 86
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 3/64 (4%)
Query: 1 MTAPSVAT---NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M AP NPS LLP EL+D+CIGSR+ +IMK DKEIVGTL GFD +VNM+LEDVT+
Sbjct: 1 MIAPKKGNYEGNPSHLLPSELIDRCIGSRMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTE 60
Query: 58 CHDS 61
DS
Sbjct: 61 IEDS 64
>gi|393912158|gb|EFO25335.2| hypothetical protein LOAG_03146 [Loa loa]
Length = 111
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 65/71 (91%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
LLPLELVDKCIGSRI +IMK +KEIVGTL GFDD+VNM+LEDV EYE+T +G+R+TKLD
Sbjct: 32 LLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKLDT 91
Query: 176 ILLNGNNITML 186
ILLNGN+ITML
Sbjct: 92 ILLNGNHITML 102
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 43/49 (87%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
LLPLELVDKCIGSRI +IMK +KEIVGTL GFDD+VNM+LEDV + ++
Sbjct: 32 LLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENT 80
>gi|170593543|ref|XP_001901523.1| U6 snRNA-associated Sm-like protein LSm5 [Brugia malayi]
gi|312071704|ref|XP_003138731.1| hypothetical protein LOAG_03146 [Loa loa]
gi|158590467|gb|EDP29082.1| U6 snRNA-associated Sm-like protein LSm5, putative [Brugia malayi]
gi|402593447|gb|EJW87374.1| small nuclear ribonucleoprotein [Wuchereria bancrofti]
Length = 91
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 65/71 (91%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
LLPLELVDKCIGSRI +IMK +KEIVGTL GFDD+VNM+LEDV EYE+T +G+R+TKLD
Sbjct: 12 LLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKLDT 71
Query: 176 ILLNGNNITML 186
ILLNGN+ITML
Sbjct: 72 ILLNGNHITML 82
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 43/49 (87%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
LLPLELVDKCIGSRI +IMK +KEIVGTL GFDD+VNM+LEDV + ++
Sbjct: 12 LLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENT 60
>gi|156405924|ref|XP_001640981.1| predicted protein [Nematostella vectensis]
gi|156228118|gb|EDO48918.1| predicted protein [Nematostella vectensis]
Length = 86
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/73 (80%), Positives = 64/73 (87%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFV++L E+TPEGRRITKL
Sbjct: 5 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSILKNVFFCSENTPEGRRITKL 64
Query: 174 DQILLNGNNITML 186
DQILLNGNNITML
Sbjct: 65 DQILLNGNNITML 77
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/41 (85%), Positives = 39/41 (95%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNML 51
S LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFV++L
Sbjct: 5 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSIL 45
>gi|193891015|gb|ACF28661.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 94
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 68/79 (86%), Gaps = 1/79 (1%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
SV++ PS LPL L+DKCIGSRI +IMK DKE+VGTL GFDD+VNM+L+DV EY TPEG
Sbjct: 3 SVSSGPS-YLPLALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEG 61
Query: 168 RRITKLDQILLNGNNITML 186
+++T+L+ ILLNGNNITM+
Sbjct: 62 KKVTQLESILLNGNNITMM 80
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 45/53 (84%), Gaps = 1/53 (1%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
SV++ PS LPL L+DKCIGSRI +IMK DKE+VGTL GFDD+VNM+L+DV +
Sbjct: 3 SVSSGPS-YLPLALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVRE 54
>gi|336376883|gb|EGO05218.1| hypothetical protein SERLA73DRAFT_174233 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389815|gb|EGO30958.1| hypothetical protein SERLADRAFT_455383 [Serpula lacrymans var.
lacrymans S7.9]
Length = 85
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 64/73 (87%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI +IMK+D+E GTL GFDDFVNM+LEDVTEYE+TP+G++ TKL
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKTKL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 AQTLLNGNNICML 75
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI +IMK+D+E GTL GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTE 49
>gi|395334578|gb|EJF66954.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 85
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 64/73 (87%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI +IMKND+E GTL GFDDFVNM+LEDVTEYE+TP+G++ T L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKTTL 62
Query: 174 DQILLNGNNITML 186
+Q LLNGNNI ML
Sbjct: 63 NQTLLNGNNICML 75
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI +IMKND+E GTL GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLEDVTE 49
>gi|340369286|ref|XP_003383179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Amphimedon queenslandica]
Length = 108
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 62/66 (93%), Gaps = 1/66 (1%)
Query: 122 VDKCIGSRIHIIMKN-DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNG 180
VDKCIGSRIHIIMK+ DKEIVGTL GFDDFVN++LEDVTE+E TPEGRRITKLD+ILLNG
Sbjct: 38 VDKCIGSRIHIIMKSSDKEIVGTLLGFDDFVNVVLEDVTEFEMTPEGRRITKLDEILLNG 97
Query: 181 NNITML 186
NNI ML
Sbjct: 98 NNIAML 103
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 38/40 (95%), Gaps = 1/40 (2%)
Query: 19 VDKCIGSRIHIIMKN-DKEIVGTLNGFDDFVNMLLEDVTD 57
VDKCIGSRIHIIMK+ DKEIVGTL GFDDFVN++LEDVT+
Sbjct: 38 VDKCIGSRIHIIMKSSDKEIVGTLLGFDDFVNVVLEDVTE 77
>gi|226467448|emb|CAX69600.1| U6 snRNA-associated Sm-like protein LSm5 [Schistosoma japonicum]
Length = 87
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 65/76 (85%), Gaps = 1/76 (1%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
T P LLPLELVDKCIGSRIHIIMKNDKE+VGTL GFD +VNM+L DVTE+E T +G+RI
Sbjct: 4 TGPQ-LLPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDGYVNMVLVDVTEFEFTAQGKRI 62
Query: 171 TKLDQILLNGNNITML 186
TKL ILLNG+NI M+
Sbjct: 63 TKLSHILLNGSNIAMM 78
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Query: 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T P LLPLELVDKCIGSRIHIIMKNDKE+VGTL GFD +VNM+L DVT+
Sbjct: 4 TGPQ-LLPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDGYVNMVLVDVTE 52
>gi|169843758|ref|XP_001828604.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea okayama7#130]
gi|116510312|gb|EAU93207.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea okayama7#130]
Length = 84
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 64/73 (87%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGS+I ++MKND+E GTL GFDDFVNM+LEDVTE+E+TP+GR+ TKL
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFTGTLLGFDDFVNMVLEDVTEFENTPQGRKKTKL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 TQTLLNGNNICML 75
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 44/51 (86%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
S +LPLEL+D+CIGS+I ++MKND+E GTL GFDDFVNM+LEDVT+ ++
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFTGTLLGFDDFVNMVLEDVTEFENT 53
>gi|392571152|gb|EIW64324.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 85
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 64/73 (87%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI +IMK+++E GTL GFDDFVNM+LEDVTEYE TP+GR+ TKL
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEHTPQGRKKTKL 62
Query: 174 DQILLNGNNITML 186
+Q LLNGNNI ML
Sbjct: 63 NQTLLNGNNICML 75
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI +IMK+++E GTL GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSEREFTGTLLGFDDFVNMVLEDVTE 49
>gi|390597684|gb|EIN07083.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 84
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 64/73 (87%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI +IMKND+E GTL GFDDFVNM+L+DVTE+E+TPEG++ T+L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTEFETTPEGKKKTQL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 AQTLLNGNNICML 75
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI +IMKND+E GTL GFDDFVNM+L+DVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTE 49
>gi|426201795|gb|EKV51718.1| hypothetical protein AGABI2DRAFT_189942 [Agaricus bisporus var.
bisporus H97]
Length = 84
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 63/73 (86%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGS+I ++MKND+E GTL GFDDFVNM+LEDV EYE+TPEG++ TKL
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKETKL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 SQTLLNGNNICML 75
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGS+I ++MKND+E GTL GFDDFVNM+LEDV +
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIE 49
>gi|449551015|gb|EMD41979.1| hypothetical protein CERSUDRAFT_110522 [Ceriporiopsis subvermispora
B]
Length = 85
Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 64/73 (87%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI +IMK+D+E GTL GFDDFVNM+LEDVTEYE+TP+G++ T+L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYENTPQGKKKTQL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 AQTLLNGNNICML 75
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 44/51 (86%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
S +LPLEL+D+CIGSRI +IMK+D+E GTL GFDDFVNM+LEDVT+ ++
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYENT 53
>gi|307104476|gb|EFN52729.1| hypothetical protein CHLNCDRAFT_138271 [Chlorella variabilis]
Length = 99
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 71/90 (78%), Gaps = 7/90 (7%)
Query: 104 MTAP---SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLN----GFDDFVNMLLE 156
M AP ++A NPS +LP EL+D+C+GS++ ++M+ DKEI GTL GFD FVNM+LE
Sbjct: 1 MIAPKRQNLAGNPSQILPSELIDRCVGSKVWVVMRGDKEIEGTLRRVAAGFDVFVNMVLE 60
Query: 157 DVTEYESTPEGRRITKLDQILLNGNNITML 186
DVTEYE TPEG+++T LDQILLNGNNI +L
Sbjct: 61 DVTEYEITPEGKKVTHLDQILLNGNNIAVL 90
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 7/64 (10%)
Query: 1 MTAP---SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLN----GFDDFVNMLLE 53
M AP ++A NPS +LP EL+D+C+GS++ ++M+ DKEI GTL GFD FVNM+LE
Sbjct: 1 MIAPKRQNLAGNPSQILPSELIDRCVGSKVWVVMRGDKEIEGTLRRVAAGFDVFVNMVLE 60
Query: 54 DVTD 57
DVT+
Sbjct: 61 DVTE 64
>gi|256073118|ref|XP_002572879.1| hypothetical protein [Schistosoma mansoni]
gi|360045255|emb|CCD82803.1| hypothetical protein Smp_129760 [Schistosoma mansoni]
Length = 87
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 65/76 (85%), Gaps = 1/76 (1%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
T P LLPLELVDKCIGS+IHIIMKNDKE+VGTL GFD +VNM+L DVTE+E T +G+RI
Sbjct: 4 TGPQ-LLPLELVDKCIGSKIHIIMKNDKEMVGTLLGFDSYVNMVLADVTEFEFTAQGKRI 62
Query: 171 TKLDQILLNGNNITML 186
TKL ILLNG+NI M+
Sbjct: 63 TKLPHILLNGSNIVMM 78
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 44/50 (88%), Gaps = 1/50 (2%)
Query: 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T P LLPLELVDKCIGS+IHIIMKNDKE+VGTL GFD +VNM+L DVT+
Sbjct: 4 TGPQ-LLPLELVDKCIGSKIHIIMKNDKEMVGTLLGFDSYVNMVLADVTE 52
>gi|409083153|gb|EKM83510.1| hypothetical protein AGABI1DRAFT_110162 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 84
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 63/73 (86%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGS+I ++MKND+E GTL GFDDFVNM+LEDV EYE+TPEG++ TKL
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKETKL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 AQTLLNGNNICML 75
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGS+I ++MKND+E GTL GFDDFVNM+LEDV +
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIE 49
>gi|440897230|gb|ELR48967.1| hypothetical protein M91_08025 [Bos grunniens mutus]
Length = 81
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 64/77 (83%), Gaps = 1/77 (1%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLP ELVDKCI SRI I+M++DKEIVGTL GFD F M+LEDVTE+E TP
Sbjct: 2 AANSTTNPSQLLPQELVDKCIASRICIVMQSDKEIVGTLQGFDGFGTMVLEDVTEFEVTP 61
Query: 166 EGRRITKLDQILLNGNN 182
+G RITKLD+ILLNGNN
Sbjct: 62 QG-RITKLDEILLNGNN 77
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 44/55 (80%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLP ELVDKCI SRI I+M++DKEIVGTL GFD F M+LEDVT+
Sbjct: 2 AANSTTNPSQLLPQELVDKCIASRICIVMQSDKEIVGTLQGFDGFGTMVLEDVTE 56
>gi|145348592|ref|XP_001418730.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578960|gb|ABO97023.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 93
Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
+ A + NPS +LP ELV++C+GS + ++MK+++E+VGTL GFD +VNM+LEDVTEYE
Sbjct: 2 ALPAKAANANPSLVLPSELVERCVGSPLWVLMKSERELVGTLRGFDVYVNMVLEDVTEYE 61
Query: 163 STPEGRRIT-KLDQILLNGNNITML 186
+T EGRR+T +LDQILLNGNNI ML
Sbjct: 62 TTAEGRRVTGRLDQILLNGNNIAML 86
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 46/57 (80%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ A + NPS +LP ELV++C+GS + ++MK+++E+VGTL GFD +VNM+LEDVT+
Sbjct: 3 LPAKAANANPSLVLPSELVERCVGSPLWVLMKSERELVGTLRGFDVYVNMVLEDVTE 59
>gi|358054346|dbj|GAA99272.1| hypothetical protein E5Q_05966 [Mixia osmundae IAM 14324]
Length = 83
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 65/73 (89%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ +LPLEL+DKCIGSR+ +++K+++EIVGTL GFDDFVNM+L+DVTEYE+T +GR+ TKL
Sbjct: 3 TQILPLELIDKCIGSRLWVVLKSEREIVGTLLGFDDFVNMVLDDVTEYENTAQGRKATKL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 GQTLLNGNNIAML 75
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 46/51 (90%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
+ +LPLEL+DKCIGSR+ +++K+++EIVGTL GFDDFVNM+L+DVT+ ++
Sbjct: 3 TQILPLELIDKCIGSRLWVVLKSEREIVGTLLGFDDFVNMVLDDVTEYENT 53
>gi|401413338|ref|XP_003886116.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
gi|325120536|emb|CBZ56090.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
Length = 118
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
T+ V+ PS LPL LVDKCIGSR+ IIMK DKE+ GTL GFDDFVNM+L+DVTEY T
Sbjct: 13 TSGVVSGGPS-YLPLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFT 71
Query: 165 PEGRRITKLDQILLNGNNITML 186
P G + TKL ILLNGNNITML
Sbjct: 72 PTGVKKTKLQSILLNGNNITML 93
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%), Gaps = 1/56 (1%)
Query: 2 TAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+ V+ PS LPL LVDKCIGSR+ IIMK DKE+ GTL GFDDFVNM+L+DVT+
Sbjct: 13 TSGVVSGGPS-YLPLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLDDVTE 67
>gi|170085071|ref|XP_001873759.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651311|gb|EDR15551.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI +IMK+D+E G L GFDDFVNM+LEDVTEYE+TP+G++ T+L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGKLLGFDDFVNMVLEDVTEYETTPQGKKTTQL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 AQTLLNGNNICML 75
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI +IMK+D+E G L GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGKLLGFDDFVNMVLEDVTE 49
>gi|384249954|gb|EIE23434.1| Sm-E protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 3/86 (3%)
Query: 104 MTAPSVAT---NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
M AP A+ NPS L+P EL+DKCI S+I +IMK DKE+ GTL GFD FVNM+LEDV E
Sbjct: 1 MIAPKKASFQGNPSHLMPSELIDKCINSKIWVIMKGDKELQGTLRGFDVFVNMVLEDVEE 60
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
YE T EG R+T +DQILLNGNNI +L
Sbjct: 61 YEMTAEGLRVTHMDQILLNGNNIAVL 86
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 45/60 (75%), Gaps = 3/60 (5%)
Query: 1 MTAPSVAT---NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M AP A+ NPS L+P EL+DKCI S+I +IMK DKE+ GTL GFD FVNM+LEDV +
Sbjct: 1 MIAPKKASFQGNPSHLMPSELIDKCINSKIWVIMKGDKELQGTLRGFDVFVNMVLEDVEE 60
>gi|428180050|gb|EKX48919.1| hypothetical protein GUITHDRAFT_93594 [Guillardia theta CCMP2712]
Length = 94
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR-R 169
T LLPLEL+D+CIGSRI II+K DKE VGTL GFDD+VNM+LEDVTE+E P+G R
Sbjct: 4 TMGGQLLPLELIDRCIGSRIWIILKGDKEFVGTLQGFDDYVNMVLEDVTEFEVNPDGGYR 63
Query: 170 ITKLDQILLNGNNITML 186
TKLDQILLNGNNI ML
Sbjct: 64 ETKLDQILLNGNNICML 80
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%)
Query: 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T LLPLEL+D+CIGSRI II+K DKE VGTL GFDD+VNM+LEDVT+
Sbjct: 4 TMGGQLLPLELIDRCIGSRIWIILKGDKEFVGTLQGFDDYVNMVLEDVTE 53
>gi|237835661|ref|XP_002367128.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|211964792|gb|EEA99987.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|221485337|gb|EEE23618.1| snRNP protein Lsm5, putative [Toxoplasma gondii GT1]
gi|221506198|gb|EEE31833.1| snRNP protein Lsm5, putative [Toxoplasma gondii VEG]
Length = 119
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 65/93 (69%), Gaps = 9/93 (9%)
Query: 103 TMTAPSVATNPST---------LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNM 153
+ AP + P+T LPL LVDKCIGSR+ IIMK DKE+ GTL GFDDFVNM
Sbjct: 2 SAAAPKATSAPATSGVVSGGPSYLPLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNM 61
Query: 154 LLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+L+DVTEY TP G + TKL ILLNGN+ITML
Sbjct: 62 VLDDVTEYTFTPTGVKKTKLQSILLNGNSITML 94
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%), Gaps = 9/64 (14%)
Query: 3 APSVATNPST---------LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53
AP + P+T LPL LVDKCIGSR+ IIMK DKE+ GTL GFDDFVNM+L+
Sbjct: 5 APKATSAPATSGVVSGGPSYLPLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLD 64
Query: 54 DVTD 57
DVT+
Sbjct: 65 DVTE 68
>gi|393218481|gb|EJD03969.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 85
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D CIGSRI +IMKND+E GTL GFDDFVNM+L+DVTEY+ PEGR++T L
Sbjct: 3 SQVLPLELIDTCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTEYQYLPEGRKVTML 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 RQTLLNGNNICML 75
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D CIGSRI +IMKND+E GTL GFDDFVNM+L+DVT+
Sbjct: 3 SQVLPLELIDTCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTE 49
>gi|167517977|ref|XP_001743329.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778428|gb|EDQ92043.1| predicted protein [Monosiga brevicollis MX1]
Length = 83
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 61/73 (83%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ L PLELVDKCIGSRIH+IMKNDKE+VGTL GFDDFVNM+LEDV EY TP GR + +
Sbjct: 3 AALQPLELVDKCIGSRIHVIMKNDKELVGTLLGFDDFVNMVLEDVKEYVITPNGREVHRQ 62
Query: 174 DQILLNGNNITML 186
+ILLNG+NI +L
Sbjct: 63 KKILLNGSNIAIL 75
Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/47 (80%), Positives = 43/47 (91%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ L PLELVDKCIGSRIH+IMKNDKE+VGTL GFDDFVNM+LEDV +
Sbjct: 3 AALQPLELVDKCIGSRIHVIMKNDKELVGTLLGFDDFVNMVLEDVKE 49
>gi|302697739|ref|XP_003038548.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune H4-8]
gi|300112245|gb|EFJ03646.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune H4-8]
Length = 84
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 61/73 (83%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI ++MKND E GTL GFDDFVNM+LEDVTEYE+T GR+ T+L
Sbjct: 3 SQILPLELIDRCIGSRIWVVMKNDHEFTGTLLGFDDFVNMVLEDVTEYETTAAGRKKTQL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI +L
Sbjct: 63 AQTLLNGNNICIL 75
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI ++MKND E GTL GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVVMKNDHEFTGTLLGFDDFVNMVLEDVTE 49
>gi|299471840|emb|CBN77010.1| Sm-like protein LSm5 [Ectocarpus siliculosus]
Length = 85
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/74 (70%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG-RRITK 172
+ LLPLEL+DKCIGSR+ IIMK DKE+VGTL GFDD+VNM+L+DVTEYE +G +R +
Sbjct: 3 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQ 62
Query: 173 LDQILLNGNNITML 186
LDQILLNGNN+ ML
Sbjct: 63 LDQILLNGNNVAML 76
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 43/47 (91%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ LLPLEL+DKCIGSR+ IIMK DKE+VGTL GFDD+VNM+L+DVT+
Sbjct: 3 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTE 49
>gi|389751535|gb|EIM92608.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 85
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI +IMKN++E GTL GFDDFVNM+LEDVTE+E T GR+ T L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNEREFTGTLLGFDDFVNMVLEDVTEFEITSAGRKKTAL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 RQTLLNGNNICML 75
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI +IMKN++E GTL GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNEREFTGTLLGFDDFVNMVLEDVTE 49
>gi|388579402|gb|EIM19726.1| LSM-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 87
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG-RRITK 172
S +LPLEL+DKCIGSRI +IMKN++E VGTL GFDDFVNM+L+DVTEY+ +P+G ++ +K
Sbjct: 3 SQILPLELIDKCIGSRIWVIMKNEREFVGTLQGFDDFVNMVLDDVTEYDISPDGTQKKSK 62
Query: 173 LDQILLNGNNITML 186
L Q LLNGNN+ ML
Sbjct: 63 LRQTLLNGNNVCML 76
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 43/47 (91%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+DKCIGSRI +IMKN++E VGTL GFDDFVNM+L+DVT+
Sbjct: 3 SQILPLELIDKCIGSRIWVIMKNEREFVGTLQGFDDFVNMVLDDVTE 49
>gi|323507716|emb|CBQ67587.1| probable U6 snRNA-associated Sm-like protein LSm5 [Sporisorium
reilianum SRZ2]
Length = 103
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG-RRITKL 173
T+LPLEL+DKCIGS I +IMK D+E GTL GFDD+VNM+LEDVTEYE+TP+G ++ TKL
Sbjct: 21 TILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETTPDGKKKKTKL 80
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 81 GQTLLNGNNICML 93
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 40/46 (86%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIGS I +IMK D+E GTL GFDD+VNM+LEDVT+
Sbjct: 21 TILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTE 66
>gi|392597490|gb|EIW86812.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 84
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 60/73 (82%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGS+I ++MK D+E GTL GFDDFVNM+LEDVTE+E T EG + TKL
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKGDREFSGTLLGFDDFVNMVLEDVTEFEITAEGIKQTKL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 SQTLLNGNNICML 75
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGS+I ++MK D+E GTL GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKGDREFSGTLLGFDDFVNMVLEDVTE 49
>gi|193890979|gb|ACF28643.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 82
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 60/68 (88%)
Query: 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILL 178
L L+DKCIGSRI +IMK DKE+VGTL GFDD+VNM+L+DV EY TPEG+++T+L+ ILL
Sbjct: 1 LALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEGKKVTQLESILL 60
Query: 179 NGNNITML 186
NGNNITM+
Sbjct: 61 NGNNITMM 68
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
L L+DKCIGSRI +IMK DKE+VGTL GFDD+VNM+L+DV +
Sbjct: 1 LALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVRE 42
>gi|66827081|ref|XP_646895.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74859089|sp|Q55EX5.1|LSM5_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm5
gi|60475011|gb|EAL72947.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVTEYE TPEG + KL
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 174 DQILLNGNNITML 186
D ILLNGN++ +L
Sbjct: 74 DNILLNGNHVCLL 86
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVT+
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTE 60
>gi|328856633|gb|EGG05753.1| hypothetical protein MELLADRAFT_87625 [Melampsora larici-populina
98AG31]
Length = 935
Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
ST+LPLEL+D+CIGSRI ++MK +E G L GFDD+VNM+LEDVTEYE+T EG +IT L
Sbjct: 855 STILPLELIDRCIGSRIWVVMKTGREFTGKLLGFDDYVNMVLEDVTEYETTAEGHKITNL 914
Query: 174 DQILLNGNNITML 186
Q LLNGN I ML
Sbjct: 915 KQTLLNGNQICML 927
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH---DSHLLSYF 67
ST+LPLEL+D+CIGSRI ++MK +E G L GFDD+VNM+LEDVT+ + H ++
Sbjct: 855 STILPLELIDRCIGSRIWVVMKTGREFTGKLLGFDDYVNMVLEDVTEYETTAEGHKITNL 914
Query: 68 ASDLIN 73
L+N
Sbjct: 915 KQTLLN 920
>gi|403166044|ref|XP_003325954.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375166048|gb|EFP81535.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 128
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
ST+LPLEL+D+CIGSRI +IMK +E G L GFDD+VNM+LEDVTE+E+T EG+++T L
Sbjct: 3 STILPLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNL 62
Query: 174 DQILLNGNNITML 186
Q LLNGN I M+
Sbjct: 63 KQTLLNGNQICMV 75
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ST+LPLEL+D+CIGSRI +IMK +E G L GFDD+VNM+LEDVT+
Sbjct: 3 STILPLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTE 49
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 70/87 (80%), Gaps = 4/87 (4%)
Query: 103 TMTAP--SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
T++AP + AT PS LPL LVDKC+GSRI +IM+ D+E+VGTL GFDD+VNM+L+DVTE
Sbjct: 4 TVSAPPTATATGPS-FLPLALVDKCVGSRIWVIMRGDRELVGTLRGFDDYVNMVLDDVTE 62
Query: 161 YESTPE-GRRITKLDQILLNGNNITML 186
Y P+ G+R+ K++ ILLNG+++ ML
Sbjct: 63 YTILPDGGKRVDKIESILLNGSSVAML 89
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 49/59 (83%), Gaps = 3/59 (5%)
Query: 1 MTAP--SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
++AP + AT PS LPL LVDKC+GSRI +IM+ D+E+VGTL GFDD+VNM+L+DVT+
Sbjct: 5 VSAPPTATATGPS-FLPLALVDKCVGSRIWVIMRGDRELVGTLRGFDDYVNMVLDDVTE 62
>gi|330801323|ref|XP_003288678.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
gi|325081300|gb|EGC34821.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
Length = 92
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 62/81 (76%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
+ +T +LPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVTEYE TP
Sbjct: 2 SEEASTQIEQILPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EG + KLD ILLNGN++ +L
Sbjct: 62 EGLKTIKLDNILLNGNHVCLL 82
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ +T +LPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVT+
Sbjct: 2 SEEASTQIEQILPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTE 56
>gi|403166042|ref|XP_003889979.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
gi|375166047|gb|EHS63049.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 84
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
ST+LPLEL+D+CIGSRI +IMK +E G L GFDD+VNM+LEDVTE+E+T EG+++T L
Sbjct: 3 STILPLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNL 62
Query: 174 DQILLNGNNITML 186
Q LLNGN I ML
Sbjct: 63 KQTLLNGNQICML 75
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ST+LPLEL+D+CIGSRI +IMK +E G L GFDD+VNM+LEDVT+
Sbjct: 3 STILPLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTE 49
>gi|393247655|gb|EJD55162.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 85
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 62/74 (83%), Gaps = 1/74 (1%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG-RRITK 172
S +LPLEL+D+CIGSRI ++MK ++E GTL GFDDFVNM+LEDVTEYE+ P+G R+ TK
Sbjct: 3 SQILPLELIDRCIGSRIWVVMKTEREFTGTLLGFDDFVNMVLEDVTEYETLPDGSRKKTK 62
Query: 173 LDQILLNGNNITML 186
L Q LLNGNNI +L
Sbjct: 63 LRQTLLNGNNICIL 76
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI ++MK ++E GTL GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVVMKTEREFTGTLLGFDDFVNMVLEDVTE 49
>gi|296423698|ref|XP_002841390.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637628|emb|CAZ85581.1| unnamed protein product [Tuber melanosporum]
Length = 84
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 59/73 (80%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLELVDKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVTEYEST E KL
Sbjct: 3 SQLLPLELVDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEYESTGE---QVKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 KKILLNGNNICML 72
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLELVDKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELVDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|259484847|tpe|CBF81418.1| TPA: small nuclear ribonucleoprotein (LSM5), putative
(AFU_orthologue; AFUA_7G04280) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 78/114 (68%), Gaps = 8/114 (7%)
Query: 78 LPMITPITCAYSRSHQYRTLTHL-----LYTMTAPSVATNPSTLLPLELVDKCIGSRIHI 132
L + + I + S +++Y + L ++ +P+ S LLPLEL+DKC+GSRI I
Sbjct: 8 LALESSIQGSRSTNYKYHIPSALYNSQKVFCWESPAYPKMASQLLPLELIDKCVGSRIWI 67
Query: 133 IMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
IMKNDKE GTL GFDD+VNM+LEDVTE++ T G ++ KL +ILLNGNNI ML
Sbjct: 68 IMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYT--GAQV-KLPKILLNGNNICML 118
Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+P+ S LLPLEL+DKC+GSRI IIMKNDKE GTL GFDD+VNM+LEDVT+
Sbjct: 41 SPAYPKMASQLLPLELIDKCVGSRIWIIMKNDKEFSGTLLGFDDYVNMVLEDVTE 95
>gi|326426796|gb|EGD72366.1| U6 snRNA-associated Sm-like protein LSm5 [Salpingoeca sp. ATCC
50818]
Length = 87
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 61/73 (83%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+DKCIGSRIH++MK+DKE+VG L GFD+FVNM+L DVTE+E+ PEG +K
Sbjct: 2 SQVLPLELIDKCIGSRIHVVMKSDKELVGWLKGFDEFVNMVLTDVTEFENGPEGIVTSKR 61
Query: 174 DQILLNGNNITML 186
+ILL+G +I ML
Sbjct: 62 KEILLSGTHIAML 74
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 44/51 (86%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
S +LPLEL+DKCIGSRIH++MK+DKE+VG L GFD+FVNM+L DVT+ +
Sbjct: 2 SQVLPLELIDKCIGSRIHVVMKSDKELVGWLKGFDEFVNMVLTDVTEFENG 52
>gi|392577759|gb|EIW70888.1| hypothetical protein TREMEDRAFT_29158 [Tremella mesenterica DSM
1558]
Length = 85
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 58/73 (79%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
ST+LPLELVD+CIGS IH+IMKN++E GTL GFDD+VNM+L DV EY+ TP G T L
Sbjct: 3 STILPLELVDRCIGSPIHVIMKNEREFTGTLMGFDDYVNMVLRDVKEYQVTPGGIIETPL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 GQTLLNGNNIVML 75
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ST+LPLELVD+CIGS IH+IMKN++E GTL GFDD+VNM+L DV +
Sbjct: 3 STILPLELVDRCIGSPIHVIMKNEREFTGTLMGFDDYVNMVLRDVKE 49
>gi|328865149|gb|EGG13535.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 98
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Query: 104 MTAPSVATNPST-LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
+ +P + P+T +LPLEL++KCIGSRI I MKN+KE VGTL GFD +VN+ L+DV EYE
Sbjct: 5 VASPPTSNTPTTQILPLELIEKCIGSRIWICMKNEKEFVGTLLGFDTYVNIFLKDVIEYE 64
Query: 163 STPEGRRITKLDQILLNGNNITML 186
+TPEG + KL+ ILLNGN++ ++
Sbjct: 65 NTPEGTKQIKLEYILLNGNHVCLV 88
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 1 MTAPSVATNPST-LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
+ +P + P+T +LPLEL++KCIGSRI I MKN+KE VGTL GFD +VN+ L+DV +
Sbjct: 5 VASPPTSNTPTTQILPLELIEKCIGSRIWICMKNEKEFVGTLLGFDTYVNIFLKDVIEYE 64
Query: 60 DS 61
++
Sbjct: 65 NT 66
>gi|308806167|ref|XP_003080395.1| Sm-like protein (ISS) [Ostreococcus tauri]
gi|116058855|emb|CAL54562.1| Sm-like protein (ISS) [Ostreococcus tauri]
Length = 95
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 66/86 (76%), Gaps = 3/86 (3%)
Query: 104 MTAPSVA--TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY 161
M PS A +NPS LLP ELV++C+GS + ++MK +KE+ GTL GFD +VNM+LEDVTEY
Sbjct: 1 MALPSRAGTSNPSALLPSELVERCVGSPLWVLMKGEKEMTGTLRGFDVYVNMVLEDVTEY 60
Query: 162 ESTPEGRRIT-KLDQILLNGNNITML 186
E T GR T ++DQILLNGNN+ +L
Sbjct: 61 EMTANGRVETGRMDQILLNGNNVAIL 86
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 1 MTAPSVA--TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M PS A +NPS LLP ELV++C+GS + ++MK +KE+ GTL GFD +VNM+LEDVT+
Sbjct: 1 MALPSRAGTSNPSALLPSELVERCVGSPLWVLMKGEKEMTGTLRGFDVYVNMVLEDVTE 59
>gi|443896082|dbj|GAC73426.1| U6 snRNA-associated Sm-like protein [Pseudozyma antarctica T-34]
Length = 103
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 61/73 (83%), Gaps = 1/73 (1%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG-RRITKL 173
T+LPLEL+DKCIGS I +IMK+++E GTL GFDD+VNM+LEDVTEYE+ +G ++ TKL
Sbjct: 21 TILPLELIDKCIGSSIWVIMKSEREFSGTLLGFDDYVNMVLEDVTEYETAQDGKKKKTKL 80
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 81 GQTLLNGNNICML 93
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 42/51 (82%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
T+LPLEL+DKCIGS I +IMK+++E GTL GFDD+VNM+LEDVT+ +
Sbjct: 21 TILPLELIDKCIGSSIWVIMKSEREFSGTLLGFDDYVNMVLEDVTEYETAQ 71
>gi|452822058|gb|EME29081.1| U6 snRNA-associated Sm-like protein LSm5 [Galdieria sulphuraria]
Length = 89
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 57/71 (80%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPLELVDKCIGS+I ++MK DKE G L GFD FVNM+LEDV+EYE T EG T LDQ
Sbjct: 8 VLPLELVDKCIGSQIWVLMKTDKEFTGILRGFDQFVNMVLEDVSEYEWTSEGLIRTHLDQ 67
Query: 176 ILLNGNNITML 186
ILLNGNNI +L
Sbjct: 68 ILLNGNNICVL 78
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLELVDKCIGS+I ++MK DKE G L GFD FVNM+LEDV++
Sbjct: 8 VLPLELVDKCIGSQIWVLMKTDKEFTGILRGFDQFVNMVLEDVSE 52
>gi|71033371|ref|XP_766327.1| U6 small nuclear ribonucleoprotein E [Theileria parva strain
Muguga]
gi|68353284|gb|EAN34044.1| U6 small nuclear ribonucleoprotein E, putative [Theileria parva]
Length = 90
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 59/73 (80%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ LPL L+DKC+GS+I IIMKNDKEI GTL GFDD++NM+LEDV +Y +P+G + T+L
Sbjct: 8 AVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSPDGVKTTEL 67
Query: 174 DQILLNGNNITML 186
+ L+NGNN+ ML
Sbjct: 68 NDALVNGNNVAML 80
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ LPL L+DKC+GS+I IIMKNDKEI GTL GFDD++NM+LEDV D
Sbjct: 8 AVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVD 54
>gi|281208052|gb|EFA82230.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 86
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+LPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVTEYE TPEG + KL
Sbjct: 4 EQVLPLELIEKCIGSRIWICMKNDKEFVGTLLGFDTYVNIFLKDVTEYEFTPEGIKPIKL 63
Query: 174 DQILLNGNNITML 186
+ ILLNGN++ +L
Sbjct: 64 ETILLNGNHVCLL 76
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 39/47 (82%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVT+
Sbjct: 4 EQVLPLELIEKCIGSRIWICMKNDKEFVGTLLGFDTYVNIFLKDVTE 50
>gi|317139035|ref|XP_003189120.1| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus oryzae RIB40]
Length = 102
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
+T S LLPLEL+DKC+GSRI +IMKNDKE GTL GFDD+VNM+LEDVTE++ + G +
Sbjct: 18 STMASQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDYS--GAQ 75
Query: 170 ITKLDQILLNGNNITML 186
I KL +ILLNGNN+ ML
Sbjct: 76 I-KLPKILLNGNNVCML 91
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/51 (72%), Positives = 44/51 (86%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+T S LLPLEL+DKC+GSRI +IMKNDKE GTL GFDD+VNM+LEDVT+
Sbjct: 18 STMASQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 68
>gi|428672985|gb|EKX73898.1| U6 small nuclear ribonucleoprotein E, putative [Babesia equi]
Length = 88
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/79 (59%), Positives = 58/79 (73%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
S + + LPL L+DKC+GS+I IIMK DKEI G L GFDD++NM+LE+VTEY TPEG
Sbjct: 2 STIESSACYLPLALIDKCLGSKIWIIMKGDKEIAGILRGFDDYMNMVLEEVTEYSFTPEG 61
Query: 168 RRITKLDQILLNGNNITML 186
+ TKL L+NGN I ML
Sbjct: 62 IKTTKLSDALVNGNYIAML 80
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 41/53 (77%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S + + LPL L+DKC+GS+I IIMK DKEI G L GFDD++NM+LE+VT+
Sbjct: 2 STIESSACYLPLALIDKCLGSKIWIIMKGDKEIAGILRGFDDYMNMVLEEVTE 54
>gi|195374175|ref|XP_002046059.1| GM26694 [Drosophila sechellia]
gi|194123247|gb|EDW45290.1| GM26694 [Drosophila sechellia]
Length = 61
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/53 (90%), Positives = 52/53 (98%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
MKNDKE+VGTL GFDDFVNMLL+DVTEYE+TP+GRRITKLDQILLNGNNITML
Sbjct: 1 MKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITML 53
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 31 MKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
MKNDKE+VGTL GFDDFVNMLL+DVT+ ++
Sbjct: 1 MKNDKEMVGTLLGFDDFVNMLLDDVTEYENT 31
>gi|353243444|emb|CCA74984.1| probable U6 snRNA-associated Sm-like protein LSm5 [Piriformospora
indica DSM 11827]
Length = 84
Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI-TK 172
S +LPLEL+D+CIGSRI +I+KND+E G L GFDDFVNM+LEDVTE ++ P G R+ TK
Sbjct: 3 SQILPLELIDRCIGSRITVILKNDREFTGVLLGFDDFVNMVLEDVTECQTLPSGERVKTK 62
Query: 173 LDQILLNGNNITML 186
L LLNGNNI +L
Sbjct: 63 LQTTLLNGNNICIL 76
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
S +LPLEL+D+CIGSRI +I+KND+E G L GFDDFVNM+LEDVT+C
Sbjct: 3 SQILPLELIDRCIGSRITVILKNDREFTGVLLGFDDFVNMVLEDVTECQ 51
>gi|225681342|gb|EEH19626.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 130
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 4/90 (4%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ T TK
Sbjct: 2 ASQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQ---TK 58
Query: 173 LDQILLNGNNITMLGLHTHCG-MRPYIQHS 201
L +ILLNGNN+ ML H G + YI +
Sbjct: 59 LPKILLNGNNVCMLAYLIHGGKLSEYIAAT 88
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 41/48 (85%)
Query: 10 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 2 ASQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|238482069|ref|XP_002372273.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
gi|220700323|gb|EED56661.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
Length = 83
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 61/73 (83%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMKNDKE GTL GFDD+VNM+LEDVTE++ + G +I KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDYS--GAQI-KL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 PKILLNGNNVCML 72
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMKNDKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 49
>gi|402217704|gb|EJT97783.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 85
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 57/73 (78%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLEL+D+CIGSRI +I K ++E G L GFDDFVNM+LEDVTE+ +T EG + KL
Sbjct: 3 SQILPLELIDRCIGSRIWVITKTEREFAGRLLGFDDFVNMVLEDVTEFITTEEGVKKVKL 62
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 63 QQTLLNGNNICML 75
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 39/47 (82%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLEL+D+CIGSRI +I K ++E G L GFDDFVNM+LEDVT+
Sbjct: 3 SQILPLELIDRCIGSRIWVITKTEREFAGRLLGFDDFVNMVLEDVTE 49
>gi|164657261|ref|XP_001729757.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
gi|159103650|gb|EDP42543.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
Length = 87
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+T+LPLELVD+CIGS I ++MK +E VG L GFDD+VNM+LED EYE TP+G + T L
Sbjct: 5 ATILPLELVDRCIGSSIWVVMKGQREFVGKLLGFDDYVNMVLEDAVEYEETPDGYKKTHL 64
Query: 174 DQILLNGNNITML 186
+ LLNGNNI L
Sbjct: 65 SKTLLNGNNICTL 77
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH---DSHLLSYF 67
+T+LPLELVD+CIGS I ++MK +E VG L GFDD+VNM+LED + D + ++
Sbjct: 5 ATILPLELVDRCIGSSIWVVMKGQREFVGKLLGFDDYVNMVLEDAVEYEETPDGYKKTHL 64
Query: 68 ASDLIN 73
+ L+N
Sbjct: 65 SKTLLN 70
>gi|195222722|ref|NP_001124182.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|213385305|ref|NP_001132971.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|332242764|ref|XP_003270554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Nomascus leucogenys]
gi|332242766|ref|XP_003270555.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Nomascus leucogenys]
gi|332242768|ref|XP_003270556.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 4
[Nomascus leucogenys]
gi|332864463|ref|XP_003318296.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1 [Pan
troglodytes]
gi|332864465|ref|XP_003318297.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2 [Pan
troglodytes]
gi|402863786|ref|XP_003896180.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 2
[Papio anubis]
gi|410058757|ref|XP_003951029.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|410058759|ref|XP_003951030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|426355883|ref|XP_004045333.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 3
[Gorilla gorilla gorilla]
gi|426355885|ref|XP_004045334.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 4
[Gorilla gorilla gorilla]
gi|426355887|ref|XP_004045335.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 5
[Gorilla gorilla gorilla]
gi|426355889|ref|XP_004045336.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform 6
[Gorilla gorilla gorilla]
gi|441650806|ref|XP_004091023.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Nomascus
leucogenys]
gi|344235531|gb|EGV91634.1| U6 snRNA-associated Sm-like protein LSm5 [Cricetulus griseus]
Length = 62
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/53 (90%), Positives = 51/53 (96%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
MK+DKEIVGTL GFDDFVNM+LEDVTE+E TPEGRRITKLDQILLNGNNITML
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 53
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 26/29 (89%)
Query: 31 MKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFE 29
>gi|388852511|emb|CCF53913.1| probable U6 snRNA-associated Sm-like protein LSm5 [Ustilago hordei]
Length = 103
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG-RRITKL 173
T+LPLEL+DKCIGS I +IMK D+E GTL GFDD+VNM+LEDVTEYE+ +G ++ T+L
Sbjct: 21 TILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETCLDGKKKKTEL 80
Query: 174 DQILLNGNNITML 186
Q LLNGNNI ML
Sbjct: 81 GQTLLNGNNICML 93
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 40/46 (86%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIGS I +IMK D+E GTL GFDD+VNM+LEDVT+
Sbjct: 21 TILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTE 66
>gi|317034233|ref|XP_001396223.2| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus niger CBS
513.88]
gi|358373053|dbj|GAA89653.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 83
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 61/73 (83%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMKNDKE GTL GFDD+VNM+LEDVTE++ + G ++ KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDYS--GSQV-KL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 PKILLNGNNVCML 72
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMKNDKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTE 49
>gi|134105981|ref|XP_778001.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260704|gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 58/78 (74%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
ST+LPLELVD+CIGS I ++MKN++E GTL GFDD+VNM+L+DV EYE T G T L
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDL 62
Query: 174 DQILLNGNNITMLGLHTH 191
LLNGNNI M+ TH
Sbjct: 63 GDTLLNGNNIAMVRTTTH 80
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ST+LPLELVD+CIGS I ++MKN++E GTL GFDD+VNM+L+DV +
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKE 49
>gi|84998502|ref|XP_953972.1| (U6) snRNA-associated Sm-like protein [Theileria annulata]
gi|65304970|emb|CAI73295.1| (U6) snRNA-associated Sm-like protein, putative [Theileria
annulata]
Length = 90
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 58/73 (79%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ LPL L+DKC+GS+I IIMKNDKEI GTL GFDD++NM+LEDV +Y + +G + T+L
Sbjct: 8 AVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTEL 67
Query: 174 DQILLNGNNITML 186
+ L+NGNN+ ML
Sbjct: 68 NDALVNGNNVAML 80
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ LPL L+DKC+GS+I IIMKNDKEI GTL GFDD++NM+LEDV D
Sbjct: 8 AVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVD 54
>gi|403221170|dbj|BAM39303.1| uncharacterized protein TOT_010000762 [Theileria orientalis strain
Shintoku]
Length = 90
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ LPL L+DKC+GS+I IIMKNDKEI GTL GFDD++NM+LEDV +Y T EG R T+L
Sbjct: 8 AVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYTYTAEGVRTTEL 67
Query: 174 DQILLNGNNITML 186
L+NGN I ML
Sbjct: 68 PDALVNGNYIAML 80
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ LPL L+DKC+GS+I IIMKNDKEI GTL GFDD++NM+LEDV D
Sbjct: 8 AVYLPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVD 54
>gi|71003313|ref|XP_756337.1| hypothetical protein UM00190.1 [Ustilago maydis 521]
gi|46096342|gb|EAK81575.1| hypothetical protein UM00190.1 [Ustilago maydis 521]
Length = 117
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 15/87 (17%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVN--------------MLLEDVTE 160
T+LPLEL+DKCIGS I +IMK D+E GTL GFDD+VN M+LEDVTE
Sbjct: 21 TILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNAMIDNHSSLAVHADMVLEDVTE 80
Query: 161 YESTPEG-RRITKLDQILLNGNNITML 186
YE+TP+G ++ TKL Q LLNGNNI ML
Sbjct: 81 YETTPDGKKKKTKLGQTLLNGNNICML 107
Score = 63.2 bits (152), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%), Gaps = 14/60 (23%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVN--------------MLLEDVTD 57
T+LPLEL+DKCIGS I +IMK D+E GTL GFDD+VN M+LEDVT+
Sbjct: 21 TILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNAMIDNHSSLAVHADMVLEDVTE 80
>gi|58258057|ref|XP_566441.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57222578|gb|AAW40622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 216
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 58/78 (74%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
ST+LPLELVD+CIGS I ++MKN++E GTL GFDD+VNM+L+DV EYE T G T L
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDL 62
Query: 174 DQILLNGNNITMLGLHTH 191
LLNGNNI M+ TH
Sbjct: 63 GDTLLNGNNIAMVRTTTH 80
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ST+LPLELVD+CIGS I ++MKN++E GTL GFDD+VNM+L+DV +
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKE 49
>gi|367025621|ref|XP_003662095.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila ATCC
42464]
gi|347009363|gb|AEO56850.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila ATCC
42464]
Length = 85
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFAGTLVGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 KKILLNGNNICML 72
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFAGTLVGFDDYVNMVLEDVTE 49
>gi|261190750|ref|XP_002621784.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis SLH14081]
gi|239591207|gb|EEQ73788.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis SLH14081]
gi|239614892|gb|EEQ91879.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
gi|327352333|gb|EGE81190.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 84
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ T G + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFAGTLLGFDDYVNMVLEDVTEFDYT--GAQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFAGTLLGFDDYVNMVLEDVTE 49
>gi|327292284|ref|XP_003230850.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Anolis carolinensis]
Length = 56
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/55 (83%), Positives = 50/55 (90%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|121711305|ref|XP_001273268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
gi|119401419|gb|EAW11842.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
Length = 83
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 61/73 (83%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVTE++ + G +I KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS--GAQI-KL 59
Query: 174 DQILLNGNNITML 186
++ILLNGNN+ ML
Sbjct: 60 NKILLNGNNVCML 72
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|16944624|emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Neurospora
crassa]
Length = 84
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFAGTLVGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 KKILLNGNNICML 72
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFAGTLVGFDDYVNMVLEDVTE 49
>gi|328772543|gb|EGF82581.1| hypothetical protein BATDEDRAFT_9366, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 69
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILL 178
+ELVD+C+GS++ +IMK DKE GTL GFDDFVNM+LEDVTEYE T G R DQ+LL
Sbjct: 1 VELVDRCVGSKLWVIMKGDKEFTGTLLGFDDFVNMVLEDVTEYEMTSTGIRTEHFDQLLL 60
Query: 179 NGNNITML 186
NGNNI M+
Sbjct: 61 NGNNICMV 68
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 37/42 (88%)
Query: 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ELVD+C+GS++ +IMK DKE GTL GFDDFVNM+LEDVT+
Sbjct: 1 VELVDRCVGSKLWVIMKGDKEFTGTLLGFDDFVNMVLEDVTE 42
>gi|340522327|gb|EGR52560.1| predicted protein [Trichoderma reesei QM6a]
Length = 84
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYT---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|302421256|ref|XP_003008458.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261351604|gb|EEY14032.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|346974640|gb|EGY18092.1| hypothetical protein VDAG_08426 [Verticillium dahliae VdLs.17]
Length = 80
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVTE++ + G+ + KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLTGFDDYVNMVLEDVTEFDYS--GQHV-KL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLTGFDDYVNMVLEDVTE 49
>gi|336473000|gb|EGO61160.1| hypothetical protein NEUTE1DRAFT_116005 [Neurospora tetrasperma
FGSC 2508]
gi|350293750|gb|EGZ74835.1| putative U6 SNRNA-associated SM-LIKE protein LSM5 [Neurospora
tetrasperma FGSC 2509]
gi|380092260|emb|CCC10036.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 84
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 KKILLNGNNICML 72
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|345567853|gb|EGX50755.1| hypothetical protein AOL_s00054g841 [Arthrobotrys oligospora ATCC
24927]
Length = 81
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 61/73 (83%), Gaps = 4/73 (5%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLELVDKC+GS+I ++MK++KE GTL GFDD+VNM+LEDVTEY++ G +I KL
Sbjct: 3 SQILPLELVDKCVGSKIWVVMKSEKEFSGTLVGFDDYVNMVLEDVTEYDA---GEQI-KL 58
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 59 KKILLNGNNICML 71
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLELVDKC+GS+I ++MK++KE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQILPLELVDKCVGSKIWVVMKSEKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|295657072|ref|XP_002789110.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284564|gb|EEH40130.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ T G + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYT--GAQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 PKILLNGNNVCML 72
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|453082042|gb|EMF10090.1| like-Sm ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 81
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVTEY+ T TKL
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLMGFDDFVNMVLEDVTEYDYTGAH---TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 KKILLNGNNVAML 72
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVT+
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLMGFDDFVNMVLEDVTE 49
>gi|115395198|ref|XP_001213486.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193055|gb|EAU34755.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 83
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 58/75 (77%), Gaps = 7/75 (9%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE--YESTPEGRRIT 171
S LLPLEL+DKC+GSRI +IMKNDKE GTL GFDD+VNM+LEDVTE Y T E
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYSGTQE----- 57
Query: 172 KLDQILLNGNNITML 186
KL +ILLNGNN+ ML
Sbjct: 58 KLPKILLNGNNVCML 72
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMKNDKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|358392255|gb|EHK41659.1| hypothetical protein TRIATDRAFT_250596 [Trichoderma atroviride IMI
206040]
Length = 84
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLMGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLMGFDDYVNMVLEDVTE 49
>gi|327304591|ref|XP_003236987.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326459985|gb|EGD85438.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 84
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I I+MK DKE GTL GFDD+VNM+LEDVTE++ + G + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYS--GGQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 SKILLNGNNVCML 72
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 47/63 (74%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASD 70
S LLPLEL+DKC+GS+I I+MK DKE GTL GFDD+VNM+LEDVT+ S + +
Sbjct: 3 SQLLPLELIDKCVGSKIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYSGGQTKLSKI 62
Query: 71 LIN 73
L+N
Sbjct: 63 LLN 65
>gi|407921630|gb|EKG14771.1| hypothetical protein MPH_08046 [Macrophomina phaseolina MS6]
Length = 83
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ +G + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDY--QGNQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 SKILLNGNNICML 72
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|342878459|gb|EGU79796.1| hypothetical protein FOXB_09655 [Fusarium oxysporum Fo5176]
gi|408388349|gb|EKJ68035.1| hypothetical protein FPSE_11846 [Fusarium pseudograminearum CS3096]
Length = 83
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|70987204|ref|XP_749081.1| small nuclear ribonucleoprotein (LSM5) [Aspergillus fumigatus
Af293]
gi|66846711|gb|EAL87043.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus Af293]
gi|159123148|gb|EDP48268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVTE++ + G ++ KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS--GAQV-KL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|452980574|gb|EME80335.1| hypothetical protein MYCFIDRAFT_89886 [Pseudocercospora fijiensis
CIRAD86]
Length = 81
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVTEY+ T TKL
Sbjct: 3 TQLLPLELIDRCVGSPIWVIMKGDKEFSGTLQGFDDFVNMVLEDVTEYDYTGAH---TKL 59
Query: 174 DQILLNGNNITML 186
++ILLNGNNI ML
Sbjct: 60 NKILLNGNNICML 72
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVT+
Sbjct: 3 TQLLPLELIDRCVGSPIWVIMKGDKEFSGTLQGFDDFVNMVLEDVTE 49
>gi|302909361|ref|XP_003050056.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730993|gb|EEU44343.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 83
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|255953479|ref|XP_002567492.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589203|emb|CAP95343.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 83
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM++EDVTE++ T G +I KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVMEDVTEFDYT--GAQI-KL 59
Query: 174 DQILLNGNNITML 186
++LLNGNNI ML
Sbjct: 60 PKLLLNGNNICML 72
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM++EDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVMEDVTE 49
>gi|449295361|gb|EMC91383.1| hypothetical protein BAUCODRAFT_127288 [Baudoinia compniacensis
UAMH 10762]
Length = 83
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 59/73 (80%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVTEY+ + G + TKL
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYS--GAQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASD 70
S LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVT+ S +
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYSGAQTKLPKI 62
Query: 71 LIN 73
L+N
Sbjct: 63 LLN 65
>gi|398394357|ref|XP_003850637.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici IPO323]
gi|339470516|gb|EGP85613.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici IPO323]
Length = 81
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVTEY+ + G + TKL
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYS--GAQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 PKILLNGNNVAML 72
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASD 70
S LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVT+ S +
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYSGAQTKLPKI 62
Query: 71 LIN 73
L+N
Sbjct: 63 LLN 65
>gi|315045688|ref|XP_003172219.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
gi|311342605|gb|EFR01808.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
Length = 84
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ + G + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS--GGQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 SKILLNGNNVCML 72
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 47/63 (74%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASD 70
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+ S + +
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGGQTKLSKI 62
Query: 71 LIN 73
L+N
Sbjct: 63 LLN 65
>gi|400596491|gb|EJP64262.1| putative U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Beauveria
bassiana ARSEF 2860]
Length = 82
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK +KE GTL GFDD+VNM+LEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFDYT---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK +KE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTE 49
>gi|321250537|ref|XP_003191841.1| hypothetical protein CGB_B0090W [Cryptococcus gattii WM276]
gi|317458309|gb|ADV20054.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 122
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 55/73 (75%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
ST+LPLELVD+CIGS I ++MKN++E GTL GFDD+VNM+L+DV EYE T G T
Sbjct: 2 ASTILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETD 61
Query: 173 LDQILLNGNNITM 185
L LLNGNNI M
Sbjct: 62 LGDTLLNGNNIAM 74
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 10 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ST+LPLELVD+CIGS I ++MKN++E GTL GFDD+VNM+L+DV +
Sbjct: 2 ASTILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKE 49
>gi|378725612|gb|EHY52071.1| U6 snRNA-associated Sm-like protein LSm5 [Exophiala dermatitidis
NIH/UT8656]
Length = 84
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 59/73 (80%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI ++MK DK+ GTL GFDD+VNM+LEDV E++ T G + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKDFAGTLLGFDDYVNMVLEDVIEFDYT--GAQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI ++MK DK+ GTL GFDD+VNM+LEDV +
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKDFAGTLLGFDDYVNMVLEDVIE 49
>gi|320032480|gb|EFW14433.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 84
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK D+E GTL GFDD+VNM+LEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYT---AAQTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 PKILLNGNNVCML 72
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GS+I ++MK D+E GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTE 49
>gi|380474440|emb|CCF45778.1| U6 snRNA-associated Sm-like protein LSm5 [Colletotrichum
higginsianum]
Length = 82
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|403411591|emb|CCL98291.1| predicted protein [Fibroporia radiculosa]
Length = 600
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
GSRI +IMK+++E GTL GFDDFVNM+LEDVTEYE TP+GR+ TKL Q LLNGNNI M
Sbjct: 530 FGSRIWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEITPQGRKATKLAQTLLNGNNICM 589
Query: 186 L 186
L
Sbjct: 590 L 590
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 23 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
GSRI +IMK+++E GTL GFDDFVNM+LEDVT+
Sbjct: 530 FGSRIWVIMKSEREFTGTLLGFDDFVNMVLEDVTE 564
>gi|392867674|gb|EAS29072.2| U6 snRNA-associated Sm-like protein LSm5 [Coccidioides immitis RS]
Length = 84
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK D+E GTL GFDD+VNM+LEDVTE++ T G + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYT--GAQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 PKILLNGNNVCML 72
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GS+I ++MK D+E GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTE 49
>gi|310792345|gb|EFQ27872.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 82
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 AQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 SKILLNGNNICML 72
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ LLPLEL+DKC+GSRI ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 AQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|358389647|gb|EHK27239.1| hypothetical protein TRIVIDRAFT_73167 [Trichoderma virens Gv29-8]
Length = 84
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 PKILLNGNNICML 72
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|296805413|ref|XP_002843531.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238844833|gb|EEQ34495.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 84
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+D+C+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ + G + TKL
Sbjct: 3 SQLLPLELIDRCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS--GGQ-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 SKILLNGNNVCML 72
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASD 70
S LLPLEL+D+C+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+ S + +
Sbjct: 3 SQLLPLELIDRCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGGQTKLSKI 62
Query: 71 LIN 73
L+N
Sbjct: 63 LLN 65
>gi|154303271|ref|XP_001552043.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347841641|emb|CCD56213.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Botryotinia
fuckeliana]
Length = 84
Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDV E++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGSQ--TKL 60
Query: 174 DQILLNGNNITML 186
+ILLNGN I ML
Sbjct: 61 PKILLNGNGIAML 73
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC-HDSHLLSYFAS 69
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDV + H S +
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGSQTKLPK 62
Query: 70 DLINFIWGLPMITP 83
L+N G+ M+ P
Sbjct: 63 ILLNGN-GIAMLVP 75
>gi|440465859|gb|ELQ35159.1| hypothetical protein OOU_Y34scaffold00725g17 [Magnaporthe oryzae
Y34]
Length = 82
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ LLPLEL+DKC+GSRI +IMK DKE G L GFDD+VNM+LEDVTE++ + TK+
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYS---GNYTKM 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 SKILLNGNNICML 72
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 46/63 (73%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASD 70
+ LLPLEL+DKC+GSRI +IMK DKE G L GFDD+VNM+LEDVT+ S + +
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNYTKMSKI 62
Query: 71 LIN 73
L+N
Sbjct: 63 LLN 65
>gi|346325284|gb|EGX94881.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 83
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK +KE GTL GFDD+VNM+LEDVTE+ S G TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEF-SDYTGNH-TKL 60
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 61 PKILLNGNNICML 73
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
S LLPLEL+DKC+GSRI +IMK +KE GTL GFDD+VNM+LEDVT+ D
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFSD 52
>gi|452837763|gb|EME39705.1| hypothetical protein DOTSEDRAFT_75376 [Dothistroma septosporum
NZE10]
Length = 80
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/73 (67%), Positives = 59/73 (80%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVTE++ T G + TKL
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEHDYT--GAK-TKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 PKILLNGNNVCML 72
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%), Gaps = 1/50 (2%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
S LLPLEL+D+C+GS I +IMK DKE GTL GFDDFVNM+LEDVT+ HD
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTE-HD 51
>gi|156053688|ref|XP_001592770.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia sclerotiorum
1980]
gi|154703472|gb|EDO03211.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia sclerotiorum
1980 UF-70]
Length = 84
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDV E++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGNQ--TKL 60
Query: 174 DQILLNGNNITML 186
+ILLNGN I ML
Sbjct: 61 PKILLNGNGIAML 73
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC-HDSHLLSYFAS 69
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDV + H S +
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGNQTKLPK 62
Query: 70 DLINFIWGLPMITP 83
L+N G+ M+ P
Sbjct: 63 ILLNGN-GIAMLVP 75
>gi|402081161|gb|EJT76306.1| U6 snRNA-associated Sm-like protein LSm5 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 82
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ LLPLEL+DKC+GSRI +IMK DKE G L GFDD+VNM+LEDVTE++ + TKL
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYS---GNHTKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 SKILLNGNNICML 72
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ LLPLEL+DKC+GSRI +IMK DKE G L GFDD+VNM+LEDVT+
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTE 49
>gi|320592276|gb|EFX04715.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 80
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 60/73 (82%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GSRI +IMK ++E GTL GFDD+VNM+LE+VTE++ + G+ TK+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEREFSGTLVGFDDYVNMVLEEVTEFDYSG-GQ--TKM 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 SKILLNGNNICML 72
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 47/63 (74%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASD 70
S LLPLEL+DKC+GSRI +IMK ++E GTL GFDD+VNM+LE+VT+ S + +
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEREFSGTLVGFDDYVNMVLEEVTEFDYSGGQTKMSKI 62
Query: 71 LIN 73
L+N
Sbjct: 63 LLN 65
>gi|399218089|emb|CCF74976.1| unnamed protein product [Babesia microti strain RI]
Length = 87
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 54/70 (77%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL LVDKCIG+R+ IIMKNDKE+ G L GFDD++NM +DV EY +P+G + +D+
Sbjct: 11 LPLALVDKCIGNRMWIIMKNDKELDGILCGFDDYMNMASKDVKEYTYSPQGHTVENIDKC 70
Query: 177 LLNGNNITML 186
LLNGNNI ML
Sbjct: 71 LLNGNNIVML 80
Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
LPL LVDKCIG+R+ IIMKNDKE+ G L GFDD++NM +DV +
Sbjct: 11 LPLALVDKCIGNRMWIIMKNDKELDGILCGFDDYMNMASKDVKE 54
>gi|212532417|ref|XP_002146365.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
gi|210071729|gb|EEA25818.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
Length = 83
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ G + KL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYA--GNQ-EKL 59
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 60 PKILLNGNNVCML 72
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 49
>gi|389623205|ref|XP_003709256.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae 70-15]
gi|351648785|gb|EHA56644.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae 70-15]
gi|440486474|gb|ELQ66335.1| hypothetical protein OOW_P131scaffold00400g22 [Magnaporthe oryzae
P131]
Length = 82
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 57/73 (78%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ LLPLEL+DKC+GSRI +IMK DKE G L GFDD+VNM+LEDVTE++ + TK+
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYS---GNHTKM 59
Query: 174 DQILLNGNNITML 186
+ILLNGNNI ML
Sbjct: 60 SKILLNGNNICML 72
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ LLPLEL+DKC+GSRI +IMK DKE G L GFDD+VNM+LEDVT+
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTE 49
>gi|290999453|ref|XP_002682294.1| predicted protein [Naegleria gruberi]
gi|284095921|gb|EFC49550.1| predicted protein [Naegleria gruberi]
Length = 103
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 58/72 (80%), Gaps = 2/72 (2%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG--RRITKLDQ 175
PLEL+DKCIGS I ++MK+DKE+VGTL GFDD++NM+L++VTEY + +G R +KL
Sbjct: 15 PLELIDKCIGSSIFVLMKDDKELVGTLRGFDDYINMILDNVTEYSYSEDGSSRTESKLPS 74
Query: 176 ILLNGNNITMLG 187
I+LNGNN+ +L
Sbjct: 75 IILNGNNVAILA 86
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 40/43 (93%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PLEL+DKCIGS I ++MK+DKE+VGTL GFDD++NM+L++VT+
Sbjct: 15 PLELIDKCIGSSIFVLMKDDKELVGTLRGFDDYINMILDNVTE 57
>gi|323449072|gb|EGB04963.1| hypothetical protein AURANDRAFT_9330 [Aureococcus anophagefferens]
Length = 72
Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 57/71 (80%), Gaps = 7/71 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
LLPLELVDKCIGSRI +IMK DKE+VGTL GFD++V L+DVTEY + T+LDQ
Sbjct: 2 LLPLELVDKCIGSRIWVIMKGDKEVVGTLRGFDEYV---LDDVTEYCDGAK----TQLDQ 54
Query: 176 ILLNGNNITML 186
ILLNGNN++M+
Sbjct: 55 ILLNGNNVSMM 65
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 40/49 (81%), Gaps = 3/49 (6%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
LLPLELVDKCIGSRI +IMK DKE+VGTL GFD++V L+DVT+ D
Sbjct: 2 LLPLELVDKCIGSRIWVIMKGDKEVVGTLRGFDEYV---LDDVTEYCDG 47
>gi|46124883|ref|XP_386995.1| hypothetical protein FG06819.1 [Gibberella zeae PH-1]
Length = 89
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 58/79 (73%), Gaps = 9/79 (11%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDK------EIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
S LLPLEL+DKC+GSRI +IMK DK E GTL GFDD+VNM+LEDVTE++ +
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKGKMSLAEFSGTLVGFDDYVNMVLEDVTEFDYS--- 59
Query: 168 RRITKLDQILLNGNNITML 186
TKL +ILLNGNNI ML
Sbjct: 60 GNHTKLPKILLNGNNICML 78
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 41/53 (77%), Gaps = 6/53 (11%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDK------EIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL+DKC+GSRI +IMK DK E GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKGKMSLAEFSGTLVGFDDYVNMVLEDVTE 55
>gi|440632020|gb|ELR01939.1| hypothetical protein GMDG_05112 [Geomyces destructans 20631-21]
Length = 227
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
T L +EL+D+C+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ T
Sbjct: 131 TPACALTEIELIDRCVGSKIWVVMKTDKEFTGTLTGFDDYVNMVLEDVTEFDYTGA---T 187
Query: 171 TKLDQILLNGNNITM 185
TK+++ILLNGNNI M
Sbjct: 188 TKMEKILLNGNNICM 202
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 39/50 (78%)
Query: 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T L +EL+D+C+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 131 TPACALTEIELIDRCVGSKIWVVMKTDKEFTGTLTGFDDYVNMVLEDVTE 180
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 68/101 (67%), Gaps = 11/101 (10%)
Query: 97 LTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 156
++ + + ++ T STLLPL L+DKCIGSRI+II++ D+EI GTL GFD++VNM+L+
Sbjct: 1 MSESIMNQSQNTLRTTHSTLLPLALIDKCIGSRIYIILRGDREISGTLRGFDEYVNMVLD 60
Query: 157 DVTEY---------ESTPEGRR--ITKLDQILLNGNNITML 186
+V EY S + +R + +LD ILL+GNNI +L
Sbjct: 61 EVEEYGYTIVMNESASNKKLKRVLVNRLDTILLSGNNIALL 101
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 52/66 (78%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLL 64
++ T STLLPL L+DKCIGSRI+II++ D+EI GTL GFD++VNM+L++V + + ++
Sbjct: 12 TLRTTHSTLLPLALIDKCIGSRIYIILRGDREISGTLRGFDEYVNMVLDEVEEYGYTIVM 71
Query: 65 SYFASD 70
+ AS+
Sbjct: 72 NESASN 77
>gi|323446815|gb|EGB02847.1| hypothetical protein AURANDRAFT_9792 [Aureococcus anophagefferens]
Length = 95
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 24/91 (26%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNM--------------------LL 155
LLPLELVDKCIGSRI +IMK DKE+VGTL GFD++VNM +L
Sbjct: 2 LLPLELVDKCIGSRIWVIMKGDKEVVGTLRGFDEYVNMAPRRRPPHPPTPRAERRGPQVL 61
Query: 156 EDVTEYESTPEGRRITKLDQILLNGNNITML 186
+DVTEY + T+LDQILLNGNN++M+
Sbjct: 62 DDVTEYCDGAK----TQLDQILLNGNNVSMM 88
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNM 50
LLPLELVDKCIGSRI +IMK DKE+VGTL GFD++VNM
Sbjct: 2 LLPLELVDKCIGSRIWVIMKGDKEVVGTLRGFDEYVNM 39
>gi|326472938|gb|EGD96947.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS 112818]
gi|326477364|gb|EGE01374.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 83
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 56/68 (82%), Gaps = 3/68 (4%)
Query: 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILL 178
+EL+DKC+GS+I I+MK DKE GTL GFDD+VNM+LEDVTE++ + G + TKL +ILL
Sbjct: 7 VELIDKCVGSKIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYS--GGQ-TKLSKILL 63
Query: 179 NGNNITML 186
NGNN+ ML
Sbjct: 64 NGNNVCML 71
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 37/42 (88%)
Query: 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+EL+DKC+GS+I I+MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 7 VELIDKCVGSKIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTE 48
>gi|156086956|ref|XP_001610885.1| snRNP Sm-like protein [Babesia bovis T2Bo]
gi|154798138|gb|EDO07317.1| snRNP Sm-like protein, putative [Babesia bovis]
Length = 87
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL LVDKC+G+++ IIMK +KEI G L GFDD++N++L+DVTEY P G T+L
Sbjct: 11 LPLALVDKCLGTKVWIIMKGEKEITGVLRGFDDYMNVVLDDVTEYTFKPTGVETTELKDA 70
Query: 177 LLNGNNITML 186
L+NG NI M+
Sbjct: 71 LVNGTNIAMI 80
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 38/44 (86%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
LPL LVDKC+G+++ IIMK +KEI G L GFDD++N++L+DVT+
Sbjct: 11 LPLALVDKCLGTKVWIIMKGEKEITGVLRGFDDYMNVVLDDVTE 54
>gi|195588134|ref|XP_002083813.1| GD13932 [Drosophila simulans]
gi|194195822|gb|EDX09398.1| GD13932 [Drosophila simulans]
Length = 55
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/47 (89%), Positives = 46/47 (97%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+VGTL GFDDFVNMLL+DVTEYE+TP+GRRITKLDQILLNGNNITML
Sbjct: 1 MVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITML 47
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 37 IVGTLNGFDDFVNMLLEDVTDCHDS 61
+VGTL GFDDFVNMLL+DVT+ ++
Sbjct: 1 MVGTLLGFDDFVNMLLDDVTEYENT 25
>gi|340506197|gb|EGR32392.1| lsm5 protein, putative [Ichthyophthirius multifiliis]
Length = 83
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 56/72 (77%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T+LPLEL+DKCIG +I I++KN+KE+VGTL GFDDF NM+L++ EY+ + T +D
Sbjct: 5 TILPLELIDKCIGHKIWILLKNNKEVVGTLRGFDDFFNMVLDEAKEYQFQNGIKNQTNID 64
Query: 175 QILLNGNNITML 186
ILLNG +IT++
Sbjct: 65 SILLNGAHITLI 76
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 40/46 (86%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIG +I I++KN+KE+VGTL GFDDF NM+L++ +
Sbjct: 5 TILPLELIDKCIGHKIWILLKNNKEVVGTLRGFDDFFNMVLDEAKE 50
>gi|301107352|ref|XP_002902758.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097876|gb|EEY55928.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 62
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
MK DKE +GTL GFDD+VNM+L+DVTEYE TPEG+R KLDQ+LLNGNN+ +L
Sbjct: 1 MKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEGKREVKLDQVLLNGNNVCLL 53
Score = 45.4 bits (106), Expect = 0.012, Method: Composition-based stats.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 31 MKNDKEIVGTLNGFDDFVNMLLEDVTD 57
MK DKE +GTL GFDD+VNM+L+DVT+
Sbjct: 1 MKGDKEFLGTLRGFDDYVNMVLDDVTE 27
>gi|154275866|ref|XP_001538778.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413851|gb|EDN09216.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 104
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 60/93 (64%), Gaps = 23/93 (24%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDK--------------------EIVGTLNGFDDFVNM 153
S LLPLEL+DKC+GS+I ++MK DK E GTL GFDD+VNM
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKGEEELGSDISPFLSSLTSNSEFSGTLLGFDDYVNM 62
Query: 154 LLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+LEDVTE++ T G + TKL +ILLNGNNI ML
Sbjct: 63 VLEDVTEFDYT--GSQ-TKLSKILLNGNNICML 92
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 20/67 (29%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDK--------------------EIVGTLNGFDDFVNM 50
S LLPLEL+DKC+GS+I ++MK DK E GTL GFDD+VNM
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKGEEELGSDISPFLSSLTSNSEFSGTLLGFDDYVNM 62
Query: 51 LLEDVTD 57
+LEDVT+
Sbjct: 63 VLEDVTE 69
>gi|396458116|ref|XP_003833671.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Leptosphaeria
maculans JN3]
gi|312210219|emb|CBX90306.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Leptosphaeria
maculans JN3]
Length = 84
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
LLPLEL+DKC+GS+I +IM KE G L GFDD+VNM+LEDVTE +++ EG KL
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEDVTEIDAS-EGN--VKL 60
Query: 174 DQILLNGNNITML 186
+ILLNGNNI M+
Sbjct: 61 PKILLNGNNICMM 73
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 38/52 (73%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
LLPLEL+DKC+GS+I +IM KE G L GFDD+VNM+LEDVT+ S
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEDVTEIDASE 55
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 61/82 (74%), Gaps = 5/82 (6%)
Query: 107 PSVATNP-STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST- 164
P+ +P ST+LPLE++DK IG +I ++M NDKE GTL GFDD+VNM+LE+V E+++
Sbjct: 11 PAAGESPLSTILPLEIIDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEFDNEG 70
Query: 165 PEGRRITKLDQILLNGNNITML 186
P+G+ I K+ LLNG+ + ML
Sbjct: 71 PKGKVIKKM---LLNGSQVAML 89
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 4 PSVATNP-STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
P+ +P ST+LPLE++DK IG +I ++M NDKE GTL GFDD+VNM+LE+V +
Sbjct: 11 PAAGESPLSTILPLEIIDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEE 65
>gi|148672765|gb|EDL04712.1| mCG13108, isoform CRA_c [Mus musculus]
Length = 59
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/51 (76%), Positives = 45/51 (88%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFV++L +
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSILFK 52
Score = 84.0 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/51 (76%), Positives = 45/51 (88%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 156
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFV++L +
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSILFK 52
>gi|412991139|emb|CCO15984.1| predicted protein [Bathycoccus prasinos]
Length = 97
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
+ NPS LLP ELVDKC+ ++ IIMKN KE GTL GFD +VN +LED EY+ E
Sbjct: 9 AAPNNPSLLLPSELVDKCVNEKVWIIMKNGHKEFTGTLKGFDVYVNCVLEDAIEYDRDQE 68
Query: 167 -GRRITK-LDQILLNGNNITML 186
G+ TK L+ ILLNGNNI M+
Sbjct: 69 SGKETTKNLESILLNGNNICMI 90
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTD 57
+ NPS LLP ELVDKC+ ++ IIMKN KE GTL GFD +VN +LED +
Sbjct: 9 AAPNNPSLLLPSELVDKCVNEKVWIIMKNGHKEFTGTLKGFDVYVNCVLEDAIE 62
>gi|149033254|gb|EDL88055.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_b [Rattus norvegicus]
Length = 59
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 44/50 (88%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 52
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFV++L
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSILF 51
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 44/50 (88%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 155
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFV++L
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSILF 51
>gi|242775508|ref|XP_002478658.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722277|gb|EED21695.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
Length = 105
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 3/70 (4%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
L EL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVTE++ KL +I
Sbjct: 28 LKQELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYAGNQE---KLPKI 84
Query: 177 LLNGNNITML 186
LLNGNN+ ML
Sbjct: 85 LLNGNNVCML 94
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
L EL+DKC+GS+I ++MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 28 LKQELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTE 71
>gi|149033256|gb|EDL88057.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_d [Rattus norvegicus]
Length = 59
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 46/58 (79%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFV L + E ++
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVMKLHQKEEELQN 59
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/46 (82%), Positives = 41/46 (89%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFV 48
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFV
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFV 47
>gi|213403610|ref|XP_002172577.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
gi|212000624|gb|EEB06284.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
Length = 79
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 54/72 (75%), Gaps = 2/72 (2%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T+LPLEL+DKCIGS + +IMK +KE VGTL GFDD+VNM+L+DVTE ++ K
Sbjct: 4 TILPLELIDKCIGSNLWVIMKGEKEFVGTLVGFDDYVNMVLKDVTEIDTITNVTEQHK-- 61
Query: 175 QILLNGNNITML 186
+ILLNGN I ML
Sbjct: 62 EILLNGNGICML 73
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 41/46 (89%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIGS + +IMK +KE VGTL GFDD+VNM+L+DVT+
Sbjct: 4 TILPLELIDKCIGSNLWVIMKGEKEFVGTLVGFDDYVNMVLKDVTE 49
>gi|66363282|ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gi|90109709|pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|90109710|pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|321159967|pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|321159968|pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|46229827|gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
Length = 121
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 12/83 (14%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY------ESTPEGRR 169
+LPL L+DKCIG+RI+++MK DKE G L GFD++VNM+L+DV EY E G +
Sbjct: 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNK 86
Query: 170 ------ITKLDQILLNGNNITML 186
+ +L+ ILL+GNN+ ML
Sbjct: 87 KLKRVMVNRLETILLSGNNVAML 109
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 38/45 (84%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPL L+DKCIG+RI+++MK DKE G L GFD++VNM+L+DV +
Sbjct: 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQE 71
>gi|67601363|ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gi|54657379|gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis]
Length = 115
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 12/83 (14%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY------ESTPEGRR 169
+LPL L+DKCIG+RI+++MK DKE G L GFD++VNM+L+DV EY E G +
Sbjct: 21 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDMSGGNK 80
Query: 170 ------ITKLDQILLNGNNITML 186
+ +L+ ILL+GNN+ ML
Sbjct: 81 KLKRVMVNRLETILLSGNNVAML 103
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 38/45 (84%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPL L+DKCIG+RI+++MK DKE G L GFD++VNM+L+DV +
Sbjct: 21 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQE 65
>gi|169601618|ref|XP_001794231.1| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
gi|160705976|gb|EAT88882.2| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
Length = 86
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
LLPLEL+DKC+GS+I +IM KE G L GFDD+VNM+LE+VTE + EG KL
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEIDPA-EGN--VKL 60
Query: 174 DQILLNGNNITML 186
+ILLNGNNI M+
Sbjct: 61 PKILLNGNNICMM 73
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 37/47 (78%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
LLPLEL+DKC+GS+I +IM KE G L GFDD+VNM+LE+VT+
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTE 50
>gi|339260352|ref|XP_003368450.1| putative LSM domain protein [Trichinella spiralis]
gi|316964864|gb|EFV49782.1| putative LSM domain protein [Trichinella spiralis]
Length = 62
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 47/53 (88%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
MK +KE+VGTL GFDD+VN++LEDV EYE+T EG+RIT+LDQILLNG +I ML
Sbjct: 1 MKGNKELVGTLLGFDDYVNIVLEDVIEYETTTEGKRITRLDQILLNGTHIAML 53
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 31 MKNDKEIVGTLNGFDDFVNMLLEDVTD 57
MK +KE+VGTL GFDD+VN++LEDV +
Sbjct: 1 MKGNKELVGTLLGFDDYVNIVLEDVIE 27
>gi|354459632|pdb|3SWN|A Chain A, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459635|pdb|3SWN|D Chain D, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459638|pdb|3SWN|P Chain P, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459641|pdb|3SWN|S Chain S, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
Length = 82
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T+LPLEL+DKCIGS + +IMK+++E GTL GFDD+VN++L+DVTEY++ K
Sbjct: 6 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT--GVTEKHS 63
Query: 175 QILLNGNNITML 186
++LLNGN + ML
Sbjct: 64 EMLLNGNGMCML 75
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 41/46 (89%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIGS + +IMK+++E GTL GFDD+VN++L+DVT+
Sbjct: 6 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE 51
>gi|325187598|emb|CCA22134.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 67
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 44/53 (83%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
M+ DKE VGTL GFDD+VNM+L+DVTE+E TP G+R LDQ+LLNGNN+ ML
Sbjct: 1 MQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSGKRQIALDQVLLNGNNVCML 53
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 31 MKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M+ DKE VGTL GFDD+VNM+L+DVT+
Sbjct: 1 MQGDKEFVGTLRGFDDYVNMVLDDVTE 27
>gi|19113165|ref|NP_596373.1| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626712|sp|O42978.2|LSM5_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|4539252|emb|CAA16849.2| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe]
Length = 80
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T+LPLEL+DKCIGS + +IMK+++E GTL GFDD+VN++L+DVTEY++ K
Sbjct: 4 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT--GVTEKHS 61
Query: 175 QILLNGNNITML 186
++LLNGN + ML
Sbjct: 62 EMLLNGNGMCML 73
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 41/46 (89%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIGS + +IMK+++E GTL GFDD+VN++L+DVT+
Sbjct: 4 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE 49
>gi|451848655|gb|EMD61960.1| hypothetical protein COCSADRAFT_147219 [Cochliobolus sativus
ND90Pr]
gi|451998469|gb|EMD90933.1| hypothetical protein COCHEDRAFT_1021722 [Cochliobolus
heterostrophus C5]
Length = 86
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
LLPLEL+DKC+GS+I +IM KE G L GFDD+VNM+LE+VTE + EG +L
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLENVTEIDPA-EGN--VQL 60
Query: 174 DQILLNGNNITML 186
+ILLNGNNI M+
Sbjct: 61 PKILLNGNNICMM 73
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 37/47 (78%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
LLPLEL+DKC+GS+I +IM KE G L GFDD+VNM+LE+VT+
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLENVTE 50
>gi|148672766|gb|EDL04713.1| mCG13108, isoform CRA_d [Mus musculus]
Length = 46
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/45 (82%), Positives = 40/45 (88%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDF 47
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDF
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDF 46
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/45 (82%), Positives = 40/45 (88%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDF 150
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDF
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDF 46
>gi|124809480|ref|XP_001348585.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23497482|gb|AAN37024.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
+ T LPL L+DKCIGS+I I+MK DKEIVG L GFD++VNM+LEDVTEY +++
Sbjct: 5 SGSETFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKV 64
Query: 171 TKLDQILLNGNNITML 186
K+ ++LLNG NIT++
Sbjct: 65 NKIKKLLLNGLNITIM 80
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 41/50 (82%)
Query: 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ T LPL L+DKCIGS+I I+MK DKEIVG L GFD++VNM+LEDVT+
Sbjct: 5 SGSETFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|390343618|ref|XP_003725919.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Strongylocentrotus purpuratus]
Length = 63
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNML 51
+NPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFV++L
Sbjct: 3 TSNPSHLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVSIL 47
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNML 154
+NPS LLPLELVDKCIGSRIHI+MK DKEIVGTL GFDDFV++L
Sbjct: 3 TSNPSHLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVSIL 47
>gi|170593551|ref|XP_001901527.1| U6 snRNA-associated Sm-like protein LSm5 [Brugia malayi]
gi|158590471|gb|EDP29086.1| U6 snRNA-associated Sm-like protein LSm5, putative [Brugia malayi]
Length = 65
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 45/50 (90%)
Query: 137 DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+ EIVGTL GFDD+VNM+LEDV EYE+T +G+R+TKLD ILLNGN+ITML
Sbjct: 7 EDEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKLDTILLNGNHITML 56
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 34 DKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
+ EIVGTL GFDD+VNM+LEDV + ++
Sbjct: 7 EDEIVGTLTGFDDYVNMVLEDVVEYENT 34
>gi|50546793|ref|XP_500866.1| YALI0B14058p [Yarrowia lipolytica]
gi|49646732|emb|CAG83117.1| YALI0B14058p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 2/73 (2%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLELVDKCIGS+I +++K+ E GTL GFDDFVNM+LEDVTE +T G+ T
Sbjct: 10 SQILPLELVDKCIGSKILVLVKSKVEFTGTLVGFDDFVNMVLEDVTEV-NTKTGKE-TNH 67
Query: 174 DQILLNGNNITML 186
++LL+G +I ML
Sbjct: 68 SKLLLSGKSIYML 80
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH 59
S +LPLELVDKCIGS+I +++K+ E GTL GFDDFVNM+LEDVT+ +
Sbjct: 10 SQILPLELVDKCIGSKILVLVKSKVEFTGTLVGFDDFVNMVLEDVTEVN 58
>gi|449018389|dbj|BAM81791.1| U6 snRNA-associated Sm-like protein LSm5 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
N +L PLELVD +G+R+ II++ +E G L GFD++VN+ LEDV EY + EG
Sbjct: 5 ANQPSLYPLELVDAAVGTRVWIILRGAREFCGILRGFDEYVNLFLEDVDEYTYSEEGIEK 64
Query: 171 TKLDQILLNGNNITMLG 187
+ Q+ LNG+ I +L
Sbjct: 65 QHIAQMFLNGSQICVLA 81
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
N +L PLELVD +G+R+ II++ +E G L GFD++VN+ LEDV +
Sbjct: 5 ANQPSLYPLELVDAAVGTRVWIILRGAREFCGILRGFDEYVNLFLEDVDE 54
>gi|156100461|ref|XP_001615958.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium vivax Sal-1]
gi|221059589|ref|XP_002260440.1| small nuclear ribonuclear protein [Plasmodium knowlesi strain H]
gi|148804832|gb|EDL46231.1| U6 snRNA-associated Sm-like protein LSm5, putative [Plasmodium
vivax]
gi|193810513|emb|CAQ41707.1| small nuclear ribonuclear protein, putative [Plasmodium knowlesi
strain H]
gi|389585422|dbj|GAB68153.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium cynomolgi
strain B]
Length = 101
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 59/79 (74%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
+ + T LPL L+DKCIGS+I +++K DKEIVG L GFD++VNM+LEDVTEY
Sbjct: 2 ATVSGSETFLPLALMDKCIGSKIWVMLKGDKEIVGKLVGFDEYVNMVLEDVTEYTYVNNV 61
Query: 168 RRITKLDQILLNGNNITML 186
+++ K+ ++LLNG NIT++
Sbjct: 62 KKVNKIKKLLLNGLNITIM 80
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 42/53 (79%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ + T LPL L+DKCIGS+I +++K DKEIVG L GFD++VNM+LEDVT+
Sbjct: 2 ATVSGSETFLPLALMDKCIGSKIWVMLKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T+LPLE++DK IG I ++M NDKE G L GFDDFVNM+LEDV E +S + ++ K
Sbjct: 1 TVLPLEIIDKSIGHEIRVLMTNDKEFTGKLVGFDDFVNMVLEDVREIDSDVKSDKVIK-- 58
Query: 175 QILLNGNNITML 186
++LLNG + M+
Sbjct: 59 KMLLNGGQVAMI 70
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLS 65
T+LPLE++DK IG I ++M NDKE G L GFDDFVNM+LEDV + DS + S
Sbjct: 1 TVLPLEIIDKSIGHEIRVLMTNDKEFTGKLVGFDDFVNMVLEDVREI-DSDVKS 53
>gi|219113037|ref|XP_002186102.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582952|gb|ACI65572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 94
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%), Gaps = 4/77 (5%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR-RITK 172
+ +LPLEL+DK IGS+I ++M+ KE+VGTL GFDD+VN++L++ E+ P + ++ +
Sbjct: 3 TRILPLELIDKAIGSKIWVLMRGTKEVVGTLQGFDDYVNLVLDNAVEFSPDPHDKSKVVR 62
Query: 173 LD---QILLNGNNITML 186
+ +ILLNGN I +L
Sbjct: 63 NELSCEILLNGNQIALL 79
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 4/55 (7%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT----DCHDS 61
+ +LPLEL+DK IGS+I ++M+ KE+VGTL GFDD+VN++L++ D HD
Sbjct: 3 TRILPLELIDKAIGSKIWVLMRGTKEVVGTLQGFDDYVNLVLDNAVEFSPDPHDK 57
>gi|430814458|emb|CCJ28305.1| unnamed protein product [Pneumocystis jirovecii]
Length = 50
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
+ STLLPLELVDKC+GSRI ++MK D E G L GFDD+VNM+L+DVTE
Sbjct: 2 STSTLLPLELVDKCVGSRIWVVMKGDTEFSGILLGFDDYVNMVLQDVTE 50
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ STLLPLELVDKC+GSRI ++MK D E G L GFDD+VNM+L+DVT+
Sbjct: 2 STSTLLPLELVDKCVGSRIWVVMKGDTEFSGILLGFDDYVNMVLQDVTE 50
>gi|68482073|ref|XP_715054.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
gi|46436659|gb|EAK96018.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
Length = 119
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 6/85 (7%)
Query: 102 YTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY 161
+ T S T P T+LPLE++D+ +G R+ ++M DKE G L GFDD+VNM+LEDVTE
Sbjct: 38 FLSTIMSDETVPQTVLPLEVIDRSVGKRVRVLMTGDKEFNGKLIGFDDYVNMVLEDVTEV 97
Query: 162 ESTPEGRRITKLDQILLNGNNITML 186
+ G I K+ LLNG +I M+
Sbjct: 98 DG---GAPIKKM---LLNGGHIAMI 116
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 2 TAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
T S T P T+LPLE++D+ +G R+ ++M DKE G L GFDD+VNM+LEDVT+
Sbjct: 41 TIMSDETVPQTVLPLEVIDRSVGKRVRVLMTGDKEFNGKLIGFDDYVNMVLEDVTEV 97
>gi|145489729|ref|XP_001430866.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397967|emb|CAK63468.1| unnamed protein product [Paramecium tetraurelia]
Length = 77
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+T+LPL L+DK I SR+ I+MK+D+E GTL GFDDF NM+LE+V E +G + KL
Sbjct: 2 TTILPLGLLDKAISSRVWILMKDDREFEGTLRGFDDFFNMVLENVIEL----DGGKKNKL 57
Query: 174 DQILLNGNNITML 186
+ ILLNG I ++
Sbjct: 58 ESILLNGTQICLI 70
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 38/47 (80%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+T+LPL L+DK I SR+ I+MK+D+E GTL GFDDF NM+LE+V +
Sbjct: 2 TTILPLGLLDKAISSRVWILMKDDREFEGTLRGFDDFFNMVLENVIE 48
>gi|330934258|ref|XP_003304477.1| hypothetical protein PTT_17081 [Pyrenophora teres f. teres 0-1]
gi|311318880|gb|EFQ87428.1| hypothetical protein PTT_17081 [Pyrenophora teres f. teres 0-1]
Length = 94
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 11/81 (13%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDK--------EIVGTLNGFDDFVNMLLEDVTEYESTP 165
LLPLEL+DKC+GS+I +IM K + G L GFDD+VNM+LEDVTE +
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKGRLICSHSKFTGKLVGFDDYVNMVLEDVTEIDPA- 62
Query: 166 EGRRITKLDQILLNGNNITML 186
EG KL +ILLNGNNI M+
Sbjct: 63 EGN--VKLPKILLNGNNICMM 81
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDK--------EIVGTLNGFDDFVNMLLEDVTD 57
LLPLEL+DKC+GS+I +IM K + G L GFDD+VNM+LEDVT+
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKGRLICSHSKFTGKLVGFDDYVNMVLEDVTE 58
>gi|390981167|pdb|4EMK|A Chain A, Crystal Structure Of Splsm567
Length = 94
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T+LPLEL+DKCIGS + +I K+++E GTL GFDD+VN++L+DVTEY++ K
Sbjct: 18 TILPLELIDKCIGSNLWVIXKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT--GVTEKHS 75
Query: 175 QILLNGNNITML 186
+ LLNGN L
Sbjct: 76 EXLLNGNGXCXL 87
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 40/46 (86%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIGS + +I K+++E GTL GFDD+VN++L+DVT+
Sbjct: 18 TILPLELIDKCIGSNLWVIXKSEREFAGTLVGFDDYVNIVLKDVTE 63
>gi|344228576|gb|EGV60462.1| hypothetical protein CANTEDRAFT_116517 [Candida tenuis ATCC 10573]
Length = 97
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 15/91 (16%)
Query: 109 VATNPS-------------TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 155
VATNPS T+LPLE++DK IG + +++ DKE G L GFDDFVN++L
Sbjct: 4 VATNPSVDVTGKQEEVTISTVLPLEIIDKSIGKVVTVLLTTDKEFTGKLVGFDDFVNVVL 63
Query: 156 EDVTEYESTPEGRRITKLDQILLNGNNITML 186
EDVTE +S EG + +LLNG I M+
Sbjct: 64 EDVTETDS--EGNTDGPVKIMLLNGGQIAMI 92
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 13/67 (19%)
Query: 6 VATNPS-------------TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 52
VATNPS T+LPLE++DK IG + +++ DKE G L GFDDFVN++L
Sbjct: 4 VATNPSVDVTGKQEEVTISTVLPLEIIDKSIGKVVTVLLTTDKEFTGKLVGFDDFVNVVL 63
Query: 53 EDVTDCH 59
EDVT+
Sbjct: 64 EDVTETD 70
>gi|254564981|ref|XP_002489601.1| hypothetical protein [Komagataella pastoris GS115]
gi|238029397|emb|CAY67320.1| Hypothetical protein PAS_chr1-3_0256 [Komagataella pastoris GS115]
gi|328350024|emb|CCA36424.1| Probable U6 snRNA-associated Sm-like protein LSm5 [Komagataella
pastoris CBS 7435]
Length = 79
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLELVDK IGS++ I++ ND+E GTL GFD+FVN++L DVT E+ PEG
Sbjct: 8 SEILPLELVDKAIGSQVRILLINDREFEGTLVGFDEFVNVILSDVT--ETGPEGT--IHR 63
Query: 174 DQILLNGNNITML 186
D++LL G I M
Sbjct: 64 DEMLLTGTTIAMF 76
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 39/48 (81%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
S +LPLELVDK IGS++ I++ ND+E GTL GFD+FVN++L DVT+
Sbjct: 8 SEILPLELVDKAIGSQVRILLINDREFEGTLVGFDEFVNVILSDVTET 55
>gi|403333765|gb|EJY66003.1| U6 small nuclear ribonucleoprotein E, putative [Oxytricha
trifallax]
Length = 81
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 121 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR---ITKLDQIL 177
+VDKC G R+ IIM+NDKE GTL GFD + N++L+DV EY+ G + + +++ +L
Sbjct: 1 MVDKCQGQRVWIIMQNDKEFSGTLRGFDGYFNLILDDVKEYQDAGAGGKRLLVNQVESML 60
Query: 178 LNGNNITML 186
LNG++I M+
Sbjct: 61 LNGSHICMM 69
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 18 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
+VDKC G R+ IIM+NDKE GTL GFD + N++L+DV + D+
Sbjct: 1 MVDKCQGQRVWIIMQNDKEFSGTLRGFDGYFNLILDDVKEYQDA 44
>gi|405117379|gb|AFR92154.1| hypothetical protein CNAG_00016 [Cryptococcus neoformans var.
grubii H99]
Length = 49
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 41/47 (87%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
ST+LPLELVD+CIGS I ++MKN++E GTL GFDD+VNM+L+DV E
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKE 49
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 41/47 (87%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
ST+LPLELVD+CIGS I ++MKN++E GTL GFDD+VNM+L+DV +
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKE 49
>gi|195655179|gb|ACG47057.1| SAD1 [Zea mays]
Length = 58
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 39/45 (86%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LE
Sbjct: 5 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLE 49
Score = 71.6 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/45 (71%), Positives = 39/45 (86%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 156
NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LE
Sbjct: 5 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLE 49
>gi|344302358|gb|EGW32663.1| hypothetical protein SPAPADRAFT_61726 [Spathaspora passalidarum
NRRL Y-27907]
Length = 84
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPLE++DK +G+++ ++M +DKE G L GFDD+VNM+LEDV E ++ EG + + +
Sbjct: 10 ILPLEIIDKSVGNKVKVLMTSDKEFYGKLIGFDDYVNMVLEDVVEIDN--EGTKSDPVKK 67
Query: 176 ILLNGNNITML 186
+LLNG ++ M+
Sbjct: 68 MLLNGGHVAMI 78
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
+LPLE++DK +G+++ ++M +DKE G L GFDD+VNM+LEDV + +
Sbjct: 10 ILPLEIIDKSVGNKVKVLMTSDKEFYGKLIGFDDYVNMVLEDVVEIDNE 58
>gi|397573274|gb|EJK48624.1| hypothetical protein THAOC_32562 [Thalassiosira oceanica]
gi|397614325|gb|EJK62729.1| hypothetical protein THAOC_16646 [Thalassiosira oceanica]
Length = 95
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR--ITKL 173
+LPLEL+DK IGS I I+M+ E+ G L GFDD+VN++L+D EY P + +TK
Sbjct: 5 ILPLELIDKAIGSPIWILMRGQTELTGILRGFDDYVNLVLDDAVEYSPDPRNKSEIVTKR 64
Query: 174 --DQILLNGNNITML 186
+ILLNGN++ ++
Sbjct: 65 LETEILLNGNHVAVM 79
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 34/45 (75%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLEL+DK IGS I I+M+ E+ G L GFDD+VN++L+D +
Sbjct: 5 ILPLELIDKAIGSPIWILMRGQTELTGILRGFDDYVNLVLDDAVE 49
>gi|448080005|ref|XP_004194518.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359375940|emb|CCE86522.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPLE++DK IG +I +++ N KE GTL GFDD+VN++LE+V E++ +I K +
Sbjct: 18 ILPLEVIDKSIGHKIRVLLTNTKEFHGTLVGFDDYVNVVLENVEEFDGDASSGKIVK--K 75
Query: 176 ILLNGNNITML 186
+LLNG I ML
Sbjct: 76 MLLNGGQIAML 86
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLE++DK IG +I +++ N KE GTL GFDD+VN++LE+V +
Sbjct: 18 ILPLEVIDKSIGHKIRVLLTNTKEFHGTLVGFDDYVNVVLENVEE 62
>gi|448084481|ref|XP_004195616.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359377038|emb|CCE85421.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPLE++DK IG +I +++ N KE GTL GFDD+VN++LE+V E++ +I K +
Sbjct: 18 ILPLEVIDKSIGHKIRVLLTNTKEFHGTLVGFDDYVNVVLENVEEFDGDAASGKIVK--K 75
Query: 176 ILLNGNNITML 186
+LLNG I ML
Sbjct: 76 MLLNGGQIAML 86
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 36/45 (80%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLE++DK IG +I +++ N KE GTL GFDD+VN++LE+V +
Sbjct: 18 ILPLEVIDKSIGHKIRVLLTNTKEFHGTLVGFDDYVNVVLENVEE 62
>gi|255719860|ref|XP_002556210.1| KLTH0H07612p [Lachancea thermotolerans]
gi|238942176|emb|CAR30348.1| KLTH0H07612p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ +LPLE++DK +G + +++ + +E GTL G+DDFVN++LEDV EY+ E +R
Sbjct: 4 AEVLPLEIIDKTVGQPVWVMLTSHREFAGTLVGYDDFVNVVLEDVIEYDHDQEIKR--HA 61
Query: 174 DQILLNGNNITML 186
++LL+GNNI+ML
Sbjct: 62 GKMLLSGNNISML 74
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC-HDSHLLSYFAS 69
+ +LPLE++DK +G + +++ + +E GTL G+DDFVN++LEDV + HD + +
Sbjct: 4 AEVLPLEIIDKTVGQPVWVMLTSHREFAGTLVGYDDFVNVVLEDVIEYDHDQEIKRHAGK 63
Query: 70 DLIN 73
L++
Sbjct: 64 MLLS 67
>gi|448534872|ref|XP_003870851.1| hypothetical protein CORT_0G00330 [Candida orthopsilosis Co 90-125]
gi|380355207|emb|CCG24723.1| hypothetical protein CORT_0G00330 [Candida orthopsilosis]
Length = 96
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY-ESTPEGR 168
T P +LPLE++D+ IG ++ I+M +DKE GTL GFDD+VNM+LEDVT ++ +
Sbjct: 12 GTIPQQVLPLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDYVNMVLEDVTVVTDNNDKDE 71
Query: 169 RITKLDQILLNGNNITML 186
+ + ++LLNG + M+
Sbjct: 72 QDVIVKKMLLNGGQVAMI 89
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
T P +LPLE++D+ IG ++ I+M +DKE GTL GFDD+VNM+LEDVT D++
Sbjct: 12 GTIPQQVLPLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDYVNMVLEDVTVVTDNN 67
>gi|363753790|ref|XP_003647111.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890747|gb|AET40294.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
Length = 82
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 3/74 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST-PEGRRITK 172
S +LPLE++DK I I I++ +++E GTL GFDDFVN+++EDV EYE E +R
Sbjct: 4 SEILPLEIIDKTINQPIWILLTSNREFTGTLVGFDDFVNVVIEDVIEYEGVDKEVKR--H 61
Query: 173 LDQILLNGNNITML 186
++LL+GNNITML
Sbjct: 62 HGKMLLSGNNITML 75
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S +LPLE++DK I I I++ +++E GTL GFDDFVN+++EDV +
Sbjct: 4 SEILPLEIIDKTINQPIWILLTSNREFTGTLVGFDDFVNVVIEDVIE 50
>gi|50308811|ref|XP_454410.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643545|emb|CAG99497.1| KLLA0E10209p [Kluyveromyces lactis]
Length = 84
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S +LPLE++DK IG + I++K+ +E GTL GFDD+VN+++E+ EY E +R
Sbjct: 5 SEILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQEIKRFQ-- 62
Query: 174 DQILLNGNNITML 186
++LL GNNI ML
Sbjct: 63 GKMLLTGNNIAML 75
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASD 70
S +LPLE++DK IG + I++K+ +E GTL GFDD+VN+++E+ + + + F
Sbjct: 5 SEILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQEIKRFQGK 64
Query: 71 LI 72
++
Sbjct: 65 ML 66
>gi|223993353|ref|XP_002286360.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977675|gb|EED96001.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 94
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+ +LPLEL+DK IGS I I+M+ E+ G L GFDD+VN++L+D EY P + +
Sbjct: 3 TRILPLELIDKAIGSPIWILMRGQTELTGILRGFDDYVNLVLDDAVEYSPDPRDKSVVVK 62
Query: 174 D----QILLNGNNITML 186
+ILLNGN++ +L
Sbjct: 63 KVLKAEILLNGNHVAVL 79
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+ +LPLEL+DK IGS I I+M+ E+ G L GFDD+VN++L+D +
Sbjct: 3 TRILPLELIDKAIGSPIWILMRGQTELTGILRGFDDYVNLVLDDAVE 49
>gi|443921905|gb|ELU41433.1| importin alpha subunit [Rhizoctonia solani AG-1 IA]
Length = 1187
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 44/73 (60%), Gaps = 16/73 (21%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
P ELVD+CIG+RI +IMKN M+L+DVTEYE TP+G + TK
Sbjct: 1096 PQGGFNFELVDRCIGTRIWVIMKN----------------MVLDDVTEYEITPQGIKKTK 1139
Query: 173 LDQILLNGNNITM 185
L Q LLNGNNI M
Sbjct: 1140 LAQTLLNGNNICM 1152
>gi|395857071|ref|XP_003800936.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Otolemur
garnettii]
Length = 59
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 45/53 (84%), Gaps = 2/53 (3%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
MK++KEI G L GFDDFV+M+LEDVTE + TPEG RITKLD I LNGN+ITML
Sbjct: 1 MKSNKEIAGPLLGFDDFVSMVLEDVTE-KMTPEG-RITKLDLIPLNGNDITML 51
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 31 MKNDKEIVGTLNGFDDFVNMLLEDVTD 57
MK++KEI G L GFDDFV+M+LEDVT+
Sbjct: 1 MKSNKEIAGPLLGFDDFVSMVLEDVTE 27
>gi|444315021|ref|XP_004178168.1| hypothetical protein TBLA_0A08590 [Tetrapisispora blattae CBS 6284]
gi|387511207|emb|CCH58649.1| hypothetical protein TBLA_0A08590 [Tetrapisispora blattae CBS 6284]
Length = 97
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 108 SVATNPST----LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
SV++N + +LPLE++DK I ++ I++++ +E +G L G DDFVN+++EDVTEY
Sbjct: 9 SVSSNTTASLPDILPLEIIDKAINQQVWILLQSQREFIGKLIGVDDFVNVIIEDVTEYIE 68
Query: 164 TPEGRRITKLDQILLNGNNITML 186
E R + ++LL+GN+I ++
Sbjct: 69 DGESRVMEHHGRMLLSGNSIAII 91
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
Query: 5 SVATNPST----LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
SV++N + +LPLE++DK I ++ I++++ +E +G L G DDFVN+++EDVT+
Sbjct: 9 SVSSNTTASLPDILPLEIIDKAINQQVWILLQSQREFIGKLIGVDDFVNVIIEDVTE 65
>gi|354548281|emb|CCE45017.1| hypothetical protein CPAR2_700210 [Candida parapsilosis]
Length = 97
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 8/76 (10%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT-----EYESTPEGRRI 170
+LPLE++D+ IG ++ I+M +DKE GTL GFDDFVNM+LEDVT + ++ + +
Sbjct: 18 VLPLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDFVNMVLEDVTVVTDSDNDADTKDEVV 77
Query: 171 TKLDQILLNGNNITML 186
K+ LLNG + M+
Sbjct: 78 KKM---LLNGGQVAMI 90
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
+LPLE++D+ IG ++ I+M +DKE GTL GFDDFVNM+LEDVT DS
Sbjct: 18 VLPLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDFVNMVLEDVTVVTDSD 67
>gi|401625995|gb|EJS43964.1| lsm5p [Saccharomyces arboricola H-6]
Length = 93
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR-RITKLD 174
+LPLE++DK I R+ I++++++E GTL GFDDFVN++LED E+ PE R K+
Sbjct: 6 ILPLEVIDKTINQRVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDETRNEKVM 65
Query: 175 Q----ILLNGNNITML 186
Q +LL+GNNI +L
Sbjct: 66 QHHGRMLLSGNNIAIL 81
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+LPLE++DK I R+ I++++++E GTL GFDDFVN++LED +
Sbjct: 6 ILPLEVIDKTINQRVLIVLQSNREFEGTLVGFDDFVNVILEDAVEW 51
>gi|45201226|ref|NP_986796.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|44986080|gb|AAS54620.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|374110045|gb|AEY98950.1| FAGR130Wp [Ashbya gossypii FDAG1]
Length = 80
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPLE++D+ I I +++ +++E GTL GFDDFVN+++EDV EY++ P+ +
Sbjct: 3 VLPLEIIDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDA-PDRAVKRHPGR 61
Query: 176 ILLNGNNITML 186
+LL+GNNIT+L
Sbjct: 62 MLLSGNNITVL 72
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLE++D+ I I +++ +++E GTL GFDDFVN+++EDV +
Sbjct: 3 VLPLEIIDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVE 47
>gi|323305294|gb|EGA59041.1| Lsm5p [Saccharomyces cerevisiae FostersB]
Length = 116
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE-----GRRI 170
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED E+ PE G+ +
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNGKVM 65
Query: 171 TKLDQILLNGNNITML 186
++LL+GNNI +L
Sbjct: 66 QHHGRMLLSGNNIAIL 81
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 36/45 (80%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED +
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE 50
>gi|148672764|gb|EDL04711.1| mCG13108, isoform CRA_b [Mus musculus]
gi|149033253|gb|EDL88054.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
gi|431909053|gb|ELK12644.1| U6 snRNA-associated Sm-like protein LSm5 [Pteropus alecto]
Length = 59
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/36 (86%), Positives = 35/36 (97%)
Query: 151 VNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
++M+LEDVTE+E TPEGRRITKLDQILLNGNNITML
Sbjct: 15 LDMVLEDVTEFEITPEGRRITKLDQILLNGNNITML 50
>gi|385305618|gb|EIF49579.1| small nuclear ribonucleoprotein [Dekkera bruxellensis AWRI1499]
Length = 93
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
T +LPLEL+DK IG++I IM + E VGTL GFDDFVN++L DVTEY+ + + +
Sbjct: 11 TEVPQILPLELIDKSIGTKIWAIMSDFHEFVGTLEGFDDFVNIVLSDVTEYDVS--KKVV 68
Query: 171 TKLDQILLNGNNITML 186
+K ++LL+ N+ ML
Sbjct: 69 SKKSKMLLSSRNLAML 84
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T +LPLEL+DK IG++I IM + E VGTL GFDDFVN++L DVT+
Sbjct: 11 TEVPQILPLELIDKSIGTKIWAIMSDFHEFVGTLEGFDDFVNIVLSDVTE 60
>gi|367010514|ref|XP_003679758.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
gi|359747416|emb|CCE90547.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
Length = 85
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE--YESTPEGRRITK- 172
+LPLE++DK I + I++++++E GTL GFDDFVN+++ED E Y S E +I +
Sbjct: 6 ILPLEIIDKTISQPVWIVLQSNREFTGTLVGFDDFVNVIIEDAVEWVYNSKFEDEKILEH 65
Query: 173 LDQILLNGNNITML 186
++LL+GNNI ML
Sbjct: 66 HGRMLLSGNNIAML 79
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+LPLE++DK I + I++++++E GTL GFDDFVN+++ED +
Sbjct: 6 ILPLEIIDKTISQPVWIVLQSNREFTGTLVGFDDFVNVIIEDAVEW 51
>gi|6320994|ref|NP_011073.1| Lsm5p [Saccharomyces cerevisiae S288c]
gi|731523|sp|P40089.1|LSM5_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|603386|gb|AAB64673.1| Yer146wp [Saccharomyces cerevisiae]
gi|45269457|gb|AAS56109.1| YER146W [Saccharomyces cerevisiae]
gi|151944864|gb|EDN63123.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405705|gb|EDV08972.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256272052|gb|EEU07064.1| Lsm5p [Saccharomyces cerevisiae JAY291]
gi|259146073|emb|CAY79333.1| Lsm5p [Saccharomyces cerevisiae EC1118]
gi|285811779|tpg|DAA07807.1| TPA: Lsm5p [Saccharomyces cerevisiae S288c]
gi|349577808|dbj|GAA22976.1| K7_Lsm5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299849|gb|EIW10941.1| Lsm5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR-RITKLD 174
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED E+ PE R K+
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVM 65
Query: 175 Q----ILLNGNNITML 186
Q +LL+GNNI +L
Sbjct: 66 QHHGRMLLSGNNIAIL 81
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED +
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEW 51
>gi|403216723|emb|CCK71219.1| hypothetical protein KNAG_0G01610 [Kazachstania naganishii CBS
8797]
Length = 86
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 53/74 (71%), Gaps = 4/74 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD- 174
+LPLE++DK I + II+++++E GTL GFDDFVN+++ED E+ T +G+ ++
Sbjct: 6 ILPLEVIDKTISQPVWIILQSNREFTGTLVGFDDFVNVIIEDAVEWTVT-DGKSEKIMEH 64
Query: 175 --QILLNGNNITML 186
++LL+GNNI ML
Sbjct: 65 HGRMLLSGNNIVML 78
Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED-----VTDCHDSHLLSYF 67
+LPLE++DK I + II+++++E GTL GFDDFVN+++ED VTD ++ +
Sbjct: 6 ILPLEVIDKTISQPVWIILQSNREFTGTLVGFDDFVNVIIEDAVEWTVTDGKSEKIMEHH 65
Query: 68 ASDLIN 73
L++
Sbjct: 66 GRMLLS 71
>gi|323309313|gb|EGA62531.1| Lsm5p [Saccharomyces cerevisiae FostersO]
Length = 116
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR-RITKLD 174
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED E+ PE R K+
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEXESRNEKVM 65
Query: 175 Q----ILLNGNNITML 186
Q +LL+GNNI +L
Sbjct: 66 QHHGRMLLSGNNIAIL 81
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 36/45 (80%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED +
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE 50
>gi|320163656|gb|EFW40555.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 139
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 36/41 (87%)
Query: 10 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNM 50
P+ L EL+DKCIGSRIHI+MK++KE+VGTL GFDDFV++
Sbjct: 86 PTRLTQTELIDKCIGSRIHIVMKSEKELVGTLLGFDDFVSI 126
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 36/41 (87%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNM 153
P+ L EL+DKCIGSRIHI+MK++KE+VGTL GFDDFV++
Sbjct: 86 PTRLTQTELIDKCIGSRIHIVMKSEKELVGTLLGFDDFVSI 126
>gi|50290221|ref|XP_447542.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526852|emb|CAG60479.1| unnamed protein product [Candida glabrata]
Length = 90
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 7/78 (8%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD- 174
+LPLE++DK I ++HII+++++E G L GFD+FVN++LED EY + K +
Sbjct: 6 VLPLEVIDKTIDQQVHIILQSNREFSGKLVGFDEFVNVILEDPIEYTTEITANDGLKSEV 65
Query: 175 ------QILLNGNNITML 186
++LL+GNNITML
Sbjct: 66 VMEHHGRMLLSGNNITML 83
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 35/42 (83%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 54
+LPLE++DK I ++HII+++++E G L GFD+FVN++LED
Sbjct: 6 VLPLEVIDKTIDQQVHIILQSNREFSGKLVGFDEFVNVILED 47
>gi|365987129|ref|XP_003670396.1| hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS 421]
gi|343769166|emb|CCD25153.1| hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS 421]
Length = 88
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR---ITK 172
+LPLE++DK I + II+++ +E GTL GFDDFVN+++ED E+ EG +T
Sbjct: 7 VLPLEVIDKTINQPVWIILQSQREFTGTLIGFDDFVNVIIEDAVEWVLNEEGEDEMIMTH 66
Query: 173 LDQILLNGNNITML 186
++LL+GN I ML
Sbjct: 67 HGRMLLSGNTIAML 80
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+LPLE++DK I + II+++ +E GTL GFDDFVN+++ED +
Sbjct: 7 VLPLEVIDKTINQPVWIILQSQREFTGTLIGFDDFVNVIIEDAVEW 52
>gi|119482644|ref|XP_001261350.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
gi|119409505|gb|EAW19453.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
Length = 61
Score = 64.3 bits (155), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/53 (64%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
MK DKE GTL GFDD+VNM+LEDVTE++ + G ++ KL +ILLNGNNI ML
Sbjct: 1 MKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS--GAQV-KLPKILLNGNNICML 50
Score = 45.4 bits (106), Expect = 0.015, Method: Composition-based stats.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 31 MKNDKEIVGTLNGFDDFVNMLLEDVTD 57
MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 1 MKGDKEFSGTLLGFDDYVNMVLEDVTE 27
>gi|156843124|ref|XP_001644631.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
gi|156115278|gb|EDO16773.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
Length = 86
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+LPLE++DK I + II+++++E G L GFDDFVN+++ED EY + + T+L
Sbjct: 5 EVILPLEIIDKTINQPVWIILQSNREFTGKLVGFDDFVNVIIEDAVEYITDNHNQCDTEL 64
Query: 174 ---DQILLNGNNITML 186
++LL+GNNI ML
Sbjct: 65 RHHGRMLLSGNNIAML 80
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 4/55 (7%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED----VTDCHDS 61
+LPLE++DK I + II+++++E G L GFDDFVN+++ED +TD H+
Sbjct: 5 EVILPLEIIDKTINQPVWIILQSNREFTGKLVGFDDFVNVIIEDAVEYITDNHNQ 59
>gi|367001532|ref|XP_003685501.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS 4417]
gi|357523799|emb|CCE63067.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS 4417]
Length = 86
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY---ESTPEGRRI 170
LLPLE++DK I + II+++++E GTL GFDDFVN+++ED EY + + +
Sbjct: 5 EVLLPLEIIDKTINQNVWIILQSNREFTGTLIGFDDFVNVIIEDAVEYITRNNDDDDIVM 64
Query: 171 TKLDQILLNGNNITML 186
++LL+GNNI ML
Sbjct: 65 KHHGRMLLSGNNIAML 80
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
LLPLE++DK I + II+++++E GTL GFDDFVN+++ED +
Sbjct: 5 EVLLPLEIIDKTINQNVWIILQSNREFTGTLIGFDDFVNVIIEDAVE 51
>gi|406861058|gb|EKD14114.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 59
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 44/64 (68%), Gaps = 7/64 (10%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHTHCG 193
MK DKE GTL GFDD+VNM+LEDVTE++ + TKL +ILLNGNNI M L T
Sbjct: 1 MKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNH---TKLSKILLNGNNICMARLLT--- 54
Query: 194 MRPY 197
RP+
Sbjct: 55 -RPF 57
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 23/27 (85%)
Query: 31 MKNDKEIVGTLNGFDDFVNMLLEDVTD 57
MK DKE GTL GFDD+VNM+LEDVT+
Sbjct: 1 MKGDKEFSGTLLGFDDYVNMVLEDVTE 27
>gi|254586103|ref|XP_002498619.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
gi|238941513|emb|CAR29686.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
Length = 86
Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 51/74 (68%), Gaps = 3/74 (4%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD- 174
+LPLE++DK +G + I++++++E GTL GFDDFVN+++ED E + + I +
Sbjct: 6 ILPLEIIDKTVGQPVWIVLQSNREFTGTLIGFDDFVNVIVEDAKEVTVGADLQDIPVMQH 65
Query: 175 --QILLNGNNITML 186
++LL+GN+I ML
Sbjct: 66 KGRMLLSGNSIAML 79
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 36/46 (78%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+LPLE++DK +G + I++++++E GTL GFDDFVN+++ED +
Sbjct: 6 ILPLEIIDKTVGQPVWIVLQSNREFTGTLIGFDDFVNVIVEDAKEV 51
>gi|366987137|ref|XP_003673335.1| hypothetical protein NCAS_0A03890 [Naumovozyma castellii CBS 4309]
gi|342299198|emb|CCC66947.1| hypothetical protein NCAS_0A03890 [Naumovozyma castellii CBS 4309]
Length = 90
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 7/78 (8%)
Query: 116 LLPLELVDKCIGSRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTP--EGRRIT 171
+LPLE++DK IG + II+++ ++E GTL GFDDFVN+++ED E+ P + + I
Sbjct: 7 VLPLEVIDKTIGQAVWIILQSQPNREFTGTLIGFDDFVNVIIEDAVEWGIDPNDDFKEII 66
Query: 172 KLD---QILLNGNNITML 186
++ ++LL+GNNI ML
Sbjct: 67 IMEHHGRMLLSGNNIAML 84
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Query: 13 LLPLELVDKCIGSRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTDC 58
+LPLE++DK IG + II+++ ++E GTL GFDDFVN+++ED +
Sbjct: 7 VLPLEVIDKTIGQAVWIILQSQPNREFTGTLIGFDDFVNVIIEDAVEW 54
>gi|115620561|ref|XP_797604.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Strongylocentrotus purpuratus]
Length = 43
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 32/34 (94%)
Query: 153 MLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
M+LEDV E+E+T EGRR+TKLDQILLNGNNITML
Sbjct: 1 MVLEDVVEFETTAEGRRVTKLDQILLNGNNITML 34
>gi|410076164|ref|XP_003955664.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS 2517]
gi|372462247|emb|CCF56529.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS 2517]
Length = 87
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD- 174
+LPLE++DK I + II+++++E GTL GFDDFVN++++D EY G ++
Sbjct: 6 VLPLEVIDKTINQPVWIILQSNREFTGTLVGFDDFVNVIIDDAKEYIVNDNGENELVMEH 65
Query: 175 --QILLNGNNITML 186
++LL+G NI ML
Sbjct: 66 HGRLLLSGGNINML 79
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLE++DK I + II+++++E GTL GFDDFVN++++D +
Sbjct: 6 VLPLEVIDKTINQPVWIILQSNREFTGTLVGFDDFVNVIIDDAKE 50
>gi|226290811|gb|EEH46274.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 97
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 16/73 (21%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
+T + LEL+DKC+GS+I ++MK DK+ M+LEDVTE++ T G + TKL
Sbjct: 29 NTYMFLELIDKCVGSKIWVVMKGDKD-------------MVLEDVTEFDYT--GAQ-TKL 72
Query: 174 DQILLNGNNITML 186
+ILLNGNN+ ML
Sbjct: 73 PKILLNGNNVCML 85
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 13/47 (27%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+T + LEL+DKC+GS+I ++MK DK+ M+LEDVT+
Sbjct: 29 NTYMFLELIDKCVGSKIWVVMKGDKD-------------MVLEDVTE 62
>gi|67539018|ref|XP_663283.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
gi|40743582|gb|EAA62772.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
Length = 110
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 38/48 (79%), Gaps = 3/48 (6%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
E GTL GFDD+VNM+LEDVTE++ T G ++ KL +ILLNGNNI ML
Sbjct: 55 EFSGTLLGFDDYVNMVLEDVTEFDYT--GAQV-KLPKILLNGNNICML 99
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 36 EIVGTLNGFDDFVNMLLEDVTD 57
E GTL GFDD+VNM+LEDVT+
Sbjct: 55 EFSGTLLGFDDYVNMVLEDVTE 76
>gi|322696272|gb|EFY88067.1| putative U6 snRNA-associated protein [Metarhizium acridum CQMa 102]
Length = 81
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 114 STLLPL-ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
S LLPL E +C ++ E GTL GFDD+VNM+LEDVTE++ + TK
Sbjct: 3 SQLLPLGEACLECAKFDTGEEANSELEFSGTLVGFDDYVNMVLEDVTEFDYS---GTHTK 59
Query: 173 LDQILLNGNNITML 186
L +ILLNGNNI ML
Sbjct: 60 LPKILLNGNNICML 73
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 11 STLLPL-ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPL E +C ++ E GTL GFDD+VNM+LEDVT+
Sbjct: 3 SQLLPLGEACLECAKFDTGEEANSELEFSGTLVGFDDYVNMVLEDVTE 50
>gi|164426888|ref|XP_001728350.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
gi|157071516|gb|EDO65259.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
Length = 65
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
E GTL GFDD+VNM+LEDVTE++ + TKL +ILLNGNNI ML
Sbjct: 9 EFAGTLVGFDDYVNMVLEDVTEFDYS---GNHTKLKKILLNGNNICML 53
Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 36 EIVGTLNGFDDFVNMLLEDVTD 57
E GTL GFDD+VNM+LEDVT+
Sbjct: 9 EFAGTLVGFDDYVNMVLEDVTE 30
>gi|134080970|emb|CAK41484.1| unnamed protein product [Aspergillus niger]
Length = 59
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%), Gaps = 3/49 (6%)
Query: 138 KEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
E GTL GFDD+VNM+LEDVTE++ + G ++ KL +ILLNGNN+ ML
Sbjct: 3 SEFAGTLLGFDDYVNMVLEDVTEFDYS--GSQV-KLPKILLNGNNVCML 48
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 35 KEIVGTLNGFDDFVNMLLEDVTD 57
E GTL GFDD+VNM+LEDVT+
Sbjct: 3 SEFAGTLLGFDDYVNMVLEDVTE 25
>gi|322704991|gb|EFY96580.1| small nuclear ribonucleoprotein (LSM5), putative [Metarhizium
anisopliae ARSEF 23]
Length = 100
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 119 LELVDKCIGSRIHIIMKNDKEI--VGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
+EL+D + + + + E+ GTL GFDD+VNM+LEDVTE++ + TKL +I
Sbjct: 26 VELIDNLKSANFNTGEEANSELEFSGTLIGFDDYVNMVLEDVTEFDYS---GTHTKLPKI 82
Query: 177 LLNGNNITML 186
LLNGNNI ML
Sbjct: 83 LLNGNNICML 92
Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 16 LELVDKCIGSRIHIIMKNDKEI--VGTLNGFDDFVNMLLEDVTD 57
+EL+D + + + + E+ GTL GFDD+VNM+LEDVT+
Sbjct: 26 VELIDNLKSANFNTGEEANSELEFSGTLIGFDDYVNMVLEDVTE 69
>gi|378754575|gb|EHY64606.1| hypothetical protein NERG_02416 [Nematocida sp. 1 ERTm2]
Length = 109
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
+V + T L E +DK I ++M++ K +VGTL +D + N+LLED TEY ++
Sbjct: 3 SAVTGSKGTRLMEEYLDKPI----FVVMRDGKYMVGTLRSYDQYYNILLEDSTEYTTSST 58
Query: 167 GRRITKLDQILLNGNNITMLGLHTHC 192
+ + +LL G NI +LG T
Sbjct: 59 EYSSIESESVLLRGENIILLGEGTFS 84
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 4 PSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+V + T L E +DK I ++M++ K +VGTL +D + N+LLED T+
Sbjct: 3 SAVTGSKGTRLMEEYLDKPI----FVVMRDGKYMVGTLRSYDQYYNILLEDSTE 52
>gi|320163655|gb|EFW40554.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 43
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 153 MLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
M+LEDVTE+E T +GR+ T LDQILLNGNNI +L
Sbjct: 1 MVLEDVTEFEITADGRKTTHLDQILLNGNNICLL 34
>gi|336476743|ref|YP_004615884.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM 4017]
gi|335930124|gb|AEH60665.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 102
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 105 TAPSVATNPS---TLLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTE 160
TA + N S TL P + V K IGS+I + MK D I+ G L DD++N+ L D E
Sbjct: 16 TATEMKNNLSEDTTLFPNKKVQKLIGSKIQVEMKGDLHILEGVLKSADDYLNLHLVDTVE 75
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
+G R+ L ++L GNNI ++
Sbjct: 76 I---SDGERLRSLGSVVLRGNNIILV 98
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 2 TAPSVATNPS---TLLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTD 57
TA + N S TL P + V K IGS+I + MK D I+ G L DD++N+ L D +
Sbjct: 16 TATEMKNNLSEDTTLFPNKKVQKLIGSKIQVEMKGDLHILEGVLKSADDYLNLHLVDTVE 75
Query: 58 CHDSHLLSYFAS 69
D L S
Sbjct: 76 ISDGERLRSLGS 87
>gi|13541906|ref|NP_111594.1| small nuclear ribonucleoprotein (snRNP)-like protein [Thermoplasma
volcanium GSS1]
gi|14325338|dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 71
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
++P++L+++ + R+ +++K+++ + GTL G+DD++NM+L+DV E KL
Sbjct: 2 IMPMKLLEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENVS----RKLGT 57
Query: 176 ILLNGNNIT 184
+++ G+N+
Sbjct: 58 VVIRGSNVV 66
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 39/49 (79%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
++P++L+++ + R+ +++K+++ + GTL G+DD++NM+L+DV + ++
Sbjct: 2 IMPMKLLEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSEN 50
>gi|294495451|ref|YP_003541944.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666450|gb|ADE36299.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 75
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V K +GSRI + MK D ++ G L DD++N+ LED E EG R L
Sbjct: 1 MFPNKKVQKLVGSRIQVEMKGDHSLLDGILKSADDYMNLHLEDTFE---MVEGERQRSLG 57
Query: 175 QILLNGNNITML 186
++L GNNI ++
Sbjct: 58 SVVLRGNNIILI 69
Score = 36.2 bits (82), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLED 54
+ P + V K +GSRI + MK D ++ G L DD++N+ LED
Sbjct: 1 MFPNKKVQKLVGSRIQVEMKGDHSLLDGILKSADDYMNLHLED 43
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 99 HLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
H + + SV N +T PL+++ + + S++ I +K +E G L FD +N++L D
Sbjct: 13 HGIGKVIIVSVQKNVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDA 72
Query: 159 TEYESTPEGRRITKLDQILLNGNNIT 184
E ES RR L +L+ G+NI
Sbjct: 73 EELESGESSRR---LGVVLIRGDNIV 95
>gi|67540086|ref|XP_663817.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
gi|40738809|gb|EAA57999.1| hypothetical protein AN6213.2 [Aspergillus nidulans FGSC A4]
Length = 775
Score = 48.1 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 109 VATNPST--LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
V TNP LPL L+ G + + +KN + + G L D+++N++L +V +++PE
Sbjct: 2 VNTNPKCQLCLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVV--QTSPE 59
Query: 167 GRRITKLDQILLNGNNITML 186
G R KL ++ + GNNI L
Sbjct: 60 GDRFFKLPEVYVRGNNIKYL 79
>gi|254166807|ref|ZP_04873661.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|254167437|ref|ZP_04874289.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|289596330|ref|YP_003483026.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623700|gb|EDY36263.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|197624417|gb|EDY36978.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|289534117|gb|ADD08464.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 72
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL++++ + RI +++K+++ + G L G+DD++NM+L D TE E T E R +L +
Sbjct: 3 LPLKMLENFLNKRISLLLKDNRVLEGKLVGYDDYMNMVLMD-TE-EKTEEMTR--RLGTV 58
Query: 177 LLNGNNITMLGL 188
+L GNN+ + L
Sbjct: 59 ILRGNNVVRMAL 70
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
LPL++++ + RI +++K+++ + G L G+DD++NM+L D +
Sbjct: 3 LPLKMLENFLNKRISLLLKDNRVLEGKLVGYDDYMNMVLMDTEE 46
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
SV N +T PL+++ + + S++ I +K +E G L FD +N++L D E ES
Sbjct: 2 SVQKNVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESS 61
Query: 168 RRITKLDQILLNGNNIT 184
RR L +L+ G+NI
Sbjct: 62 RR---LGVVLIRGDNIV 75
Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
SV N +T PL+++ + + S++ I +K +E G L FD +N++L D +
Sbjct: 2 SVQKNVNTSRPLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGE 59
>gi|432328294|ref|YP_007246438.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135003|gb|AGB04272.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 72
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
+PL++++ + RI +++K+++ + G L GFDD++NM+L D TE E T E R +L +
Sbjct: 3 MPLKMLENFMNKRISLLLKDNRVLEGKLVGFDDYMNMVLMD-TE-EKTEEMTR--RLGTV 58
Query: 177 LLNGNNITMLGL 188
+L GNN+ + L
Sbjct: 59 ILRGNNVVRMSL 70
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+PL++++ + RI +++K+++ + G L GFDD++NM+L D +
Sbjct: 3 MPLKMLENFMNKRISLLLKDNRVLEGKLVGFDDYMNMVLMDTEE 46
>gi|313227657|emb|CBY22804.1| unnamed protein product [Oikopleura dioica]
Length = 96
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 121 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNG 180
++D +G+++ I+ + + +VG L G D VN++L + E TPEG L L+ G
Sbjct: 4 MLDALVGNKVEIVTNDGRVVVGILKGLDQVVNVVLANTEERVFTPEGVDRQALGLYLIRG 63
Query: 181 NNITMLGL---HTHCGM 194
+N+ ++G +T GM
Sbjct: 64 DNVAVVGAVDENTELGM 80
>gi|402467336|gb|EJW02651.1| hypothetical protein EDEG_02948 [Edhazardia aedis USNM 41457]
Length = 78
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPLE++ I I +IM+ DK G L FD+ VN+ +E+V YE +G R+ +
Sbjct: 6 LPLEILKNNINKEIRLIMRKDKVFSGVLRTFDEHVNIFMENV--YEILDDGSRM-HIGST 62
Query: 177 LLNGNNITMLGL 188
++NG N+ M+ L
Sbjct: 63 IINGGNVAMIDL 74
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLIN 73
LPLE++ I I +IM+ DK G L FD+ VN+ +E+V + D + S +IN
Sbjct: 6 LPLEILKNNINKEIRLIMRKDKVFSGVLRTFDEHVNIFMENVYEILDDGSRMHIGSTIIN 65
>gi|183232658|ref|XP_001913749.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|169801936|gb|EDS89477.1| hypothetical protein EHI_076840 [Entamoeba histolytica HM-1:IMSS]
gi|407044320|gb|EKE42513.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449703260|gb|EMD43742.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 83
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI-TKLDQ 175
LP +++ + I +++ II+K+ +E VG + G D++ N++L+D EYE T+
Sbjct: 5 LPTQILLEWINTKVWIILKSQREFVGIMKGIDEYTNIILQDCIEYEIKDNKENYQTQHKL 64
Query: 176 ILLNGNNITML 186
IL++GN I M+
Sbjct: 65 ILVSGNGIDMI 75
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 30/41 (73%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 54
LP +++ + I +++ II+K+ +E VG + G D++ N++L+D
Sbjct: 5 LPTQILLEWINTKVWIILKSQREFVGIMKGIDEYTNIILQD 45
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
+ N +T PL+++ K + S++ I +K +E G LN FD +N++L D E ES
Sbjct: 2 NAQKNLNTSRPLDVLGKSLNSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEELESGESS 61
Query: 168 RRITKLDQILLNGNNIT 184
RR L +L+ G+NI
Sbjct: 62 RR---LGVVLIRGDNIV 75
Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
+ N +T PL+++ K + S++ I +K +E G LN FD +N++L D +
Sbjct: 2 NAQKNLNTSRPLDVLGKSLNSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEELESGE 59
>gi|91772246|ref|YP_564938.1| small ribonucleoprotein [Methanococcoides burtonii DSM 6242]
gi|91711261|gb|ABE51188.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 65
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 126 IGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNIT 184
IGS++ + MK D+ I+ GTL DD++N+ L D TE +G+R+ L ++L GNNI
Sbjct: 2 IGSKVQVEMKGDQHILEGTLQSADDYLNLHLVDTTEI---ADGQRLRSLGSVVLRGNNII 58
Query: 185 ML 186
++
Sbjct: 59 LI 60
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 23 IGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTDCHDSHLLSYFAS 69
IGS++ + MK D+ I+ GTL DD++N+ L D T+ D L S
Sbjct: 2 IGSKVQVEMKGDQHILEGTLQSADDYLNLHLVDTTEIADGQRLRSLGS 49
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
AP A + PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V E +T
Sbjct: 8 APVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV 67
Query: 166 E 166
E
Sbjct: 68 E 68
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
AP A + PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V +
Sbjct: 8 APVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEET 63
>gi|401626033|gb|EJS44001.1| lsm4p [Saccharomyces arboricola H-6]
Length = 179
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I GTL D+++N+ L +VTEY E+ E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSGESAINSENNAEN 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ KL++I + G I + L
Sbjct: 61 NKAVKLNEIYVRGTFIKFIKLQ 82
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPL L+ G ++ I +KN + I GTL D+++N+ L +VT+
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGTLTNVDNWMNLTLSNVTE 45
>gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
gi|48430441|gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
LLP++++++ + ++ +++K+++ + GTL G+D+++NM L+D E T KL
Sbjct: 2 ALLPMKMLEESLNKKVSLLLKDNRVLEGTLAGYDEYMNMTLDDAEESGETQR-----KLG 56
Query: 175 QILLNGNNI 183
+++ G+N+
Sbjct: 57 TVVIRGSNV 65
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 37/51 (72%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
LLP++++++ + ++ +++K+++ + GTL G+D+++NM L+D + ++
Sbjct: 2 ALLPMKMLEESLNKKVSLLLKDNRVLEGTLAGYDEYMNMTLDDAEESGETQ 52
>gi|324567919|gb|ADY49901.1| U6 snRNA-associated Sm-like protein LSm3, partial [Ascaris suum]
Length = 76
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
AP A + PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V E +T
Sbjct: 8 APVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTV 67
Query: 166 E 166
E
Sbjct: 68 E 68
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
AP A + PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V +
Sbjct: 8 APVPAITSNVEEPLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEET 63
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G LN +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTVE 65
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G LN +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEET 60
>gi|284161893|ref|YP_003400516.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284011890|gb|ADB57843.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 75
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+LP ++V +G I + MK ++ E+VG L G DD++N+ L + E ++ G +I L
Sbjct: 1 MLPNQMVRSLVGKMIRVEMKGEENELVGVLEGVDDYMNLCLTNAMECKN---GEKIRNLG 57
Query: 175 QILLNGNNITML 186
I+L GNNI ++
Sbjct: 58 TIVLRGNNIVII 69
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFAS 69
+LP ++V +G I + MK ++ E+VG L G DD++N+ L + +C + + +
Sbjct: 1 MLPNQMVRSLVGKMIRVEMKGEENELVGVLEGVDDYMNLCLTNAMECKNGEKIRNLGT 58
>gi|387592500|gb|EIJ87524.1| hypothetical protein NEQG_02405 [Nematocida parisii ERTm3]
gi|387596986|gb|EIJ94606.1| hypothetical protein NEPG_00128 [Nematocida parisii ERTm1]
Length = 105
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%)
Query: 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILL 178
+ L+++ + I ++++++ I G L +D + N+LLED+T+Y + +T+ + +LL
Sbjct: 11 IRLLEEYLDKDIFVVLRDNTYIKGILRSYDQYYNILLEDITQYVISNNEYLLTESESVLL 70
Query: 179 NGNNITMLGLHT 190
G NI +LG T
Sbjct: 71 RGENIILLGEGT 82
>gi|147919071|ref|YP_687199.1| small nuclear riboprotein-like protein [Methanocella arvoryzae
MRE50]
gi|110622595|emb|CAJ37873.1| small nuclear riboprotein-like protein [Methanocella arvoryzae
MRE50]
Length = 74
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V IG ++ + MK +K I+ GTL DD++N+ L D TE + G+++ L
Sbjct: 1 MFPNKKVQALIGQKVQVEMKGEKNILEGTLVSADDYLNLHLVDTTEVAA---GQKLRTLG 57
Query: 175 QILLNGNNITML 186
++L GNNI +L
Sbjct: 58 SVVLRGNNIILL 69
>gi|402224412|gb|EJU04475.1| LSM-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 93
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 118 PLELVDKCIGSRI--HIIMKNDKE--IVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ ++ K + R+ I + ++ E I G + GFD+F+N++L+D +E + E + L
Sbjct: 12 PINVIFKNLQQRVPVQIWLYDNVEMRIEGRIIGFDEFMNVVLDDASEVFVSEESKSPRSL 71
Query: 174 DQILLNGNNITMLGLHTHCGM 194
+ILL G+NIT++ +H M
Sbjct: 72 GRILLKGDNITLIQPSSHSSM 92
>gi|82617313|emb|CAI64218.1| small nuclear riboprotein-like protein [uncultured archaeon]
Length = 73
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V IGSR+ + MK D I+ G L DD++N+ + D E +G R+ L
Sbjct: 1 MFPTKKVQSMIGSRVQVEMKGDAHILEGELESVDDYLNLHMLDTVE---IADGERLRSLG 57
Query: 175 QILLNGNNITML 186
++L GNNI ++
Sbjct: 58 SVVLRGNNIILI 69
Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTDCHDSHLLSYFAS 69
+ P + V IGSR+ + MK D I+ G L DD++N+ + D + D L S
Sbjct: 1 MFPTKKVQSMIGSRVQVEMKGDAHILEGELESVDDYLNLHMLDTVEIADGERLRSLGS 58
>gi|126647281|ref|XP_001388059.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|126117147|gb|EAZ51247.1| small nuclear ribonucleoprotein, putative [Cryptosporidium parvum
Iowa II]
Length = 92
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 128 SRIHIIMKNDKEIV--GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
R+ I + + K +V G + GFD+++N++L+ +E + E RR T + Q+LL G NI++
Sbjct: 28 QRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKKEVRRETSVGQLLLRGENISL 87
Query: 186 L 186
+
Sbjct: 88 I 88
>gi|288930748|ref|YP_003434808.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288892996|gb|ADC64533.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 74
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKE-IVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+LP ++V IG + + MK ++ +VG L DD++N+ L + EY+ +G +I L
Sbjct: 1 MLPNQMVKSLIGKEVRVEMKGEESSLVGRLESVDDYMNLHLSNAYEYK---DGEKIRVLG 57
Query: 175 QILLNGNNITML 186
I+L GNNI ++
Sbjct: 58 DIVLRGNNIVLI 69
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G LN +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIE 65
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G LN +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEET 60
>gi|448348652|ref|ZP_21537500.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|448369167|ref|ZP_21555934.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
gi|445642313|gb|ELY95381.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|445651710|gb|ELZ04618.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
Length = 78
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
PL++++ +G R+ + +K+ E VG L G+D +N++LED T+ DS
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADS 51
Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK---LD 174
PL++++ +G R+ + +K+ E VG L G+D +N++LED T + E T D
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETEPATAESVED 64
Query: 175 QILLNGNNI 183
++ G+N+
Sbjct: 65 TTIIRGDNV 73
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+LV + R+++ M+ND+E+ G L+GFD +NM++ +V E +T E
Sbjct: 17 PLDLVRLSLDERLYVKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLE 65
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+LV + R+++ M+ND+E+ G L+GFD +NM++ +V +
Sbjct: 17 PLDLVRLSLDERLYVKMRNDRELTGRLHGFDQHLNMIMSEVEET 60
>gi|73671030|ref|YP_307045.1| small nuclear riboprotein-like protein [Methanosarcina barkeri str.
Fusaro]
gi|72398192|gb|AAZ72465.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina barkeri
str. Fusaro]
Length = 74
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V K +GSRI + MK D ++ GTL DD++N+ L D E +G ++ L
Sbjct: 1 MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTME---IVKGEKVRSLG 57
Query: 175 QILLNGNNITML 186
++L GNNI ++
Sbjct: 58 SVVLRGNNIILI 69
>gi|260947628|ref|XP_002618111.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847983|gb|EEQ37447.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 88
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 108 SVATNPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
SV + S L P+ L+ K + + I + + I G + GFD+F+N+++++ E S
Sbjct: 3 SVKSKKSMLPPINLIFKYLQQQSVVTIWLYEQTQSRIQGKVRGFDEFMNIVIDEAEEI-S 61
Query: 164 TPEGRRITKLDQILLNGNNITML 186
T +G R T L +ILL G+NIT++
Sbjct: 62 TKDGSRET-LGRILLKGDNITLI 83
>gi|21228485|ref|NP_634407.1| small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
gi|20906968|gb|AAM32079.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
Length = 74
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V K +GSRI + MK D ++ GTL DD++N+ L D E +G ++ L
Sbjct: 1 MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTME---IVKGEKVRSLG 57
Query: 175 QILLNGNNITML 186
++L GNNI ++
Sbjct: 58 SVVLRGNNIILI 69
>gi|448361838|ref|ZP_21550451.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
gi|445649518|gb|ELZ02455.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
Length = 78
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
PL++++ +G R+ + +K+ E VG L G+D +N++LED T+ DS
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADS 51
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK---LD 174
PL++++ +G R+ + +K+ E VG L G+D +N++LED T + E T D
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETDTATAESVED 64
Query: 175 QILLNGNNI 183
++ G+N+
Sbjct: 65 TTIIRGDNV 73
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
APS N + PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E
Sbjct: 7 APSQPAN-TVEEPLDLIRLSLDERIYVKMRNDRELKGRLHAYDQHLNMILGDVEE 60
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
APS N + PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 7 APSQPAN-TVEEPLDLIRLSLDERIYVKMRNDRELKGRLHAYDQHLNMILGDVEET 61
>gi|282164085|ref|YP_003356470.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282156399|dbj|BAI61487.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 74
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V +G +I + MK +K I+ GTL DD++N+ + D TE + G+++ L
Sbjct: 1 MFPNKKVQALVGQKIQVEMKGEKNILEGTLVSADDYLNLHMVDTTEIQG---GQKLRTLG 57
Query: 175 QILLNGNNITML 186
++L GNNI +L
Sbjct: 58 SVVLRGNNIILL 69
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 46/67 (68%), Gaps = 5/67 (7%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LP++++++ + ++ +++K+++ +VGTL G+D+++NM L+D E G K+ ++
Sbjct: 4 LPMKMLEENLNKKVTLLLKDNRSLVGTLVGYDEYMNMTLDDAEE-----NGEVQRKIGKV 58
Query: 177 LLNGNNI 183
++ G+N+
Sbjct: 59 IIRGSNV 65
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 35/44 (79%)
Query: 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
LP++++++ + ++ +++K+++ +VGTL G+D+++NM L+D +
Sbjct: 4 LPMKMLEENLNKKVTLLLKDNRSLVGTLVGYDEYMNMTLDDAEE 47
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V E +T E
Sbjct: 18 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVE 66
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V +
Sbjct: 18 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEET 61
>gi|344241612|gb|EGV97715.1| U6 snRNA-associated Sm-like protein LSm3 [Cricetulus griseus]
Length = 103
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 59
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 54
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member [Tribolium
castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+LV + RI++ M+ND+EI G L+ +D +NM+L D E +T E T +
Sbjct: 16 PLDLVRLSLDERIYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVEIDEETYEEVYR 75
Query: 178 LNGNNITML 186
NI ML
Sbjct: 76 TTKRNIPML 84
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+LV + RI++ M+ND+EI G L+ +D +NM+L D +
Sbjct: 16 PLDLVRLSLDERIYVKMRNDREIRGRLHAYDQHMNMILSDAEET 59
>gi|383320207|ref|YP_005381048.1| Small nuclear ribonucleoprotein, LSM family [Methanocella conradii
HZ254]
gi|379321577|gb|AFD00530.1| Small nuclear ribonucleoprotein, LSM family [Methanocella conradii
HZ254]
Length = 74
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V IG +I + MK +K I+ GTL DD++N+ L D E + G+++ L
Sbjct: 1 MFPNKKVQSLIGQKIQVEMKGEKNILEGTLVSADDYLNLHLVDTAEIQG---GQKLRTLG 57
Query: 175 QILLNGNNITML 186
++L GNNI +L
Sbjct: 58 SVVLRGNNIILL 69
>gi|20090273|ref|NP_616348.1| Sm protein [Methanosarcina acetivorans C2A]
gi|19915270|gb|AAM04828.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 74
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V K +GSRI + MK D ++ GTL DD++N+ L D E G ++ L
Sbjct: 1 MFPNKKVQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTME---IVRGEKVRSLG 57
Query: 175 QILLNGNNITML 186
++L GNNI ++
Sbjct: 58 SVVLRGNNIILI 69
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ M+N++E+ G LN +D ++NM+L +V E
Sbjct: 19 PLDLIRLSLDERIYVKMRNERELKGRLNAYDQYLNMILGEVEE 61
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G LN +D ++NM+L +V +
Sbjct: 19 PLDLIRLSLDERIYVKMRNERELKGRLNAYDQYLNMILGEVEET 62
>gi|254581938|ref|XP_002496954.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
gi|238939846|emb|CAR28021.1| ZYRO0D11968p [Zygosaccharomyces rouxii]
Length = 93
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 36/112 (32%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
+I PI C + Q +T L+ +G+RI
Sbjct: 8 VIPPINCIFGFLQQQTVVTFWLFEQ---------------------LGTRIR-------- 38
Query: 140 IVGTLNGFDDFVNMLLEDVTEYESTPE-GR----RITKLDQILLNGNNITML 186
G ++GFD+F+N+++ED TE P+ G+ R KL +ILL G+NIT++
Sbjct: 39 --GKISGFDEFMNVVIEDATEIPVDPQTGKEHLDRGKKLGKILLKGDNITLI 88
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Takifugu
rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 106 APSVATNPST---LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
A V P+T PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E
Sbjct: 2 ADEVEQQPATNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETV 61
Query: 163 STPE 166
+T E
Sbjct: 62 TTVE 65
Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 3 APSVATNPST---LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
A V P+T PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 2 ADEVEQQPATNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|189193623|ref|XP_001933150.1| hypothetical protein PTRG_02817 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978714|gb|EDU45340.1| hypothetical protein PTRG_02817 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 86
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 34/66 (51%), Gaps = 20/66 (30%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTP------------------EGRRITKLDQILLNG 180
E G L GFDD+VNM+LEDVTE P EG KL +ILLNG
Sbjct: 10 EFTGKLVGFDDYVNMVLEDVTEMYRQPLIAINMDFVTNADGSDPAEGN--IKLPKILLNG 67
Query: 181 NNITML 186
NNI M+
Sbjct: 68 NNICMM 73
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 36 EIVGTLNGFDDFVNMLLEDVTDCHDSHLLS 65
E G L GFDD+VNM+LEDVT+ + L++
Sbjct: 10 EFTGKLVGFDDYVNMVLEDVTEMYRQPLIA 39
>gi|151944828|gb|EDN63087.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 187
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E+ E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSENNAES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ KL++I + G I + L
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQ 82
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
SV + + PL+L+ I RI++ +++D+E+ G L+ FD +NM+L DV E +T E
Sbjct: 2 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVE 60
Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
SV + + PL+L+ I RI++ +++D+E+ G L+ FD +NM+L DV +
Sbjct: 2 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEV 55
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R KL +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFKLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|435851698|ref|YP_007313284.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
gi|433662328|gb|AGB49754.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
Length = 74
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIV-GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V K +GSR+ + MK D ++ G LN DD++N+ L D E + G ++ L
Sbjct: 1 MFPNKRVHKLVGSRVQVEMKGDLHLLEGLLNSADDYLNLHLLDTVEISN---GEKLRSLG 57
Query: 175 QILLNGNNITML 186
++L GNNI ++
Sbjct: 58 SVVLRGNNIILI 69
>gi|256077883|ref|XP_002575229.1| small nuclear ribonucleoprotein G (snrnp-G) [Schistosoma mansoni]
gi|353231785|emb|CCD79140.1| putative small nuclear ribonucleoprotein G (snrnp-G) [Schistosoma
mansoni]
Length = 76
Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++E+VG L GFD F+N+++ D YE T +G +I K+D ++ GN+I
Sbjct: 11 KYLDKRLRLKLNANREVVGVLRGFDAFMNIVVSDA--YEVTKDGNQI-KIDMAVVRGNSI 67
Query: 184 TML 186
++
Sbjct: 68 NIV 70
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
T VA N + PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T
Sbjct: 4 TGEEVAPN-TVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITT 62
Query: 165 PE 166
E
Sbjct: 63 VE 64
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 2 TAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
T VA N + PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 4 TGEEVAPN-TVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEET 59
>gi|323305273|gb|EGA59020.1| Lsm4p [Saccharomyces cerevisiae FostersB]
Length = 187
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E E
Sbjct: 1 MLPLYLLTNAXGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ KL++I + G I + L
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQ 82
>gi|392563452|gb|EIW56631.1| U6 snRNA-associated Sm-like protein LSm7 [Trametes versicolor
FP-101664 SS1]
Length = 94
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK-LDQILLNGNN 182
K + RI + +E+ G L G+D +N++L++V E TP+G T+ L ++L G
Sbjct: 14 KYVNERIRVKFTGGREVTGILKGYDQLLNLVLDEVQENLQTPDGESTTRNLGLVVLRGPT 73
Query: 183 ITML 186
IT+L
Sbjct: 74 ITLL 77
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 106 APSVATNPST---LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
A V P+T PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E
Sbjct: 2 ADEVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETV 61
Query: 163 STPE 166
+T E
Sbjct: 62 TTVE 65
Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 3 APSVATNPST---LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
A V P+T PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 2 ADEVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
N S L PL+LV + R+++ ++ D+EI G L+ +D +NM+L DV E
Sbjct: 10 NTSVLEPLDLVRLSLDERVYVKLRGDREIKGRLHAYDSHLNMVLSDVEE 58
Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
N S L PL+LV + R+++ ++ D+EI G L+ +D +NM+L DV +
Sbjct: 10 NTSVLEPLDLVRLSLDERVYVKLRGDREIKGRLHAYDSHLNMVLSDVEET 59
>gi|440804396|gb|ELR25273.1| u6 snrnaassociated sm-like protein lsm8, putative [Acanthamoeba
castellanii str. Neff]
Length = 94
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLG 187
+ II + + IVGTL GFD F N+++ED E + +G L ++ G+NI ++G
Sbjct: 12 VSIITSDARSIVGTLRGFDQFANVIVEDSHERVYSAQGMEKVPLGLYVIRGDNIAVIG 69
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
SV + + PL+L+ I RI++ +++D+E+ G L+ FD +NM+L DV E +T E
Sbjct: 2 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
SV + + PL+L+ I RI++ +++D+E+ G L+ FD +NM+L DV +
Sbjct: 2 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEV 55
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+N++E+ G LN +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEETVTTVE 65
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G LN +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEET 60
>gi|303315215|ref|XP_003067615.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107285|gb|EER25470.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 144
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
P V + ++ LPL L++ G + + +KN + + G L D ++N+ L++V +++PE
Sbjct: 11 PQVTHSYNSKLPLGLLNASQGHPMLVELKNGETLNGHLVNCDSWMNLTLKEVV--QTSPE 68
Query: 167 GRRITKLDQILLNGNNITML 186
G R +L ++ + GNNI L
Sbjct: 69 GDRFFRLPEVYVRGNNIKFL 88
>gi|302309857|ref|XP_002999588.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049185|emb|CAR58061.1| unnamed protein product [Candida glabrata]
Length = 94
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 36/115 (31%)
Query: 77 GLPMITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKN 136
G ++ PI C ++ Q +T LY +G RI
Sbjct: 7 GKAIVPPINCIFNHLQQQTPVTFWLYEQ---------------------VGIRIR----- 40
Query: 137 DKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRI----TKLDQILLNGNNITML 186
GT+ GFD+F+N++++D E GR + TKL +ILL G+NIT++
Sbjct: 41 -----GTIRGFDEFMNVVIDDAVEVPIEAKSGRELVDQGTKLGRILLKGDNITLI 90
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 106 APSVATNPST---LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
A PST PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E
Sbjct: 2 ADEAEQQPSTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETV 61
Query: 163 STPE 166
+T E
Sbjct: 62 TTVE 65
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 3 APSVATNPST---LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
A PST PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 2 ADEAEQQPSTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
SV + + PL+L+ I RI++ +++D+E+ G L+ FD +NM+L DV E +T E
Sbjct: 1 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 59
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
SV + + PL+L+ I RI++ +++D+E+ G L+ FD +NM+L DV +
Sbjct: 1 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEV 54
>gi|121715750|ref|XP_001275484.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
gi|119403641|gb|EAW14058.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QASPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|344299952|gb|EGW30292.1| hypothetical protein SPAPADRAFT_63138 [Spathaspora passalidarum
NRRL Y-27907]
Length = 87
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
S +TL P+ L+ K + + + + + I G + GFD+F+N++++D E S
Sbjct: 2 SSKQKKATLPPINLIFKFLQHQSQVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAVEI-S 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
T GR+ +L +ILL G+NIT++
Sbjct: 61 TVTGRK-DELGRILLKGDNITLI 82
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V E +T E
Sbjct: 51 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVE 99
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V +
Sbjct: 51 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEE 93
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia malayi]
Length = 136
Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V E +T E
Sbjct: 51 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVE 99
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ FD +NM+L V +
Sbjct: 51 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEE 93
>gi|365761122|gb|EHN02798.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 177
Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I GTL D+++N+ L +VTEY E+ +
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSEENAIDSENNADK 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ KL++I + G I + L
Sbjct: 61 SKAIKLNEIYVRGTFIKFIKLQ 82
Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLL 64
+LPL L+ G ++ I +KN + I GTL D+++N+ L +VT+ + + +
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGTLTNVDNWMNLTLSNVTEYSEENAI 52
>gi|83769760|dbj|BAE59895.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 133
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L
Sbjct: 11 SGRLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRL 68
Query: 174 DQILLNGNNITML 186
++ + GNNI L
Sbjct: 69 PEVYIRGNNIKYL 81
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 67 FASDLINFIWGLPMITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCI 126
+ D + W P + C SR QY Y A + PL+L+ +
Sbjct: 32 ISGDECAWAWEYPELQK-GCYLSRVCQYIPPKQCQYYSVASILQVILPVKEPLDLIRLSL 90
Query: 127 GSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 91 DEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 130
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 82 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 124
>gi|429192031|ref|YP_007177709.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|448324725|ref|ZP_21514137.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
gi|429136249|gb|AFZ73260.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|445617688|gb|ELY71281.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
Length = 75
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHL 63
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT D +
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTSAADESV 53
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--ESTPEGRRITKLDQ 175
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT ES + I D
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTSAADESVTDDESIE--DT 62
Query: 176 ILLNGNNI 183
++ G+N+
Sbjct: 63 TIIRGDNV 70
>gi|605651|gb|AAA58257.1| regulatory protein [Saccharomyces cerevisiae]
gi|190405674|gb|EDV08941.1| U6 snRNA associated protein [Saccharomyces cerevisiae RM11-1a]
gi|207345878|gb|EDZ72558.1| YER112Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271267|gb|EEU06342.1| Lsm4p [Saccharomyces cerevisiae JAY291]
gi|323309425|gb|EGA62642.1| Lsm4p [Saccharomyces cerevisiae FostersO]
gi|323333783|gb|EGA75174.1| Lsm4p [Saccharomyces cerevisiae AWRI796]
gi|323355304|gb|EGA87129.1| Lsm4p [Saccharomyces cerevisiae VL3]
gi|349577787|dbj|GAA22955.1| K7_Lsm4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299814|gb|EIW10906.1| Lsm4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 187
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ KL++I + G I + L
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQ 82
>gi|45184940|ref|NP_982658.1| AAR116Wp [Ashbya gossypii ATCC 10895]
gi|44980549|gb|AAS50482.1| AAR116Wp [Ashbya gossypii ATCC 10895]
gi|374105858|gb|AEY94769.1| FAAR116Wp [Ashbya gossypii FDAG1]
Length = 97
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 36/121 (29%)
Query: 79 PMITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDK 138
PM+ PI C Y+ Q T+T L+ T
Sbjct: 8 PMMPPINCIYNYLQQQTTVTFWLFQQT-------------------------------QM 36
Query: 139 EIVGTLNGFDDFVNMLLEDVTEY---ESTPEGR--RITKLDQILLNGNNITMLGLHTHCG 193
I G ++GFD+F+N+++++ E E + E + R T+L +ILL G+NIT++ G
Sbjct: 37 RIKGRISGFDEFMNVVVDEAVEVPVDEKSGEEQVGRSTRLGRILLKGDNITLITAAEEEG 96
Query: 194 M 194
+
Sbjct: 97 V 97
>gi|398364697|ref|NP_011037.3| Lsm4p [Saccharomyces cerevisiae S288c]
gi|731503|sp|P40070.1|LSM4_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm4
gi|603351|gb|AAC03210.1| Uss1p: core protein of small nuclear ribonucleoprotein
[Saccharomyces cerevisiae]
gi|695736|emb|CAA57975.1| USS1 [Saccharomyces cerevisiae]
gi|285811744|tpg|DAA07772.1| TPA: Lsm4p [Saccharomyces cerevisiae S288c]
Length = 187
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ KL++I + G I + L
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQ 82
>gi|323337992|gb|EGA79231.1| Lsm4p [Saccharomyces cerevisiae Vin13]
Length = 187
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ KL++I + G I + L
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQ 82
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Danio rerio]
Length = 102
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A T + PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T
Sbjct: 5 AEQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTV 64
Query: 166 E 166
E
Sbjct: 65 E 65
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
A T + PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 5 AEQQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|317147121|ref|XP_003189888.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae RIB40]
Length = 121
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 19 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 67
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 19 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 62
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 59
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 54
>gi|60692640|gb|AAX30638.1| SJCHGC06306 protein [Schistosoma japonicum]
gi|226485693|emb|CAX75266.1| putative small nuclear ribonucleoprotein G [Schistosoma japonicum]
gi|226485695|emb|CAX75267.1| putative small nuclear ribonucleoprotein G [Schistosoma japonicum]
gi|226485697|emb|CAX75268.1| putative small nuclear ribonucleoprotein G [Schistosoma japonicum]
Length = 76
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++E+VG L GFD F+N+++ D YE T +G +I K+D ++ GN+I
Sbjct: 11 KYLDKRLRLKLNANREVVGILRGFDAFMNIVVSDA--YEVTKDGTQI-KIDMAVVRGNSI 67
Query: 184 TML 186
++
Sbjct: 68 NIV 70
>gi|342870013|gb|EGU73372.1| hypothetical protein FOXB_16133 [Fusarium oxysporum Fo5176]
Length = 127
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L++V +++PEG R +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVV--QTSPEGDRFVRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|440302928|gb|ELP95234.1| small nuclear ribonucleoprotein G, putative [Entamoeba invadens
IP1]
Length = 88
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
RI++ + ++ I+G L GFD+++N++L+D + S PE + +L QIL+ GN++ L
Sbjct: 21 KRIYVKIHCNRAIIGVLRGFDEYLNLVLDDAFD-ASHPENPQKIQLGQILIRGNSVLSL 78
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
+I P +C + + TH + TA SV+ PL ++ C+ ++++ ++ +E
Sbjct: 95 LILPFSCLIT------SFTHHFHRSTAMSVSE------PLNMIKLCLDEKVYVKLRGARE 142
Query: 140 IVGTLNGFDDFVNMLLEDVTEYEST 164
IVG L+ +D+ N++L D E ST
Sbjct: 143 IVGKLHAYDNHCNLVLGDAVETIST 167
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL ++ C+ ++++ ++ +EIVG L+ +D+ N++L D +
Sbjct: 121 PLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVE 163
>gi|386002990|ref|YP_005921289.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357211046|gb|AET65666.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 65
Score = 43.9 bits (102), Expect = 0.034, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 126 IGSRIHIIMKNDKEIV--GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
IGSRI + MK + V GTLN DD++N+ L++ E +G R L ++L GNNI
Sbjct: 2 IGSRIKVEMKGSQRNVLEGTLNSVDDYLNLHLQETVE---IVDGERARSLGSVILRGNNI 58
Query: 184 TML 186
++
Sbjct: 59 ILI 61
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|238496529|ref|XP_002379500.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|220694380|gb|EED50724.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|391868822|gb|EIT78031.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 121
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|212537193|ref|XP_002148752.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
gi|210068494|gb|EEA22585.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
Length = 170
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N+ L++V + +TPEG R +L +
Sbjct: 53 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQ--TTPEGDRFFRLPE 110
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 111 VYVRGNNIKYL 121
>gi|344231123|gb|EGV63005.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 90
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVT 159
M+ +N + P+ + C+ R+ + + + I G + GFD+F+N++L+D
Sbjct: 1 MSGRERGSNRAMHTPIHTIFTCLQQRLTVSVWLYEQTQSRIEGKIRGFDEFMNIVLDDAI 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
E ST +G + L +I+L G+NIT++
Sbjct: 61 EV-STKDGSK-EDLGRIMLKGDNITLI 85
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 16 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 64
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 16 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 59
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 59
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 54
>gi|259479587|tpe|CBF69945.1| TPA: U6 snRNA-associated Sm-like protein LSM4, putative
(AFU_orthologue; AFUA_2G12020) [Aspergillus nidulans
FGSC A4]
Length = 119
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L +V +++PEG R KL +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVV--QTSPEGDRFFKLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 10 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 58
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 10 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 53
>gi|315051216|ref|XP_003174982.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
gi|311340297|gb|EFQ99499.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
Length = 124
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+LLPL L++ G + + +KN + + G L D+++N+ L++V +++PEG R +L
Sbjct: 3 SLLPLGLLNAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVV--QTSPEGDRFFRLP 60
Query: 175 QILLNGNNITML 186
++ + GNNI L
Sbjct: 61 EVYVRGNNIKYL 72
>gi|119481265|ref|XP_001260661.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|146322938|ref|XP_755534.2| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus fumigatus
Af293]
gi|119408815|gb|EAW18764.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|129558535|gb|EAL93496.2| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus Af293]
Length = 119
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Otolemur
garnettii]
Length = 99
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 14 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 62
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 14 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 57
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nomascus
leucogenys]
Length = 102
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E T +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIETDEETYEEIYK 76
Query: 178 LNGNNITML 186
NI ML
Sbjct: 77 STKRNIPML 85
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|150865716|ref|XP_001385048.2| hypothetical protein PICST_47366 [Scheffersomyces stipitis CBS
6054]
gi|149386972|gb|ABN67019.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 90
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
M++ S L P+ L+ K + + I + + I G + GFD+F+N++++D
Sbjct: 1 MSSHKATGKKSMLPPINLIFKYLQQQSPVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAV 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
E ST +G + +L +ILL G+NIT++
Sbjct: 61 EI-STKDGSK-EELGRILLKGDNITLI 85
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|425765914|gb|EKV04555.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum PHI26]
gi|425779249|gb|EKV17325.1| U6 snRNA-associated Sm-like protein LSM4, putative [Penicillium
digitatum Pd1]
Length = 121
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+F+N++L +V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVTCDNFMNLILREVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|440796303|gb|ELR17412.1| small nuclear ribonucleoprotein e, putative [Acanthamoeba
castellanii str. Neff]
Length = 90
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
+ T P L+ L +K SRI I++ D I G + GFD+++N++L++ E ST
Sbjct: 10 KIMTQPINLIFRFLQNK---SRIQIMLYENTDLRIEGRIIGFDEYMNLVLDEAEEV-STK 65
Query: 166 EGRRITKLDQILLNGNNITML 186
G R T L +ILL G+NITM+
Sbjct: 66 RGTR-TPLGRILLKGDNITMM 85
>gi|196009502|ref|XP_002114616.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582678|gb|EDV22750.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 76
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P EL K + R+ I + ++ +VGTL GFD F+N++L+D E S+ E L ++
Sbjct: 6 PPEL-KKFMEKRLSIKINGNRTVVGTLRGFDPFMNIVLDDTVEQVSSKEN---NHLGMVV 61
Query: 178 LNGNNITML 186
+ GN++ M+
Sbjct: 62 IRGNSVVMM 70
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|408393268|gb|EKJ72533.1| hypothetical protein FPSE_07170 [Fusarium pseudograminearum CS3096]
Length = 139
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
LLPL L++ G + + +KN + + G L D ++N+ L++V +++PEG R +L +
Sbjct: 16 LLPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVV--QTSPEGDRFVRLPE 73
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 74 VYVKGNNIKYL 84
>gi|380478035|emb|CCF43823.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 108
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ + + ++++G L G+D F+N++L++ E + EG +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVEEK---EGGEKVRLGMVVIRGN 64
Query: 182 NITML-GLHTHCGMRP 196
++ ML L G RP
Sbjct: 65 SVVMLEALERIGGRRP 80
>gi|358365662|dbj|GAA82284.1| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus kawachii IFO
4308]
Length = 121
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLASCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
P++L+ + R+++ M+ND+EI G L FD +NM+L +V E +T E
Sbjct: 17 PIDLLRLSLDERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEETITTRE 65
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
P++L+ + R+++ M+ND+EI G L FD +NM+L +V +
Sbjct: 17 PIDLLRLSLDERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEET 60
>gi|453085821|gb|EMF13864.1| LSM-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 84
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++GTL G+D F+N++L++ T ES P G ++ +L ++ GN++
Sbjct: 10 KYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEAT--ESKPNGEKV-RLGMCVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|327401554|ref|YP_004342393.1| Sm ribonucleoprotein-like protein [Archaeoglobus veneficus SNP6]
gi|327317062|gb|AEA47678.1| Like-Sm ribonucleoprotein core [Archaeoglobus veneficus SNP6]
Length = 74
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+LP ++V +G I + MK ++ ++VG L DD++N+ + + EY++ G ++ L
Sbjct: 1 MLPNQMVRSLVGKTIRVEMKGEESDLVGRLESVDDYMNIYMSNAVEYKN---GEKLRNLG 57
Query: 175 QILLNGNNITML 186
++L GNN+ ++
Sbjct: 58 NLVLRGNNVILI 69
>gi|317147119|ref|XP_001821897.2| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae RIB40]
Length = 123
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L ++
Sbjct: 4 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRLPEV 61
Query: 177 LLNGNNITML 186
+ GNNI L
Sbjct: 62 YIRGNNIKYL 71
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|255946281|ref|XP_002563908.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588643|emb|CAP86759.1| Pc20g14300 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 121
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+F+N++L +V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVTCDNFMNLILREVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|448306523|ref|ZP_21496427.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
gi|445597821|gb|ELY51893.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
Length = 75
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT-------EYESTPEGRRI 170
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT E ES E I
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPVGDEVESESPAEDTTI 64
Query: 171 TKLDQIL 177
+ D ++
Sbjct: 65 IRGDNVV 71
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVT 46
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|396458899|ref|XP_003834062.1| similar to small nuclear ribonucleoprotein E [Leptosphaeria
maculans JN3]
gi|312210611|emb|CBX90697.1| similar to small nuclear ribonucleoprotein E [Leptosphaeria
maculans JN3]
Length = 94
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G L GFD+F+N++++D E + PE RR K+ QILL G+NI+++
Sbjct: 41 RIEGKLRGFDEFMNLVIDDAVEVTLAKKDAPEERR--KVGQILLKGDNISLI 90
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + R+++ M+ND+E+ G L FD +NM+L +V E +T E
Sbjct: 17 PLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + R+++ M+ND+E+ G L FD +NM+L +V +
Sbjct: 17 PLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1 [Pan
troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Loxodonta
africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Bos
taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Homo
sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|295674033|ref|XP_002797562.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280212|gb|EEH35778.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 124
Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V ++TPEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVV--QTTPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|21730739|pdb|1LJO|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm2) From
Archaeoglobus Fulgidus At 1.95a Resolution
Length = 77
Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
+ +LP ++V +G I + MK ++ ++VG L G DD++N+ L + E + ++
Sbjct: 2 AMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE---EKVRS 58
Query: 173 LDQILLNGNNITML 186
L +I+L GNN+ ++
Sbjct: 59 LGEIVLRGNNVVLI 72
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTDCHDSH 62
+ +LP ++V +G I + MK ++ ++VG L G DD++N+ L + +C
Sbjct: 2 AMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEE 54
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like protein
LSm3-like [Meleagris gallopavo]
Length = 108
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 23 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 71
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 23 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 65
>gi|378727606|gb|EHY54065.1| small nuclear ribonucleoprotein E [Exophiala dermatitidis
NIH/UT8656]
Length = 94
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYE----STPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E + +PE RR +L QILL G+N++++
Sbjct: 41 RIEGKIRGFDEFMNLVIDDAVEVQLATRDSPEKRR--QLGQILLKGDNVSLI 90
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 15 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 63
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 15 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 58
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 14/95 (14%)
Query: 106 APSVATNPSTL----LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY 161
A + +T PS L P +L+ I R+++ ++ D+E+ GTL+ +D +N++L DV E
Sbjct: 10 AAAASTGPSPLGSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEET 69
Query: 162 --------ESTPEGRRITKL--DQILLNGNNITML 186
ES E R+ K + + + G+++ ++
Sbjct: 70 IYVVDVNDESGSETVRVVKRQSEMLFVRGDSVILV 104
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 3 APSVATNPSTL----LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
A + +T PS L P +L+ I R+++ ++ D+E+ GTL+ +D +N++L DV +
Sbjct: 10 AAAASTGPSPLGSVTEPFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEET 69
>gi|145232181|ref|XP_001399544.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus niger CBS
513.88]
gi|134056455|emb|CAL00622.1| unnamed protein product [Aspergillus niger]
Length = 121
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+ND+E+ G L FD +NM+L DV E +T E
Sbjct: 17 PLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEETITTRE 65
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ M+ND+E+ G L FD +NM+L DV +
Sbjct: 17 PLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEET 60
>gi|225684632|gb|EEH22916.1| U6 snRNP-associated protein Lsm4 [Paracoccidioides brasiliensis
Pb03]
gi|226286829|gb|EEH42342.1| small nuclear ribonucleoprotein [Paracoccidioides brasiliensis
Pb18]
Length = 124
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V ++TPEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVV--QTTPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|333656537|gb|AEF68171.1| Sm-E-like protein [Physarum polycephalum]
Length = 90
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCI--GSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVT 159
M AP P+ L+ + + SRI I + +ND I G + GFD+++N++L+D
Sbjct: 1 MAAPPAKVQKPMTQPINLIFRYLQNKSRIQIWLYEQNDVRIEGRIIGFDEYMNLVLDDAD 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
E ++ L +ILL G+NIT++
Sbjct: 61 EIFVKKNTKK--HLGRILLKGDNITLM 85
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+LV + +I++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 16 PLDLVRLSLDEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVE 64
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+LV + +I++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 16 PLDLVRLSLDEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEET 59
>gi|189210563|ref|XP_001941613.1| small nuclear ribonucleoprotein E [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330923223|ref|XP_003300153.1| hypothetical protein PTT_11315 [Pyrenophora teres f. teres 0-1]
gi|187977706|gb|EDU44332.1| small nuclear ribonucleoprotein E [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311325858|gb|EFQ91754.1| hypothetical protein PTT_11315 [Pyrenophora teres f. teres 0-1]
Length = 93
Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G L GFD+F+N++++D E + PE RR K+ QILL G+NI+++
Sbjct: 41 RIEGKLRGFDEFMNLVIDDAIEVKLAKKDAPEERR--KVGQILLKGDNISLI 90
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ ++ND+E+ G L+ +D +NM+L DV E +T E T +
Sbjct: 17 PLDLIRLSLDERIYVKLRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query: 178 LNGNNITMLGLHTHC 192
NI ML + C
Sbjct: 77 STKRNIPMLFVWGDC 91
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ ++ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKLRNDRELRGRLHAYDQHLNMILGDVEE 59
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 108 SVATNPST----LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
VATN T PL+LV + RI + M+ND+E+ G L+ +D +NM+L DV E +
Sbjct: 3 EVATNEETSNTVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETIT 62
Query: 164 TPE 166
T E
Sbjct: 63 TVE 65
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 5 SVATNPST----LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
VATN T PL+LV + RI + M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 3 EVATNEETSNTVEEPLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEET 60
>gi|225713400|gb|ACO12546.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ M+N++E+ G LN +D +NM+L +V E
Sbjct: 19 PLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVAE 61
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G LN +D +NM+L +V +
Sbjct: 19 PLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVAET 62
>gi|242809941|ref|XP_002485479.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716104|gb|EED15526.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 118
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N+ L++V + +TPEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVVQ--TTPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|448303276|ref|ZP_21493225.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
gi|445593061|gb|ELY47239.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
Length = 75
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT-------EYESTPEGRRI 170
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT E ES E I
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPIGDEVESESPAEDTTI 64
Query: 171 TKLDQIL 177
+ D ++
Sbjct: 65 IRGDNVV 71
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVT 46
>gi|46121885|ref|XP_385496.1| hypothetical protein FG05320.1 [Gibberella zeae PH-1]
Length = 154
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L++V +++PEG R +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVV--QTSPEGDRFVRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI + M+ND+E+ G L+ +D + NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIE 65
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI + M+ND+E+ G L+ +D + NM+L DV +
Sbjct: 17 PLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEET 60
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI + M+ND+E+ G L+ +D + NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIE 65
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI + M+ND+E+ G L+ +D + NM+L DV +
Sbjct: 17 PLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEET 60
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM 5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera sedula
DSM 5348]
Length = 75
Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 120 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLN 179
+L+ + +GS + + +K +KE+ G L +D +N++L D E +S EG+ K+ I++
Sbjct: 7 KLLAESVGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGEGK---KMGTIVIR 63
Query: 180 GNNITML 186
G+N+ ++
Sbjct: 64 GDNVILI 70
>gi|448717214|ref|ZP_21702669.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
gi|445786018|gb|EMA36794.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
Length = 78
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV D
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGNLAGYDQHMNLVLEDVASAAD 50
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES---TPEGRRITKLD 174
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV E R D
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGNLAGYDQHMNLVLEDVASAADGTVADEEREEPIED 64
Query: 175 QILLNGNNITML 186
++ G+N+ +
Sbjct: 65 TTIIRGDNVVSI 76
>gi|303315247|ref|XP_003067631.1| U6 snRNA-associated Sm-like protein LSm1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240107301|gb|EER25486.1| U6 snRNA-associated Sm-like protein LSm1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320035563|gb|EFW17504.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 209
Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 28/122 (22%)
Query: 83 PITCAYSRSHQY-RTLTHLLYTMTAPSVATNPSTLLP---------LELVDKCIGSRIHI 132
P+ +S+ HQ R T AP + + P L P L+L DK ++ +
Sbjct: 40 PVGPPHSQQHQMPRGSTPPQQQGGAPVLPSGPPQLPPQLFTTAAQLLDLTDK----KLVL 95
Query: 133 IMKNDKEIVGTLNGFDDFVNMLLEDVTE-------YESTPEGRRITKLDQILLNGNNITM 185
I+++ ++++G L +D F N++L+D E Y P G L+ G N+ +
Sbjct: 96 ILRDGRKLIGVLRSWDQFANLVLQDTVERVYSGNLYGEEPRGV-------YLVRGENVLL 148
Query: 186 LG 187
LG
Sbjct: 149 LG 150
>gi|289580746|ref|YP_003479212.1| Sm ribonucleoprotein-like protein [Natrialba magadii ATCC 43099]
gi|289530299|gb|ADD04650.1| Like-Sm ribonucleoprotein core [Natrialba magadii ATCC 43099]
Length = 287
Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 83 PITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVG 142
P + S H Y H T+ PS A + PL++++ +G R+ + +K+ E G
Sbjct: 176 PDSRGVSGPHAY---GHWTGTIKCPSTAVFRMSGRPLDVLEASLGERVTVRLKSGDEFAG 232
Query: 143 TLNGFDDFVNMLLE 156
L G+D +N++LE
Sbjct: 233 ELAGYDQHMNLVLE 246
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 4 PSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53
PS A + PL++++ +G R+ + +K+ E G L G+D +N++LE
Sbjct: 197 PSTAVFRMSGRPLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVLE 246
>gi|451995795|gb|EMD88263.1| hypothetical protein COCHEDRAFT_15041 [Cochliobolus heterostrophus
C5]
Length = 92
Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G L GFD+F+N++++D E + PE RR K+ QILL G+NI+++
Sbjct: 39 RIEGKLRGFDEFMNLVIDDAIEVTLAKKDAPEERR--KVGQILLKGDNISLI 88
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR--------R 169
PL+++ + I++ KN +E++G L+ FDD NM+L +VTE +T +G +
Sbjct: 10 PLDMIRLNLDEMIYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITTVDGEPNTNQQPNK 69
Query: 170 ITKLDQ--ILLNGNNITMLGLH 189
+T+ D + + G+++ +L H
Sbjct: 70 VTRRDSRTVFVRGDSLILLSHH 91
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+++ + I++ KN +E++G L+ FDD NM+L +VT+
Sbjct: 10 PLDMIRLNLDEMIYLKCKNGRELIGRLHAFDDHCNMVLSEVTE 52
>gi|169620926|ref|XP_001803874.1| hypothetical protein SNOG_13667 [Phaeosphaeria nodorum SN15]
gi|111057994|gb|EAT79114.1| hypothetical protein SNOG_13667 [Phaeosphaeria nodorum SN15]
Length = 97
Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 12/79 (15%)
Query: 118 PLELVDKCIGSRIHI---IMKN-DKEIVGTLNGFDDFVNMLLEDVTEY------ESTPEG 167
P+ + K + SR I + +N I G L GFD+F+N++++D E + TPE
Sbjct: 17 PINFIFKLLQSRATISVWLYENLGMRIEGKLRGFDEFMNLVIDDAVEVTLANAKKETPEE 76
Query: 168 RRITKLDQILLNGNNITML 186
RR + QILL G+NI+++
Sbjct: 77 RR--SIGQILLKGDNISLI 93
>gi|392571823|gb|EIW64995.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 87
Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITK 172
P+ ++ K + R +++ D I GT+ GFD+F+N+++ED E Y + RR +
Sbjct: 12 PINVIFKNLQQRTKVVIWLYDNIDMRIEGTIIGFDEFMNIVIEDAAEVYVKDAKPRR--E 69
Query: 173 LDQILLNGNNITML 186
L +ILL G+NIT++
Sbjct: 70 LGRILLKGDNITLI 83
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ I R+++ +ND+E+ G L+ FD +NM+L DV E
Sbjct: 5 PLDLIKLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEE 47
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ I R+++ +ND+E+ G L+ FD +NM+L DV +
Sbjct: 5 PLDLIKLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEE 47
>gi|300122577|emb|CBK23146.2| unnamed protein product [Blastocystis hominis]
Length = 61
Score = 43.1 bits (100), Expect = 0.070, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
MK + E G L GFD ++ M+LEDVT T G K+ + L+NG I M+
Sbjct: 1 MKGETEFTGILRGFDAYLTMILEDVTVSTLTNHGVVSNKMSRALVNGRCICMV 53
>gi|350634474|gb|EHA22836.1| hypothetical protein ASPNIDRAFT_127789 [Aspergillus niger ATCC
1015]
Length = 118
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L ++
Sbjct: 2 LPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRLPEV 59
Query: 177 LLNGNNITML 186
+ GNNI L
Sbjct: 60 YVRGNNIKYL 69
>gi|145349245|ref|XP_001419048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579279|gb|ABO97341.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQILLNGNNITML 186
+R+ +I + + IVGTL GFD N++LED E S+ G L ++ G+N+ ++
Sbjct: 12 ARVSVITNDGRHIVGTLRGFDQVTNVILEDCAERVYSSESGVEEAPLGVYMIRGDNVALV 71
Query: 187 G 187
G
Sbjct: 72 G 72
>gi|393219456|gb|EJD04943.1| U6 snRNA-associated Sm-like protein LSm7 [Fomitiporia mediterranea
MF3/22]
Length = 134
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + RI + +E+ G L G+D +N++L+DV E PE R+ + L ++L G
Sbjct: 53 LQKYMNERIRVKFTGGREVTGILKGYDQLLNLVLDDVEEQLHEPEPRKRS-LGLVVLRGP 111
Query: 182 NITML 186
IT+L
Sbjct: 112 TITLL 116
>gi|328768113|gb|EGF78160.1| hypothetical protein BATDEDRAFT_90820 [Batrachochytrium
dendrobatidis JAM81]
Length = 91
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 128 SRIHIIMKNDKEIV--GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SR+ I + EI G + GFD+F+N++L+D E ST G R +L +ILL G+NIT+
Sbjct: 24 SRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEV-STKTGAR-KQLGRILLKGDNITL 81
Query: 186 L 186
Sbjct: 82 F 82
>gi|327349106|gb|EGE77963.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 167
Score = 42.7 bits (99), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL L+ G + + +KN + + G L D+++N++L +V +++PEG R +L ++
Sbjct: 45 LPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILREVV--QTSPEGDRFFRLPEM 102
Query: 177 LLNGNNITML 186
+ GNNI L
Sbjct: 103 YVRGNNIKYL 112
>gi|298675778|ref|YP_003727528.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298288766|gb|ADI74732.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum Z-7303]
Length = 74
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ P + V K +GS++ + MK D ++ G L DD++N+ L + E G R+ L
Sbjct: 1 MFPNKKVHKLLGSKVQVEMKGDLHQLEGVLESVDDYLNLHLVESVE---IANGERLRSLG 57
Query: 175 QILLNGNNITMLG 187
++L GNNI +L
Sbjct: 58 SVVLRGNNIVLLA 70
>gi|11497974|ref|NP_069198.1| snRNP [Archaeoglobus fulgidus DSM 4304]
gi|2650273|gb|AAB90874.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 75
Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+LP ++V +G I + MK ++ ++VG L G DD++N+ L + E + ++ L
Sbjct: 2 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE---EKVRSLG 58
Query: 175 QILLNGNNITML 186
+I+L GNN+ ++
Sbjct: 59 EIVLRGNNVVLI 70
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTDCHDSH 62
+LP ++V +G I + MK ++ ++VG L G DD++N+ L + +C
Sbjct: 2 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEE 52
>gi|240275971|gb|EER39484.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325093332|gb|EGC46642.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H88]
Length = 124
Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLAAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|225563373|gb|EEH11652.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus G186AR]
Length = 124
Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|154281997|ref|XP_001541811.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
gi|150411990|gb|EDN07378.1| hypothetical protein HCAG_03909 [Ajellomyces capsulatus NAm1]
Length = 124
Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|440492813|gb|ELQ75351.1| Small nuclear ribonucleoprotein (snRNP) SMF [Trachipleistophora
hominis]
Length = 113
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P + + +G RI I +K + + GTL+GFDD N+ + V+E+ E R + KL +++
Sbjct: 40 PKQFLKSRLGKRIRISLKWNVDYEGTLDGFDDNFNIEVSSVSEFV---ESRMVGKLKKMV 96
Query: 178 LNGNNITML 186
+ NNI +
Sbjct: 97 IRCNNIKSM 105
>gi|225713042|gb|ACO12367.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus salmonis]
Length = 105
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ M+N++E+ G LN +D +NM+L +V E
Sbjct: 19 PLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVEE 61
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G LN +D +NM+L +V +
Sbjct: 19 PLDLIRLSLDERIYVKMRNERELKGRLNAYDQHLNMILGEVEET 62
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ M+N++E+ G L+ FD +NM+L DV E
Sbjct: 43 PLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEE 85
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G L+ FD +NM+L DV +
Sbjct: 43 PLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEI 86
>gi|212543921|ref|XP_002152115.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
marneffei ATCC 18224]
gi|242787996|ref|XP_002481132.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
stipitatus ATCC 10500]
gi|210067022|gb|EEA21115.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
marneffei ATCC 18224]
gi|218721279|gb|EED20698.1| small nuclear ribonucleoprotein SmE, putative [Talaromyces
stipitatus ATCC 10500]
Length = 94
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 104 MTAPSVATNPSTLL-PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
MT A TLL P+ + K + R I + + I G + GFD+F+N++++D
Sbjct: 1 MTGRGNAGGRKTLLAPIHFIFKLLQQRSTVSIWLYEQLSFRIEGKIRGFDEFMNLVVDDA 60
Query: 159 TEY----ESTPEGRRITKLDQILLNGNNITML 186
E +S E RR L QILL G+N++++
Sbjct: 61 VEVRLATKSEEEKRR--NLGQILLKGDNVSLI 90
>gi|397621038|gb|EJK66072.1| hypothetical protein THAOC_13028 [Thalassiosira oceanica]
Length = 175
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 77 GLPMITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKN 136
GLP + +S LL + S N ++ PLE V K IG+ + I M +
Sbjct: 42 GLPKNREVNFKWSSKSDLPGQGLLLAILGEESSGRNMTS--PLEQVKKFIGAEVRITMDD 99
Query: 137 DKEIVGTLNGFDDFVNMLLEDVTEYES---TPEG 167
+ +VG D N++L+DVTE+ P+G
Sbjct: 100 KRVVVGKFCTLDRMCNIVLKDVTEFRRIGYAPDG 133
>gi|224117550|ref|XP_002331664.1| predicted protein [Populus trichocarpa]
gi|224143797|ref|XP_002325079.1| predicted protein [Populus trichocarpa]
gi|118483404|gb|ABK93602.1| unknown [Populus trichocarpa]
gi|222866513|gb|EEF03644.1| predicted protein [Populus trichocarpa]
gi|222874083|gb|EEF11214.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++LED E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEVNIKKKSRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|366996280|ref|XP_003677903.1| hypothetical protein NCAS_0H02460 [Naumovozyma castellii CBS 4309]
gi|342303773|emb|CCC71556.1| hypothetical protein NCAS_0H02460 [Naumovozyma castellii CBS 4309]
Length = 92
Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 36/112 (32%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
M+ PI C ++ Q T+T L+ +G+RI
Sbjct: 8 MVPPINCIFNFLQQQTTVTFWLFEQ---------------------VGTRIR-------- 38
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE-STPEGRRI----TKLDQILLNGNNITML 186
G ++GFD+F+N++++D E G+ + TKL +ILL G+NIT++
Sbjct: 39 --GKVSGFDEFMNVVIDDAIEIPVDAKTGKELVSKGTKLGRILLKGDNITLI 88
>gi|71012485|ref|XP_758502.1| hypothetical protein UM02355.1 [Ustilago maydis 521]
gi|46098160|gb|EAK83393.1| hypothetical protein UM02355.1 [Ustilago maydis 521]
Length = 175
Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 95 RTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNML 154
R H + +APS +L L K + +I + +E+ GTL GFD +N++
Sbjct: 67 RGGAHNSASSSAPSERPKKEAILDL---SKYMDQKIRVKFAGGREVFGTLKGFDQLMNLV 123
Query: 155 LEDVTEYESTPEGR---RITKLDQILLNGNNITML 186
+++VTE EG + L ++L G +T++
Sbjct: 124 MDEVTESVRDEEGNVTDKTRNLGLVVLRGTALTVI 158
Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 2 TAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+APS +L L K + +I + +E+ GTL GFD +N+++++VT+
Sbjct: 77 SAPSERPKKEAILDL---SKYMDQKIRVKFAGGREVFGTLKGFDQLMNLVMDEVTES 130
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ M+N++E+ G L+ FD +NM+L DV E
Sbjct: 16 PLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEE 58
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G L+ FD +NM+L DV +
Sbjct: 16 PLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEEI 59
>gi|338259|gb|AAB59365.1| small nuclear ribonucleic protein, partial [Homo sapiens]
Length = 92
Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Query: 99 HLLYTMTAPSVATNPST--LLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNML 154
H + P VA S L+ L ++ SRI + + + + I G + GFD+++N++
Sbjct: 1 HFRFRFFIPEVALRGSVRNLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLV 57
Query: 155 LEDVTEYESTPEGRRITKLDQILLNGNNITML 186
L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 58 LDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>gi|433590264|ref|YP_007279760.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|448332329|ref|ZP_21521573.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|448383664|ref|ZP_21562844.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
gi|433305044|gb|AGB30856.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|445627433|gb|ELY80757.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|445659266|gb|ELZ12073.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
Length = 74
Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L+G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLSGYDQHMNLVLEDVT 46
Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 31/42 (73%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
PL++++ +G R+ + +K+ E VG L+G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLSGYDQHMNLVLEDVT 46
>gi|296812049|ref|XP_002846362.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
gi|238841618|gb|EEQ31280.1| small nuclear ribonucleoprotein [Arthroderma otae CBS 113480]
Length = 126
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL L++ G + + +KN + + G L D+++N+ L++V +++PEG R +L ++
Sbjct: 8 LPLGLLNAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVV--QTSPEGDRFFRLPEV 65
Query: 177 LLNGNNITML 186
+ GNNI L
Sbjct: 66 YVRGNNIKYL 75
>gi|448321855|ref|ZP_21511330.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
gi|445602907|gb|ELY56878.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
Length = 75
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHL 63
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV+ D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRAGDREV 53
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV+ D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRAGDREVDDEAPVEDTTI 64
Query: 178 LNGNNI 183
+ G+N+
Sbjct: 65 IRGDNV 70
>gi|397773764|ref|YP_006541310.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
gi|397682857|gb|AFO57234.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
Length = 135
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
T+ PS A + PL++++ +G R+ + +K+ E VG L G+D +N++LEDV
Sbjct: 50 TIKCPSPAVLRMSGRPLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 105
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 4 PSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 55
PS A + PL++++ +G R+ + +K+ E VG L G+D +N++LEDV
Sbjct: 54 PSPAVLRMSGRPLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 105
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L D E +T E T +
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYR 75
Query: 178 LNGNNITML 186
N NI ML
Sbjct: 76 TNKRNIPML 84
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L D +
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEET 59
>gi|320035592|gb|EFW17533.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392868800|gb|EAS34594.2| small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 125
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L++V +++PEG R +L +
Sbjct: 1 MLPLGLLNASQGHPMLVELKNGETLNGHLVNCDSWMNLTLKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKFL 69
>gi|367053583|ref|XP_003657170.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL 8126]
gi|347004435|gb|AEO70834.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL 8126]
Length = 90
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 104 MTAPSVATNPSTLLP-----LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
MT + LLP L+ + +I + + IVGT+ GFD+F+N++++ +
Sbjct: 1 MTGRAAGGGRRVLLPPINFLFRLLQQRSTVQIWLYEQLSIRIVGTIRGFDEFMNLVVKQI 60
Query: 159 TEYESTPEGRRITKLDQILLNGNNITML 186
++ T E RR L QILL G+N++++
Sbjct: 61 SKTNDT-ETRR--PLGQILLKGDNVSLI 85
>gi|430813865|emb|CCJ28830.1| unnamed protein product [Pneumocystis jirovecii]
Length = 129
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE------- 160
++ TNP + L+ C+ ++ +I+++ K+++G L FD + N++L+ E
Sbjct: 2 TLETNPHLFITYTLLHSCLDKKLMVILRDGKKLIGILRSFDQYANLVLQGTVERIYVDQV 61
Query: 161 YESTPEGRRITKLDQILLNGNNITMLG 187
Y P G ++ G N+ ++G
Sbjct: 62 YGDIPRG-------VFIIRGENVVLVG 81
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53
++ TNP + L+ C+ ++ +I+++ K+++G L FD + N++L+
Sbjct: 2 TLETNPHLFITYTLLHSCLDKKLMVILRDGKKLIGILRSFDQYANLVLQ 50
>gi|448317324|ref|ZP_21506880.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
gi|445603844|gb|ELY57797.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
Length = 75
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHL 63
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV+ D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVSRAADREV 53
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI- 176
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV S R + D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDV----SRAADREVEDSDPVE 60
Query: 177 ---LLNGNNITML 186
++ G+N+ +
Sbjct: 61 DTTIIRGDNVVSI 73
>gi|400602043|gb|EJP69668.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 83
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D +E T EG T+L +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDA--FEET-EGGNKTRLGMVVIRGNSV 66
Query: 184 TMLGLHTHCG 193
ML G
Sbjct: 67 VMLEAMERIG 76
>gi|435848032|ref|YP_007310282.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
gi|433674300|gb|AGB38492.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
Length = 75
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHL 63
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV+ D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRAADREV 53
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV+ D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRAADREVDDEDPVEDTTI 64
Query: 178 LNGNNI 183
+ G+N+
Sbjct: 65 IRGDNV 70
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM 3091]
Length = 81
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
N +T PL+ + + + S++ I +K KE G L FD +N++L D E + +G I
Sbjct: 6 NNNNTSRPLDALGQALNSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEIK---DGESI 62
Query: 171 TKLDQILLNGNNITML 186
+L +L+ G+NI +
Sbjct: 63 CRLGVVLVRGDNIVYI 78
>gi|452842262|gb|EME44198.1| hypothetical protein DOTSEDRAFT_71875 [Dothistroma septosporum
NZE10]
Length = 85
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++GTL G+D F+N++L++ T ES P G + +L ++ GN++
Sbjct: 10 KYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEAT--ESKPNGEK-ARLGMCVIRGNSV 66
Query: 184 TML 186
M+
Sbjct: 67 VMM 69
>gi|16081975|ref|NP_394385.1| hypothetical protein Ta0927 [Thermoplasma acidophilum DSM 1728]
gi|10640204|emb|CAC12056.1| hypothetical protein [Thermoplasma acidophilum]
Length = 67
Score = 42.4 bits (98), Expect = 0.12, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILL 178
++++++ + R+ +++K+++ + G L GFD+++NM+L+DV E KL +++
Sbjct: 1 MKMLEESVNKRVSLLLKDNRVLEGVLTGFDEYMNMVLDDVDENSENVS----RKLGTVVV 56
Query: 179 NGNNITML 186
G+N+ +
Sbjct: 57 RGSNVVRI 64
Score = 39.3 bits (90), Expect = 0.97, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 33/42 (78%)
Query: 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
++++++ + R+ +++K+++ + G L GFD+++NM+L+DV +
Sbjct: 1 MKMLEESVNKRVSLLLKDNRVLEGVLTGFDEYMNMVLDDVDE 42
>gi|296817973|ref|XP_002849323.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238839776|gb|EEQ29438.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 95
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 104 MTAPSVATNPSTLL-PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
MT TLL P+ + K + R I + + I G + GFD+F+N++++D
Sbjct: 1 MTGRGQRGGAKTLLAPIHFIFKLLQQRATVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDA 60
Query: 159 TEY----ESTPEGRRITKLDQILLNGNNITML 186
E ++ E RR +L QILL G+N++++
Sbjct: 61 VEVTLATKTEAESRR--QLGQILLKGDNVSLI 90
>gi|226529493|ref|NP_001148430.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195619228|gb|ACG31444.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++LED E R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYINLVLEDAEEINVKKNTRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC 30864]
Length = 106
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 105 TAPSVATNPSTLL--PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
AP A ST + PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV E
Sbjct: 6 AAPGHAEAVSTKVDVPLDLIKLSLDERILVKMRGDRELRGRLHAYDQHLNMILSDVEETV 65
Query: 163 STPE 166
+T E
Sbjct: 66 TTVE 69
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 2 TAPSVATNPSTLL--PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
AP A ST + PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV +
Sbjct: 6 AAPGHAEAVSTKVDVPLDLIKLSLDERILVKMRGDRELRGRLHAYDQHLNMILSDVEET 64
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+ND+E+ G L FD +NM+L +V E +T E
Sbjct: 17 PLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ M+ND+E+ G L FD +NM+L +V +
Sbjct: 17 PLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEET 60
>gi|284166187|ref|YP_003404466.1| Sm ribonucleoprotein-like protein [Haloterrigena turkmenica DSM
5511]
gi|448390930|ref|ZP_21566397.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM 13891]
gi|284015842|gb|ADB61793.1| Like-Sm ribonucleoprotein core [Haloterrigena turkmenica DSM 5511]
gi|445666518|gb|ELZ19179.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM 13891]
Length = 74
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT E+ + + D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGGEYVGDLAGYDQHMNLVLEDVTIPEAGVDEEAPVE-DTTI 63
Query: 178 LNGNNI 183
+ G+N+
Sbjct: 64 IRGDNV 69
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVTVRLKSGGEYVGDLAGYDQHMNLVLEDVT 46
>gi|50549605|ref|XP_502273.1| YALI0D01155p [Yarrowia lipolytica]
gi|49648141|emb|CAG80459.1| YALI0D01155p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
++ + ++D I GTL GFD+F+N++LED + E K+ +I+L G+NIT++
Sbjct: 28 QVWLFEQSDTRIQGTLVGFDEFMNVVLEDAIQICGDKE----RKIGKIMLKGDNITLI 81
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 33/197 (16%)
Query: 23 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH-----DSHLLSYFASDLINFI-- 75
I R+ II+++ + +GT FD +N++L D + ++ ++ F+
Sbjct: 12 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLL 71
Query: 76 WGLPMITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVD------------ 123
G +++ + + P +A +P L +
Sbjct: 72 RGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMARAAGRGMPAMLRECRLDCRDPLGTI 131
Query: 124 -------KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRR 169
+ I R+ II+++ + +GT FD +N++L D E+ PE
Sbjct: 132 GKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREE 191
Query: 170 ITKLDQILLNGNNITML 186
L +LL G NI L
Sbjct: 192 KRVLGFVLLRGENIVSL 208
>gi|315041917|ref|XP_003170335.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|311345369|gb|EFR04572.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
Length = 95
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 104 MTAPSVATNPSTLL-PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
MT TLL P+ + K + R I + + I G + GFD+F+N++++D
Sbjct: 1 MTGRGQRGGAKTLLAPIHFIFKLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDA 60
Query: 159 TEY----ESTPEGRRITKLDQILLNGNNITML 186
E ++ E RR +L QILL G+N++++
Sbjct: 61 VEVKLATKTEAESRR--QLGQILLKGDNVSLI 90
>gi|365766129|gb|EHN07630.1| Lsm4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 187
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ K ++I + G I + L
Sbjct: 61 SKAVKSNEIYIRGTFIKFIKLQ 82
>gi|414875727|tpg|DAA52858.1| TPA: hypothetical protein ZEAMMB73_852117, partial [Zea mays]
Length = 177
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
+RI I + + D I G + GFD+++N++LED E R+ L +ILL G+NIT+
Sbjct: 114 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKT--LGRILLKGDNITL 171
Query: 186 L 186
+
Sbjct: 172 M 172
>gi|297459953|ref|XP_002700818.1| PREDICTED: uncharacterized protein LOC100296197 [Bos taurus]
Length = 182
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + +I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 119 SRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKTKSRK--QLGRIMLKGDNITL 176
Query: 186 L 186
L
Sbjct: 177 L 177
>gi|297480322|ref|XP_002707759.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC100296197 [Bos taurus]
gi|296482627|tpg|DAA24742.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 182
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + +I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 119 SRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKTKSRK--QLGRIMLKGDNITL 176
Query: 186 L 186
L
Sbjct: 177 L 177
>gi|261195536|ref|XP_002624172.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis SLH14081]
gi|239588044|gb|EEQ70687.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis SLH14081]
gi|239610465|gb|EEQ87452.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 124
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L +V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLILREVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 MYVRGNNIKYL 69
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + K + S + I +K ++E G L FD +N++L+D E E +G + +L +L
Sbjct: 10 PLDALGKAVNSPVLIKLKGEREFRGILKSFDLHMNLVLDDAEELE---KGEVLRRLGTVL 66
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 67 IRGDNIV 73
>gi|448329423|ref|ZP_21518722.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
gi|445613929|gb|ELY67615.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
Length = 75
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E +G L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYIGELAGYDQHMNLVLEDVT 46
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
PL++++ +G R+ + +K+ E +G L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYIGELAGYDQHMNLVLEDVT 46
>gi|398397857|ref|XP_003852386.1| hypothetical protein MYCGRDRAFT_104681 [Zymoseptoria tritici
IPO323]
gi|339472267|gb|EGP87362.1| hypothetical protein MYCGRDRAFT_104681 [Zymoseptoria tritici
IPO323]
Length = 93
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ + + ++++GTL G+D F+N++L++ T ES P ++ +L ++ GN
Sbjct: 8 LKKYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEAT--ESKPNAEKV-RLGMCVIRGN 64
Query: 182 NITML 186
++ M+
Sbjct: 65 SVVMM 69
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata strain
Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEGRR 169
PL+++ + I++ KN +E+VG L+ FD+ NM+L DVTE S E +
Sbjct: 10 PLDMIRLNLDEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNETTK 69
Query: 170 ITKLDQ--ILLNGNNITMLG 187
+TK D I + G+++ +L
Sbjct: 70 VTKRDNGTIFVRGDSLVLLS 89
Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+++ + I++ KN +E+VG L+ FD+ NM+L DVT+
Sbjct: 10 PLDMIRLNLDEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTE 52
>gi|226291004|gb|EEH46432.1| small nuclear ribonucleoprotein SmG [Paracoccidioides brasiliensis
Pb18]
Length = 79
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ + + +++++G L G+D F+N++L++ E +S E +L +++ GN
Sbjct: 8 LKKYMEKRLFVQINGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEK---VRLGMVVIRGN 64
Query: 182 NITMLGLHTHC 192
++ ML + + C
Sbjct: 65 SVVMLEVCSPC 75
>gi|261204379|ref|XP_002629403.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis
SLH14081]
gi|239587188|gb|EEQ69831.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis
SLH14081]
gi|239614272|gb|EEQ91259.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis ER-3]
gi|327356357|gb|EGE85214.1| small nuclear ribonucleoprotein E [Ajellomyces dermatitidis ATCC
18188]
Length = 94
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 104 MTAPSVATNPSTLL-PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
MT TLL P+ + K + R I + + I G + GFD+F+N++++D
Sbjct: 1 MTGRGGGAGRKTLLAPIHFIFKLLQQRSTVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDA 60
Query: 159 TEYE---STPEGRRITKLDQILLNGNNITML 186
E T E +R +L QILL G+N++++
Sbjct: 61 VEVRLATKTEEEKR-RQLGQILLKGDNVSLI 90
>gi|340960256|gb|EGS21437.1| hypothetical protein CTHT_0032950 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 769
Score = 41.6 bits (96), Expect = 0.17, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D ++N+ L +V + ++PEG + +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVVQ--TSPEGDKFMRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ FD +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ FD +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEET 55
>gi|348586080|ref|XP_003478798.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia porcellus]
Length = 92
Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +R I + + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEETHSRTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
QI+L G+NIT+L
Sbjct: 75 GQIMLKGDNITLL 87
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ FD +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ FD +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEET 55
>gi|448313624|ref|ZP_21503337.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
gi|445597557|gb|ELY51631.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
Length = 75
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVT 46
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVT 46
>gi|323348917|gb|EGA83154.1| Lsm4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 187
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNXES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ K ++I + G I + L
Sbjct: 61 SKAVKXNEIYIRGTFIKFIKLQ 82
>gi|294659407|ref|XP_461772.2| DEHA2G05192p [Debaryomyces hansenii CBS767]
gi|199433937|emb|CAG90229.2| DEHA2G05192p [Debaryomyces hansenii CBS767]
Length = 90
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 106 APSVATNPSTLLP-LELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
+ S TN T++P + L+ K + + I + + I G + GFD+F+N++++D E
Sbjct: 2 SSSAKTNKKTMIPPINLIFKYLQQQSPVTIWLYEQTHSRIQGKIRGFDEFMNVVIDDAME 61
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
+T +G + +L +ILL G+NIT++
Sbjct: 62 V-NTNDGSK-EELGRILLKGDNITLI 85
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ----IL 177
+ K I RI + +++D+ +VG L FD +N++L D EY +G +L + I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEESKELKRSLGLIM 60
Query: 178 LNGNNI 183
L G NI
Sbjct: 61 LRGENI 66
>gi|340379367|ref|XP_003388198.1| PREDICTED: small nuclear ribonucleoprotein E-like [Amphimedon
queenslandica]
Length = 93
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
V P L+ L +K SR+ + + + + I G + GFD+F+N+++ D E
Sbjct: 9 QKVMVQPINLIFRYLQNK---SRVQVWLYGRQNMRIEGVITGFDEFMNLVMSDAEEVYLK 65
Query: 165 PEGRRITKLDQILLNGNNITML 186
E R+ ++ +ILL G+N+T++
Sbjct: 66 TETRK--RIGRILLRGDNVTLI 85
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL++V + RI++ M+N++E+ G L+ +D +NM+L DV E
Sbjct: 17 PLDMVRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDVEE 59
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL++V + RI++ M+N++E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDMVRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDVEE 59
>gi|327298737|ref|XP_003234062.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS 118892]
gi|326464240|gb|EGD89693.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS 118892]
gi|326472547|gb|EGD96556.1| small nuclear ribonucleoprotein SmE [Trichophyton tonsurans CBS
112818]
gi|326484188|gb|EGE08198.1| small nuclear ribonucleoprotein SmE [Trichophyton equinum CBS
127.97]
Length = 95
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 104 MTAPSVATNPSTLL-PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
MT TLL P+ + K + R I + + I G + GFD+F+N++++D
Sbjct: 1 MTGRGQRGGAKTLLAPIHFIFKLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDA 60
Query: 159 TEY----ESTPEGRRITKLDQILLNGNNITML 186
E ++ E RR +L QILL G+N++++
Sbjct: 61 VEVKLATKTEEESRR--QLGQILLKGDNVSLI 90
>gi|55632867|ref|XP_520443.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + +I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>gi|426257308|ref|XP_004022271.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Ovis aries]
Length = 92
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 97 LTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIV--GTLNGFDDFVNML 154
+T+ V P L+ L +K S+I + + I G + GFD++VN++
Sbjct: 1 MTYWSQGQKVQKVMVQPINLIFRYLQNK---SQIQVWLYEQVNIWIEGCIIGFDEYVNLV 57
Query: 155 LEDVTEYESTPEGRRITKLDQILLNGNNITMLGL 188
L+D E S + R+ +L I+L G+NIT+L +
Sbjct: 58 LDDAEEIHSKTKSRK--QLGWIMLKGDNITLLQI 89
>gi|412991245|emb|CCO16090.1| U6 snRNA-associated Sm-like protein LSm3 [Bathycoccus prasinos]
Length = 114
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+LV + R+++ ++ND+E+ G L+ +D +NMLL +V E
Sbjct: 29 PLDLVRLSLDERVYVKLRNDRELRGKLHSYDQHLNMLLGEVEE 71
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+LV + R+++ ++ND+E+ G L+ +D +NMLL +V +
Sbjct: 29 PLDLVRLSLDERVYVKLRNDRELRGKLHSYDQHLNMLLGEVEEI 72
>gi|390599071|gb|EIN08468.1| LSM-domain-containing protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 95
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY-ESTPEGRRITKLDQILLNGNNIT 184
+ R+ +++++ + IVGTL+GFD N++L D TE ST EG L L+ G+ I
Sbjct: 8 VDRRVLLVLQDGRSIVGTLSGFDQKSNVVLSDSTERIYSTDEGVEEVPLGLYLVKGDMIA 67
Query: 185 MLG 187
++G
Sbjct: 68 LIG 70
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
AP+ A PL+LV + +I++ M+N++E+ G L+ +D +NM+L DV E
Sbjct: 8 APTTAVEE----PLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEE 58
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
AP+ A PL+LV + +I++ M+N++E+ G L+ +D +NM+L DV +
Sbjct: 8 APTTAVEE----PLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEET 59
>gi|308806556|ref|XP_003080589.1| Small Nuclear ribonucleoprotein splicing factor (ISS) [Ostreococcus
tauri]
gi|116059050|emb|CAL54757.1| Small Nuclear ribonucleoprotein splicing factor (ISS) [Ostreococcus
tauri]
Length = 110
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY-ESTPEGRRITKLDQILLNGNNI 183
+R+H++ + + +VGTL GFD N++LED E S+ G L ++ G+N+
Sbjct: 14 ARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAERVYSSESGVEEAPLGVYMIRGDNV 70
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 25 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+R+H++ + + +VGTL GFD N++LED +
Sbjct: 14 ARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAE 46
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+LV IG RI++ + D+E+ G L+ +D +NM+L +V E
Sbjct: 7 PLDLVKLSIGERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEE 49
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+LV IG RI++ + D+E+ G L+ +D +NM+L +V +
Sbjct: 7 PLDLVKLSIGERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEE 49
>gi|225679918|gb|EEH18202.1| hypothetical protein PABG_00765 [Paracoccidioides brasiliensis
Pb03]
gi|226291688|gb|EEH47116.1| hypothetical protein PADG_03214 [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 104 MTAPSVATNPSTLL-PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
MT TLL P+ + K + R I + + I G + GFD+F+N++++D
Sbjct: 1 MTGRGGGGGRKTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDDA 60
Query: 159 TEYE--STPEGRRITKLDQILLNGNNITML 186
E + E R +L QILL G+N++++
Sbjct: 61 VEVRLATKTEEERKRQLGQILLKGDNVSLI 90
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ----IL 177
+ K I RI + +++D+ +VG L FD +N++L D EY +G +L + I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 178 LNGNNI 183
L G NI
Sbjct: 61 LRGENI 66
>gi|340960769|gb|EGS21950.1| small nuclear ribonucleoprotein E-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 98
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 7/53 (13%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYE-----STPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E + + PE +R L QILL G+NI+++
Sbjct: 41 RITGVIRGFDEFMNLVIDDAVEIKLSPKTNEPESKR--PLGQILLKGDNISLI 91
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY-ESTPE 166
+V T PL+LV + + + ++ +E+ G L G+D NM+L D EY PE
Sbjct: 3 TVRTEQQQQEPLDLVRYQLDELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPE 62
Query: 167 GRR-ITK-LDQILLNGNNITML 186
G+ +TK D + + G+++ ++
Sbjct: 63 GQEPVTKNTDMVFVRGDSVILI 84
>gi|448338508|ref|ZP_21527554.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|448345677|ref|ZP_21534566.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
gi|445622626|gb|ELY76076.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|445633610|gb|ELY86797.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
Length = 75
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDVT 46
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDVT 46
>gi|109484106|ref|XP_001064438.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|293349553|ref|XP_002727191.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 97 LTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNML 154
+ +L V P L+ L ++ SRI + + + + I G + GFD+++N++
Sbjct: 1 MAYLGQGQKVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLV 57
Query: 155 LEDVTEYESTPEGRRITKLDQILLNGNNITML 186
L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 58 LDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>gi|193848588|gb|ACF22772.1| small nuclear ribonucleoprotein E [Brachypodium distachyon]
Length = 79
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 126 IGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
I +RI I + + D I G + GFD+++N++LED E R+ L +ILL G+NI
Sbjct: 14 IKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRK--SLGRILLKGDNI 71
Query: 184 TML 186
T++
Sbjct: 72 TLM 74
>gi|213406934|ref|XP_002174238.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
gi|212002285|gb|EEB07945.1| U6 snRNP-associated protein Lsm4 [Schizosaccharomyces japonicus
yFS275]
Length = 119
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G I + +KN + G L D+++N+ L++V ++ PEG + ++ +
Sbjct: 1 MLPLTLLNAAQGRPILVELKNGETFNGHLEKCDNYMNLTLQEVI--QTMPEGDKFFRMPE 58
Query: 176 ILLNGNNITML 186
+ GNNI L
Sbjct: 59 CYIRGNNIKYL 69
>gi|402216859|gb|EJT96942.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 132
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ + + +KN + + G L D+F+N+ L +V Y+++PEG R KL +
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETLNGHLVNCDNFMNITLREV--YQTSPEGDRFWKLKE 58
Query: 176 ILLNGNNITML 186
+ G+ I L
Sbjct: 59 CYVRGSTIKYL 69
>gi|259480327|tpe|CBF71356.1| TPA: small nuclear ribonucleoprotein SmE, putative (AFU_orthologue;
AFUA_7G05980) [Aspergillus nidulans FGSC A4]
Length = 94
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 110 ATNPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY---- 161
A + L P+ + K + R I + + I G + GFD+F+N++++D E
Sbjct: 8 AARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLAT 67
Query: 162 ESTPEGRRITKLDQILLNGNNITML 186
+S E RR L QILL G+N++++
Sbjct: 68 KSEEEKRR--PLGQILLKGDNVSLI 90
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 118 PLELVDKCIGSRIHII--MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK--- 172
P+ L+ + + +R +I ++N+ +I+ + FD NM+LE+V E S EG++I+
Sbjct: 29 PMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENVKEIWSEREGKKISNKER 88
Query: 173 -LDQILLNGNNITML 186
+ ++ L G+++ ++
Sbjct: 89 FISKLFLRGDSVIVV 103
>gi|119589572|gb|EAW69166.1| hCG23490, isoform CRA_a [Homo sapiens]
Length = 92
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P +L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPISLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGGNITLL 87
>gi|442761385|gb|JAA72851.1| Putative u6 small nuclear rna associated, partial [Ixodes ricinus]
Length = 148
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
AP+ A PL+LV + +I++ M+N++E+ G L+ +D +NM+L DV E
Sbjct: 54 APTTAVEE----PLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEE 104
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
AP+ A PL+LV + +I++ M+N++E+ G L+ +D +NM+L DV +
Sbjct: 54 APTTAVEE----PLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEE 104
>gi|440911215|gb|ELR60916.1| Small nuclear ribonucleoprotein E, partial [Bos grunniens mutus]
Length = 91
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + +I G + GFD+++N++L+D E
Sbjct: 8 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIH 64
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 65 SKTKSRK--QLGRIMLKGDNITLL 86
>gi|327304028|ref|XP_003236706.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326462048|gb|EGD87501.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 121
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N+ L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|224004408|ref|XP_002295855.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585887|gb|ACI64572.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 109
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNI 183
R+ +++++ + +VGTL FD F NM+LED +E E+T + KL ++ G+ +
Sbjct: 15 QRMLVVLRDGRHLVGTLRTFDQFANMVLEDTSERRILGETTTCYQADVKLGLYVVRGDVV 74
Query: 184 TMLGLHTHCGMRPYIQH 200
++G G + IQ+
Sbjct: 75 VLMGEVDDEGSQEVIQY 91
Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 25 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
R+ +++++ + +VGTL FD F NM+LED ++
Sbjct: 15 QRMLVVLRDGRHLVGTLRTFDQFANMVLEDTSE 47
>gi|357146132|ref|XP_003573886.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++LED E R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLEDAEEINIKKNTRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|126466194|ref|YP_001041303.1| LSM family small nuclear ribonucleoprotein [Staphylothermus marinus
F1]
gi|126015017|gb|ABN70395.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 91
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
P T PL+ + + + + +K+ E +GTLN D +N++L + EY +G+ I
Sbjct: 5 KPKTATPLKYLKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEYGD--DGKPIA 62
Query: 172 KLDQILLNGNNITMLGLH 189
+ ++L+ G++I + ++
Sbjct: 63 RYGKVLIRGSHIVFISIN 80
>gi|356508935|ref|XP_003523208.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|356516401|ref|XP_003526883.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|388501720|gb|AFK38926.1| unknown [Lotus japonicus]
Length = 88
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
V T P L+ L K +RI I + + D I G + GFD+++N++L+D E
Sbjct: 6 VQRVMTQPINLIFRFLQSK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+ R+ L +ILL G+NIT++
Sbjct: 63 KKKSRKT--LGRILLKGDNITLM 83
>gi|383413025|gb|AFH29726.1| small nuclear ribonucleoprotein E [Macaca mulatta]
Length = 92
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVVVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>gi|357145040|ref|XP_003573502.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++LED E R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|356562483|ref|XP_003549500.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|255628153|gb|ACU14421.1| unknown [Glycine max]
Length = 88
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
V T P L+ L K +RI I + + D I G + GFD+++N++L+D E
Sbjct: 6 VQRVMTQPINLIFRFLQSK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVSI 62
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+ R+ L +ILL G+NIT++
Sbjct: 63 KKKSRKT--LGRILLKGDNITLM 83
>gi|195606896|gb|ACG25278.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195611048|gb|ACG27354.1| small nuclear ribonucleoprotein E [Zea mays]
gi|413947730|gb|AFW80379.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++LED E R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|293356012|ref|XP_002728814.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392337758|ref|XP_003753347.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + +I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 61
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 56
>gi|380477058|emb|CCF44358.1| small nuclear ribonucleoprotein [Colletotrichum higginsianum]
Length = 170
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 104 MTAPSVAT-NPSTL---LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
+AP V+ +P TL LPL L++ G + + +KN + + G L D ++N+ L++V
Sbjct: 24 QSAPFVSCYDPLTLPSQLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVV 83
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
+ ++PEG + K+ ++ + GNNI L
Sbjct: 84 Q--TSPEGDKFVKIPEVYVKGNNIKYL 108
>gi|449444030|ref|XP_004139778.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis sativus]
gi|449444032|ref|XP_004139779.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis sativus]
gi|449502888|ref|XP_004161771.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis sativus]
Length = 88
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|326470583|gb|EGD94592.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS 112818]
gi|326484638|gb|EGE08648.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 121
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N+ L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDNWMNLTLKEVV--QTSPEGDRFFRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>gi|74747670|sp|Q5VYJ4.1|RUEL1_HUMAN RecName: Full=Putative small nuclear ribonucleoprotein polypeptide
E-like protein 1
Length = 92
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +R I + + + +I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum aestivum]
Length = 98
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 56
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 61
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 56
>gi|393247771|gb|EJD55278.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 136
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 121 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNG 180
LVD C+ ++ +++++ +++VG L +D F N++LED E + + L+ G
Sbjct: 13 LVD-CVDKKMLVVLRDGRKLVGVLRSYDQFANLVLEDTIERFYHGQNYGEVRRGVFLIRG 71
Query: 181 NNITMLG 187
N+ +LG
Sbjct: 72 ENVVLLG 78
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 55
>gi|195638708|gb|ACG38822.1| small nuclear ribonucleoprotein E [Zea mays]
gi|223945527|gb|ACN26847.1| unknown [Zea mays]
gi|414875728|tpg|DAA52859.1| TPA: Small nuclear ribonucleoprotein E isoform 1 [Zea mays]
gi|414875729|tpg|DAA52860.1| TPA: Small nuclear ribonucleoprotein E isoform 2 [Zea mays]
Length = 88
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++LED E R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKT--L 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|392334358|ref|XP_002725436.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392355007|ref|XP_002728648.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 9/84 (10%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
V PS+L+ L ++ SRI + + + + I G + GFD+++N++L+D E S
Sbjct: 10 VQKVMVQPSSLIIRYLQNR---SRIQVWLYEQVNMWIEGCIIGFDEYMNLVLDDTEEIHS 66
Query: 164 -TPEGRRITKLDQILLNGNNITML 186
T G+ +L QI+L G+NI +L
Sbjct: 67 KTKSGK---QLGQIMLKGDNIALL 87
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 36 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 84
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 36 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 79
>gi|154300461|ref|XP_001550646.1| hypothetical protein BC1G_11054 [Botryotinia fuckeliana B05.10]
gi|347828363|emb|CCD44060.1| similar to small nuclear ribonucleoprotein g [Botryotinia
fuckeliana]
Length = 85
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E EG K+ +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVE---EKEGGEKVKIGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 19 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 67
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 19 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 62
>gi|393228545|gb|EJD36188.1| U6 snRNA-associated Sm-like protein LSm7 [Auricularia delicata
TFB-10046 SS5]
Length = 116
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
RI + +E+ G L G+D +N++L+DV E PE R KL +L G +T+L
Sbjct: 42 ERIRVKFTGGREVTGILKGYDQLLNLVLDDVEEVIQEPEP-RTRKLGLAVLRGPTVTLL 99
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Brachypodium distachyon]
Length = 98
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 56
>gi|294887859|ref|XP_002772254.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus ATCC
50983]
gi|239876324|gb|EER04070.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus ATCC
50983]
Length = 87
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
RI + + D+ +VG + G+D F+N++L++ E S E R I +++ GN+I M
Sbjct: 23 KRIDVKLNADRHVVGVVRGYDQFMNLVLDNAVELVSRTEKREIG---MVVIRGNSILM 77
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 55
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 55
>gi|336253861|ref|YP_004596968.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
gi|335337850|gb|AEH37089.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
Length = 75
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L G+D +N++LED T
Sbjct: 5 PLDILEASLGERVTVRLKSGDEYVGELTGYDQHMNLVLEDAT 46
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
PL++++ +G R+ + +K+ E VG L G+D +N++LED T
Sbjct: 5 PLDILEASLGERVTVRLKSGDEYVGELTGYDQHMNLVLEDAT 46
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 107 PSV-ATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTE--Y 161
P+V A N S P L+D+CI R+ ++ +++K++ GTL +D N+++E V E
Sbjct: 230 PAVHAANGSPRTPFTLLDRCITDRVPCLVSCRHNKKLYGTLRAYDKHFNLIMEHVREIWQ 289
Query: 162 ESTPE 166
ES P+
Sbjct: 290 ESQPD 294
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 4 PSV-ATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTD 57
P+V A N S P L+D+CI R+ ++ +++K++ GTL +D N+++E V +
Sbjct: 230 PAVHAANGSPRTPFTLLDRCITDRVPCLVSCRHNKKLYGTLRAYDKHFNLIMEHVRE 286
>gi|433638868|ref|YP_007284628.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
gi|433290672|gb|AGB16495.1| small nuclear ribonucleoprotein [Halovivax ruber XH-70]
Length = 99
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE---YESTPEG--RRITK 172
PL++++ +G R+ + +K E VG L G+D +N++LE+ E+TP +
Sbjct: 24 PLDVLEAALGDRVRVHLKTGTEYVGELAGYDQHMNLVLEEAERTATSETTPANGDEETSS 83
Query: 173 LDQILLNGNNI 183
D ++ G+N+
Sbjct: 84 QDTTIIRGDNV 94
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 55
PL++++ +G R+ + +K E VG L G+D +N++LE+
Sbjct: 24 PLDVLEAALGDRVRVHLKTGTEYVGELAGYDQHMNLVLEEA 64
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 55
>gi|255629853|gb|ACU15277.1| unknown [Glycine max]
Length = 88
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
V T P L+ L K +RI I + + D I G + GFD+++N++L+D E
Sbjct: 6 VQRVMTQPINLIFRFLQGK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+ R+ L +ILL G+NIT++
Sbjct: 63 KKKSRKT--LGRILLKGDNITLM 83
>gi|392575745|gb|EIW68877.1| hypothetical protein TREMEDRAFT_39244 [Tremella mesenterica DSM
1558]
Length = 94
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
V+ + + +I+ + + IVG L G+D N++L D E E + EG + L ++ G+
Sbjct: 4 VEAYVDHTVQVILYDGRVIVGKLRGYDPRTNLILSDCVEREYSLEGVEMVPLGLYMIKGD 63
Query: 182 NITMLG 187
N+ ++G
Sbjct: 64 NVAIIG 69
>gi|353227274|emb|CCA77787.1| probable small nuclear ribonucleoprotein E [Piriformospora indica
DSM 11827]
Length = 87
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++++D TE T EGR L +ILL G NIT++
Sbjct: 37 RIEGRIIGFDEYMNVVMDDATEV-YTKEGRPSVPLGRILLKGENITLI 83
>gi|241956256|ref|XP_002420848.1| small nuclear ribonucleoprotein E (snRNP-E), putative [Candida
dubliniensis CD36]
gi|223644191|emb|CAX41000.1| small nuclear ribonucleoprotein E (snRNP-E), putative [Candida
dubliniensis CD36]
Length = 86
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Query: 108 SVATNPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
S T + L P+ L+ K + + I + + I G + GFD+F+N++++D E +
Sbjct: 3 SKQTKQTNLPPINLIFKFLQQQSVVTIWLYEQTQSRIQGKIRGFDEFMNIVIDDAVELSN 62
Query: 164 TPEGRRITKLDQILLNGNNITML 186
G++ ++L +ILL G+NIT++
Sbjct: 63 ---GKK-SELGRILLKGDNITLI 81
>gi|367051545|ref|XP_003656151.1| hypothetical protein THITE_2120569 [Thielavia terrestris NRRL 8126]
gi|347003416|gb|AEO69815.1| hypothetical protein THITE_2120569 [Thielavia terrestris NRRL 8126]
Length = 83
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E + E KL +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDNGE---KAKLGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|440908733|gb|ELR58720.1| hypothetical protein M91_20943, partial [Bos grunniens mutus]
Length = 91
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDV 158
T + P+ L+ + + +R HI + + + I G + GFD++ N++L+D
Sbjct: 1 TYRGQGQKVQKVMVQPINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDA 60
Query: 159 TEYESTPEGRRITKLDQILLNGNNITML 186
E S + R+ +L +I+L G+NIT++
Sbjct: 61 EEIHSKTKSRK--QLGRIMLKGDNITLI 86
>gi|301783571|ref|XP_002927201.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 98
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 96 TLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNM 153
T+ + V P L+ L ++ SRI + + + + I G + GFD+++N+
Sbjct: 6 TMVYRGQGQKVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNL 62
Query: 154 LLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 63 VLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 93
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 55
>gi|367030948|ref|XP_003664757.1| hypothetical protein MYCTH_2119714 [Myceliophthora thermophila ATCC
42464]
gi|347012028|gb|AEO59512.1| hypothetical protein MYCTH_2119714 [Myceliophthora thermophila ATCC
42464]
Length = 83
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E + E KL +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDNGEK---VKLGMVVIRGNSV 66
Query: 184 TMLGLHTHCG 193
ML G
Sbjct: 67 VMLEALERIG 76
>gi|299740998|ref|XP_001834148.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea okayama7#130]
gi|298404507|gb|EAU87644.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea okayama7#130]
Length = 107
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 106 APSVATNPSTLLPLELV---DKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
APS + P+ E + K + +I + +E++G L G+D +N++L++V E
Sbjct: 7 APSSSGPPADKPKREAILDLSKYVNEKIRVKFTGGREVIGVLKGYDQLLNLVLDEVEEEV 66
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + L ++L G IT+L
Sbjct: 67 SASNPYKKRSLGLVVLRGPTITLL 90
>gi|149235887|ref|XP_001523821.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452197|gb|EDK46453.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 86
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 108 SVATNPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
S + S L P+ L+ K + + I + + D I G + GFD+F+N++ V E E
Sbjct: 3 SQSLKKSNLPPINLIFKFLQQQSLVTIWLYEQIDYRIQGKILGFDEFMNLV---VDEAEE 59
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+G+R TKL ++LL G+ IT++
Sbjct: 60 LADGKR-TKLGRLLLKGDTITLI 81
>gi|444313583|ref|XP_004177449.1| hypothetical protein TBLA_0A01310 [Tetrapisispora blattae CBS 6284]
gi|387510488|emb|CCH57930.1| hypothetical protein TBLA_0A01310 [Tetrapisispora blattae CBS 6284]
Length = 103
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY 161
I SR+H+ + D+ IVGTL D VN+LL DV E+
Sbjct: 10 INSRLHVTIDKDRHIVGTLVALDSQVNLLLNDVVEF 45
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 20/90 (22%)
Query: 23 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINFIWGLPMIT 82
I SR+H+ + D+ IVGTL D VN+LL DV + +I
Sbjct: 10 INSRLHVTIDKDRHIVGTLVALDSQVNLLLNDVVE--------------------FSVIR 49
Query: 83 PITCAYSRSHQYRTLTHLLYTMTAPSVATN 112
P T + S H+ + T L ++ P + N
Sbjct: 50 PSTESDSDKHEAQQYTRKLGLVSIPRSSIN 79
>gi|387018116|gb|AFJ51176.1| Small nuclear ribonucleoprotein E [Crotalus adamanteus]
Length = 92
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>gi|356547766|ref|XP_003542280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|255627911|gb|ACU14300.1| unknown [Glycine max]
Length = 88
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
V T P L+ L K +RI I + + D I G + GFD+++N++L+D E
Sbjct: 6 VQRVMTQPINLIFRFLQSK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNI 62
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+ R+ L +ILL G+NIT++
Sbjct: 63 KKKSRKT--LGRILLKGDNITLM 83
>gi|395531172|ref|XP_003767656.1| PREDICTED: uncharacterized protein LOC100930096 [Sarcophilus
harrisii]
Length = 226
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 163 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 220
Query: 186 L 186
L
Sbjct: 221 L 221
>gi|395734016|ref|XP_003776336.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pongo abelii]
Length = 92
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDAEEVH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>gi|148707696|gb|EDL39643.1| small nuclear ribonucleoprotein E, isoform CRA_a [Mus musculus]
Length = 105
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 96 TLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNM 153
T+ + V P L+ L ++ SRI + + + + I G + GFD+++N+
Sbjct: 13 TMAYRGQGQKVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNL 69
Query: 154 LLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 70 VLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 100
>gi|115474803|ref|NP_001060998.1| Os08g0151400 [Oryza sativa Japonica Group]
gi|113622967|dbj|BAF22912.1| Os08g0151400, partial [Oryza sativa Japonica Group]
Length = 64
Score = 40.8 bits (94), Expect = 0.29, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
+RI I + + D I G + GFD+++N++L+D E + R+ L +ILL G+NIT+
Sbjct: 1 ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRK--SLGRILLKGDNITL 58
Query: 186 L 186
+
Sbjct: 59 M 59
>gi|109514130|ref|XP_001065908.1| PREDICTED: small nuclear ribonucleoprotein E [Rattus norvegicus]
Length = 92
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 56
>gi|156040265|ref|XP_001587119.1| hypothetical protein SS1G_12149 [Sclerotinia sclerotiorum 1980]
gi|154696205|gb|EDN95943.1| hypothetical protein SS1G_12149 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 84
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E EG K+ +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVE---EKEGGEKVKIGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|259146036|emb|CAY79296.1| Lsm4p [Saccharomyces cerevisiae EC1118]
Length = 187
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNVES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ K ++I + G I + L
Sbjct: 61 SKAVKSNEIYIRGTFIKFIKLQ 82
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+ + + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDPIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+ + + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDPIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEES 55
>gi|380800507|gb|AFE72129.1| small nuclear ribonucleoprotein E, partial [Macaca mulatta]
Length = 59
Score = 40.8 bits (94), Expect = 0.31, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 10 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 54
>gi|332222659|ref|XP_003260491.1| PREDICTED: small nuclear ribonucleoprotein E-like [Nomascus
leucogenys]
Length = 92
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SR I + + + +I G + GFD+++N++L++ E S + R+ +L
Sbjct: 17 PINLIFRYLQSRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDEAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Otolemur
garnettii]
Length = 102
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ L+ +D +NM+ DV E +T E
Sbjct: 17 PLDLIRLSLNKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIE 65
Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ L+ +D +NM+ DV +
Sbjct: 17 PLDLIRLSLNKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEET 60
>gi|302881905|ref|XP_003039863.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
gi|256720730|gb|EEU34150.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
Length = 125
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L +V +++PEG + +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLREVV--QTSPEGDKFVRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|338724569|ref|XP_003364968.1| PREDICTED: small nuclear ribonucleoprotein E-like, partial [Equus
caballus]
Length = 71
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 8 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 65
Query: 186 L 186
L
Sbjct: 66 L 66
>gi|297469885|ref|XP_002707307.1| PREDICTED: small nuclear ribonucleoprotein E [Bos taurus]
gi|297492936|ref|XP_002699974.1| PREDICTED: small nuclear ribonucleoprotein E [Bos taurus]
gi|296470897|tpg|DAA13012.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 164
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +R HI + + + I G + GFD++ N++L+D E S + R+ +L
Sbjct: 89 PINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKTKSRK--QL 146
Query: 174 DQILLNGNNITML 186
+I+L G+NIT++
Sbjct: 147 GRIMLKGDNITLI 159
>gi|255563612|ref|XP_002522808.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223538046|gb|EEF39659.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 88
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHI----IMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S+ I + D I G + GFD+++N++L+D E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQFWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|358332137|dbj|GAA50846.1| U6 snRNA-associated Sm-like protein LSm8 [Clonorchis sinensis]
Length = 85
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP-EGRRITKLDQILLNGNNITMLG 187
+++I + + IVGTL GFD+ +N++++D E +P EG L ++ G N+ ++G
Sbjct: 2 VNVITADGRTIVGTLKGFDNVINLVIKDSQERVFSPTEGVEQVPLGLFIIRGQNVALVG 60
>gi|147903209|ref|NP_001090934.1| small nuclear ribonucleoprotein E [Sus scrofa]
gi|166233313|sp|A1XQR9.1|RUXE_PIG RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|117660533|gb|ABK55625.1| SNRPE [Sus scrofa]
gi|117660560|gb|ABK55626.1| NDUFB2 [Sus scrofa]
Length = 92
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTE 160
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEE 63
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 64 IHSKTKSRK--QLGRIMLKGDNITLL 87
>gi|300123521|emb|CBK24793.2| unnamed protein product [Blastocystis hominis]
Length = 108
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 120 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY-ESTPEGRRITKLDQILL 178
E + K + ++ I+ + + G L G D N++LEDV E S E R+ K D L
Sbjct: 3 EELGKMMNKKVVILTNDGRTFTGMLRGVDQVTNLILEDVEERIFSQTEPMRVEKYDVYLF 62
Query: 179 NGNNITMLGLHTH 191
G++ +++GL++
Sbjct: 63 RGDDTSLIGLYSE 75
>gi|110671432|gb|ABG81967.1| putative U6 snRNA-associated Sm-like protein LSm3 [Diaphorina
citri]
Length = 101
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + R+H+ M+N++ + G L+ +D +NM+L DV E +T E
Sbjct: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEETVTTVE 62
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + R+H+ M+N++ + G L+ +D +NM+L DV +
Sbjct: 14 PLDLIRLSLDERVHVKMRNERVLRGKLHAYDQHLNMVLGDVEET 57
>gi|393215720|gb|EJD01211.1| like-Sm ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 77
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + ++ + ++ +++ GTL GFD F+N++L+D E E+TP + + + +++ GN
Sbjct: 9 LKKFMDKKLFVHLQGGRKVSGTLRGFDIFLNLVLDDAIE-ETTPAQK--SPIGNVVIRGN 65
Query: 182 NITML 186
++T++
Sbjct: 66 SVTLM 70
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L + E +T E T +
Sbjct: 9 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYR 68
Query: 178 LNGNNITML 186
NI+ML
Sbjct: 69 TTKRNISML 77
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L + +
Sbjct: 9 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEET 52
>gi|281354337|gb|EFB29921.1| hypothetical protein PANDA_016960 [Ailuropoda melanoleuca]
Length = 92
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>gi|383621641|ref|ZP_09948047.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|448702271|ref|ZP_21699925.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|445777641|gb|EMA28602.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
Length = 76
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L G+D +N++LE+VT
Sbjct: 5 PLDVLEASLGERVAVRLKSGDEYVGELAGYDQHMNLVLEEVT 46
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
PL++++ +G R+ + +K+ E VG L G+D +N++LE+VT
Sbjct: 5 PLDVLEASLGERVAVRLKSGDEYVGELAGYDQHMNLVLEEVT 46
>gi|378732523|gb|EHY58982.1| small nuclear ribonucleoprotein G [Exophiala dermatitidis
NIH/UT8656]
Length = 80
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + +++++G L G+D F+N++L+D E ++ E R L + + GN++
Sbjct: 10 KYMEKRLFVQLNGNRKVIGVLRGYDVFLNIVLDDAVEEKAGGERER---LGMVAIRGNSV 66
Query: 184 TMLGLHTHCG 193
ML G
Sbjct: 67 VMLEALERVG 76
>gi|295667135|ref|XP_002794117.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286223|gb|EEH41789.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 155
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 103 TMTAPSVATNPSTLL-PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLED 157
MT TLL P+ + K + R I + + I G + GFD+F+N++++D
Sbjct: 61 AMTGRGGGGGRKTLLAPIHFIFKLLQQRSVVSIWLYEQLAIRIEGKIRGFDEFMNLVVDD 120
Query: 158 VTEYE--STPEGRRITKLDQILLNGNNITML 186
E + E + +L QILL G+N++++
Sbjct: 121 AVEVRLATKTEEEKKRQLGQILLKGDNVSLI 151
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 60
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L +V E +T E
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTIE 64
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L +V +
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEET 59
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ + D+E+ G L +D +NM+L DV E
Sbjct: 7 PLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEE 49
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ + D+E+ G L +D +NM+L DV +
Sbjct: 7 PLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEE 49
>gi|255581898|ref|XP_002531748.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223528618|gb|EEF30637.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 86
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKT--L 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|443898710|dbj|GAC76044.1| UDP-glucose pyrophosphorylase [Pseudozyma antarctica T-34]
Length = 148
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M A + +N + LVD C+ ++ +++++ K+++G L +D F N++L+D E
Sbjct: 1 MDAQDIVSNIAFTTSGSLVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVF 59
Query: 164 TPEGRRITKLDQ--ILLNGNNITMLG 187
G R + + L+ G N+ ++G
Sbjct: 60 V--GNRYGDIARGVFLVRGENVVLMG 83
Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M A + +N + LVD C+ ++ +++++ K+++G L +D F N++L+D +
Sbjct: 1 MDAQDIVSNIAFTTSGSLVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVE 56
>gi|453085619|gb|EMF13662.1| LSM-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 99
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 11/56 (19%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEY---------ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E E + EGRR +L QILL G+N+ ++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAVEVQQSAKGETNEDSKEGRR--ELGQILLKGDNVCLI 95
>gi|402079438|gb|EJT74703.1| sm snRNP core protein Sme1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 94
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYEST----PEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++L+D E + PE +R L QILL G+N++++
Sbjct: 42 IEGKIRGFDEFMNLVLDDAVEIKQVTKENPEEKR-RPLGQILLKGDNVSLI 91
>gi|4507129|ref|NP_003085.1| small nuclear ribonucleoprotein E [Homo sapiens]
gi|27883844|ref|NP_033253.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|45382605|ref|NP_990581.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|134085710|ref|NP_001076928.1| small nuclear ribonucleoprotein E [Bos taurus]
gi|388490108|ref|NP_001253704.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|403420626|ref|NP_001258166.1| small nuclear ribonucleoprotein polypeptide E [Rattus norvegicus]
gi|114572016|ref|XP_001158544.1| PREDICTED: small nuclear ribonucleoprotein E isoform 3 [Pan
troglodytes]
gi|126306697|ref|XP_001364976.1| PREDICTED: small nuclear ribonucleoprotein E-like [Monodelphis
domestica]
gi|291402573|ref|XP_002717622.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E
[Oryctolagus cuniculus]
gi|297662243|ref|XP_002809621.1| PREDICTED: small nuclear ribonucleoprotein E [Pongo abelii]
gi|327271183|ref|XP_003220367.1| PREDICTED: small nuclear ribonucleoprotein E-like [Anolis
carolinensis]
gi|344277002|ref|XP_003410294.1| PREDICTED: small nuclear ribonucleoprotein E-like [Loxodonta
africana]
gi|348578175|ref|XP_003474859.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia porcellus]
gi|354487267|ref|XP_003505795.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|359324001|ref|XP_003640259.1| PREDICTED: small nuclear ribonucleoprotein E-like [Canis lupus
familiaris]
gi|397479845|ref|XP_003811214.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pan paniscus]
gi|397504925|ref|XP_003823029.1| PREDICTED: small nuclear ribonucleoprotein E [Pan paniscus]
gi|402857535|ref|XP_003893308.1| PREDICTED: small nuclear ribonucleoprotein E [Papio anubis]
gi|402858753|ref|XP_003893852.1| PREDICTED: small nuclear ribonucleoprotein E-like [Papio anubis]
gi|403261763|ref|XP_003923280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Saimiri
boliviensis boliviensis]
gi|403294819|ref|XP_003938362.1| PREDICTED: small nuclear ribonucleoprotein E [Saimiri boliviensis
boliviensis]
gi|410986283|ref|XP_003999440.1| PREDICTED: small nuclear ribonucleoprotein E [Felis catus]
gi|426239377|ref|XP_004013598.1| PREDICTED: small nuclear ribonucleoprotein E [Ovis aries]
gi|426333365|ref|XP_004028248.1| PREDICTED: small nuclear ribonucleoprotein E-like [Gorilla gorilla
gorilla]
gi|55977309|sp|P62305.1|RUXE_MOUSE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|61237380|sp|P62304.1|RUXE_HUMAN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|78102504|sp|P62303.1|RUXE_CHICK RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|190360254|sp|A4FUI2.1|RUXE_BOVIN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|225734045|pdb|3CW1|E Chain E, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734054|pdb|3CW1|W Chain W, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734063|pdb|3CW1|X Chain X, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734072|pdb|3CW1|Y Chain Y, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583605|pdb|3PGW|E Chain E, Crystal Structure Of Human U1 Snrnp
gi|315583614|pdb|3PGW|H Chain H, Crystal Structure Of Human U1 Snrnp
gi|332639437|pdb|2Y9A|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639444|pdb|2Y9A|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639451|pdb|2Y9A|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639461|pdb|2Y9B|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639468|pdb|2Y9B|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639475|pdb|2Y9B|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639485|pdb|2Y9C|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639492|pdb|2Y9C|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639499|pdb|2Y9C|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639509|pdb|2Y9D|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639516|pdb|2Y9D|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639523|pdb|2Y9D|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781212|pdb|3S6N|E Chain E, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302200|pdb|4F7U|E Chain E, Macromolecular Machine 6
gi|444302201|pdb|4F7U|H Chain H, Macromolecular Machine 6
gi|453055424|pdb|1VU2|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055432|pdb|1VU2|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055440|pdb|1VU2|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055448|pdb|1VU2|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055456|pdb|1VU2|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055464|pdb|1VU2|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453055476|pdb|1VU2|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|453055480|pdb|1VU3|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055488|pdb|1VU3|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055496|pdb|1VU3|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055504|pdb|1VU3|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055512|pdb|1VU3|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055520|pdb|1VU3|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056012|pdb|4F77|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453056020|pdb|4F77|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453056028|pdb|4F77|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453056036|pdb|4F77|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453056044|pdb|4F77|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453056052|pdb|4F77|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056064|pdb|4F77|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|35105|emb|CAA31007.1| unnamed protein product [Homo sapiens]
gi|304425|gb|AAA49073.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|312002|emb|CAA46624.1| SmE protein [Gallus gallus]
gi|338267|gb|AAA90926.1| small nuclear RNA protein (snRNP E) [Homo sapiens]
gi|12803609|gb|AAH02639.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|12859681|dbj|BAB31734.1| unnamed protein product [Mus musculus]
gi|14198403|gb|AAH08262.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|33585911|gb|AAH55765.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|56078667|gb|AAH51207.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|60688403|gb|AAH90951.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|119611900|gb|EAW91494.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_a [Homo
sapiens]
gi|133777545|gb|AAI14916.1| SNRPE protein [Bos taurus]
gi|149058608|gb|EDM09765.1| rCG46024, isoform CRA_a [Rattus norvegicus]
gi|189053260|dbj|BAG35066.1| unnamed protein product [Homo sapiens]
gi|208967438|dbj|BAG73733.1| small nuclear ribonucleoprotein polypeptide E [synthetic construct]
gi|296479386|tpg|DAA21501.1| TPA: small nuclear ribonucleoprotein E [Bos taurus]
gi|344246138|gb|EGW02242.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
gi|355558873|gb|EHH15653.1| hypothetical protein EGK_01772 [Macaca mulatta]
gi|355746009|gb|EHH50634.1| hypothetical protein EGM_01497 [Macaca fascicularis]
gi|387542988|gb|AFJ72121.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|410355685|gb|JAA44446.1| small nuclear ribonucleoprotein polypeptide E [Pan troglodytes]
gi|417395589|gb|JAA44847.1| Putative small nuclear ribonucleoprotein e [Desmodus rotundus]
Length = 92
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Megachile
rotundata]
Length = 103
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L + E +T E T +
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYR 75
Query: 178 LNGNNITML 186
NI+ML
Sbjct: 76 TTKRNISML 84
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 52
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVL 53
>gi|320100411|ref|YP_004176003.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus mucosus
DSM 2162]
gi|319752763|gb|ADV64521.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 93
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P++++ G I + +K E +GTL+ D +N++L D TEY S EG+ ++ +I+
Sbjct: 13 PMKVLKSAEGQIILVRIKGGYEYIGTLDLIDGTMNIVLSDCTEYSS--EGKPTSRYGRII 70
Query: 178 LNGNNITML 186
+ G+++ +
Sbjct: 71 IRGSHVEFI 79
>gi|282848216|gb|ADB02889.1| small nuclear ribonucleoprotein polypeptide [Jatropha curcas]
Length = 88
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKTRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|119611901|gb|EAW91495.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_b [Homo
sapiens]
Length = 84
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 21 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 78
Query: 186 L 186
L
Sbjct: 79 L 79
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L + E +T E T +
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYR 75
Query: 178 LNGNNITML 186
NI+ML
Sbjct: 76 TTKRNISML 84
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 52
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVL 53
>gi|429327489|gb|AFZ79249.1| small nuclear ribonucleoprotein-associated protein B, putative
[Babesia equi]
Length = 153
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST--PEGRRITK-LDQILLNGNNI 183
+ + +K+ ++ VGTL FD +N++L D E+ T EG+ I + L ILL G NI
Sbjct: 16 VRVTVKDGRKFVGTLIAFDKHMNLVLADCEEFRMTKGKEGKEIKRTLGFILLRGENI 72
>gi|343429796|emb|CBQ73368.1| related to LSM1-Sm-like (Lsm) protein [Sporisorium reilianum SRZ2]
Length = 148
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M A + +N + LVD C+ ++ +++++ K+++G L +D F N++L+D E
Sbjct: 1 MDAQDIVSNIAFTTSGSLVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVF 59
Query: 164 TPEGRRITKLDQ--ILLNGNNITMLG 187
G R + + L+ G N+ ++G
Sbjct: 60 V--GNRYGDIARGVFLVRGENVVLMG 83
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M A + +N + LVD C+ ++ +++++ K+++G L +D F N++L+D +
Sbjct: 1 MDAQDIVSNIAFTTSGSLVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVE 56
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVE 60
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEV 55
>gi|346325131|gb|EGX94728.1| U6 snRNA-associated Sm-like protein LSM4, putative [Cordyceps
militaris CM01]
Length = 163
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
M P T + SH L LL + + A S LPL L++ G + + +KN +
Sbjct: 1 MAGPRTRSLRASHCAVLLARLLASAFFLANAL-VSLQLPLGLLNAAQGHPMLVELKNGET 59
Query: 140 IVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+ G L D ++N+ L V + ++PEG + +L ++ + GNNI L
Sbjct: 60 LNGHLVNCDTWMNLTLTQVVQ--TSPEGDKFMRLKEVYVKGNNIKYL 104
>gi|402079351|gb|EJT74616.1| glycine rich protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 141
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ +++V +++PEG + +L +
Sbjct: 1 MLPLGLLNAAQGHAMMVELKNGETLNGHLVMCDTWMNLTMKEVV--QTSPEGDKFMRLPE 58
Query: 176 ILLNGNNITML 186
I + GNNI L
Sbjct: 59 IYVKGNNIKYL 69
>gi|313586495|gb|ADR71258.1| small nuclear ribonucleoprotein E [Hevea brasiliensis]
Length = 88
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLDDAEEVNIKKKTRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|449019835|dbj|BAM83237.1| U6 snRNA-associated Sm-like protein LSm3 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-----------YESTPE 166
P+EL+ + R+ + +K D+E+VGTL+ +D +N+++ D E YE
Sbjct: 13 PVELLRIALDERVFVKLKGDRELVGTLHAYDQHLNLIISDAEETLQKAELDEETYEQIVR 72
Query: 167 GRRITKLDQILLNGNNITMLG-LHTHCG 193
R KL + + G+ + ++ L H G
Sbjct: 73 QER-RKLQLVYVRGDTVFLVSPLLRHTG 99
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
P+EL+ + R+ + +K D+E+VGTL+ +D +N+++ D +
Sbjct: 13 PVELLRIALDERVFVKLKGDRELVGTLHAYDQHLNLIISDAEET 56
>gi|367045678|ref|XP_003653219.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL 8126]
gi|347000481|gb|AEO66883.1| hypothetical protein THITE_2115403 [Thielavia terrestris NRRL 8126]
Length = 127
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L +V + ++PEG R +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQ--TSPEGDRFMRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|125560150|gb|EAZ05598.1| hypothetical protein OsI_27814 [Oryza sativa Indica Group]
gi|125560167|gb|EAZ05615.1| hypothetical protein OsI_27832 [Oryza sativa Indica Group]
gi|222639919|gb|EEE68051.1| hypothetical protein OsJ_26051 [Oryza sativa Japonica Group]
Length = 79
Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 126 IGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
I +RI I + + D I G + GFD+++N++L+D E + R+ L +ILL G+NI
Sbjct: 14 IKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRK--SLGRILLKGDNI 71
Query: 184 TML 186
T++
Sbjct: 72 TLM 74
>gi|348569444|ref|XP_003470508.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia porcellus]
Length = 92
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTE 160
T V P L+ L + SRI + + + + I G + GFD+++N++L+D E
Sbjct: 7 TQKVQKVMVQPINLIFRYLQN---SSRIQVWLYEQVNMHIEGCIIGFDEYMNLVLDDAEE 63
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
S + R+ +L I+L G+NIT+L
Sbjct: 64 IHSKTKSRK--QLGWIMLKGDNITLL 87
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + R+++ ++ D+EI G L+ +D +NM+L DV E +T E
Sbjct: 11 PLDLIRLSLDERVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVE 59
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + R+++ ++ D+EI G L+ +D +NM+L DV +
Sbjct: 11 PLDLIRLSLDERVYVKLRGDREIRGKLHAYDQHLNMILGDVEET 54
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
T PL+LV + RI++ M+ D+E+ G L+ +D +NM+L +V E
Sbjct: 17 QTTEPLDLVRLSLDERIYVKMRGDRELRGKLHAYDQHMNMVLGEVEE 63
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
T PL+LV + RI++ M+ D+E+ G L+ +D +NM+L +V +
Sbjct: 17 QTTEPLDLVRLSLDERIYVKMRGDRELRGKLHAYDQHMNMVLGEVEES 64
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 113 PSTLL-PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
P+T+L PL+L+ + +++I +K D+E+ GTL+ +D +NM+L +V E
Sbjct: 3 PTTVLEPLDLIRLSLDEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEE 51
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 10 PSTLL-PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
P+T+L PL+L+ + +++I +K D+E+ GTL+ +D +NM+L +V +
Sbjct: 3 PTTVLEPLDLIRLSLDEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEET 52
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 107 PSVATNPSTLL----PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
P T P +L+ P++L+ + RI++ M++D+E+ G L+ FD +NM+L + E
Sbjct: 6 PEGETEPVSLVTIKEPVDLIRLSVDERIYVKMRHDRELRGRLHAFDQHLNMVLGEAEE 63
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 4 PSVATNPSTLL----PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 52
P T P +L+ P++L+ + RI++ M++D+E+ G L+ FD +NM+L
Sbjct: 6 PEGETEPVSLVTIKEPVDLIRLSVDERIYVKMRHDRELRGRLHAFDQHLNMVL 58
>gi|448399368|ref|ZP_21570665.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
gi|445668989|gb|ELZ21605.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
Length = 75
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEHVGELAGYDQHMNLVLEDVT 46
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
PL++++ +G R+ + +K+ E VG L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEHVGELAGYDQHMNLVLEDVT 46
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L D E +T E
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVE 64
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L D +
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDAEET 59
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ + D+E+ G L +D +NM+L DV E
Sbjct: 7 PLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEE 49
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ + D+E+ G L +D +NM+L DV +
Sbjct: 7 PLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEE 49
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 55
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 171 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 219
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 171 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEE 213
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG-RRITKLDQI 176
PL+++ I +I+I M+N+ E+ GTL +D+ +NM++ E S EG + KLD +
Sbjct: 7 PLDVLKFSIAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEE-TSFQEGIKTKRKLDAL 65
Query: 177 LLNGNNITML 186
L G+ I ++
Sbjct: 66 YLRGDGIILI 75
>gi|295665420|ref|XP_002793261.1| small nuclear ribonucleoprotein SmG [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278175|gb|EEH33741.1| small nuclear ribonucleoprotein SmG [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 78
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + +++++G L G+D F+N++L++ E +S E +L +++ GN++
Sbjct: 10 KYMEKRLFVQINGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEK---VRLGMVVIRGNSV 66
Query: 184 TMLGLHTHCGMR 195
ML G R
Sbjct: 67 VMLEALERVGDR 78
>gi|336455074|ref|NP_001229595.1| small nuclear ribonucleoprotein polypeptide E-like
[Strongylocentrotus purpuratus]
Length = 99
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SR+ I + +++ I G + GFD+++N++L+D EY + R+ L +ILL G+NIT+
Sbjct: 27 SRVQIWLYDQSNLRIEGHIIGFDEYMNVVLDDAEEYHKKNKTRK--PLGRILLKGDNITL 84
Query: 186 L 186
+
Sbjct: 85 I 85
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ I R+++ + D+E+ G L+G+D +NM+L DV E ++ E
Sbjct: 4 PLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTSTE 52
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ I R+++ + D+E+ G L+G+D +NM+L DV +
Sbjct: 4 PLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEE 46
>gi|339522121|gb|AEJ84225.1| small nuclear ribonucleoprotein E [Capra hircus]
Length = 79
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 16 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 73
Query: 186 L 186
L
Sbjct: 74 L 74
>gi|310795553|gb|EFQ31014.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 128
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L++V + ++PEG + K+ +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVVQ--TSPEGDKFVKIPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|219119422|ref|XP_002180472.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407945|gb|EEC47880.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 87
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
R+ + + +++++GTL G+D F+N++LEDV E L Q+++ GN+I L
Sbjct: 30 KRLRLSLNANRKVIGTLRGYDAFLNVVLEDV-------ESETGQYLGQVVIRGNSIVQL 81
>gi|312005|emb|CAA46626.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|338269|gb|AAA36621.1| small nuclear ribonucleoprotein E, partial [Homo sapiens]
Length = 81
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 18 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 75
Query: 186 L 186
L
Sbjct: 76 L 76
>gi|242799446|ref|XP_002483380.1| small nuclear ribonucleoprotein SmG, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716725|gb|EED16146.1| small nuclear ribonucleoprotein SmG, putative [Talaromyces
stipitatus ATCC 10500]
Length = 77
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + +++++G L G+D F+N++L+D E P+G + +L +++ GN++
Sbjct: 10 KYMEKRLFVQLNGNRKVIGILRGYDVFMNIVLDDAV--EEKPDGGK-DRLGMVVIRGNSV 66
Query: 184 TMLGLHTHCG 193
ML G
Sbjct: 67 VMLEALERIG 76
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 112 NPSTLL--PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
+P+ LL PL++V + R+ I + D+E+VG L+ +D +NM+L DV E +T
Sbjct: 2 DPTLLLQEPLDIVRVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATT 56
Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 9 NPSTLL--PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+P+ LL PL++V + R+ I + D+E+VG L+ +D +NM+L DV +
Sbjct: 2 DPTLLLQEPLDIVRVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEV 53
>gi|336270688|ref|XP_003350103.1| hypothetical protein SMAC_00994 [Sordaria macrospora k-hell]
gi|380095497|emb|CCC06970.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 96
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE---STPEGRRITKLDQILLNGNNITML 186
I+GT+ GFD+F+N+++++ E + T E +L QILL G+N++++
Sbjct: 42 IIGTIRGFDEFMNLVIDNAIEVKLVSKTNEKEERRELGQILLKGDNVSLI 91
>gi|255712429|ref|XP_002552497.1| KLTH0C06248p [Lachancea thermotolerans]
gi|238933876|emb|CAR22059.1| KLTH0C06248p [Lachancea thermotolerans CBS 6340]
Length = 175
Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G ++ I +KN + IVG L D+++N+ L DVT ++ KL +
Sbjct: 1 MLPLYLLTNAKGQQLVIELKNGETIVGQLTNVDNWMNLTLTDVTHTSASD----TVKLSE 56
Query: 176 ILLNGNNITMLGLH 189
I + GN I + L
Sbjct: 57 IYVRGNFIKYIKLQ 70
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV--TDCHDSHLLS--YFA 68
+LPL L+ G ++ I +KN + IVG L D+++N+ L DV T D+ LS Y
Sbjct: 1 MLPLYLLTNAKGQQLVIELKNGETIVGQLTNVDNWMNLTLTDVTHTSASDTVKLSEIYVR 60
Query: 69 SDLINFI 75
+ I +I
Sbjct: 61 GNFIKYI 67
>gi|171694560|ref|XP_001912204.1| hypothetical protein [Podospora anserina S mat+]
gi|170947522|emb|CAP59683.1| unnamed protein product [Podospora anserina S mat+]
Length = 85
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++++D E +G KL +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVMDDAVE---EKDGGEKVKLGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|378734306|gb|EHY60765.1| hypothetical protein HMPREF1120_08709 [Exophiala dermatitidis
NIH/UT8656]
Length = 135
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D ++N+ L++V +++PEG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVV--QTSPEGDRFWRLPE 58
Query: 176 ILLNGNNITML 186
+ GNNI L
Sbjct: 59 AYVRGNNIKYL 69
>gi|367022520|ref|XP_003660545.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila ATCC
42464]
gi|347007812|gb|AEO55300.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila ATCC
42464]
Length = 128
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L +V +++PEG + +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLREVV--QTSPEGDKFMRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ + + + + +K +E GTL G+D +N++L+ E E EG I K+ ++
Sbjct: 5 PLDILNNALNTAVIVRLKGAREFRGTLQGYDVHMNLVLD---EAEEIKEGEIIRKIGSVV 61
Query: 178 LNGNNIT 184
+ G+N+
Sbjct: 62 VRGDNVV 68
>gi|157128750|ref|XP_001661504.1| SM protein G, putative [Aedes aegypti]
gi|108872482|gb|EAT36707.1| AAEL011233-PA [Aedes aegypti]
Length = 91
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIG--SRIHIIMKNDK--EIVGTLNGFDDFVNMLLEDVT 159
M+ + P+ L+ + + SR+ + + + I G + GFD+++N++L++
Sbjct: 1 MSFKGSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAE 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
EY + + RR L +I+L G+NIT++
Sbjct: 61 EYNTKKQNRR--PLGRIMLKGDNITLI 85
>gi|390477421|ref|XP_002760651.2| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 79
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 16 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 73
Query: 186 L 186
L
Sbjct: 74 L 74
>gi|296230202|ref|XP_002760604.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 92
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 42 RIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>gi|148707697|gb|EDL39644.1| small nuclear ribonucleoprotein E, isoform CRA_b [Mus musculus]
Length = 86
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 23 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 80
Query: 186 L 186
L
Sbjct: 81 L 81
>gi|448118085|ref|XP_004203416.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|448120526|ref|XP_004203999.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384284|emb|CCE78988.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384867|emb|CCE78402.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
M+ S L P+ L+ K + + I + + I G + GFD+F+N++++D
Sbjct: 1 MSTVSKTNKKPMLPPINLIFKYLQQQSLVTIWLFEQTQSRIQGKIRGFDEFMNIVIDDAK 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
E ST +G L +ILL G+NIT++
Sbjct: 61 EI-STEDGSS-EALGRILLKGDNITLI 85
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + +I++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 15 PLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 63
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + +I++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 15 PLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEET 58
>gi|326933691|ref|XP_003212934.1| PREDICTED: small nuclear ribonucleoprotein E-like [Meleagris
gallopavo]
Length = 85
Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 22 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITL 79
Query: 186 L 186
L
Sbjct: 80 L 80
>gi|310798264|gb|EFQ33157.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 96
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E ++ PE +R L QILL G+N++++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAVEVKQVTKTNPEEKR-RALGQILLKGDNVSLI 91
>gi|225679289|gb|EEH17573.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 78
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + +++++G L G+D F+N++L++ E +S E +L +++ GN++
Sbjct: 10 KYMEKRLFVQINGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEK---VRLGMVVIRGNSV 66
Query: 184 TMLGLHTHCGMR 195
ML G R
Sbjct: 67 VMLEALERIGDR 78
>gi|340517649|gb|EGR47892.1| predicted protein [Trichoderma reesei QM6a]
Length = 152
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L++V +++PEG + +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVV--QTSPEGDKFMRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|149408455|ref|XP_001513314.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ornithorhynchus
anatinus]
Length = 92
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +++L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRVMLKGDNITLL 87
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + +I++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 15 PLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 63
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + +I++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 15 PLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEET 58
>gi|355571227|ref|ZP_09042479.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825615|gb|EHF09837.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 78
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+LP++ V + SRI + +K+D +++ G L D+++N+ ++D TEY + GR L
Sbjct: 6 VLPIKKVFSLVDSRIIVEIKDDQRKLQGRLVAVDEYLNIHMDDTTEYVNNVRGR---TLG 62
Query: 175 QILLNGNNI 183
+++ GNNI
Sbjct: 63 TVVIRGNNI 71
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV E
Sbjct: 16 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 58
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L DV +
Sbjct: 16 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEI 59
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 127 GSRIHIIMKNDK--EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNIT 184
G+R+ I + + +I G + GFD+++NM+LEDV E + RR L ILL G+ +
Sbjct: 26 GTRVQIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYVKKQERR--ALGTILLKGDAMA 83
Query: 185 ML 186
++
Sbjct: 84 LI 85
>gi|363753610|ref|XP_003647021.1| hypothetical protein Ecym_5455 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890657|gb|AET40204.1| hypothetical protein Ecym_5455 [Eremothecium cymbalariae
DBVPG#7215]
Length = 93
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 40/114 (35%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
M+ PI C YS Q T+ LY ++
Sbjct: 9 MMPPINCIYSHLQQQSTVKFWLYQ-------------------------------QSQMR 37
Query: 140 IVGTLNGFDDFVNMLLEDVTEY---EST----PEGRRITKLDQILLNGNNITML 186
I G ++GFD+F+N++++D E E T P+ + KL +ILL G+NIT++
Sbjct: 38 IKGKISGFDEFMNVVIDDALELPIDEKTGAELPD--KAVKLGRILLKGDNITLI 89
>gi|296473647|tpg|DAA15762.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIG--SRIHIIMKNDKEIV--GTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ +C+ SRI + + + G GFD+++N++L+D + S + R+ +L
Sbjct: 17 PINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|156846025|ref|XP_001645901.1| hypothetical protein Kpol_1045p29 [Vanderwaltozyma polyspora DSM
70294]
gi|156116571|gb|EDO18043.1| hypothetical protein Kpol_1045p29 [Vanderwaltozyma polyspora DSM
70294]
Length = 193
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES--------TPEG 167
+LPL L+ G +I I +KN + I G L D+++N+ L DV +Y+S PEG
Sbjct: 1 MLPLYLLTNAKGQKITIELKNGETIKGVLTNVDNWMNLTLSDVIQYDSDALNNGAEKPEG 60
>gi|449299266|gb|EMC95280.1| hypothetical protein BAUCODRAFT_577920 [Baudoinia compniacensis
UAMH 10762]
Length = 83
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++GTL G+D F+N++L++ T ES P ++ +L ++ GN++
Sbjct: 10 KYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEAT--ESKPNNEKV-RLGMCVIRGNSV 66
Query: 184 TML 186
M+
Sbjct: 67 VMM 69
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY-----ESTPEGRRITK 172
PL+L+ + + + ++ +E+ G L G+D NM+L D TEY + P+G+
Sbjct: 13 PLDLIRYQLDETVLVKLRGAREMKGKLQGYDSHCNMVLSDATEYIYAENQDKPQGKST-- 70
Query: 173 LDQILLNGNNITML 186
D + + G+++ ++
Sbjct: 71 -DMVFIRGDSVILI 83
>gi|425766459|gb|EKV05069.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum PHI26]
gi|425781600|gb|EKV19555.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum Pd1]
Length = 87
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE---STPEGRRITKLDQILLNGNNITML 186
I GT+ GFD+F+N+++E+ E T E +R L QILL G+N++++
Sbjct: 36 IEGTIRGFDEFMNLVIENAVEVRLATKTEEEKR-RPLGQILLKGDNVSLI 84
>gi|409043237|gb|EKM52720.1| hypothetical protein PHACADRAFT_261323 [Phanerochaete carnosa
HHB-10118-sp]
Length = 94
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + RI + +E+ G L GFD +N++L+DV E T +L ++L G +
Sbjct: 14 KYVNERIRVKFTGGREVTGVLKGFDQLLNLVLDDVEEQLHTEPLPSTRQLGLVVLRGPTL 73
Query: 184 TML 186
T+L
Sbjct: 74 TLL 76
>gi|156045543|ref|XP_001589327.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980]
gi|154694355|gb|EDN94093.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 94
Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 6/52 (11%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYEST----PEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++L+D E + E RR L QILL G+N++++
Sbjct: 40 RIEGKIRGFDEFMNLVLDDAVEVKQATKDKAESRR--ALGQILLKGDNVSLI 89
>gi|452979544|gb|EME79306.1| hypothetical protein MYCFIDRAFT_71922 [Pseudocercospora fijiensis
CIRAD86]
Length = 84
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++GTL G+D F+N++L++ T ES P ++ +L ++ GN++
Sbjct: 10 KYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEAT--ESKPNNEKV-RLGMCVIRGNSV 66
Query: 184 TML 186
M+
Sbjct: 67 VMM 69
>gi|449457117|ref|XP_004146295.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 2
[Cucumis sativus]
Length = 86
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E + ++ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK--AL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|390458031|ref|XP_003732042.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 89
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 39 RIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 84
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV E E T ++I+
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETD-EEII 70
Query: 178 LN-GNNITML 186
N NI ML
Sbjct: 71 RNIKRNIKML 80
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEET 55
>gi|332845410|ref|XP_003315041.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 115 TLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
T+LP+ L+ + + +R + + + + I G + GFD ++N++L+D E S + R+
Sbjct: 14 TVLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKTKSRK- 72
Query: 171 TKLDQILLNGNNITML 186
+L +I+L G+NI +L
Sbjct: 73 -QLGRIILKGDNIPLL 87
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV E E T ++I+
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETD-EEII 70
Query: 178 LN-GNNITML 186
N NI ML
Sbjct: 71 RNIKRNIKML 80
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEET 55
>gi|449457115|ref|XP_004146294.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 1
[Cucumis sativus]
Length = 88
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E + ++ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--L 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV E
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEE 54
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEET 55
>gi|116182940|ref|XP_001221319.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88186395|gb|EAQ93863.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 83
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E + E KL +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVLGVLRGYDVFLNIVLDDAVEEKDNGE---KVKLGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 61
>gi|351707608|gb|EHB10527.1| Small nuclear ribonucleoprotein E [Heterocephalus glaber]
Length = 92
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 42 RIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>gi|332248094|ref|XP_003273196.1| PREDICTED: small nuclear ribonucleoprotein E [Nomascus leucogenys]
Length = 52
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 3 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 47
>gi|170579069|ref|XP_001894662.1| small nuclear ribonucleoprotein E [Brugia malayi]
gi|158598633|gb|EDP36493.1| small nuclear ribonucleoprotein E, putative [Brugia malayi]
gi|402592161|gb|EJW86090.1| small nuclear ribonucleoprotein E [Wuchereria bancrofti]
Length = 89
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIG--SRIHIIMKND--KEIVGTLNGFDDFVNMLLEDVT 159
M A S + P+ L+ + + SRI I + D I G + GFD+++N++L++
Sbjct: 1 MAARSGKVQKVMVQPINLIFRYLQNRSRIQIWLYEDITHRIEGYIIGFDEYMNVVLDEAE 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
E + R K+ +I+L G+NIT++
Sbjct: 61 EVNMKTKNR--NKVGRIMLKGDNITLI 85
>gi|357455361|ref|XP_003597961.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|357491039|ref|XP_003615807.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355487009|gb|AES68212.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355517142|gb|AES98765.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|388498322|gb|AFK37227.1| unknown [Medicago truncatula]
Length = 88
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
V T P L+ L K +RI I + + D I G + GFD+++N++L+D E
Sbjct: 6 VQRVMTQPINLIFRFLQSK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNV 62
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+ ++ L +ILL G+NIT++
Sbjct: 63 KKKSKKT--LGRILLKGDNITLM 83
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans morsitans]
Length = 102
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 17 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 65
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 17 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 60
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P +L+++ I ++ I +KN+ I G + FD +N++L++ E ++ E + KL IL
Sbjct: 6 PFDLLNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEELDANGELK--AKLGTIL 63
Query: 178 LNGNNI 183
L G NI
Sbjct: 64 LRGGNI 69
>gi|302765919|ref|XP_002966380.1| hypothetical protein SELMODRAFT_230895 [Selaginella moellendorffii]
gi|302792841|ref|XP_002978186.1| hypothetical protein SELMODRAFT_176675 [Selaginella moellendorffii]
gi|300154207|gb|EFJ20843.1| hypothetical protein SELMODRAFT_176675 [Selaginella moellendorffii]
gi|300165800|gb|EFJ32407.1| hypothetical protein SELMODRAFT_230895 [Selaginella moellendorffii]
Length = 88
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S+ + + + D I G + GFD+++N++L+D E + R+ L
Sbjct: 13 PINLIFRFLQSKATIQVWLFEQKDLRIEGRIIGFDEYMNLVLDDAYEISLKKKSRK--PL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 61
>gi|195657879|gb|ACG48407.1| small nuclear ribonucleoprotein G [Zea mays]
Length = 67
Score = 40.0 bits (92), Expect = 0.59, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
++ I M ++ ++GTL GFD F+N++++++ E G T + +++ GN++ M+
Sbjct: 4 KLQIKMNANRVVIGTLRGFDQFMNLVVDNIVEV----NGNDKTDIGMVVIRGNSVVMI 57
>gi|392868828|gb|EAS34628.2| small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 209
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 28/122 (22%)
Query: 83 PITCAYSRSHQYRTL-THLLYTMTAPSVATNPSTLLP---------LELVDKCIGSRIHI 132
P+ +S+ HQ T AP + + P L P L+L DK ++ +
Sbjct: 40 PVGPPHSQQHQMPPGNTPPQQQGGAPVLPSGPPQLPPQLFTTAAQLLDLTDK----KLVL 95
Query: 133 IMKNDKEIVGTLNGFDDFVNMLLEDVTE-------YESTPEGRRITKLDQILLNGNNITM 185
I+++ ++++G L +D F N++L+D E Y P G L+ G N+ +
Sbjct: 96 ILRDGRKLIGVLRSWDQFANLVLQDTVERVYSGNLYGEEPRGV-------YLVRGENVLL 148
Query: 186 LG 187
LG
Sbjct: 149 LG 150
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--ESTPEGRRIT 171
S+ + L+++ K +GS + + ++N K + G L G+D +N++LED E E+T
Sbjct: 2 SSDVSLKILSKSVGSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELIDENTQ-----N 56
Query: 172 KLDQILLNGNNITML 186
KL I++ G++I M+
Sbjct: 57 KLGTIVVRGDSIVMI 71
Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
S+ + L+++ K +GS + + ++N K + G L G+D +N++LED + D +
Sbjct: 2 SSDVSLKILSKSVGSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDELIDEN 53
>gi|7269933|emb|CAB81026.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
Length = 86
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L++ E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|85107508|ref|XP_962388.1| hypothetical protein NCU06354 [Neurospora crassa OR74A]
gi|28923993|gb|EAA33152.1| predicted protein [Neurospora crassa OR74A]
Length = 96
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE---STPEGRRITKLDQILLNGNNITML 186
I+GT+ GFD+F+N+++++ E + T E +L QILL G+N++++
Sbjct: 42 IIGTIRGFDEFMNLVIDNAIEVKLVSKTNETEERRELGQILLKGDNVSLI 91
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 61
>gi|388853835|emb|CCF52556.1| related to LSM1-Sm-like (Lsm) protein [Ustilago hordei]
Length = 148
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M A + +N + LVD C+ ++ +++++ K+++G L +D F N++L+D E
Sbjct: 1 MDAQDIVSNIAFTTSGSLVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVF 59
Query: 164 TPEGRRITKLDQ--ILLNGNNITMLG 187
G R + + L+ G N+ ++G
Sbjct: 60 V--GNRYGDIVRGVFLVRGENVVLMG 83
Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
M A + +N + LVD C+ ++ +++++ K+++G L +D F N++L+D +
Sbjct: 1 MDAQDIVSNIAFTTSGSLVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVE 56
>gi|221120336|ref|XP_002162004.1| PREDICTED: probable small nuclear ribonucleoprotein G-like [Hydra
magnipapillata]
Length = 76
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
TNP L K + R+H+ + ++ + G L GFD F+N++++D E ST E
Sbjct: 3 KTNPPEL------KKYMDKRLHLKLNCNRSVTGILRGFDPFMNLVIDDTVENTSTQERNN 56
Query: 170 ITKLDQILLNGNNITML 186
I +++ GN++ ++
Sbjct: 57 I---GMVVIRGNSVVLM 70
>gi|198433468|ref|XP_002128408.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm3
[Ciona intestinalis]
Length = 105
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + R+++ M+N++E+ G L+ +D +NM+L +V E
Sbjct: 19 PLDLIRLSLDERVYVKMRNERELRGRLHAYDQHLNMVLGEVEE 61
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + R+++ M+N++E+ G L+ +D +NM+L +V +
Sbjct: 19 PLDLIRLSLDERVYVKMRNERELRGRLHAYDQHLNMVLGEVEET 62
>gi|345778417|ref|XP_003431727.1| PREDICTED: uncharacterized protein LOC100682645 [Canis lupus
familiaris]
Length = 181
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 94 YRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNM 153
+ TL H ++++ S S+ P + K + ++ + + + + + G L GFD F+N+
Sbjct: 88 FATLKHSCRSLSSLSKCYEQSSQPPK--LKKFMDKKLSLKLNDGRHVQGILQGFDPFMNL 145
Query: 154 LLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
++++ E ++ + I +++ GNNI ML
Sbjct: 146 VIDECVEMATSGQQNNI---GMVVIRGNNIIML 175
>gi|358382645|gb|EHK20316.1| hypothetical protein TRIVIDRAFT_68894 [Trichoderma virens Gv29-8]
Length = 129
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L++V +++PEG + +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVV--QTSPEGDKFMRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++K + + + + +K +E G LNG+D +N++L++ E + G I KL ++
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNLVLQNAEEIQG---GEVIRKLGSVV 61
Query: 178 LNGNNITML 186
+ G+ + +
Sbjct: 62 IRGDTVVFV 70
>gi|313247586|emb|CBY15769.1| unnamed protein product [Oikopleura dioica]
Length = 103
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI + ++N++E+ G L+ FD +NM+L DV E
Sbjct: 19 PLDLLRLSLDERIFVKLRNERELTGRLHAFDQHLNMILGDVEE 61
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI + ++N++E+ G L+ FD +NM+L DV +
Sbjct: 19 PLDLLRLSLDERIFVKLRNERELTGRLHAFDQHLNMILGDVEET 62
>gi|168008828|ref|XP_001757108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691606|gb|EDQ77967.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
+ T P L+ L K SRI I + + D I G + GFD+++N++LE+ E
Sbjct: 5 VQRIMTQPINLIFRFLQSK---SRIQIWLFEQKDMRIEGRIIGFDEYMNLVLEEAEEVSL 61
Query: 164 TPEGRRITKLDQILLNGNNITML 186
R+ L +ILL G+NIT++
Sbjct: 62 KKNTRK--PLGRILLKGDNITLM 82
>gi|154311062|ref|XP_001554861.1| hypothetical protein BC1G_06649 [Botryotinia fuckeliana B05.10]
Length = 690
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +K+ + + G L D ++N+ L++V + ++P+G + T+L +
Sbjct: 2 VLPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQ--TSPDGDKFTRLPE 59
Query: 176 ILLNGNNITML 186
I + GNNI L
Sbjct: 60 IYVKGNNIKYL 70
>gi|145237192|ref|XP_001391243.1| small nuclear ribonucleoprotein E [Aspergillus niger CBS 513.88]
gi|134075709|emb|CAK96601.1| unnamed protein product [Aspergillus niger]
gi|350635406|gb|EHA23767.1| hypothetical protein ASPNIDRAFT_40173 [Aspergillus niger ATCC 1015]
gi|358369432|dbj|GAA86046.1| small nuclear ribonucleoprotein SmE [Aspergillus kawachii IFO 4308]
Length = 95
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E +S E RR L QILL G+N++++
Sbjct: 43 IEGKIRGFDEFMNLVIDDAVEVRMATKSEEEKRR--PLGQILLKGDNVSLI 91
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
P +L+ I R+++ ++ D+E+ GTL+ +D +N++L DV E
Sbjct: 20 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEE 62
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
P +L+ I R+++ ++ D+E+ GTL+ +D +N++L DV +
Sbjct: 20 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEET 63
>gi|402220188|gb|EJU00260.1| U6 snRNA-associated Sm-like protein LSm7 [Dacryopinax sp. DJM-731
SS1]
Length = 120
Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQILLNGNNITML 186
RI + + +E+ G L GFD +N++L+DV E S P +R L ++L G IT+L
Sbjct: 46 RIRVKFQGGREVTGVLKGFDQLMNLVLDDVVENLSSEPPKQR--NLGLVVLRGPTITLL 102
>gi|452077675|gb|AGF93625.1| like-Sm ribonucleoprotein, eukaryotic and archaea-type, core
[uncultured organism]
Length = 73
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P +++ + + + +++K+ + GTL GFDD +N++LED TE + RRI I+
Sbjct: 6 PSNFLNENLDTEVELLLKDGSILKGTLIGFDDHMNLVLED-TEEKKEDSRRRIG---TII 61
Query: 178 LNGNNITML 186
L GNN+ L
Sbjct: 62 LRGNNVVTL 70
>gi|426195723|gb|EKV45652.1| hypothetical protein AGABI2DRAFT_72502 [Agaricus bisporus var.
bisporus H97]
Length = 78
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + ++ + ++ +++ GTL G+D F+N++++D E E+TP + + Q+++ GN
Sbjct: 9 LKKYMDKKLFVHLQGGRKVSGTLRGYDLFLNLVIDDAIE-ETTPAQKH--PIGQVVIRGN 65
Query: 182 NITMLGLHTHCGMRP 196
++T + T +RP
Sbjct: 66 SVT--SMETLEAIRP 78
>gi|294952865|ref|XP_002787488.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus ATCC
50983]
gi|239902490|gb|EER19284.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus ATCC
50983]
Length = 93
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 117 LPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
+P+ L+ + + + I++ D + G + GFD+++N++L+D E + + RR
Sbjct: 13 MPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEVNTKKDTRR--P 70
Query: 173 LDQILLNGNNITML 186
+ +ILL G+NIT++
Sbjct: 71 VGRILLKGDNITLM 84
>gi|427786001|gb|JAA58452.1| Putative small ribonucleoprotein particle protein sme
[Rhipicephalus pulchellus]
Length = 94
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHI---IMKN-DKEIVGTLNGFDDFVNMLLEDVTEY 161
P + P+ L+ + + +R I + +N I G + GFD+++N++L+D E
Sbjct: 6 GPGQKVQKVMVQPINLIFRYLQNRARIQVWLYENVHLRIEGHIIGFDEYMNLVLDDAEEI 65
Query: 162 ESTPEGRRITKLDQILLNGNNITML 186
+ P+ R+ ++ +ILL G NIT++
Sbjct: 66 YTKPKHRK--QVGRILLKGENITLI 88
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 15 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 63
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D +
Sbjct: 15 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEET 58
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + K + S + I +K D+E G L FD +N++L D E + +G +L +L
Sbjct: 9 PLDALGKSVNSPVLIKLKGDREFRGILKSFDLHMNLVLNDAEELQ---DGEVTRRLGVVL 65
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 66 IRGDNIV 72
>gi|320168707|gb|EFW45606.1| hypothetical protein CAOG_03590 [Capsaspora owczarzaki ATCC 30864]
Length = 87
Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 116 LLPLELVDKCI--GSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
+LP+ L+ K + +R+ I + + + G + GFD+++N++L+D E + + R+
Sbjct: 10 VLPINLIFKYLQTKTRVQIWLYEQASMRVEGVIVGFDEYMNLVLDDAEELNAKSQTRK-- 67
Query: 172 KLDQILLNGNNITML 186
+ +ILL G+NIT++
Sbjct: 68 NVGRILLKGDNITLI 82
>gi|291235504|ref|XP_002737683.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like
[Saccoglossus kowalevskii]
Length = 92
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVT 159
M + P+ L+ + + SR I + + + I G + GFD+++N++L+D
Sbjct: 1 MAYKGQKVQKVMVQPINLIFRYLQSRSRIQVWLYEQVNMRIEGHIIGFDEYMNLVLDDAE 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
EY + R+ L +++L G+NIT++
Sbjct: 61 EYHMKSKTRKT--LGRVMLKGDNITLI 85
>gi|161527598|ref|YP_001581424.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407461586|ref|YP_006772903.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
gi|160338899|gb|ABX11986.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|407045208|gb|AFS79961.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis
AR1]
Length = 81
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S PL + K ++ + +KN+ E G ++ D ++N+++ D E EG+ I
Sbjct: 6 SAKRPLTTLQKSTKKKVTVRLKNEVEYKGKMDNVDSYMNLIMTDAEELH---EGKTIANY 62
Query: 174 DQILLNGNNITMLGLHTH 191
++++ GNN+ + L
Sbjct: 63 GRVIVRGNNVLFIKLENE 80
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + ++++ M+ND+E+ G L+ +D +NM+L DV E
Sbjct: 13 PLDLMKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEE 55
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 13 PLDLMKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEEI 56
>gi|71017769|ref|XP_759115.1| hypothetical protein UM02968.1 [Ustilago maydis 521]
gi|46098907|gb|EAK84140.1| hypothetical protein UM02968.1 [Ustilago maydis 521]
Length = 148
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M A + +N + LVD C+ ++ +++++ K+++G L +D F N++L+D E
Sbjct: 1 MDAHDIVSNIAFTTSGSLVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVF 59
Query: 164 TPEGRRITKLDQ--ILLNGNNITMLG 187
G R + + L+ G N+ ++G
Sbjct: 60 V--GNRYGDVARGIFLVRGENVVLMG 83
>gi|358394136|gb|EHK43537.1| hypothetical protein TRIATDRAFT_266952 [Trichoderma atroviride IMI
206040]
Length = 130
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L++V +++PEG + +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVMCDTWMNLTLKEVV--QTSPEGDKFMRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|344229144|gb|EGV61030.1| U6 snRNA-associated Sm-like protein LSm6 [Candida tenuis ATCC
10573]
gi|344229145|gb|EGV61031.1| hypothetical protein CANTEDRAFT_116192 [Candida tenuis ATCC 10573]
Length = 83
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
S+ T+PST L IGS++ + + N VG L D F+N++++ E+
Sbjct: 8 SSIKTDPSTFLS-----GIIGSKVSVKLNNGVSYVGNLQSIDGFMNIVMDTTAEFIGGAA 62
Query: 167 GRRITKLDQILLNGNNI 183
TK + + GNN+
Sbjct: 63 SG--TKYGDVFIRGNNV 77
>gi|154283627|ref|XP_001542609.1| small nuclear ribonucleoprotein SmG [Ajellomyces capsulatus NAm1]
gi|150410789|gb|EDN06177.1| small nuclear ribonucleoprotein SmG [Ajellomyces capsulatus NAm1]
gi|225561938|gb|EEH10218.1| hypothetical protein HCBG_01863 [Ajellomyces capsulatus G186AR]
gi|240275552|gb|EER39066.1| hypothetical protein HCDG_07010 [Ajellomyces capsulatus H143]
gi|325091383|gb|EGC44693.1| hypothetical protein HCEG_03908 [Ajellomyces capsulatus H88]
Length = 78
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ + + +++++G L G+D F+N+++++ E +S E +L +++ GN
Sbjct: 8 LKKYMEKRLFVQLNGNRKVIGILRGYDVFMNIVMDEAVEEKSGGEK---VRLGMVVIRGN 64
Query: 182 NITMLGLHTHCGMR 195
++ ML G R
Sbjct: 65 SVVMLEALERIGDR 78
>gi|310798750|gb|EFQ33643.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 84
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L++ E EG +L +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRLGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|19112516|ref|NP_595724.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe 972h-]
gi|74638881|sp|Q9USZ3.1|RUXE_SCHPO RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|6165482|emb|CAB59808.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe]
Length = 84
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I + + D + G + GFD+F+N++L+D + ++ R +L +ILL G+NIT++
Sbjct: 28 IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKR---ELGRILLKGDNITLI 81
>gi|18417572|ref|NP_567844.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297798942|ref|XP_002867355.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|21593343|gb|AAM65292.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968366|dbj|BAD42875.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968768|dbj|BAD43076.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51971773|dbj|BAD44551.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|88010920|gb|ABD38873.1| At4g30330 [Arabidopsis thaliana]
gi|297313191|gb|EFH43614.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|332660353|gb|AEE85753.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
Length = 88
Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L++ E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|403214951|emb|CCK69451.1| hypothetical protein KNAG_0C03440 [Kazachstania naganishii CBS
8797]
Length = 186
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR------- 168
+LPL L+ G R+ I +KN + I G LN D+++N+ L +VTE+++ G
Sbjct: 1 MLPLYLLTNAKGQRMSIELKNGEIIEGELNNVDNWMNLTLINVTEHKTRDFGEISAGKQV 60
Query: 169 RITKLDQILLNG 180
+ KL +I L G
Sbjct: 61 EMIKLQEIYLKG 72
>gi|294950648|ref|XP_002786721.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus ATCC
50983]
gi|239901040|gb|EER18517.1| Small nuclear ribonucleoprotein G, putative [Perkinsus marinus ATCC
50983]
Length = 87
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
RI + + D+ +VG + G+D F+N++L++ E S E R I ++ GN+I M
Sbjct: 23 KRIDVKLNADRHVVGVVRGYDQFMNLVLDNAVELVSRTEKREIG---MAVIRGNSILM 77
>gi|440801773|gb|ELR22778.1| LSM domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 135
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
P T+ +E VD RI +++++ ++++G L FD + N++LE E E
Sbjct: 16 PGTVSLVEEVD----HRILVVLQDGRKLLGVLRSFDQYANLVLEQTIERIYVGEQYAEKN 71
Query: 173 LDQILLNGNNITMLG 187
L L+ G+NI +LG
Sbjct: 72 LGLFLVRGDNIVLLG 86
>gi|440638708|gb|ELR08627.1| hypothetical protein GMDG_03318 [Geomyces destructans 20631-21]
Length = 124
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D ++N+ L++V +++PEG + +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLKEVV--QTSPEGDKFFRLAE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|406866709|gb|EKD19748.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 95
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E +++ E RR L QILL G+N++++
Sbjct: 41 RIEGKIRGFDEFMNLVIDDAVEVKQATKTSAESRR--DLGQILLKGDNVSLI 90
>gi|242051601|ref|XP_002454946.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
gi|241926921|gb|EES00066.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
Length = 88
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L+D E R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKNTRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|448356655|ref|ZP_21545382.1| Sm ribonucleoprotein-like protein [Natrialba chahannaoensis JCM
10990]
gi|445652767|gb|ELZ05650.1| Sm ribonucleoprotein-like protein [Natrialba chahannaoensis JCM
10990]
Length = 81
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS 61
PL++++ +G R+ + +K+ E G L G+D +N++LE D DS
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVLEVAADGGDS 51
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLE---------DVTEYEST 164
PL++++ +G R+ + +K+ E G L G+D +N++LE D TE EST
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEFAGELAGYDQHMNLVLEVAADGGDSDDATETEST 60
>gi|365984381|ref|XP_003669023.1| hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS 421]
gi|343767791|emb|CCD23780.1| hypothetical protein NDAI_0C01190 [Naumovozyma dairenensis CBS 421]
Length = 94
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 36/112 (32%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
M+ PI C + Q +T LY + +G RI
Sbjct: 10 MVPPINCIFGYLQQQTPVTFWLY---------------------EQVGIRI--------- 39
Query: 140 IVGTLNGFDDFVNMLLEDVTEYESTPE-----GRRITKLDQILLNGNNITML 186
G ++GFD+F+N++++D E P+ + T+L +I+L G+NIT++
Sbjct: 40 -TGKISGFDEFMNVVIDDAIEIPVDPKTGVENKAKGTQLGRIMLKGDNITLI 90
>gi|313222638|emb|CBY41662.1| unnamed protein product [Oikopleura dioica]
Length = 83
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 134 MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGL---HT 190
+ N + +VG L G D VN++L + E TPEG L L+ G+N+ ++G +T
Sbjct: 4 ISNKRVVVGILKGLDQVVNVVLANTEERVFTPEGVDRQALGLYLIRGDNVAVVGAVDENT 63
Query: 191 HCGM 194
GM
Sbjct: 64 ELGM 67
>gi|367008820|ref|XP_003678911.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
gi|359746568|emb|CCE89700.1| hypothetical protein TDEL_0A03680 [Torulaspora delbrueckii]
Length = 93
Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 42/115 (36%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
M+ PI C + Q +T L+ +G RI
Sbjct: 8 MVPPINCIFDYLQQQTLVTFWLFEQ---------------------VGIRIR-------- 38
Query: 140 IVGTLNGFDDFVNMLLEDVTE--------YESTPEGRRITKLDQILLNGNNITML 186
G ++GFD+F+N++++D E E +GR KL +ILL G+NIT++
Sbjct: 39 --GKISGFDEFMNVVIDDALEIPVDPKTGVEDIEKGR---KLGKILLKGDNITLI 88
>gi|348553541|ref|XP_003462585.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia porcellus]
Length = 93
Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 142 GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 46 GCIIGFDEYMNLILDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 88
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 120 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLN 179
+++ + +GS + + +K +KE+ G L +D +N++L D E +S G++I I++
Sbjct: 7 KVLAESLGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGSGKKI---GTIVIR 63
Query: 180 GNNITML 186
G+N+ ++
Sbjct: 64 GDNVILI 70
>gi|395326007|gb|EJF58421.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 87
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITK 172
P+ ++ K + R +++ + I GT+ GFD+F+N++++D E Y + RR +
Sbjct: 12 PINVIFKNLQQRTKVVIWLYDNIEMRIEGTIIGFDEFMNVVIDDAAEVYVKDAKPRR--E 69
Query: 173 LDQILLNGNNITML 186
L +ILL G+NIT++
Sbjct: 70 LGRILLKGDNITLI 83
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++K + + + + +K +E G LNG+D +N++LE+ E ++ G + KL ++
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNIVLENAEEIQN---GEVVRKLGSVV 61
Query: 178 LNGNNITML 186
+ G+ + +
Sbjct: 62 IRGDTVVFV 70
>gi|170065245|ref|XP_001867860.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
gi|167882312|gb|EDS45695.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
Length = 91
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIG--SRIHIIMKNDK--EIVGTLNGFDDFVNMLLEDVT 159
M+ + P+ L+ + + SR+ + + + I G + GFD+++N++L++
Sbjct: 1 MSFKGSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAE 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
EY + RR L +I+L G+NIT++
Sbjct: 61 EYNIKKQNRRT--LGRIMLKGDNITLI 85
>gi|428163538|gb|EKX32604.1| small nuclear ribonucleoprotein-like protein [Guillardia theta
CCMP2712]
Length = 91
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
T P L+ L +K SRI I + D I G + GFD+++N++L++ EY R
Sbjct: 9 TQPINLIFRFLQNK---SRIQIWLYENADLRIEGQIIGFDEYMNLVLDNAEEYHKKKGTR 65
Query: 169 RITKLDQILLNGNNITML 186
+ L +ILL G NIT++
Sbjct: 66 K--PLGRILLKGENITLM 81
>gi|345566656|gb|EGX49598.1| hypothetical protein AOL_s00078g87 [Arthrobotrys oligospora ATCC
24927]
Length = 75
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ + + ++I+G L G+D F+N+ ++D E ++ E RI +++ GN
Sbjct: 8 LKKYLEKRLFVQLNGSRKIIGVLRGYDIFLNLCMDDCIEEKAGGEKERIG---TVVIRGN 64
Query: 182 NITML 186
++ ML
Sbjct: 65 SVVML 69
>gi|119589573|gb|EAW69167.1| hCG23490, isoform CRA_b [Homo sapiens]
Length = 52
Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D E S + R+ +L +I+L G NIT+L
Sbjct: 2 RIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGGNITLL 47
>gi|115399850|ref|XP_001215514.1| small nuclear ribonucleoprotein E [Aspergillus terreus NIH2624]
gi|114191180|gb|EAU32880.1| small nuclear ribonucleoprotein E [Aspergillus terreus NIH2624]
Length = 94
Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 110 ATNPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE--- 162
A + L P+ + K + R I + + I G + GFD+F+N++++D E
Sbjct: 8 AARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVVDDAVEVRMAT 67
Query: 163 STPEGRRITKLDQILLNGNNITML 186
T E +R L QILL G+N++++
Sbjct: 68 KTDEEKR-RPLGQILLKGDNVSLI 90
>gi|385302463|gb|EIF46594.1| small nuclear ribonucleoprotein e [Dekkera bruxellensis AWRI1499]
Length = 79
Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+ G L GFD+F+N++L+D E ++ KL +LL G+NIT++
Sbjct: 29 RLTGVLKGFDEFMNVVLDDAVEISQGXSAKQ-RKLGTVLLKGDNITLI 75
>gi|448341319|ref|ZP_21530281.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
gi|445628366|gb|ELY81674.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
Length = 75
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 55
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 45
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158
PL++++ +G R+ + +K+ E VG L G+D +N++LEDV
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDV 45
>gi|389631277|ref|XP_003713291.1| sm snRNP core protein Smg1 [Magnaporthe oryzae 70-15]
gi|351645624|gb|EHA53484.1| sm snRNP core protein Smg1 [Magnaporthe oryzae 70-15]
gi|440466674|gb|ELQ35928.1| sm snRNP core protein Smg1 [Magnaporthe oryzae Y34]
gi|440476979|gb|ELQ58129.1| sm snRNP core protein Smg1 [Magnaporthe oryzae P131]
Length = 88
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P + K + ++ + + +++VG + G+D F+N++LED +E G ++ K+ ++
Sbjct: 4 PQPELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDA--FEEKDGGEKV-KIGTVV 60
Query: 178 LNGNNITML 186
+ GN++ ML
Sbjct: 61 IRGNSVVML 69
>gi|384252439|gb|EIE25915.1| small nuclear ribonucleo protein E [Coccomyxa subellipsoidea C-169]
Length = 87
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SR I + + D I G + GFD+++N++L++ E + R+ L
Sbjct: 12 PINLIFRFLQSRQKVQIWLYEQTDLRIEGRIIGFDEYMNLVLDEAEEVSMKRKTRK--AL 69
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 70 GRILLKGDNITLM 82
>gi|440640051|gb|ELR09970.1| small nuclear ribonucleoprotein G [Geomyces destructans 20631-21]
Length = 83
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E + E RI +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDGGEKVRIG---MVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE--YESTPEGRRI-TKLD 174
PL+L+ + + + ++ +E+ G L G+D NM+L D TE Y +P+ + + K D
Sbjct: 14 PLDLIRFQLDDYVVVKLRGARELYGKLQGYDSHCNMVLSDATETIYGDSPDTKPVKKKTD 73
Query: 175 QILLNGNNITML 186
+ + G+++ ++
Sbjct: 74 MVFVRGDSVILI 85
>gi|358253136|dbj|GAA52245.1| small nuclear ribonucleoprotein G [Clonorchis sinensis]
Length = 75
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 132 IIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I + ++E++GTL GFD F+N+++ D E T +G+++ ++D ++ GN+I ++
Sbjct: 18 IKLNGNREVIGTLRGFDAFMNIVINDAMEI--TKDGQQL-RIDMAVIRGNSINIV 69
>gi|296415636|ref|XP_002837492.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633364|emb|CAZ81683.1| unnamed protein product [Tuber melanosporum]
Length = 249
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL L++ G + + +KN + + G L D ++N+ L++V +++PEG + +L +
Sbjct: 117 LPLSLLNTAQGHPMLVELKNGETLNGHLVNCDTWMNLTLKEVV--QTSPEGDKFFRLAEC 174
Query: 177 LLNGNNITML 186
+ GNNI L
Sbjct: 175 YVRGNNIKYL 184
>gi|361126108|gb|EHK98124.1| putative small nuclear ribonucleoprotein G [Glarea lozoyensis
74030]
Length = 85
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E + E +L +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDGGE---KVRLGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++K + + + + +K +E GTL+G+D +N++L D E ++ G + KL ++
Sbjct: 4 PLDVLNKALKTPVLVRLKGGREFRGTLDGYDIHMNLVLVDAEEIQN---GEVVRKLGSVV 60
Query: 178 LNGNNITML 186
+ G+ + +
Sbjct: 61 IRGDTVVFV 69
>gi|343427129|emb|CBQ70657.1| probable LSM3-U6 snRNA-associated Sm-like protein [Sporisorium
reilianum SRZ2]
Length = 113
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
P +L+ I R+++ ++ D+E+ GTL+ +D +N++L DV E
Sbjct: 29 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEE 71
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
P +L+ I R+++ ++ D+E+ GTL+ +D +N++L DV +
Sbjct: 29 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEET 72
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 112 NPSTLL--PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
+P+ LL PL++V + R+ I + D+E++G L+ +D +NM+L DV E +T
Sbjct: 2 DPTVLLQEPLDIVRVSLDDRVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATT 56
Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 9 NPSTLL--PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+P+ LL PL++V + R+ I + D+E++G L+ +D +NM+L DV +
Sbjct: 2 DPTVLLQEPLDIVRVSLDDRVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEV 53
>gi|195615352|gb|ACG29506.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 12/76 (15%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTE---YESTPEGRRI 170
P+ L+ + + S RI I + + D I G + GFD+++N++LED E ++TP+
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTPK---- 68
Query: 171 TKLDQILLNGNNITML 186
L +ILL G+NIT++
Sbjct: 69 -TLGRILLKGDNITLM 83
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 76
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S + ++++D+ +G + I +K K I G L+GFD +N+LLED E EG+ L
Sbjct: 2 SVDMAVKVLDESLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLEDSVEI--LEEGKS-NDL 58
Query: 174 DQILLNGNNITML 186
I++ G+N+ ++
Sbjct: 59 GTIVVRGDNVVII 71
>gi|348563323|ref|XP_003467457.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia porcellus]
Length = 92
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+
Sbjct: 29 SRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDEEEIHSKTKSRK--QLGRIMLKGDNITL 86
Query: 186 L 186
L
Sbjct: 87 L 87
>gi|219127194|ref|XP_002183825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404548|gb|EEC44494.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 100
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 128 SRIHIIMKNDK--EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SR+ + + D +I G + GFD+++NM+++D E +S R+ ++ +ILL G+ +TM
Sbjct: 25 SRVRLWLYEDSRLQIEGQIIGFDEYMNMVMDDAVEIDSKKNVRQ--EVGRILLKGDAVTM 82
Query: 186 LGLHTHCGMRPYIQHSMGE 204
+ +RP GE
Sbjct: 83 --IQEAQPVRPAEVQPSGE 99
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
+V N +T PL+++ K + S++ I +K +E G L FD +N++L + E +
Sbjct: 2 TVQKNLNTSRPLDVLGKSLNSQVLIELKGGREFRGLLKSFDMHMNLVLNEAEELDGLETA 61
Query: 168 RRITKLDQILLNGNNIT 184
+R L +L+ G+NI
Sbjct: 62 KR---LGIVLIRGDNIV 75
>gi|290989307|ref|XP_002677279.1| predicted protein [Naegleria gruberi]
gi|284090886|gb|EFC44535.1| predicted protein [Naegleria gruberi]
Length = 89
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 127 GSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNIT 184
GSRI I + D I G + GFD+++N++L++ E + R+ K+ +ILL G+NI+
Sbjct: 22 GSRIQIWLYENTDLRIEGNILGFDEYMNIVLDETEEIYTKKSQRK--KIGRILLKGDNIS 79
Query: 185 ML 186
++
Sbjct: 80 LI 81
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE---------STPEG- 167
P +L+ + R+ I ++ D+EI G L+ +D +NM+L +V E + + P G
Sbjct: 13 PFDLIRLSLSERVFIKLRGDREIRGVLHAYDQHMNMILGEVEETQTIVDLDESAAQPVGT 72
Query: 168 -RRITK-LDQILLNGNNITMLG 187
R++ + +D + + G+++ +L
Sbjct: 73 LRQVKRQIDCLFVRGDSVVLLA 94
>gi|254567830|ref|XP_002491025.1| Core Sm protein Sm E [Komagataella pastoris GS115]
gi|238030822|emb|CAY68745.1| Core Sm protein Sm E [Komagataella pastoris GS115]
Length = 88
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLG 187
+I + +N+ I G + GFD+F+N+++++ E + +R KL ++LL G+NIT++
Sbjct: 28 QIWLYEQNNTRINGIIKGFDEFMNVVVDEAIEINLKTQKQR--KLGRLLLKGDNITLIS 84
>gi|67522076|ref|XP_659099.1| hypothetical protein AN1495.2 [Aspergillus nidulans FGSC A4]
gi|40744652|gb|EAA63808.1| hypothetical protein AN1495.2 [Aspergillus nidulans FGSC A4]
gi|259486817|tpe|CBF84982.1| TPA: small nuclear ribonucleoprotein SmG, putative (AFU_orthologue;
AFUA_8G04960) [Aspergillus nidulans FGSC A4]
Length = 78
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ + +++++G L G+D F+N++L++ +E P G ++ + I++ GN
Sbjct: 8 LKKYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEA--FEEKPGGEKVA-IGMIVIRGN 64
Query: 182 NITML 186
++ ML
Sbjct: 65 SVVML 69
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
P +L+ I R+++ ++ D+E+ GTL+ +D +N++L DV E
Sbjct: 25 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEE 67
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
P +L+ I R+++ ++ D+E+ GTL+ +D +N++L DV +
Sbjct: 25 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEET 68
>gi|402217673|gb|EJT97752.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 135
Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 121 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ--ILL 178
LVD C+ ++ I++++ +++VG L +D F N++LED YE G + + ++
Sbjct: 13 LVD-CVDKKVLIVLRDGRKLVGVLRSYDQFANLVLED--SYERIFHGLEYADVWKGVFVI 69
Query: 179 NGNNITMLG 187
G N+ +LG
Sbjct: 70 RGENVVLLG 78
Score = 35.8 bits (81), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 18 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 54
LVD C+ ++ I++++ +++VG L +D F N++LED
Sbjct: 13 LVD-CVDKKVLIVLRDGRKLVGVLRSYDQFANLVLED 48
>gi|390937928|ref|YP_006401666.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
gi|390191035|gb|AFL66091.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
Length = 93
Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+++ G + + +K E VGTL+ D +N++L D TEY +GR ++ +I+
Sbjct: 13 PLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYSG--DGRPTSRYGKII 70
Query: 178 LNGNNITML 186
+ G+++ +
Sbjct: 71 IRGSHVEFI 79
>gi|303310042|ref|XP_003065034.1| Small nuclear ribonucleoprotein E , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240104693|gb|EER22889.1| Small nuclear ribonucleoprotein E , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320033257|gb|EFW15206.1| hypothetical protein CPSG_08394 [Coccidioides posadasii str.
Silveira]
gi|392867032|gb|EAS29780.2| LSM domain-containing protein [Coccidioides immitis RS]
Length = 94
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E + E RR +L QILL G+N++++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAVEVRVPTKDQEEQRR--QLGQILLKGDNVSLI 90
>gi|448377944|ref|ZP_21560567.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
gi|445654917|gb|ELZ07766.1| Like-Sm ribonucleoprotein core [Halovivax asiaticus JCM 14624]
Length = 99
Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE------GRRIT 171
PL++++ +G R+ + +K E VG L G+D +N++LE+ E +T E +
Sbjct: 24 PLDVLEAALGDRVRVNLKTGTEYVGELAGYDQHMNLVLEEA-ERTATSETAPADGDEETS 82
Query: 172 KLDQILLNGNNI 183
D ++ G+N+
Sbjct: 83 SQDTTIIRGDNV 94
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 55
PL++++ +G R+ + +K E VG L G+D +N++LE+
Sbjct: 24 PLDVLEAALGDRVRVNLKTGTEYVGELAGYDQHMNLVLEEA 64
>gi|116196218|ref|XP_001223921.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
gi|88180620|gb|EAQ88088.1| hypothetical protein CHGG_04707 [Chaetomium globosum CBS 148.51]
Length = 127
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G + + +KN + + G L D ++N+ L +V + ++PEG + +L +
Sbjct: 1 MLPLGLLNAAQGHPMLVELKNGETLNGHLVLCDTWMNLTLREVVQ--TSPEGDKFVRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|355721057|gb|AES07138.1| small nuclear ribonucleoprotein polypeptide E [Mustela putorius
furo]
Length = 82
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E S
Sbjct: 1 VQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 57
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+ R+ +L +I+L G+NIT+L
Sbjct: 58 KTKLRK--QLGRIMLKGDNITLL 78
>gi|347838352|emb|CCD52924.1| similar to small nuclear ribonucleoprotein e [Botryotinia
fuckeliana]
Length = 94
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK--LDQILLNGNNITML 186
I G + GFD+F+N++L+D E + + ++ L QILL G+N++++
Sbjct: 40 RIEGKIRGFDEFMNLVLDDAVEVRQATKDKEESRRALGQILLKGDNVSLI 89
>gi|340897533|gb|EGS17123.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 82
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + + ++G L G+D F+N++L+D E P G ++ KL + + GN++
Sbjct: 10 KYLDKRLFVELNGSRRVIGVLRGYDVFLNIVLDDAV--EERPNGEKV-KLGMVTIRGNSV 66
Query: 184 TML 186
+L
Sbjct: 67 VIL 69
>gi|339245769|ref|XP_003374518.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
gi|316972305|gb|EFV55988.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
Length = 76
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P EL K + ++ + + D++I G L GFD F+NM++++ E+ T G +I + ++
Sbjct: 6 PPEL-KKYMDKKMQLRLNGDRKISGVLRGFDPFMNMVIDEAVEHLKT--GEQIM-IGMVV 61
Query: 178 LNGNNITML 186
+ GN++T++
Sbjct: 62 VRGNSVTLM 70
>gi|320590330|gb|EFX02773.1| bar domain containing protein [Grosmannia clavigera kw1407]
Length = 1158
Score = 39.3 bits (90), Expect = 0.92, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 92 HQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFV 151
+ RT + LL + V+ + +LPL L+ G + + +KN + + G L D ++
Sbjct: 344 YSQRTASRLLTSCDNKPVS---AKMLPLGLLSAAQGHPMLVELKNGETLNGHLVQCDTWM 400
Query: 152 NMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
N+ L+ V +++P+G ++ ++ + GNNI L
Sbjct: 401 NLTLKGVV--QTSPDGDSFMRIPEVYVKGNNIKYL 433
>gi|330040574|ref|XP_003239959.1| small nuclear ribonucleoprotein G [Cryptomonas paramecium]
gi|327206885|gb|AEA39061.1| small nuclear ribonucleoprotein G [Cryptomonas paramecium]
Length = 74
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 19 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 52
++ IG +++I +KN++EI G L GFD F+N++L
Sbjct: 10 INYLIGKKVYIFLKNNQEIEGFLVGFDSFLNLVL 43
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 155
++ IG +++I +KN++EI G L GFD F+N++L
Sbjct: 10 INYLIGKKVYIFLKNNQEIEGFLVGFDSFLNLVL 43
>gi|301765636|ref|XP_002918237.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 92
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 142 GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 45 GCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>gi|397505808|ref|XP_003823438.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 128 SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + +I G + GFD+++N++L+D E S + R+ +L +I+L G+NI +
Sbjct: 29 SRIQVWLYEPVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNINL 86
Query: 186 L 186
L
Sbjct: 87 L 87
>gi|354484098|ref|XP_003504228.1| PREDICTED: hypothetical protein LOC100764959 [Cricetulus griseus]
Length = 195
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E S + R+ +L +I+L G+N+T+
Sbjct: 132 SRIQVRLYEQVNIRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLEGDNMTL 189
Query: 186 L 186
L
Sbjct: 190 L 190
>gi|17544148|ref|NP_500964.1| Protein LSM-8 [Caenorhabditis elegans]
gi|351059336|emb|CCD74179.1| Protein LSM-8 [Caenorhabditis elegans]
Length = 98
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
+D + ++++ + + IVG L GFD +N+++ED E S EG T L ++ G
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 181 NNITMLG 187
N+ ++G
Sbjct: 65 ENVAIIG 71
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 118 PLELVDKCIGSRIHII--MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK--- 172
P+ L+ + SR +I ++N+ +I+ + FD NM+LE+V E + EG+++T
Sbjct: 29 PMSLLHDAMTSRSPVIISLRNNHKIIARIKSFDRHCNMVLENVKELWTEKEGKKLTNKER 88
Query: 173 -LDQILLNGNNITML 186
+ ++ L G+++ ++
Sbjct: 89 FISKLFLRGDSVIVV 103
>gi|116779305|gb|ABK21228.1| unknown [Picea sitchensis]
Length = 88
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 101 LYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDV 158
+ T + T P L+ L K +RI I + + D I G + GFD+++N++LED
Sbjct: 1 MATTRVQRIMTQPINLIFRFLQSK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDA 57
Query: 159 TEYESTPEGRRITKLDQILLNGNNITML 186
E + + L +ILL G+NIT++
Sbjct: 58 EEISVKRKTHK--PLGRILLKGDNITLM 83
>gi|296411223|ref|XP_002835333.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629111|emb|CAZ79490.1| unnamed protein product [Tuber melanosporum]
Length = 93
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E + E RR +L QILL G+N++++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAVEVKLKTKDEEESRR--ELGQILLKGDNVSLI 90
>gi|217071220|gb|ACJ83970.1| unknown [Medicago truncatula]
gi|388520551|gb|AFK48337.1| unknown [Medicago truncatula]
Length = 88
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
V T P L+ L K +RI I + + D I G + GFD+++N+ L+D E
Sbjct: 7 QRVMTQPINLIFRFLQSK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLALDDAEEVNVK 63
Query: 165 PEGRRITKLDQILLNGNNITML 186
+ ++ L +ILL G+NIT++
Sbjct: 64 KKSKKT--LGRILLKGDNITLM 83
>gi|164657750|ref|XP_001730001.1| hypothetical protein MGL_2987 [Malassezia globosa CBS 7966]
gi|159103895|gb|EDP42787.1| hypothetical protein MGL_2987 [Malassezia globosa CBS 7966]
Length = 147
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE--- 160
M A + N + LVD + R+ +++++ ++++G L +D F N++L+D E
Sbjct: 1 MEAQEILANIAFTTSGALVD-LVDKRVIVVLRDGRKLLGVLRSYDQFANLVLQDAVERIF 59
Query: 161 ----YESTPEGRRITKLDQILLNGN 181
Y P+G I + + ++L G
Sbjct: 60 LGHRYGDVPKGTFIVRGENVVLMGE 84
>gi|424513743|emb|CCO66365.1| U6 snRNA-associated Sm-like protein LSm1 [Bathycoccus prasinos]
Length = 124
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-------YESTPEGRRITKLDQILL 178
I +I ++++++ IVGTL FD F N++LE+ E Y P G I + + ++L
Sbjct: 17 IDKKILVVLRDNSNIVGTLRSFDQFANIVLENAVERMIVGTHYSDVPLGLYIVRGENVVL 76
Query: 179 NGN 181
G+
Sbjct: 77 MGD 79
>gi|346324729|gb|EGX94326.1| small nuclear ribonucleoprotein E [Cordyceps militaris CM01]
Length = 141
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 79 PMITPITCAY-SRSHQYRTLTH---LLYTMTAPSVATNPSTLLPLELVDKCIGSR----I 130
P I P + SR +Y L LL MT L P+ ++ K + + +
Sbjct: 18 PYIPPDCAEFLSREPKYTFLAEYFILLPNMTGRGGGGRRVLLPPINMIFKLLQTNSTVSV 77
Query: 131 HIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST-----PEGRRITKLDQILLNGNNITM 185
+ + I G + GFD+F+N++L+D E E RR L QILL G+N+++
Sbjct: 78 WLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVRQITKTNDKESRR--PLGQILLKGDNVSL 135
Query: 186 L 186
+
Sbjct: 136 I 136
>gi|255710607|ref|XP_002551587.1| KLTH0A02970p [Lachancea thermotolerans]
gi|238932964|emb|CAR21145.1| KLTH0A02970p [Lachancea thermotolerans CBS 6340]
Length = 76
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + +++I + +++VG L GFD F+N++L+D E +G + Q ++ GN+I
Sbjct: 9 KYMDKKVYIQLNGSRKLVGVLRGFDIFLNVVLDDAVEVR--KDGTKFAMGSQSVVRGNSI 66
Query: 184 TML 186
L
Sbjct: 67 VSL 69
>gi|195606768|gb|ACG25214.1| small nuclear ribonucleoprotein G [Zea mays]
Length = 80
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + ++ I M ++ ++GTL GFD F+N++++++ E G T + +++ GN++
Sbjct: 12 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNIVEV----NGNDKTDIGMVVIRGNSV 67
Query: 184 TML 186
M+
Sbjct: 68 VMI 70
>gi|443922752|gb|ELU42142.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 137
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL L++ + + +KN + G L D F+N+ L +V Y+++PEG R KL +
Sbjct: 12 LPLSLLNAAQNKPMLVELKNGETFNGHLVNCDTFMNITLREV--YQTSPEGDRFWKLKEC 69
Query: 177 LLNGNNITML 186
+ G+ I L
Sbjct: 70 YIRGSMIKYL 79
>gi|294956367|ref|XP_002788910.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239904570|gb|EER20706.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 94
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 117 LPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
+P+ L+ + + + I++ D + G + GFD+++N++L+D E + + RR
Sbjct: 13 MPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEVNTKKDTRR--P 70
Query: 173 LDQILLNGNNITML 186
+ +ILL G+NIT++
Sbjct: 71 VGRILLKGDNITLM 84
>gi|168005030|ref|XP_001755214.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693807|gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 97
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L +V E ++ E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVE 60
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ +++D+E+ G L+ +D +NM+L +V +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEV 55
>gi|296421463|ref|XP_002840284.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636499|emb|CAZ84475.1| unnamed protein product [Tuber melanosporum]
Length = 76
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E + E RI +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGILRGYDVFLNIVLDDAIEEKDGGEKVRIG---TVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|260786161|ref|XP_002588127.1| hypothetical protein BRAFLDRAFT_124953 [Branchiostoma floridae]
gi|229273285|gb|EEN44138.1| hypothetical protein BRAFLDRAFT_124953 [Branchiostoma floridae]
Length = 874
Score = 38.9 bits (89), Expect = 1.1, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 100 LLYTMTAPSVATNPSTLLPLELVDKCIGSRI--HIIMKNDKEIVGTLNGFDDFVNMLLED 157
L +T S + P+ LL + ++ C ++ + + ++++ G L GFD F+N+++++
Sbjct: 784 LAFTYNGSSSGSQPTVLL-MAVMWSCAAVKLAAEVQLNGNRKVSGILRGFDPFMNLVIDE 842
Query: 158 VTEYESTPEGRRITKLDQILLNGNNITML 186
E G + +++ GN+I ML
Sbjct: 843 CVEL----RGNERQSIGMVVIRGNSIIML 867
>gi|389633501|ref|XP_003714403.1| sm snRNP core protein Sme1 [Magnaporthe oryzae 70-15]
gi|351646736|gb|EHA54596.1| sm snRNP core protein Sme1 [Magnaporthe oryzae 70-15]
Length = 95
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 7/52 (13%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEY-----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E ++T E RR L QILL G+N++++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAIEVKQITKDNTEEKRR--PLGQILLKGDNVSLI 91
>gi|347837957|emb|CCD52529.1| hypothetical protein [Botryotinia fuckeliana]
Length = 122
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +K+ + + G L D ++N+ L++V + ++P+G + T+L +
Sbjct: 2 VLPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQ--TSPDGDKFTRLPE 59
Query: 176 ILLNGNNITML 186
I + GNNI L
Sbjct: 60 IYVKGNNIKYL 70
>gi|156034609|ref|XP_001585723.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980]
gi|154698643|gb|EDN98381.1| hypothetical protein SS1G_13239 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 122
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +K+ + + G L D ++N+ L++V + ++P+G + T+L +
Sbjct: 2 VLPLGLLTAAQGHPMLVELKDGETLNGHLVSCDTWMNLTLKEVVQ--TSPDGDKFTRLPE 59
Query: 176 ILLNGNNITML 186
I + GNNI L
Sbjct: 60 IYVKGNNIKYL 70
>gi|19113071|ref|NP_596279.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|12230213|sp|O14352.1|LSM4_SCHPO RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|2276355|emb|CAB10801.1| U6 snRNP-associated protein Lsm4 (predicted) [Schizosaccharomyces
pombe]
Length = 121
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G I + +KN + G L D+++N+ L +V + P+G + +L +
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVI--RTMPDGDKFFRLPE 58
Query: 176 ILLNGNNITMLGLH 189
+ GNNI L +
Sbjct: 59 CYIRGNNIKYLRIQ 72
>gi|448300402|ref|ZP_21490403.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
gi|445585834|gb|ELY40123.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
Length = 75
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 56
PL++++ +G R+ + +K+ E G L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYDGDLAGYDQHMNLVLEDVT 46
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
PL++++ +G R+ + +K+ E G L G+D +N++LEDVT
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYDGDLAGYDQHMNLVLEDVT 46
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + K + S + I +K ++E G L FD +N++L D E E+ G KL +L
Sbjct: 13 PLDTLGKSLNSPVLIRLKGEREFRGILKSFDLHMNLVLNDAEEIEN---GEVTRKLGTVL 69
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 70 IRGDNIV 76
>gi|307213117|gb|EFN88639.1| Probable small nuclear ribonucleoprotein E [Harpegnathos saltator]
Length = 295
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 90 RSHQYRTLTHLLYT--MTAPSVATNPSTLLPLELVDKCIGSRIHI-IMKN-DKEIVGTLN 145
R++ RT T + Y V P L+ L ++ SR+ + + +N + I G +
Sbjct: 192 RTNFPRTATKMSYKGPQKVQKVMVQPINLIFRYLQNR---SRVQVWLFENVNLRIEGHIV 248
Query: 146 GFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
GFD+++N++L+D EY + R+ L +I+L G+NIT++
Sbjct: 249 GFDEYMNLVLDDAEEYYQKTKVRK--PLGRIMLKGDNITLI 287
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + + S + I +K D+E G L FD +N++L D E E +G +L +L
Sbjct: 11 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 67
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 68 IRGDNIV 74
>gi|449544087|gb|EMD35061.1| hypothetical protein CERSUDRAFT_85794 [Ceriporiopsis subvermispora
B]
Length = 93
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + RI + +E+ G L G+D +N++L++V E T + L ++L G +
Sbjct: 14 KYVNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVEEQLQTEGELKTRSLGLVVLRGPTV 73
Query: 184 TML 186
T+L
Sbjct: 74 TLL 76
>gi|402226213|gb|EJU06273.1| like-Sm ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 77
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + ++ + + G L G+D F+N++++D E ES G++ + Q+++ GN++
Sbjct: 11 KFMDKRLFVYIQGGRRVSGVLRGYDIFLNLVVDDAVE-ESGTSGKK--HIGQVVIRGNSV 67
Query: 184 TML 186
T +
Sbjct: 68 TSM 70
>gi|346971880|gb|EGY15332.1| hypothetical protein VDAG_06186 [Verticillium dahliae VdLs.17]
Length = 85
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L++ E EG ++ +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRIGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|315426676|dbj|BAJ48302.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315428002|dbj|BAJ49591.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485412|dbj|BAJ51066.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 77
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL + + I + + +KND GT+ D ++NMLLE V EY + ++L
Sbjct: 7 PLTTLMRQINKPVRVFLKNDARYEGTMVECDGYMNMLLEHVVEYMGDS---KTAGYPKVL 63
Query: 178 LNGNNI 183
+ GNNI
Sbjct: 64 IRGNNI 69
>gi|255943851|ref|XP_002562693.1| Pc20g01340 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587428|emb|CAP85463.1| Pc20g01340 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 100
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE---STPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E T E +R L QILL G+N++++
Sbjct: 49 IEGKIRGFDEFMNLVIDDAVEVRLATKTEEEKR-RPLGQILLKGDNVSLI 97
>gi|212541212|ref|XP_002150761.1| small nuclear ribonucleoprotein SmG, putative [Talaromyces
marneffei ATCC 18224]
gi|210068060|gb|EEA22152.1| small nuclear ribonucleoprotein SmG, putative [Talaromyces
marneffei ATCC 18224]
Length = 77
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + +++++G L G+D F+N++L+D E E G+ +L +++ GN++
Sbjct: 10 KYMEKRLFVQLNGNRKVIGILRGYDVFMNIVLDDAVE-EKADGGK--DRLGMVVIRGNSV 66
Query: 184 TMLGLHTHCG 193
ML G
Sbjct: 67 VMLEALERIG 76
>gi|157871658|ref|XP_001684378.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68127447|emb|CAJ05232.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 165
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 103 TMTAPSV-ATNPST------LLPLELVDKCIGSRIHIIM-KNDKEIVGTLNGFD-DFVNM 153
T APS A +PST +LP E++ +G R+ +++ K +E+ GTL D D +M
Sbjct: 14 TKAAPSEPAASPSTKSKSHMILPYEVLFNLVGRRVTVLLTKGSQELEGTLQAVDSDKGDM 73
Query: 154 LLEDVTEYESTPEGRRITKLDQILLNGNNITMLG 187
LL DV Y P + GN LG
Sbjct: 74 LLSDVVRYTWAPSRSSDEEETAAAAAGNRQCNLG 107
>gi|116780366|gb|ABK21652.1| unknown [Picea sitchensis]
Length = 79
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 126 IGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK-LDQILLNGNN 182
I +RI I + + D I G + GFD+++N++LED E R+ K L +ILL G+N
Sbjct: 14 IKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEISVK---RKTHKPLGRILLKGDN 70
Query: 183 ITML 186
IT++
Sbjct: 71 ITLM 74
>gi|156836424|ref|XP_001642276.1| hypothetical protein Kpol_218p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156112763|gb|EDO14418.1| hypothetical protein Kpol_218p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 42/115 (36%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
M+ PI C ++ Q +T LY +G RI
Sbjct: 8 MMPPINCIFNYLQQQTLVTFWLYEQ---------------------VGIRIR-------- 38
Query: 140 IVGTLNGFDDFVNMLLEDVTEY--------ESTPEGRRITKLDQILLNGNNITML 186
G + GFD+F+N++++D E E E R KL +ILL G+NIT+L
Sbjct: 39 --GKIAGFDEFMNVVIDDALEVPVDVKTGKEKLDEAR---KLGRILLKGDNITLL 88
>gi|380023740|ref|XP_003695670.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
florea]
Length = 129
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 65 SYFASDLINF-IWGLPMITPITCAYSRSHQYRTLTHLLYT--MTAPSVATNPSTLLPLEL 121
S++ D I F +W L + C + +T + Y V P L+ L
Sbjct: 4 SWYNYDAIFFGVWLLQSTSVKRCLLI----FEIITKMSYKGPQKVQKVMVQPINLIFRYL 59
Query: 122 VDKCIGSRIHI-IMKN-DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLN 179
++ SR+ + + +N + I G + GFD+++N++L+D EY + R+ L +I+L
Sbjct: 60 QNR---SRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYHLKTKNRK--PLGRIMLK 114
Query: 180 GNNITML 186
G+NIT++
Sbjct: 115 GDNITLI 121
>gi|388582146|gb|EIM22452.1| RNA cap binding protein [Wallemia sebi CBS 633.66]
Length = 146
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 125 CIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED-------VTEYESTPEGRRITKLDQIL 177
C+ ++ + +++ ++I+G L FD F N++L D + EY P G L
Sbjct: 16 CVDKKMLVALRDGRKIIGVLRSFDQFANLVLNDAVERIHALNEYADIPRG-------IFL 68
Query: 178 LNGNNITMLG 187
+ G N+ ++G
Sbjct: 69 IRGENVVLMG 78
>gi|255087196|ref|XP_002505521.1| predicted protein [Micromonas sp. RCC299]
gi|226520791|gb|ACO66779.1| predicted protein [Micromonas sp. RCC299]
Length = 95
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + R+++ ++ ++EI G L+ +D +NM+L DV E +T E
Sbjct: 11 PLDLIRLSLDERVYVKLRGEREIRGKLHAYDQHLNMILGDVEETITTVE 59
Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + R+++ ++ ++EI G L+ +D +NM+L DV +
Sbjct: 11 PLDLIRLSLDERVYVKLRGEREIRGKLHAYDQHLNMILGDVEET 54
>gi|15224217|ref|NP_179464.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|297836770|ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|4185140|gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|21592486|gb|AAM64436.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|26452632|dbj|BAC43399.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|28973515|gb|AAO64082.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297332107|gb|EFH62526.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|330251706|gb|AEC06800.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 88
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L++ E R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|336270436|ref|XP_003349977.1| hypothetical protein SMAC_00869 [Sordaria macrospora k-hell]
gi|380095367|emb|CCC06840.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 130
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL ++ G + + +KN + + G L D ++N+ L +V + ++PEG + +L +
Sbjct: 1 MLPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQ--TSPEGDKFARLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 132 IIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+ +K +KE+ GTL +D +N++L D E +S G+ KL I++ G+N+ ++
Sbjct: 19 VKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSDGSGK---KLGTIVIRGDNVILI 70
>gi|407924103|gb|EKG17161.1| hypothetical protein MPH_05615 [Macrophomina phaseolina MS6]
Length = 95
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 112 NPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY----ES 163
N L P+ + K + +R I + + I G + GFD+F+N++++D E +
Sbjct: 10 NKVLLPPINFIFKLLQTRATVSIWLFEQVGLRIEGKIRGFDEFMNLVIDDAIEVKLATKD 69
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+ E RR L QILL G+N++++
Sbjct: 70 SEEKRR--ALGQILLKGDNVSLI 90
>gi|414867201|tpg|DAA45758.1| TPA: small nuclear ribonucleoprotein G [Zea mays]
Length = 67
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
++ I M ++ ++GTL GFD F+N+++++ E G T + +++ GN++ M+
Sbjct: 4 KLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSVVMI 57
>gi|114051632|ref|NP_001040418.1| LSM Sm-like protein family member [Bombyx mori]
gi|95102812|gb|ABF51347.1| LSM Sm-like protein family member [Bombyx mori]
Length = 102
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
P +L+ + RI++ M+N++E+ G L+ +D +NM+L D E +T E
Sbjct: 16 PWDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVE 64
Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
P +L+ + RI++ M+N++E+ G L+ +D +NM+L D +
Sbjct: 16 PWDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEET 59
>gi|218883408|ref|YP_002427790.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
gi|218765024|gb|ACL10423.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
Length = 93
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+++ G + + +K E VGTL+ D +N++L D TEY +GR ++ +I+
Sbjct: 13 PLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEYGG--DGRPTSRYGKII 70
Query: 178 LNGNNITML 186
+ G+++ +
Sbjct: 71 IRGSHVEFI 79
>gi|330038624|ref|XP_003239651.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
gi|327206575|gb|AEA38753.1| small nuclear ribonucleoprotein SM D2 [Cryptomonas paramecium]
Length = 85
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 121 LVDKCIGSR-IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI----TKLDQ 175
LV I +R + I ++N++++VG + FD VN++LE+V E +T + I + +
Sbjct: 12 LVQAVISNRPVIIFVRNNRKLVGYIRAFDKHVNLILENVRELWTTCVEKNIFYHERYIAK 71
Query: 176 ILLNGNNITML 186
++L G++I +L
Sbjct: 72 MILRGDSIVLL 82
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
PL ++ C+ ++++ ++ +EIVG L+ +D+ N++L D E ST
Sbjct: 6 PLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVETIST 52
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL ++ C+ ++++ ++ +EIVG L+ +D+ N++L D +
Sbjct: 6 PLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVE 48
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + + S + I +K D+E G L FD +N++L D E E +G +L +L
Sbjct: 16 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 72
Query: 178 LNGNNITML 186
+ G+NI +
Sbjct: 73 IRGDNIVYI 81
>gi|395645347|ref|ZP_10433207.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM 4140]
gi|395442087|gb|EJG06844.1| Like-Sm ribonucleoprotein core [Methanofollis liminatans DSM 4140]
Length = 78
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 114 STLLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
S +LP++ V + SRI++ +K++ +++ G L D+ +N+ +E+ EY GR
Sbjct: 4 SIVLPVKKVYSLVDSRINVEIKDEGRKLQGRLVAVDEHLNLHMEETIEYTGEQRGR---S 60
Query: 173 LDQILLNGNNI 183
L +++ GNNI
Sbjct: 61 LGTVVIRGNNI 71
>gi|358058113|dbj|GAA96092.1| hypothetical protein E5Q_02753 [Mixia osmundae IAM 14324]
Length = 123
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LP L+ +G + + +KN + G L+G D+F+N+ L++V Y+++ G + KL +
Sbjct: 1 MLPDSLLQAALGKPMLVELKNGETFNGHLSGADNFMNLTLKEV--YQTSANGDQFWKLPE 58
Query: 176 ILLNGNNI 183
L G+ I
Sbjct: 59 CYLKGHMI 66
>gi|342905932|gb|AEL79249.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
gi|342905938|gb|AEL79252.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
Length = 97
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D EY + RR L +I++ G+NIT++
Sbjct: 41 RIEGHIVGFDEYMNLVLDDAEEYNIKTKNRR--PLGRIMMKGDNITLI 86
>gi|261198058|ref|XP_002625431.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239595394|gb|EEQ77975.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239607755|gb|EEQ84742.1| predicted protein [Ajellomyces dermatitidis ER-3]
gi|327354601|gb|EGE83458.1| small nuclear ribonucleoprotein SmG [Ajellomyces dermatitidis ATCC
18188]
Length = 78
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ + + +++++G L G+D F+N++L++ E ++ E +L +++ GN
Sbjct: 8 LKKYMEKRLFVQLNGNRKVIGILRGYDVFMNIVLDEAVEEKNGGEK---VRLGMVVIRGN 64
Query: 182 NITMLGLHTHCGMR 195
++ ML G R
Sbjct: 65 SVVMLEALERIGDR 78
>gi|85107173|ref|XP_962325.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
gi|28923928|gb|EAA33089.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
Length = 130
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL ++ G + + +KN + + G L D ++N+ L +V + ++PEG + +L +
Sbjct: 1 MLPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQ--TSPEGDKFVRLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|225455956|ref|XP_002278114.1| PREDICTED: small nuclear ribonucleoprotein E [Vitis vinifera]
gi|297734216|emb|CBI15463.3| unnamed protein product [Vitis vinifera]
Length = 88
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 101 LYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDV 158
+ T + T P L+ L K +RI I + + D I G + GFD+++N++L+D
Sbjct: 1 MATTKVQRIMTQPINLIFRFLQSK---ARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDA 57
Query: 159 TEYESTPEGRRITKLDQILLNGNNITML 186
E ++ L +ILL G+NIT++
Sbjct: 58 EEVNVKKNTKKT--LGRILLKGDNITLM 83
>gi|378730773|gb|EHY57232.1| small nuclear ribonucleoprotein [Exophiala dermatitidis NIH/UT8656]
Length = 138
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
K + +I + +EIVGTL G+D +N++L+DV E EG T+
Sbjct: 56 KYVDKQITVKFNGGREIVGTLKGYDQLMNLVLDDVKETMRDDEGNETTR 104
>gi|281353334|gb|EFB28918.1| hypothetical protein PANDA_013986 [Ailuropoda melanoleuca]
Length = 86
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G ++ FD++VN++L+D E + R+ +L QI+L G+N T+L
Sbjct: 39 RIEGCIHSFDEYVNLVLDDAKEIHYKTKSRK--QLGQIMLKGDNTTLL 84
>gi|221119660|ref|XP_002154306.1| PREDICTED: small nuclear ribonucleoprotein E-like [Hydra
magnipapillata]
Length = 87
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +R I + +N+ I G + GFD+++N++L+D E + ++ +L
Sbjct: 12 PINLIFRYLQNRARIQIWLYEQNNLRIEGHIIGFDEYMNLVLDDAQEVHVKNKTKK--QL 69
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 70 GRILLKGDNITLI 82
>gi|168027770|ref|XP_001766402.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168048491|ref|XP_001776700.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671992|gb|EDQ58536.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682311|gb|EDQ68730.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
+ T P L+ L K SRI I + + D I G + GFD+++N++L++ E
Sbjct: 5 VQRIMTQPINLIFRFLQSK---SRIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSL 61
Query: 164 TPEGRRITKLDQILLNGNNITML 186
+ R+ L +ILL G+NIT++
Sbjct: 62 KKKTRK--PLGRILLKGDNITLM 82
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + + S + I +K D+E G L FD +N++L D E E +G +L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 70
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 71 IRGDNIV 77
>gi|146091840|ref|XP_001470136.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398018037|ref|XP_003862205.1| hypothetical protein, conserved [Leishmania donovani]
gi|134084930|emb|CAM69328.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322500434|emb|CBZ35511.1| hypothetical protein, conserved [Leishmania donovani]
Length = 165
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 103 TMTAPS-VATNPST------LLPLELVDKCIGSRIHIIM-KNDKEIVGTLNGFD-DFVNM 153
T TAPS A +PS +LP E++ +G R+ +++ K +E+ GTL D D +M
Sbjct: 14 TKTAPSGPAVSPSAKNKSHMILPYEVLFNLVGRRVTVLLTKGSQELEGTLQSVDSDKGDM 73
Query: 154 LLEDVTEYESTPEGRRITKLDQILLNGNNITMLG 187
LL DV Y P + GN LG
Sbjct: 74 LLSDVVRYTWAPSRSSDEEETAAAAAGNGQCTLG 107
>gi|17556060|ref|NP_499620.1| Protein SNR-6 [Caenorhabditis elegans]
gi|29428070|sp|Q9XTU6.1|RUXE_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|3979991|emb|CAB11551.1| Protein SNR-6 [Caenorhabditis elegans]
Length = 90
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 112 NPSTLLPLELVDKCIG--SRIHIIMKND--KEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
N + P+ L+ + + +R+ I + D + G + GFD+F+N++ ++ E +G
Sbjct: 7 NKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKG 66
Query: 168 RRITKLDQILLNGNNITML 186
R K+ +ILL G+NIT++
Sbjct: 67 R--NKIGRILLKGDNITLI 83
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + + S + I +K D+E G L FD +N++L D E E RR L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRR---LGTVL 70
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 71 IRGDNIV 77
>gi|412985477|emb|CCO18923.1| small nuclear ribonucleoprotein E [Bathycoccus prasinos]
Length = 91
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 128 SRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
SR+ I + N + G + GFD+++N++L+D E + ++ T + ++LL G+++
Sbjct: 24 SRVQIWLYEHAANGDVLEGQIVGFDEYMNLVLDDCEEVKRVGGAKQRTSVGRVLLKGDSV 83
Query: 184 TML 186
TM+
Sbjct: 84 TMM 86
>gi|336470904|gb|EGO59065.1| hypothetical protein NEUTE1DRAFT_116371 [Neurospora tetrasperma
FGSC 2508]
gi|350291974|gb|EGZ73169.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 130
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL ++ G + + +KN + + G L D ++N+ L +V + ++PEG + +L +
Sbjct: 1 MLPLGILTAAQGHPMLVELKNGETLNGHLIQCDTWMNLTLREVVQ--TSPEGDKFVRLRE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVKGNNIKYL 69
>gi|297527121|ref|YP_003669145.1| hypothetical protein Shell_1145 [Staphylothermus hellenicus DSM
12710]
gi|297256037|gb|ADI32246.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 95
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
TM+ P P T PL+ + I + + +K+ E +GTL+ D +N++L + EY
Sbjct: 4 TMSVPK----PKTATPLKYLKSAINQIVLVKIKDGHEYIGTLDMVDHTMNVVLSNCQEYG 59
Query: 163 STPEGRRITKLDQILLNGNNITMLGLH 189
G+ + ++L+ G++I + ++
Sbjct: 60 D--NGKPTARYGKVLIRGSHIVFISIN 84
>gi|302404042|ref|XP_002999859.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261361361|gb|EEY23789.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 85
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L++ E EG ++ +++ GN++
Sbjct: 10 KYLDKRLFVQLNGGRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRIGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|70986850|ref|XP_748912.1| small nuclear ribonucleoprotein SmE [Aspergillus fumigatus Af293]
gi|66846542|gb|EAL86874.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus Af293]
gi|159123319|gb|EDP48439.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus
fumigatus A1163]
Length = 95
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE---STPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E + T E +R L QILL G+N++++
Sbjct: 43 IEGKIRGFDEFMNLVIDDAVEVKMATKTDEEKR-RPLGQILLKGDNVSLI 91
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 118 PLELVDKCIGSRIHII--MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK--- 172
P+ L++ + S++ +I ++N+ +I+ + FD NM+LE+V E + +G++I
Sbjct: 30 PMSLINDSVISKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKQIINRER 89
Query: 173 -LDQILLNGNNITML 186
+ ++ L G++I ++
Sbjct: 90 FISKLFLRGDSIIVI 104
>gi|85090916|ref|XP_958647.1| hypothetical protein NCU09880 [Neurospora crassa OR74A]
gi|336273960|ref|XP_003351734.1| hypothetical protein SMAC_00278 [Sordaria macrospora k-hell]
gi|28920025|gb|EAA29411.1| hypothetical protein NCU09880 [Neurospora crassa OR74A]
gi|336463997|gb|EGO52237.1| hypothetical protein NEUTE1DRAFT_90311 [Neurospora tetrasperma FGSC
2508]
gi|350296078|gb|EGZ77055.1| LSM-domain-containing protein [Neurospora tetrasperma FGSC 2509]
gi|380096013|emb|CCC06060.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 85
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E + E KL + + GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDGGE---KVKLGMVTIRGNSV 66
Query: 184 TML 186
M+
Sbjct: 67 VMM 69
>gi|354468865|ref|XP_003496871.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|344247265|gb|EGW03369.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
Length = 92
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + G D+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMWIEGCIIGLDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L QI+L G+NIT L
Sbjct: 66 SKTKSRK--QLGQIMLKGDNITQL 87
>gi|357159383|ref|XP_003578429.1| PREDICTED: probable small nuclear ribonucleoprotein G-like isoform
1 [Brachypodium distachyon]
gi|357159386|ref|XP_003578430.1| PREDICTED: probable small nuclear ribonucleoprotein G-like isoform
2 [Brachypodium distachyon]
Length = 81
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + ++ I M ++ ++GTL GFD F+N+++++ E G T + +++ GN++
Sbjct: 12 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNEKTDIGMVVVRGNSV 67
Query: 184 TML 186
M+
Sbjct: 68 VMI 70
>gi|320591988|gb|EFX04427.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 86
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L++ E +G K+ +++ GN+I
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKDGGEKVKIGMVVIRGNSI 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|134083643|emb|CAK47035.1| unnamed protein product [Aspergillus niger]
Length = 105
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
ST + + + + R+ + +++++G L G+D F+N++L++ +E G ++
Sbjct: 9 KKSTEANIAVFQQYMEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEA--FEEKQGGEKVA 66
Query: 172 KLDQILLNGNNITMLGLHTHC 192
+ I++ GN++ ML + C
Sbjct: 67 -IGMIVIRGNSVVMLEVSITC 86
>gi|254582138|ref|XP_002497054.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
gi|238939946|emb|CAR28121.1| ZYRO0D14366p [Zygosaccharomyces rouxii]
Length = 110
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 118 PLELVDKCIGSR--IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK--- 172
PL L++ + ++ + I ++N+ +I+ + FD NM+LE+V E + +G+R+
Sbjct: 30 PLSLINDSVTTKNPVIISLRNNHKIIARVKAFDRHCNMILENVKELWTEKKGKRVVNKER 89
Query: 173 -LDQILLNGNNITML 186
+ ++ L G+++ ++
Sbjct: 90 FISKLFLRGDSVIVI 104
>gi|145535682|ref|XP_001453574.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421296|emb|CAK86177.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 120 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLN 179
+ + G +++ + N E +G L D +N++LE EY E + I K QILL
Sbjct: 10 DFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEY---LEQKLINKYGQILLR 66
Query: 180 GNNI 183
GNN+
Sbjct: 67 GNNV 70
>gi|313586493|gb|ADR71257.1| U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
Length = 98
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 114 STLLPLE-LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRIT 171
ST L LE LVD+ I +I + + IVG L GFD N++L++ E ST EG +
Sbjct: 2 STGLGLESLVDQTIS----VITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQL 57
Query: 172 KLDQILLNGNNITMLG 187
L ++ G+NI+++G
Sbjct: 58 VLGLYIIRGDNISIVG 73
>gi|268536916|ref|XP_002633593.1| C. briggsae CBR-LSM-8 protein [Caenorhabditis briggsae]
Length = 98
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE--YESTPEGRRITKLDQILLNGNNITMLG 187
++++ + + IVG L GFD +N+++ED E Y T +G IT L ++ G N+ ++G
Sbjct: 13 VNVVTGDGRVIVGLLKGFDQLINLVIEDAHERCYSET-DGVLITPLGLYIIRGENVAIIG 71
>gi|367005821|ref|XP_003687642.1| hypothetical protein TPHA_0K00740 [Tetrapisispora phaffii CBS 4417]
gi|357525947|emb|CCE65208.1| hypothetical protein TPHA_0K00740 [Tetrapisispora phaffii CBS 4417]
Length = 197
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP--EGRRITK- 172
+LPL L+ G ++ I +KN I GTL D+++N+ L +V + +++ E ++ K
Sbjct: 1 MLPLYLLTNTKGQQMFIELKNGTTIQGTLTNVDNWMNLTLSNVVQVDNSEPNEDGKVEKI 60
Query: 173 -LDQILLNGNNITMLGLH 189
L+QI L G +I + L
Sbjct: 61 TLEQIYLRGTHIKYINLQ 78
>gi|341882643|gb|EGT38578.1| hypothetical protein CAEBREN_11633 [Caenorhabditis brenneri]
gi|341899974|gb|EGT55909.1| hypothetical protein CAEBREN_04439 [Caenorhabditis brenneri]
Length = 98
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNGNNITMLG 187
++++ + + IVG L GFD +N+++ED E S EG T L ++ G N+ ++G
Sbjct: 13 VNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAIIG 71
>gi|167379643|ref|XP_001735222.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902891|gb|EDR28600.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 84
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLG 187
I GTL+GFD ++N++L D E RR K+ ILL G NI+++
Sbjct: 33 RIEGTLSGFDQYINLVLTDTEEVYLKTNTRR--KIGTILLKGENISVIS 79
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + + S + I +K D+E G L FD +N++L D E E RR L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRR---LGTVL 70
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 71 IRGDNIV 77
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILL 178
I R+ II+++ + +GT FD +N++L D E+ PE L +LL
Sbjct: 13 INYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLL 72
Query: 179 NGNNITML 186
G NI L
Sbjct: 73 RGENIVSL 80
>gi|145508998|ref|XP_001440443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407660|emb|CAK73046.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 120 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLN 179
+ + G +++ + N E +G L D +N++LE EY E + I K QILL
Sbjct: 10 DFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEY---LEQKLINKYGQILLR 66
Query: 180 GNNI 183
GNN+
Sbjct: 67 GNNV 70
>gi|307193681|gb|EFN76364.1| Small nuclear ribonucleoprotein-associated protein B [Harpegnathos
saltator]
Length = 208
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILLNGN 181
R+ II+++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 8 RVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGE 67
Query: 182 NITML 186
NI L
Sbjct: 68 NIVSL 72
>gi|238482745|ref|XP_002372611.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus flavus
NRRL3357]
gi|220700661|gb|EED56999.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus flavus
NRRL3357]
Length = 95
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE---STPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E T E +R L QILL G+N++++
Sbjct: 43 IEGKIRGFDEFMNLVVDDAVEVRLATKTEEEKR-RPLGQILLKGDNVSLI 91
>gi|366989241|ref|XP_003674388.1| hypothetical protein NCAS_0A14510 [Naumovozyma castellii CBS 4309]
gi|342300251|emb|CCC68009.1| hypothetical protein NCAS_0A14510 [Naumovozyma castellii CBS 4309]
Length = 182
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES-----TPEGRRI 170
+LPL L+ G ++ + +KN + + G L D+++N+ L +V+EY+S TP+ +
Sbjct: 1 MLPLYLLTNAKGQQMRVELKNGEIVEGKLTNVDNWMNLTLSNVSEYKSSDTIATPQ-TEV 59
Query: 171 TKLDQILLNGNNITMLGLH 189
K +I + G I + L
Sbjct: 60 VKSTEIYVRGTFIKYINLQ 78
>gi|71015586|ref|XP_758826.1| hypothetical protein UM02679.1 [Ustilago maydis 521]
gi|46098616|gb|EAK83849.1| hypothetical protein UM02679.1 [Ustilago maydis 521]
Length = 136
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 137 DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
D I G + GFD+F+N+ L D E + + +R+ +L +ILL G+NI
Sbjct: 34 DFRIEGKIIGFDEFMNVTLADAEEVWTKKDNKRV-ELGRILLKGDNI 79
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
+L+ + R+ I ++ D+E+ GTL+ +D +NM+L DVTE
Sbjct: 1 FDLIRLSLSERVLIKLRGDREVTGTLHAYDGHMNMVLSDVTE 42
Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+L+ + R+ I ++ D+E+ GTL+ +D +NM+L DVT+
Sbjct: 1 FDLIRLSLSERVLIKLRGDREVTGTLHAYDGHMNMVLSDVTE 42
>gi|307105606|gb|EFN53854.1| hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis]
Length = 86
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SR I + ND I G + GFD+++N++L++ E + R+ L
Sbjct: 12 PINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKRKTRK--AL 69
Query: 174 DQILLNGNNITML 186
+ILL G+ IT++
Sbjct: 70 GRILLKGDTITLM 82
>gi|118781504|ref|XP_311506.3| AGAP010440-PA [Anopheles gambiae str. PEST]
gi|116129981|gb|EAA07131.3| AGAP010440-PA [Anopheles gambiae str. PEST]
Length = 90
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIG--SRIHIIMKNDK--EIVGTLNGFDDFVNMLLEDVT 159
M+ + P+ L+ + + SR+ + + + I G + GFD+++N++L++
Sbjct: 1 MSFKGSKVQKVMVQPINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAE 60
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
E+ + RR +L +I+L G+NIT++
Sbjct: 61 EFNIKKQTRR--QLGRIMLKGDNITLI 85
>gi|67478492|ref|XP_654638.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56471705|gb|EAL49252.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407040392|gb|EKE40106.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449708080|gb|EMD47607.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 89
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLG 187
I GTL+GFD ++N++L D E RR K+ ILL G NI+++
Sbjct: 38 RIEGTLSGFDQYINLVLTDTEEVYLKTNTRR--KIGTILLKGENISVIS 84
>gi|429850739|gb|ELA25982.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 96
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E ++ PE R L QILL G+N++++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAVEVKQVTKTNPEESR-RPLGQILLKGDNVSLI 91
>gi|76802788|ref|YP_330883.1| snRNP-like protein [Natronomonas pharaonis DSM 2160]
gi|76558653|emb|CAI50245.1| RNA-binding protein Lsm [Natronomonas pharaonis DSM 2160]
Length = 61
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 30/40 (75%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 54
PL+++++ +G+ +H+ +K + GTL+G+D +N++LE+
Sbjct: 5 PLDVLEETLGAEVHVTLKGGETYEGTLSGYDQHMNLVLEE 44
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 30/40 (75%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157
PL+++++ +G+ +H+ +K + GTL+G+D +N++LE+
Sbjct: 5 PLDVLEETLGAEVHVTLKGGETYEGTLSGYDQHMNLVLEE 44
>gi|209877859|ref|XP_002140371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209555977|gb|EEA06022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL ++ I + +KN + G L G D F+N++L +V ++ +G+R ++ +
Sbjct: 2 VLPLSVIRSANKHSIMVELKNGETYSGMLIGVDGFMNLVLNNVI--STSKDGQRFFRMSE 59
Query: 176 ILLNGNNITMLGLH 189
L GNNI + ++
Sbjct: 60 CYLRGNNIKYIRMN 73
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +N++L D E +T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNIVLGDAEETVTTVE 66
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + ++++ M+N++E+ G L+ FD +N++L D +
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNIVLGDAEE 60
>gi|449439529|ref|XP_004137538.1| PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary
subunit-like [Cucumis sativus]
gi|449514856|ref|XP_004164499.1| PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary
subunit-like [Cucumis sativus]
Length = 98
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQILLNG 180
+D + I +I + + IVG L GFD N++L++ E ST EG + L ++ G
Sbjct: 7 LDSLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRG 66
Query: 181 NNITMLG 187
+NI+++G
Sbjct: 67 DNISIVG 73
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein With
Two Heptamers In The Asymmetric Unit
Length = 85
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + + S + I +K D+E G L FD +N++L D E E RR L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRR---LGTVL 70
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 71 IRGDNIV 77
>gi|115443949|ref|NP_001045754.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|41053075|dbj|BAD08019.1| putative small nuclear ribonucleoprotein polypeptide E [Oryza
sativa Japonica Group]
gi|113535285|dbj|BAF07668.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|215686543|dbj|BAG88796.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189970|gb|EEC72397.1| hypothetical protein OsI_05681 [Oryza sativa Indica Group]
gi|222622094|gb|EEE56226.1| hypothetical protein OsJ_05214 [Oryza sativa Japonica Group]
Length = 88
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L++ E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEINIKKDTRK--SL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>gi|315046146|ref|XP_003172448.1| small nuclear ribonucleoprotein SmG [Arthroderma gypseum CBS
118893]
gi|327305055|ref|XP_003237219.1| small nuclear ribonucleoprotein SmG [Trichophyton rubrum CBS
118892]
gi|311342834|gb|EFR02037.1| small nuclear ribonucleoprotein SmG [Arthroderma gypseum CBS
118893]
gi|326460217|gb|EGD85670.1| small nuclear ribonucleoprotein SmG [Trichophyton rubrum CBS
118892]
gi|326472004|gb|EGD96013.1| small nuclear ribonucleoprotein SmG [Trichophyton tonsurans CBS
112818]
gi|326477131|gb|EGE01141.1| small nuclear ribonucleoprotein SmG [Trichophyton equinum CBS
127.97]
Length = 78
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + +++++G L G+D F+N++L+D E ++ E L +++ GN++
Sbjct: 10 KYMEKRLFVQLNGNRKVIGVLRGYDVFMNIVLDDAVEEKNGGEK---VPLGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|406865394|gb|EKD18436.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 83
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L+D E + E +L +++ GN++
Sbjct: 10 KYLDKRLFVQLNGTRKVIGILRGYDVFLNIVLDDAVEEKDGGEK---VRLGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|46111729|ref|XP_382922.1| hypothetical protein FG02746.1 [Gibberella zeae PH-1]
gi|408389795|gb|EKJ69221.1| hypothetical protein FPSE_10604 [Fusarium pseudograminearum CS3096]
Length = 96
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYEST-----PEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E + E RR L QILL G+N++++
Sbjct: 41 RIEGKIRGFDEFMNLVIDDAVEVKQITKTNDKESRR--PLGQILLKGDNVSLI 91
>gi|378756213|gb|EHY66238.1| hypothetical protein NERG_00934 [Nematocida sp. 1 ERTm2]
Length = 70
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+ P+E ++K G R+ ++++ + GT +D VN+L ED++ + + K+ +
Sbjct: 1 MQPVEWIEKNKGERVRVVLRTGRVYSGTFISYDSNVNILFEDLSCWNTKE------KIGK 54
Query: 176 ILLNGNNITML 186
+LNG + +
Sbjct: 55 SILNGTTVAYM 65
>gi|353237452|emb|CCA69424.1| related to LSM1-Sm-like (Lsm) protein [Piriformospora indica DSM
11827]
Length = 136
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 18 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFAS 69
LVD C+ ++ +I+++ ++++G L +D F N++LE + HL YFA
Sbjct: 13 LVD-CVDKKVLVILRDGRKLIGVLRSYDQFANLVLEGTIE--RKHLGPYFAE 61
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 121 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNG 180
LVD C+ ++ +I+++ ++++G L +D F N++LE E + + +++ G
Sbjct: 13 LVD-CVDKKVLVILRDGRKLIGVLRSYDQFANLVLEGTIERKHLGPYFAELPVGVMVIRG 71
Query: 181 NNITMLG 187
N+ +LG
Sbjct: 72 ENVVLLG 78
>gi|354459631|pdb|3SWN|C Chain C, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459634|pdb|3SWN|F Chain F, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459637|pdb|3SWN|O Chain O, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459640|pdb|3SWN|R Chain R, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
Length = 117
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT----KLDQILLNGNNI 183
RI ++I G L GFD +N++L+DV E PE ++T KL +++ G +
Sbjct: 38 QRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTL 97
Query: 184 TML 186
++
Sbjct: 98 VLI 100
>gi|115465821|ref|NP_001056510.1| Os05g0594900 [Oryza sativa Japonica Group]
gi|55733874|gb|AAV59381.1| unknown protein [Oryza sativa Japonica Group]
gi|113580061|dbj|BAF18424.1| Os05g0594900 [Oryza sativa Japonica Group]
Length = 99
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 121 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQILLN 179
LVD+ I +I + + IVGTL GFD N++L++ E ST EG + L ++
Sbjct: 11 LVDQIIS----VITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQLVLGLYIIR 66
Query: 180 GNNITMLG 187
G+NI+++G
Sbjct: 67 GDNISVVG 74
>gi|268571317|ref|XP_002641005.1| C. briggsae CBR-SNR-6 protein [Caenorhabditis briggsae]
gi|190360255|sp|A8XDT0.1|RUXE_CAEBR RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
Length = 90
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIMKND--KEIVGTLNGFDDFVNMLLEDVTEYEST 164
V P L+ L ++ +R+ I + D + G + GFD+F+N++ ++ E
Sbjct: 7 QKVMVQPVNLIFRYLQNR---TRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMK 63
Query: 165 PEGRRITKLDQILLNGNNITML 186
+GR K+ +ILL G+NIT++
Sbjct: 64 TKGR--NKIGRILLKGDNITLI 83
>gi|393239356|gb|EJD46888.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 136
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ + + +KN + G L D+F+N+ L +V Y+++ EG R KL +
Sbjct: 1 MLPLSLLNAAQSKPMLVELKNGETFNGHLVNCDNFMNITLREV--YQTSAEGDRFWKLKE 58
Query: 176 ILLNGNNITML 186
+ G+ I L
Sbjct: 59 CYIRGSTIKYL 69
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILLNGN 181
R+ II+++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 8 RVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGE 67
Query: 182 NITML 186
NI L
Sbjct: 68 NIVSL 72
>gi|268637717|ref|XP_002649120.1| small nuclear ribonucleoprotein E [Dictyostelium discoideum AX4]
gi|256012871|gb|EEU04068.1| small nuclear ribonucleoprotein E [Dictyostelium discoideum AX4]
Length = 92
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A SV P TL+ + + + +I + D I G + G D+++N++L++ +E
Sbjct: 6 AKSVMIKPITLI-FKFLTQKTEVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASELSIKK 64
Query: 166 EGRRITKLDQILLNGNNITMLGLHTHCGMRPYI 198
+ ++ L QILL G+NI+++ RP +
Sbjct: 65 KTKK--PLGQILLKGDNISLV---LEAATRPIV 92
>gi|397521006|ref|XP_003830597.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 116 LLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT 171
+LP+ L+ + + +R + + + + I G + GFD ++N++L+D E S + R+
Sbjct: 15 VLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKTKSRK-- 72
Query: 172 KLDQILLNGNNITML 186
+L +I+L G+NI +L
Sbjct: 73 QLGRIILKGDNIPLL 87
>gi|323448261|gb|EGB04162.1| hypothetical protein AURANDRAFT_32975 [Aureococcus anophagefferens]
Length = 77
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + + I M ++ + G L G+D F+N++LED TE S +G + T + ++L GN I
Sbjct: 11 KYMDKALTIKMNGNRRVSGVLRGYDQFLNLVLEDATEDGS--DGAK-TPIGMVVLRGNGI 67
Query: 184 TML 186
L
Sbjct: 68 IQL 70
>gi|388514443|gb|AFK45283.1| unknown [Lotus japonicus]
Length = 98
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ + +I +I + + IVG L GFD N++L++ E ST EG + L ++ G
Sbjct: 7 LESLVDQQISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
Query: 181 NNITMLG 187
+NI+++G
Sbjct: 67 DNISVVG 73
>gi|449300793|gb|EMC96805.1| hypothetical protein BAUCODRAFT_122769 [Baudoinia compniacensis
UAMH 10762]
Length = 125
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D ++N+ L++V +++PEG + +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLVNCDTYMNLTLKEVV--QTSPEGDKFFRLPE 58
Query: 176 ILLNGNNITML 186
+ GNNI L
Sbjct: 59 CYVRGNNIKYL 69
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
P +L+ + R+ + ++ D+E+VG L+ +D +N++L DV E
Sbjct: 11 PFDLIRLSLSERVFVKLRGDREVVGILHAYDGHMNLILSDVEE 53
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
P +L+ + R+ + ++ D+E+VG L+ +D +N++L DV +
Sbjct: 11 PFDLIRLSLSERVFVKLRGDREVVGILHAYDGHMNLILSDVEET 54
>gi|190346690|gb|EDK38837.2| hypothetical protein PGUG_02935 [Meyerozyma guilliermondii ATCC
6260]
Length = 84
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 114 STLLPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRR 169
S L P+ ++ K + ++ + + + +I G + GFD+F+N++++D E E
Sbjct: 7 SMLPPINVIFKFLQQQVPVTIWLYEQTQSKIQGRIRGFDEFMNIVIDDAVEILKDSE--- 63
Query: 170 ITKLDQILLNGNNITMLG 187
L +ILL G+NIT++
Sbjct: 64 -VPLGRILLKGDNITLIS 80
>gi|119483034|ref|XP_001261545.1| LSM domain protein [Neosartorya fischeri NRRL 181]
gi|119409700|gb|EAW19648.1| LSM domain protein [Neosartorya fischeri NRRL 181]
Length = 95
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYE---STPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E T E +R L QILL G+N++++
Sbjct: 42 RIEGKIRGFDEFMNLVIDDAVEVRMATKTDEEKR-RPLGQILLKGDNVSLI 91
>gi|340054745|emb|CCC49047.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma vivax
Y486]
Length = 111
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
SVA P +LL + D G+R+ I + +K +V T+ FD N++L D E
Sbjct: 28 SVAAGPFSLLESAVRD---GTRVFIQSRFNKSLVATVVAFDKHFNLVLRDAVELTMVKNE 84
Query: 168 RRITKLDQILLNGNNITML 186
+R + + L G+++ +
Sbjct: 85 QRERSIRNMFLRGSSVVFV 103
>gi|255565755|ref|XP_002523867.1| lsm1, putative [Ricinus communis]
gi|223536955|gb|EEF38593.1| lsm1, putative [Ricinus communis]
Length = 98
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQILLNG 180
++ + I +I + + IVG L GFD N++L++ E ST EG ++ L ++ G
Sbjct: 7 LESLVDQNISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQLHVLGLYIIRG 66
Query: 181 NNITMLG 187
+NI+++G
Sbjct: 67 DNISIVG 73
>gi|392579756|gb|EIW72883.1| hypothetical protein TREMEDRAFT_24586, partial [Tremella
mesenterica DSM 1558]
Length = 104
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
LPL L++ G + + +KN G L D+F+N+ L +V Y+++ +G R K+ ++
Sbjct: 1 LPLTLLNAAQGKPMLVELKNGVTFNGHLVECDNFMNVTLREV--YQTSADGERFWKMKEV 58
Query: 177 LLNGN 181
+ GN
Sbjct: 59 FIKGN 63
>gi|343429490|emb|CBQ73063.1| probable small nuclear ribonucleoprotein E [Sporisorium reilianum
SRZ2]
Length = 85
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 137 DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
D I G + GFD+F+N+ L D E + + R +L +ILL G+NIT++
Sbjct: 34 DFRIEGKIIGFDEFMNVTLADAEEVWTKKDKR--VELGRILLKGDNITLI 81
>gi|308470011|ref|XP_003097241.1| CRE-SNR-6 protein [Caenorhabditis remanei]
gi|308240461|gb|EFO84413.1| CRE-SNR-6 protein [Caenorhabditis remanei]
Length = 90
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIMKND--KEIVGTLNGFDDFVNMLLEDVTEYEST 164
V P L+ L ++ +R+ I + D + G + GFD+F+N++ ++ E
Sbjct: 7 QKVMVQPVNLIFRYLQNR---TRVQIWLYEDITHRLEGYIIGFDEFMNVVFDEAEEVNMK 63
Query: 165 PEGRRITKLDQILLNGNNITML 186
+GR K+ +ILL G+NIT++
Sbjct: 64 TKGR--NKIGRILLKGDNITLI 83
>gi|19075840|ref|NP_588340.1| U6 snRNP-associated protein Lsm7 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626865|sp|O74499.1|LSM7_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm7
gi|3581912|emb|CAA20851.1| U6 snRNP-associated protein Lsm7 (predicted) [Schizosaccharomyces
pombe]
Length = 113
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT----KLDQILLNGNNI 183
RI ++I G L GFD +N++L+DV E PE ++T KL +++ G +
Sbjct: 34 QRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTL 93
Query: 184 TML 186
++
Sbjct: 94 VLI 96
>gi|443894424|dbj|GAC71772.1| small nuclear ribonucleoprotein E [Pseudozyma antarctica T-34]
Length = 86
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 137 DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
D I G + GFD+F+N+ L D E + +R+ +L +ILL G+NIT++
Sbjct: 34 DFRIEGKIIGFDEFMNVTLADAEEVWLKKDHKRV-ELGRILLKGDNITLI 82
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST-PEGRRITKLDQ------ILL 178
I RI I +++ + +GT FD +N++L D E+ T P+ + + D+ +LL
Sbjct: 5 INYRIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRTKPKNSKEAERDEKRSLGFVLL 64
Query: 179 NGNNITML 186
G NI L
Sbjct: 65 RGQNIVSL 72
>gi|46107748|ref|XP_380933.1| hypothetical protein FG00757.1 [Gibberella zeae PH-1]
gi|408399451|gb|EKJ78553.1| hypothetical protein FPSE_01277 [Fusarium pseudograminearum CS3096]
Length = 84
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L++ E + E RI +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVEEKDNGEKVRIG---MVVIRGNSV 66
Query: 184 TMLGLHTHCG 193
ML G
Sbjct: 67 VMLEALERIG 76
>gi|52346208|ref|NP_001005147.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|50603823|gb|AAH77697.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
gi|89268183|emb|CAJ83657.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|166796482|gb|AAI59376.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
Length = 92
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
+ R+ +L +I+L G+NIT+L
Sbjct: 66 LKTKSRK--QLGRIMLKGDNITLL 87
>gi|384494127|gb|EIE84618.1| hypothetical protein RO3G_09328 [Rhizopus delemar RA 99-880]
Length = 125
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE------- 160
+A P L+D I ++ +++++ ++++G L FD F N++L+D E
Sbjct: 2 EIANGPLFTTSTGLID-SIDKKLMVVLRDGRKLIGILRSFDQFANLVLQDTIERIYVRGC 60
Query: 161 YESTPEGRRITKLDQILLNGNNITMLG 187
Y P G L+ G N+ +LG
Sbjct: 61 YGDIPRG-------VFLIRGENVVLLG 80
>gi|308477573|ref|XP_003101000.1| CRE-LSM-8 protein [Caenorhabditis remanei]
gi|308264344|gb|EFP08297.1| CRE-LSM-8 protein [Caenorhabditis remanei]
Length = 98
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNGNNITMLG 187
++++ + + IVG L GFD +N+++ED E S EG T L ++ G N+ ++G
Sbjct: 13 VNVVTGDGRIIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRGENVAIIG 71
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+++++ + S + + +K +E GTL+G+D +N++L D E ++ G + K+ ++
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQN---GEVVRKVGSVV 61
Query: 178 LNGNNITML 186
+ G+ + +
Sbjct: 62 IRGDTVVFV 70
>gi|452822994|gb|EME30008.1| small nuclear ribonucleoprotein E [Galdieria sulphuraria]
Length = 85
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 113 PSTLL--PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PS ++ P+ L+ + + +R +++ + + I G ++GFD+++N++L++ E+
Sbjct: 3 PSKIMTQPINLIFRFLQNRTKVVIWLYEETNFRIEGRISGFDEYMNLVLDEAVEWNVKKN 62
Query: 167 GRRITKLDQILLNGNNITML 186
R L +ILL G+ IT++
Sbjct: 63 TR--INLGRILLKGDTITLI 80
>gi|429964806|gb|ELA46804.1| hypothetical protein VCUG_01704 [Vavraia culicis 'floridensis']
Length = 81
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P + + IG RI I +K + + G L+GFDD N+ + V+E+ + + + KL +++
Sbjct: 9 PKQFLKARIGKRIRISLKWNVDYEGILDGFDDNFNIEVSSVSEF---VDSKMVGKLKRMV 65
Query: 178 LNGNNITMLGLHTHCG 193
+ NNI + CG
Sbjct: 66 IRCNNIR--SMEDVCG 79
>gi|317139460|ref|XP_003189167.1| small nuclear ribonucleoprotein E [Aspergillus oryzae RIB40]
Length = 95
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E ++ E RR L QILL G+N++++
Sbjct: 42 RIEGKIRGFDEFMNLVVDDAVEVRLATKTGEEKRR--PLGQILLKGDNVSLI 91
>gi|426361276|ref|XP_004047844.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Gorilla gorilla gorilla]
Length = 92
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + +I G + GFD+++N++L+D E S + R+ +L I+L G+N T+
Sbjct: 29 SRIQVWLYEQVNLQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGWIMLKGDNSTL 86
Query: 186 L 186
L
Sbjct: 87 L 87
>gi|393246263|gb|EJD53772.1| LSM-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 100
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 11/95 (11%)
Query: 92 HQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFV 151
+ RT T + APS ++ + +DK ++ + ++ +++ GTL GFD F+
Sbjct: 10 KKARTTTTRFFP--APSQKSDEQGFA--QFMDK----KLFVHIQGGRKVSGTLRGFDIFL 61
Query: 152 NMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
N++L+D + ES P + L +++ GN++T +
Sbjct: 62 NLVLDDAQD-ESVPAQK--APLGTVVIRGNSVTSM 93
>gi|429327225|gb|AFZ78985.1| U6 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 93
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
+AT S PL+++ + I++ K +EIVG L+ +D+ NM+L D E +T E
Sbjct: 1 MATTGSLQQPLDMIRLNLDEVIYLRCKGGREIVGRLHAYDEHCNMILSDAKETITTAE 58
>gi|146182714|ref|XP_001471048.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila]
gi|146143746|gb|EDK31351.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila SB210]
Length = 140
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRI 170
TNP T + + K + +I + + ++ G + GFD+++NM+L++ +E + +R
Sbjct: 10 TNPLTTI-FGFLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKTNQKR- 67
Query: 171 TKLDQILLNGNNITML 186
++ +ILL G NIT++
Sbjct: 68 -EIGRILLKGENITLI 82
>gi|440889654|gb|ELR44674.1| hypothetical protein M91_20945 [Bos grunniens mutus]
Length = 92
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEI----VGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +R I ++ +++ G++ GFD+ +N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIRVRLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ ++ ++E+ G L+ +D +NM+L DV E +T E
Sbjct: 18 PLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVE 66
>gi|357132320|ref|XP_003567778.1| PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary
subunit-like [Brachypodium distachyon]
Length = 99
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 121 LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQILLN 179
LVD+ I +I + + IVGTL GFD N++L++ E ST EG + L ++
Sbjct: 11 LVDQVI----SVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIR 66
Query: 180 GNNITMLG 187
G+NI ++G
Sbjct: 67 GDNIGVVG 74
>gi|156554389|ref|XP_001600882.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Nasonia
vitripennis]
Length = 94
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D EY + R+ L +I+L G+NIT++
Sbjct: 41 RIEGHIVGFDEYMNLVLDDAEEYHVKSKTRK--PLGRIMLKGDNITLI 86
>gi|296476433|tpg|DAA18548.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 142 GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
G++ GFD+ +N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 45 GSIIGFDECMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>gi|402864615|ref|XP_003896552.1| PREDICTED: ankyrin repeat and KH domain-containing protein
mask-like [Papio anubis]
Length = 504
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNGNNIT 184
I + +I + + IVGTL GFD +N++L++ E S+ +G L ++ G+N+T
Sbjct: 253 INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVT 312
Query: 185 MLGLHTHCGMR 195
L L G R
Sbjct: 313 PLHLACANGHR 323
>gi|169608576|ref|XP_001797707.1| hypothetical protein SNOG_07370 [Phaeosphaeria nodorum SN15]
gi|111063716|gb|EAT84836.1| hypothetical protein SNOG_07370 [Phaeosphaeria nodorum SN15]
Length = 234
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 31/45 (68%), Gaps = 7/45 (15%)
Query: 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
L++VDK ++ ++++++KE +G L +D F N++L T+CH+
Sbjct: 98 LDMVDK----KVDVLLRDEKEYIGILRSYDQFANLVL---TECHE 135
>gi|300711196|ref|YP_003737010.1| snRNP-like protein [Halalkalicoccus jeotgali B3]
gi|448296703|ref|ZP_21486756.1| snRNP-like protein [Halalkalicoccus jeotgali B3]
gi|299124879|gb|ADJ15218.1| snRNP-like protein [Halalkalicoccus jeotgali B3]
gi|445580835|gb|ELY35205.1| snRNP-like protein [Halalkalicoccus jeotgali B3]
Length = 61
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 54
PL++++ IG + + +K+ +E VGTL G+D +N+++ED
Sbjct: 5 PLDVLEAAIGDIVTVQLKDGEEFVGTLTGYDQHMNVVVED 44
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157
PL++++ IG + + +K+ +E VGTL G+D +N+++ED
Sbjct: 5 PLDVLEAAIGDIVTVQLKDGEEFVGTLTGYDQHMNVVVED 44
>gi|226509589|ref|NP_001148720.1| small nuclear ribonucleoprotein G [Zea mays]
gi|194698570|gb|ACF83369.1| unknown [Zea mays]
gi|195609740|gb|ACG26700.1| small nuclear ribonucleoprotein G [Zea mays]
gi|195621638|gb|ACG32649.1| small nuclear ribonucleoprotein G [Zea mays]
gi|195656303|gb|ACG47619.1| small nuclear ribonucleoprotein G [Zea mays]
gi|414867200|tpg|DAA45757.1| TPA: Small nuclear ribonucleoprotein G [Zea mays]
Length = 80
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + ++ I M ++ ++GTL GFD F+N+++++ E G T + +++ GN++
Sbjct: 12 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVIRGNSV 67
Query: 184 TML 186
M+
Sbjct: 68 VMI 70
>gi|388510216|gb|AFK43174.1| unknown [Lotus japonicus]
Length = 98
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ + +I +I + + IVG L GFD N++L++ E ST EG + L ++ G
Sbjct: 7 LESLVDQQISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
Query: 181 NNITMLG 187
+NI+++G
Sbjct: 67 DNISVVG 73
>gi|448534499|ref|XP_003870814.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis Co 90-125]
gi|380355169|emb|CCG24686.1| hypothetical protein CORT_0F04610 [Candida orthopsilosis]
Length = 86
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 10/87 (11%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSR----IHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
M++ SV+ + L P+ L+ K + + I + K+ I G + GFD+++N++++
Sbjct: 1 MSSKSVSK--TNLPPINLIFKFLQQQSLVTIWLYEKSHSRIQGKIQGFDEYMNLVID--- 55
Query: 160 EYESTPEGRRITKLDQILLNGNNITML 186
E E G++ T L ++LL G NIT++
Sbjct: 56 EAEEIVNGKK-TPLGKLLLKGENITLI 81
>gi|449017577|dbj|BAM80979.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 142 GTLNGFDDFVNMLLED-VTEYESTPE-GRRITKLDQILLNGNNITM---LGLHTHCGMRP 196
GTL GFD+ N++L D V ++ ST + RR L ILL G N+ + LG+ T R
Sbjct: 40 GTLRGFDEHTNLVLVDTVEQWGSTAKHKRRTVALGTILLKGENVVLVRSLGMPTQ---RK 96
Query: 197 YIQHS 201
+ HS
Sbjct: 97 EVTHS 101
>gi|121711637|ref|XP_001273434.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus clavatus
NRRL 1]
gi|119401585|gb|EAW12008.1| small nuclear ribonucleoprotein SmE, putative [Aspergillus clavatus
NRRL 1]
Length = 95
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEY----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E ++ E RR L QILL G+N++++
Sbjct: 42 RIEGKIRGFDEFMNLVVDDAVEVRMATKTDEEKRR--PLGQILLKGDNVSLI 91
>gi|119188491|ref|XP_001244852.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|320031840|gb|EFW13798.1| small nuclear ribonucleoprotein SmG [Coccidioides posadasii str.
Silveira]
gi|392867766|gb|EAS33463.2| small nuclear ribonucleoprotein SmG [Coccidioides immitis RS]
Length = 78
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ I + ++ ++G L G+D F+N++L++ E ++ E +L +++ GN
Sbjct: 8 LKKYMEKRLLIQINGNRRVIGVLRGYDVFMNIVLDEAIEEKTGGEK---VRLGMVVIRGN 64
Query: 182 NITML 186
++ ML
Sbjct: 65 SVVML 69
>gi|356534803|ref|XP_003535941.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm3-like
isoform 1 [Glycine max]
Length = 97
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL L+ + RI++ +++D+E+ G L+ +D +N++L DV E +T E
Sbjct: 12 PLNLIWLSLDERIYVKLRSDRELRGKLHAYDQHLNIVLGDVEEIVTTVE 60
>gi|299750975|ref|XP_001829959.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
gi|298409160|gb|EAU91881.2| U6 snRNA-associated Sm-like protein LSm4 [Coprinopsis cinerea
okayama7#130]
Length = 129
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ + + +KN + G L D+F+N+ L +V Y+++ EG R KL +
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREV--YQTSAEGDRFWKLKE 58
Query: 176 ILLNGNNITML 186
+ G+ I L
Sbjct: 59 CYIRGSTIKYL 69
>gi|238492871|ref|XP_002377672.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
gi|317156803|ref|XP_003190769.1| U6 snRNA-associated Sm-like protein LSm7 [Aspergillus oryzae RIB40]
gi|220696166|gb|EED52508.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
Length = 133
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
K + + + +E+VGTL GFD +N++L+DV E EG T+
Sbjct: 52 KYMDKEVRVKFNGGREVVGTLKGFDQLMNLVLDDVKESMRDDEGNENTR 100
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
+ + ++ I + ++ + G L GFD F+N++LED E S+ E +L +++ GN++
Sbjct: 11 RYMDKKLAIRLNANRRVSGILRGFDQFMNLVLEDTVEEVSSTEK---NELGMVVIRGNSV 67
Query: 184 TML 186
++
Sbjct: 68 ILI 70
>gi|340720323|ref|XP_003398590.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Bombus
terrestris]
gi|350408777|ref|XP_003488510.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Bombus
impatiens]
Length = 94
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D EY + R+ L +I+L G+NIT++
Sbjct: 41 RIEGHIVGFDEYMNLVLDDAEEYNLKTKARK--PLGRIMLKGDNITLI 86
>gi|340368632|ref|XP_003382855.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm7-like
[Amphimedon queenslandica]
Length = 108
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
+AP TLL EL K + RI + + +E G L G+D +N++L+ EY
Sbjct: 2 AASAPPDKKRRETLLSAEL-GKYLDKRIRVKFQGGRETSGILKGYDQLLNLVLDGAIEYL 60
Query: 163 STPE 166
P+
Sbjct: 61 QDPK 64
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 121
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
M AP+ P +L+ + R+ + ++ D+E+ G L+ +D +NM++ DV E
Sbjct: 1 MAAPTSGVQE----PFDLIRLSLNERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEE 53
Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
M AP+ P +L+ + R+ + ++ D+E+ G L+ +D +NM++ DV +
Sbjct: 1 MAAPTSGVQE----PFDLIRLSLNERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEET 54
>gi|365981439|ref|XP_003667553.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS 421]
gi|343766319|emb|CCD22310.1| hypothetical protein NDAI_0A01520 [Naumovozyma dairenensis CBS 421]
Length = 201
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST 164
+LPL L+ G ++ + +KN + I G L D+++N+ L +V+EY+ +
Sbjct: 1 MLPLYLLTNAKGQQMRVELKNGEVIEGKLTNVDNWMNLTLSNVSEYKGS 49
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L +V E
Sbjct: 14 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSNVEE 56
Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L +V +
Sbjct: 14 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSNVEET 57
>gi|441598236|ref|XP_004087442.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Nomascus leucogenys]
Length = 92
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+I G + GFD ++N++L+D E S + R+ +L +I+L G+NI +L
Sbjct: 42 QIEGCIIGFDKYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNIPLL 87
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ + + + + +K +E G L G+D +N++L+ E E EG + KL ++
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGKLQGYDVHMNLVLD---EAEELKEGDIVRKLGSVV 61
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 62 IRGDNIV 68
>gi|448410087|ref|ZP_21575036.1| Sm ribonucleoprotein-like protein [Halosimplex carlsbadense
2-9-1]
gi|445672367|gb|ELZ24943.1| Sm ribonucleoprotein-like protein [Halosimplex carlsbadense
2-9-1]
Length = 61
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL++++ +G + + +K +E VG L+G+D +N++LED D
Sbjct: 5 PLDVLEASLGEEVTVRLKGGEEYVGDLSGYDQHMNLVLEDDQDT 48
Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157
PL++++ +G + + +K +E VG L+G+D +N++LED
Sbjct: 5 PLDVLEASLGEEVTVRLKGGEEYVGDLSGYDQHMNLVLED 44
>gi|145492122|ref|XP_001432059.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145499004|ref|XP_001435488.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399168|emb|CAK64662.1| unnamed protein product [Paramecium tetraurelia]
gi|124402621|emb|CAK68091.1| unnamed protein product [Paramecium tetraurelia]
Length = 95
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I ++ ++ I G L GFD+++N++L+ EY+ + + +L +ILL G NI ++
Sbjct: 33 IWLVENDNLRIQGKLAGFDEYLNLVLDRAVEYDRKTKATK--ELGKILLKGENIVLV 87
>gi|326517334|dbj|BAK00034.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 80
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + ++ I + ++ ++GTL GFD F+N+++++ E G T + ++L GN++
Sbjct: 12 KYMDKKLQIKLNANRVVIGTLRGFDQFMNLVVDNTVEV----NGDEKTDIGMVVLRGNSV 67
Query: 184 TML 186
M+
Sbjct: 68 VMI 70
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella conradii
HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella conradii
HZ254]
Length = 72
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ + S + + +K +E G L G+D +N++LE+ E + E R KL I+
Sbjct: 5 PLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLENAEELKENEESR---KLGTII 61
Query: 178 LNGNNIT 184
+ G+ +
Sbjct: 62 VRGDTVV 68
>gi|336372413|gb|EGO00752.1| hypothetical protein SERLA73DRAFT_121184 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385171|gb|EGO26318.1| hypothetical protein SERLADRAFT_367910 [Serpula lacrymans var.
lacrymans S7.9]
Length = 115
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ + + +KN + G L D+F+N+ L +V Y+++ EG R KL +
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREV--YQTSAEGDRFWKLRE 58
Query: 176 ILLNGNNITML 186
+ G+ I L
Sbjct: 59 CYIRGSTIKYL 69
>gi|50309757|ref|XP_454891.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|15072878|emb|CAC48005.1| hypothetical protein [Kluyveromyces lactis]
gi|49644026|emb|CAG99978.1| KLLA0E20813p [Kluyveromyces lactis]
Length = 183
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLS----YFA 68
+LPL L+ G +H+ +KN + + GTL+ D+++N+ L +VT L Y
Sbjct: 1 MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNVTHVASGETLKLPSFYLK 60
Query: 69 SDLINFI 75
I ++
Sbjct: 61 GSFIKYV 67
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVT 159
+LPL L+ G +H+ +KN + + GTL+ D+++N+ L +VT
Sbjct: 1 MLPLYLLTNAKGQTMHVELKNGETVEGTLSDVDNWMNLTLSNVT 44
>gi|71030066|ref|XP_764675.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351631|gb|EAN32392.1| Sm protein, putative [Theileria parva]
Length = 84
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 113 PSTLL-PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
P TL PL+++ + I++ KN +E+VG L FD+ NM+L +VTE +T E
Sbjct: 4 PVTLQEPLDMIRLNLDEVIYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVE 58
Score = 35.8 bits (81), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 10 PSTLL-PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
P TL PL+++ + I++ KN +E+VG L FD+ NM+L +VT+
Sbjct: 4 PVTLQEPLDMIRLNLDEVIYLKCKNGRELVGRLQAFDEHCNMVLSEVTE 52
>gi|452825642|gb|EME32637.1| small nuclear ribonucleoprotein D2 [Galdieria sulphuraria]
Length = 119
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 9/78 (11%)
Query: 118 PLELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV----TEYESTPEGRRIT 171
PL L+ C+ G+ + I ++N K+++G + FD NM+LE+V TE + + R +
Sbjct: 37 PLSLLVDCVKDGTPVLINVRNSKKLLGKVKAFDRHFNMILENVKEIWTEIPKSKKARPVN 96
Query: 172 K---LDQILLNGNNITML 186
K + ++ L G+++ ++
Sbjct: 97 KDRFIPKMFLRGDSVVLV 114
>gi|320170227|gb|EFW47126.1| hypothetical protein CAOG_05070 [Capsaspora owczarzaki ATCC 30864]
Length = 95
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
+++ + S++ + + + VGTL GFD N++LE E E + G I L ++ G
Sbjct: 4 LEELLQSKVLVATTDGRIFVGTLRGFDQMCNIILEHTVEREFNAQRGVVIVALGLYIIKG 63
Query: 181 NNITMLGLHTHCGMRPYIQHSM 202
NI ++G + P I SM
Sbjct: 64 ENIAVVG-----SVDPEIDESM 80
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
P++LV + RI + +++++E+ G L+ +D +NM+L DV E E+ E
Sbjct: 18 PMDLVRLSLDERIFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVE 66
>gi|449016467|dbj|BAM79869.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 142 GTLNGFDDFVNMLLED-VTEYESTPE-GRRITKLDQILLNGNNITM---LGLHTHCGMRP 196
GTL GFD+ N++L D V ++ ST + RR L ILL G N+ + LG+ T R
Sbjct: 40 GTLRGFDEHTNLVLVDTVEQWGSTAKHKRRTVALGTILLKGENVVLVRSLGMPTQ---RK 96
Query: 197 YIQHS 201
+ HS
Sbjct: 97 EVTHS 101
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 123 DKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES-TPEGRRITKLDQ----IL 177
K I R+ + +++D+ +VG L FD +N++L D EY S +G + ++ + I+
Sbjct: 2 QKYINYRVRVTVQDDRMLVGNLMAFDKHMNVVLSDCQEYRSIKKKGEDLKEVKRSLGFIV 61
Query: 178 LNGNNITML 186
L G NI +
Sbjct: 62 LRGENIVTI 70
>gi|301098772|ref|XP_002898478.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
gi|262104903|gb|EEY62955.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
Length = 106
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M A + S P+ + K I + + +E+ GTL G+D VN++L+D E+
Sbjct: 1 MAANGASGGGSRKDPILDLAKYIDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDCVEFLR 60
Query: 164 TP 165
P
Sbjct: 61 DP 62
>gi|403351354|gb|EJY75167.1| putative small nuclear ribonucleoprotein E [Oxytricha trifallax]
Length = 91
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 128 SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SR+ I + D I G + GFD+++N +L+D E RR KL +I+L G+NI++
Sbjct: 28 SRVEIWLYENADLRIEGKIIGFDEYMNTVLDDAEEIYQKKGNRR--KLGRIILKGDNISL 85
Query: 186 L 186
+
Sbjct: 86 I 86
>gi|403174347|ref|XP_003333333.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170935|gb|EFP88914.2| hypothetical protein PGTG_15117 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 248
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 95 RTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNML 154
R+ TH T T P +LPL L+ G + + +KN + G L D+F+N+
Sbjct: 80 RSRTHPNRRKTTHRQTTQPP-MLPLALLHGAQGKPMLVELKNGETFNGHLIQCDNFMNLT 138
Query: 155 LEDVTEYESTPEGRRITKLDQILLNGNNITML 186
+ +V Y+++ G + KL + + GN I +
Sbjct: 139 MREV--YQTSANGEQFWKLPECYIRGNTIKYI 168
>gi|363748558|ref|XP_003644497.1| hypothetical protein Ecym_1454 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888129|gb|AET37680.1| hypothetical protein Ecym_1454 [Eremothecium cymbalariae
DBVPG#7215]
Length = 76
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + ++ I + +++VG L G+D F+N++L+D E GR+ D ++ GN
Sbjct: 7 LKKYMERKLFIQLNGSRKVVGVLRGYDVFLNVVLDDALEVHKN--GRKFPLGDHTVIRGN 64
Query: 182 NITML 186
+I L
Sbjct: 65 SIVSL 69
>gi|256269021|gb|EEU04361.1| Lsm7p [Saccharomyces cerevisiae JAY291]
Length = 108
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S+I + + K ++G L G+D +N++L+D EY S P+ T+L
Sbjct: 29 SKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTEL 74
>gi|854491|emb|CAA86879.1| orf2 [Saccharomyces cerevisiae]
gi|1302101|emb|CAA96030.1| unnamed protein product [Saccharomyces cerevisiae]
gi|190409133|gb|EDV12398.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|349580792|dbj|GAA25951.1| K7_Lsm7p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 107
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S+I + + K ++G L G+D +N++L+D EY S P+ T+L
Sbjct: 28 SKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTEL 73
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 13/82 (15%)
Query: 118 PLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEY--ESTPEGRRITK- 172
PL ++ K + S + + +N+++++ + FD NM+LEDV E+ E T G+ TK
Sbjct: 27 PLSVLTKAVRSNAQVFINCRNNRKLLARVKAFDRHFNMILEDVREFWTEGTRAGKGKTKS 86
Query: 173 --------LDQILLNGNNITML 186
+ ++ L G+++ ++
Sbjct: 87 KPVNKDRFISKLFLRGDSVIII 108
>gi|145353525|ref|XP_001421061.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581297|gb|ABO99354.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 72
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE---YESTPEGRRITKLDQILLNGNNIT 184
++ + + ++ +VGTL GFD F+N++L+D T E TP G I++ GN++
Sbjct: 3 KKLRLRLNGNRNVVGTLRGFDQFLNVVLDDATNDTTSEKTPMG-------MIVVRGNSVV 55
Query: 185 MLGLHTHCGMRPYIQHS 201
+ H P ++
Sbjct: 56 SMEALEHIA--PAVRRQ 70
>gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM 1728]
gi|11387090|sp|P57670.1|RUXX_THEAC RecName: Full=Putative snRNP Sm-like protein
gi|10640586|emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
Length = 83
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
P+ + P++++ + + I +K ++E G L G+D ++N++L++ +E G
Sbjct: 5 PANVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASE---IINGENKGV 61
Query: 173 LDQILLNGNNITML 186
D++L+ G+N+ +
Sbjct: 62 YDRVLVRGDNVIFV 75
>gi|348673388|gb|EGZ13207.1| hypothetical protein PHYSODRAFT_334991 [Phytophthora sojae]
Length = 106
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
M A + S P+ + K I + + +E+ GTL G+D VN++L+D E+
Sbjct: 1 MAANGASGGGSRKDPILDLAKYIDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDCVEFLR 60
Query: 164 TP 165
P
Sbjct: 61 DP 62
>gi|323448125|gb|EGB04028.1| hypothetical protein AURANDRAFT_33181 [Aureococcus anophagefferens]
Length = 103
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR-------RIT--- 171
++KCI + + + +E+ G L GFD VN++L++ E R R+T
Sbjct: 9 LEKCIDKEVRVKFQGGREVRGVLKGFDQLVNIVLDNCVESMHGASARAHPDDPYRLTDKT 68
Query: 172 -KLDQILLNGNNITMLGLHTHCGMR----PYIQHS 201
KL ++ G ++++ GM P+IQHS
Sbjct: 69 RKLGLVVCRGLQVSLVSPVD--GMEEIANPFIQHS 101
>gi|307107960|gb|EFN56201.1| hypothetical protein CHLNCDRAFT_22477 [Chlorella variabilis]
Length = 101
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
K + I + + +E+VG L G+D +N++L++ EY PE
Sbjct: 14 KFVDKSIRVKLAGGREVVGVLKGYDQLLNLVLDEAVEYLRDPE 56
>gi|339247003|ref|XP_003375135.1| small nuclear ribonucleoprotein E [Trichinella spiralis]
gi|316971586|gb|EFV55343.1| small nuclear ribonucleoprotein E [Trichinella spiralis]
Length = 93
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Query: 142 GTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML-GLHT 190
G + GFD+F+N++LE+ E + + RR ++ +ILL G IT++ LHT
Sbjct: 46 GYIVGFDEFMNIVLEEAEEVDLKSKQRR--QIGRILLKGECITLIQALHT 93
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + ++++ ++ D+E G L+ +D +NM+L DV E
Sbjct: 13 PLDLIRLALDEKVYVKLRGDREARGRLHAYDQHLNMILGDVEE 55
Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + ++++ ++ D+E G L+ +D +NM+L DV +
Sbjct: 13 PLDLIRLALDEKVYVKLRGDREARGRLHAYDQHLNMILGDVEEV 56
>gi|115453489|ref|NP_001050345.1| Os03g0410900 [Oryza sativa Japonica Group]
gi|37991869|gb|AAR06315.1| putative small nuclear ribonucleoprotein polypeptide G [Oryza
sativa Japonica Group]
gi|108708766|gb|ABF96561.1| small nuclear ribonucleoprotein G, putative, expressed [Oryza
sativa Japonica Group]
gi|113548816|dbj|BAF12259.1| Os03g0410900 [Oryza sativa Japonica Group]
gi|125544286|gb|EAY90425.1| hypothetical protein OsI_12008 [Oryza sativa Indica Group]
gi|125586635|gb|EAZ27299.1| hypothetical protein OsJ_11235 [Oryza sativa Japonica Group]
gi|215769229|dbj|BAH01458.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 80
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + ++ I + ++ IVGTL GFD F+N+++++ E G T + +++ GN++
Sbjct: 12 KYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVEV----NGNDKTDIGMVVVRGNSV 67
Query: 184 TML 186
M+
Sbjct: 68 VMI 70
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+L+ + RI++ ++ D+E+ G L+ +D +NM+L +V E
Sbjct: 11 PLDLIRLSLDERIYVKLRGDRELRGRLHAYDQHLNMILGEVEE 53
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ ++ D+E+ G L+ +D +NM+L +V +
Sbjct: 11 PLDLIRLSLDERIYVKLRGDRELRGRLHAYDQHLNMILGEVEET 54
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQI 176
+ ++++D+ I + I +K K I GTL GFD +N+LL+ E + + + L I
Sbjct: 1 MAVKVLDESIDQVVLIKLKGSKTIRGTLLGFDQHMNLLLDSSEEIPAEGDSK---SLGTI 57
Query: 177 LLNGNNITML 186
++ G+N+ M+
Sbjct: 58 VVRGDNVVMI 67
>gi|346325864|gb|EGX95460.1| small nuclear ribonucleoprotein SmG [Cordyceps militaris CM01]
Length = 85
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL--LNGN 181
K + R+ + + ++++G L G+D F+N++L+D E EG KL +L + GN
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAFE---EREGGNKAKLGMVLKVIRGN 66
Query: 182 NITMLGLHTHCG 193
++ ML G
Sbjct: 67 SVVMLEAMERIG 78
>gi|400600902|gb|EJP68570.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 255
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
K + +I + +E++GTL GFD +N++L+DV E EG T+
Sbjct: 173 KYMDKQITVKFNGGREVMGTLKGFDALMNLVLDDVQETVRDEEGNESTR 221
>gi|255087330|ref|XP_002505588.1| predicted protein [Micromonas sp. RCC299]
gi|226520858|gb|ACO66846.1| predicted protein [Micromonas sp. RCC299]
Length = 87
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCI--GSRIHIIMKNDKEIV--GTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +RI I + + + V G + GFD+++N++L+D E + +G R T +
Sbjct: 12 PINLIFRFLQTKARIQIWLYENTDTVVEGRIIGFDEYMNLVLDDAEEV-NKKKGTRKT-V 69
Query: 174 DQILLNGNNITML 186
+ILL G+NITM+
Sbjct: 70 GRILLKGDNITMM 82
>gi|449542283|gb|EMD33263.1| hypothetical protein CERSUDRAFT_87573 [Ceriporiopsis subvermispora
B]
Length = 132
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ + + +KN + G L D+F+N+ L +V Y+++ EG R KL +
Sbjct: 1 MLPLSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREV--YQTSAEGDRFWKLKE 58
Query: 176 ILLNGNNITML 186
+ G+ I L
Sbjct: 59 CYIRGSTIKYL 69
>gi|320169252|gb|EFW46151.1| LSM1 protein [Capsaspora owczarzaki ATCC 30864]
Length = 137
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 18/82 (21%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-------YESTP 165
P + LE +DK ++ +++++ ++++G L FD F N++L+D E Y P
Sbjct: 7 PGSASLLEELDK----KLMVVLRDGRKLIGFLRSFDQFANLVLQDTIERIYVGDAYGDIP 62
Query: 166 EGRRITKLDQILLNGNNITMLG 187
G L+ G N+ +LG
Sbjct: 63 RGI-------FLIRGENVVLLG 77
>gi|170040621|ref|XP_001848091.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
gi|167864230|gb|EDS27613.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
Length = 196
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST-------PEGRRITKLDQILLNGN 181
R+ I++++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 8 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKLPEREEKRVLGFVLLRGG 67
Query: 182 NITML 186
NI L
Sbjct: 68 NIVSL 72
>gi|340520043|gb|EGR50280.1| predicted protein [Trichoderma reesei QM6a]
gi|358387525|gb|EHK25119.1| hypothetical protein TRIVIDRAFT_32934 [Trichoderma virens Gv29-8]
Length = 83
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L++ E + E +L +++ GN++
Sbjct: 10 KYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVEEKDGGEK---IRLGMVVIRGNSV 66
Query: 184 TMLGLHTHCG 193
ML G
Sbjct: 67 VMLEALERIG 76
>gi|390981169|pdb|4EMK|C Chain C, Crystal Structure Of Splsm567
Length = 113
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT----KLDQILLNGNNI 183
RI ++I G L GFD N++L+DV E PE ++T KL +++ G +
Sbjct: 34 QRIQATFTGGRQITGILKGFDQLXNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTL 93
Query: 184 TML 186
++
Sbjct: 94 VLI 96
>gi|340369040|ref|XP_003383057.1| PREDICTED: n-alpha-acetyltransferase 38, NatC auxiliary
subunit-like [Amphimedon queenslandica]
Length = 97
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQ 175
+ L ++ + + II + + IVGTL GFD VN++L + E S+ G +L
Sbjct: 1 MALSSIEPYVNRSVSIITGDGRVIVGTLKGFDQTVNIILSNSHERVYSSSSGVEQVQLGL 60
Query: 176 ILLNGNNITMLG 187
++ G+NI ++G
Sbjct: 61 YIIRGDNIAVIG 72
>gi|198475808|ref|XP_001357165.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
gi|198137969|gb|EAL34232.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
Length = 191
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILLNGN 181
R+ I++++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 8 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGE 67
Query: 182 NITML 186
NI L
Sbjct: 68 NIVSL 72
>gi|156540632|ref|XP_001599264.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B
[Nasonia vitripennis]
Length = 217
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILLNGN 181
R+ II+++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 16 RVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLLRGE 75
Query: 182 NITML 186
NI L
Sbjct: 76 NIVSL 80
>gi|336463585|gb|EGO51825.1| hypothetical protein NEUTE1DRAFT_53111 [Neurospora tetrasperma FGSC
2508]
Length = 144
Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
K + RI + +E+ GTL G+D +N++L+DV E EG T+
Sbjct: 61 KYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVRDEEGNETTR 109
>gi|409048518|gb|EKM57996.1| hypothetical protein PHACADRAFT_251944 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQILLNGNNITMLG 187
R+ +I+++ + IVG + GFD N++L D E ST EG L L+ G+ I ++G
Sbjct: 11 RVLLILQDGRAIVGVMAGFDQKSNVVLSDSKERVYSTEEGVEEIPLGLYLVKGDQIVVIG 70
>gi|397624778|gb|EJK67508.1| hypothetical protein THAOC_11446 [Thalassiosira oceanica]
Length = 222
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
+ +PL + K +I + I G + GFD+++N +L+ TE + G+R T +
Sbjct: 150 SRIPLAQIRKKTRVKIWLYEDTRMSIEGQIIGFDEYMNFVLDSATEVD-MKTGKR-TDVG 207
Query: 175 QILLNGNNITML 186
+ILL G+ IT++
Sbjct: 208 RILLKGDAITLM 219
>gi|358390848|gb|EHK40253.1| hypothetical protein TRIATDRAFT_252624 [Trichoderma atroviride IMI
206040]
Length = 83
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + + ++++G L G+D F+N++L++ E + E +L +++ GN++
Sbjct: 10 KYLDKRLFVQLNGGRKVIGVLRGYDVFLNVVLDEAVEEKDGGEK---IRLGMVVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>gi|321465034|gb|EFX76038.1| hypothetical protein DAPPUDRAFT_226183 [Daphnia pulex]
Length = 103
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 52
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L
Sbjct: 17 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVL 54
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL 155
PL+L+ + RI++ M+N++E+ G L+ +D +NM+L
Sbjct: 17 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVL 54
>gi|158267618|ref|NP_014252.2| Lsm7p [Saccharomyces cerevisiae S288c]
gi|150421590|sp|P53905.2|LSM7_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm7
gi|259149212|emb|CAY82454.1| Lsm7p [Saccharomyces cerevisiae EC1118]
gi|285814507|tpg|DAA10401.1| TPA: Lsm7p [Saccharomyces cerevisiae S288c]
gi|392296845|gb|EIW07946.1| Lsm7p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 115
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S+I + + K ++G L G+D +N++L+D EY S P+ T+L
Sbjct: 36 SKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTEL 81
>gi|388853510|emb|CCF52909.1| probable small nuclear ribonucleoprotein E [Ustilago hordei]
Length = 86
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 137 DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
D I G + GFD+F+N+ L D E + + + + +L +ILL G+NIT++
Sbjct: 34 DFRIEGKIIGFDEFMNVTLADAEEVWTKKDNKHV-ELGRILLKGDNITLI 82
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
PL+LV C+ +++ ++ D+E+ G L+ +D N++L DV E
Sbjct: 14 PLDLVRLCLDEVVYVKLRGDRELKGRLHAYDSHCNLVLGDVVE 56
Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+LV C+ +++ ++ D+E+ G L+ +D N++L DV +
Sbjct: 14 PLDLVRLCLDEVVYVKLRGDRELKGRLHAYDSHCNLVLGDVVE 56
>gi|134056432|emb|CAL00599.1| unnamed protein product [Aspergillus niger]
Length = 143
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 23/105 (21%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE------ 160
P + T + LL +L DK ++ +++++ ++++G L +D F N++L+D E
Sbjct: 10 PQMFTTAAQLL--DLTDK----KLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGN 63
Query: 161 -YESTPEGRRITKLDQILLNGNNITMLG---LHTHCGMRPYIQHS 201
Y P G L+ G N+ +LG L + P+IQ +
Sbjct: 64 LYADIPRG-------IFLVRGENVLLLGEIDLDKEDDIPPHIQRA 101
>gi|429853426|gb|ELA28500.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 104
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGN 181
+ K + R+ + + ++++G L G+D F+N++L++ E EG +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRLGMVVIRGN 64
Query: 182 NIT 184
++
Sbjct: 65 SVV 67
>gi|424811999|ref|ZP_18237239.1| small nuclear ribonucleoprotein [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756221|gb|EGQ39804.1| small nuclear ribonucleoprotein [Candidatus Nanosalinarum sp.
J07AB56]
Length = 75
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+++ G+ + I +K++ + GTL FD +NM L+D + ++ +GR +IL
Sbjct: 8 PLDVLGDARGTNVMIELKDETVVSGTLRAFDSHLNMWLDDAS--KTGEDGRE--DFGKIL 63
Query: 178 LNGNNI 183
+ G+N+
Sbjct: 64 IRGDNV 69
>gi|328778046|ref|XP_003249437.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
mellifera]
Length = 94
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D EY + R+ L +I+L G+NIT++
Sbjct: 41 RIEGHIVGFDEYMNLVLDDAEEYHLKTKNRK--PLGRIMLKGDNITLI 86
>gi|449018375|dbj|BAM81777.1| U6 snRNA-associated Sm-like protein LSm6 [Cyanidioschyzon merolae
strain 10D]
Length = 99
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
P+T P + K +G + + + N E GTL D ++N++LE+ E+ + RR
Sbjct: 24 PATRTPTHFLRKVLGRPVVVKLNNGTEYRGTLVCLDGYLNIVLENSAEFLNGELKRRY-- 81
Query: 173 LDQILLNGNNITMLG 187
LL G+N+ +G
Sbjct: 82 -GDTLLRGSNVLYVG 95
>gi|315425168|dbj|BAJ46838.1| hypothetical conserved protein [Candidatus Caldiarchaeum
subterraneum]
Length = 66
Score = 37.4 bits (85), Expect = 3.3, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
I + + +KND GT+ D ++NMLLE V EY + ++L+ GNNI
Sbjct: 4 INKPVRVFLKNDARYEGTMVECDGYMNMLLEHVVEYMGD---SKTAGYPKVLIRGNNI 58
>gi|300176178|emb|CBK23489.2| unnamed protein product [Blastocystis hominis]
Length = 95
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G +NGFD+++N++L++ +E + R+ L +ILL G+N+T++
Sbjct: 46 RIEGVINGFDEYMNIVLDNASEVNIKMKTRK--NLGKILLKGDNVTLI 91
>gi|109018143|ref|XP_001098283.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Macaca mulatta]
Length = 92
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P++L+ + + +R I + + + I G + GFD+++N +L D E S + R+ +L
Sbjct: 17 PIDLIFRFLQNRFQIQVWLYEQVNIWIEGCITGFDEYMNFVLVDAEEIYSKTKLRK--QL 74
Query: 174 DQILLNGNNITML 186
I+L G+NIT L
Sbjct: 75 GWIMLKGDNITQL 87
>gi|380479557|emb|CCF42948.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 96
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYESTP----EGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E + E +R T L QILL G+N++++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAVEVKQITKTNLEEKR-TPLGQILLKGDNVSLI 91
>gi|383852431|ref|XP_003701731.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Megachile rotundata]
Length = 219
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILLNGN 181
RI II+++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 18 RIRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREDKRVLGFVLLRGE 77
Query: 182 NITML 186
NI L
Sbjct: 78 NIVSL 82
>gi|195434134|ref|XP_002065058.1| GK14876 [Drosophila willistoni]
gi|194161143|gb|EDW76044.1| GK14876 [Drosophila willistoni]
Length = 191
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILLNGN 181
R+ I++++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 8 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGE 67
Query: 182 NITML 186
NI L
Sbjct: 68 NIVSL 72
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S + ++++D+ I + I +K +K I G L GFD +N+LL+ E + E + L
Sbjct: 2 SVDMAVKVLDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAK---GL 58
Query: 174 DQILLNGNNITML 186
I++ G+N+ M+
Sbjct: 59 GSIVVRGDNVVMI 71
>gi|289742143|gb|ADD19819.1| small ribonucleoprotein particle protein B [Glossina morsitans
morsitans]
Length = 200
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILLNGN 181
R+ I++++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 16 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNAKVPEREEKRVLGFVLLRGE 75
Query: 182 NITML 186
NI L
Sbjct: 76 NIVSL 80
>gi|255082277|ref|XP_002508357.1| predicted protein [Micromonas sp. RCC299]
gi|226523633|gb|ACO69615.1| predicted protein [Micromonas sp. RCC299]
Length = 104
Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
K I + + + +E+ GTL GFD +N++L++ EY PE
Sbjct: 13 KFIDKGVRVKLAGGREVTGTLKGFDQLLNLVLDECEEYLRDPE 55
>gi|387914532|gb|AFK10875.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E + R+ L +++L G+NIT+
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHMKSKARK--PLGRVMLKGDNITL 86
Query: 186 L 186
L
Sbjct: 87 L 87
>gi|392874340|gb|AFM86002.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392875604|gb|AFM86634.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392884142|gb|AFM90903.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 128 SRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITM 185
SRI + + + + I G + GFD+++N++L+D E + R+ L +++L G+NIT+
Sbjct: 29 SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHMKSKARK--PLGRVMLKGDNITL 86
Query: 186 L 186
L
Sbjct: 87 L 87
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE--YESTP 165
++ T PL+L+ + + + ++ +E+ G L G+D NM+L D E Y
Sbjct: 45 NIQTGAQQEEPLDLIRYQLDESVLVKLRGAREMKGKLQGYDSHCNMVLSDAQETIYGENE 104
Query: 166 EGRRITKLDQILLNGNNITMLG 187
E + K + + + G+++ ++
Sbjct: 105 EDTVVKKTEMVFVRGDSVILIS 126
>gi|164661255|ref|XP_001731750.1| hypothetical protein MGL_1018 [Malassezia globosa CBS 7966]
gi|159105651|gb|EDP44536.1| hypothetical protein MGL_1018 [Malassezia globosa CBS 7966]
Length = 130
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
AP +L L K + I + +E+VGTL G+D + ++++DV E + P
Sbjct: 32 APQEKPKKEAILNLA---KYVDKEIRVKFMGGREVVGTLKGYDQLMTLVMDDVEEIKHDP 88
Query: 166 E-----GRRITKLDQILLNGNNITML 186
G R T L +L G N+T++
Sbjct: 89 SNGNTTGERRT-LGLAVLRGTNLTLI 113
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE---------YESTPEGR 168
PL+LV CI + + ++ D+E+ G L+ +D N++L DV E + P R
Sbjct: 10 PLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRVR 69
Query: 169 RITKLDQIL-LNGNNITMLG 187
+ K ++L + G+++ ++
Sbjct: 70 TVKKQSEMLFVRGDSVVLIA 89
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,280,151,126
Number of Sequences: 23463169
Number of extensions: 134732483
Number of successful extensions: 316826
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 888
Number of HSP's that attempted gapping in prelim test: 314353
Number of HSP's gapped (non-prelim): 3028
length of query: 204
length of database: 8,064,228,071
effective HSP length: 136
effective length of query: 68
effective length of database: 9,168,204,383
effective search space: 623437898044
effective search space used: 623437898044
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)