BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy800
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5
PE=3 SV=2
Length = 91
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5
PE=1 SV=3
Length = 91
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3
SV=3
Length = 91
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium
discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVTEYE TPEG + KL
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 174 DQILLNGNNITML 186
D ILLNGN++ +L
Sbjct: 74 DNILLNGNHVCLL 86
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVT+
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTE 60
>sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2
Length = 80
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 55/72 (76%), Gaps = 2/72 (2%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T+LPLEL+DKCIGS + +IMK+++E GTL GFDD+VN++L+DVTEY++ K
Sbjct: 4 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVT--GVTEKHS 61
Query: 175 QILLNGNNITML 186
++LLNGN + ML
Sbjct: 62 EMLLNGNGMCML 73
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 41/46 (89%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIGS + +IMK+++E GTL GFDD+VN++L+DVT+
Sbjct: 4 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE 49
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR-RITKLD 174
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED E+ PE R K+
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVM 65
Query: 175 Q----ILLNGNNITML 186
Q +LL+GNNI +L
Sbjct: 66 QHHGRMLLSGNNIAIL 81
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED +
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEW 51
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY--------ESTPEG 167
+LPL L+ G ++ I +KN + I G L D+++N+ L +VTEY E E
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAES 60
Query: 168 RRITKLDQILLNGNNITMLGLH 189
+ KL++I + G I + L
Sbjct: 61 SKAVKLNEIYIRGTFIKFIKLQ 82
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60
+LPL L+ G ++ I +KN + I G L D+++N+ L +VT+ +
Sbjct: 1 MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSE 48
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3
SV=3
Length = 102
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEET 60
>sp|A1XQR9|RUXE_PIG Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 103 TMTAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTE 160
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 7 AQKVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEE 63
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 64 IHSKTKSRK--QLGRIMLKGDNITLL 87
>sp|P62305|RUXE_MOUSE Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2
SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>sp|P62304|RUXE_HUMAN Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1
SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>sp|P62303|RUXE_CHICK Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3
SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>sp|A4FUI2|RUXE_BOVIN Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 105 TAPSVATNPSTLLPLELVDKCIGSRIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYE 162
V P L+ L ++ SRI + + + + I G + GFD+++N++L+D E
Sbjct: 9 KVQKVMVQPINLIFRYLQNR---SRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIH 65
Query: 163 STPEGRRITKLDQILLNGNNITML 186
S + R+ +L +I+L G+NIT+L
Sbjct: 66 SKTKSRK--QLGRIMLKGDNITLL 87
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium
discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV E E T ++I+
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETD-EEII 70
Query: 178 LN-GNNITML 186
N NI ML
Sbjct: 71 RNIKRNIKML 80
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDC 58
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEET 55
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I + + D + G + GFD+F+N++L+D + ++ R +L +ILL G+NIT++
Sbjct: 28 IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKR---ELGRILLKGDNITLI 81
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G I + +KN + G L D+++N+ L +V + P+G + +L +
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVI--RTMPDGDKFFRLPE 58
Query: 176 ILLNGNNITMLGLH 189
+ GNNI L +
Sbjct: 59 CYIRGNNIKYLRIQ 72
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+ + + S + I +K D+E G L FD +N++L D E E +G +L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 70
Query: 178 LNGNNIT 184
+ G+NI
Sbjct: 71 IRGDNIV 77
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLI 72
PL+ + + S + I +K D+E G L FD +N++L D + D + + LI
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLI 71
>sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
elegans GN=snr-6 PE=3 SV=1
Length = 90
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 112 NPSTLLPLELVDKCIG--SRIHIIMKND--KEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
N + P+ L+ + + +R+ I + D + G + GFD+F+N++ ++ E +G
Sbjct: 7 NKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKG 66
Query: 168 RRITKLDQILLNGNNITML 186
R K+ +ILL G+NIT++
Sbjct: 67 R--NKIGRILLKGDNITLI 83
>sp|A8XDT0|RUXE_CAEBR Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
briggsae GN=snr-6 PE=3 SV=1
Length = 90
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 107 PSVATNPSTLLPLELVDKCIGSRIHIIMKND--KEIVGTLNGFDDFVNMLLEDVTEYEST 164
V P L+ L ++ +R+ I + D + G + GFD+F+N++ ++ E
Sbjct: 7 QKVMVQPVNLIFRYLQNR---TRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMK 63
Query: 165 PEGRRITKLDQILLNGNNITML 186
+GR K+ +ILL G+NIT++
Sbjct: 64 TKGR--NKIGRILLKGDNITLI 83
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT----KLDQILLNGNNI 183
RI ++I G L GFD +N++L+DV E PE ++T KL +++ G +
Sbjct: 34 QRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTL 93
Query: 184 TML 186
++
Sbjct: 94 VLI 96
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 25 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
RI ++I G L GFD +N++L+DV +
Sbjct: 34 QRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+++++ + S + + +K +E GTL+G+D +N++L D E ++ G + K+ ++
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQN---GEVVRKVGSVV 61
Query: 178 LNGNNITML 186
+ G+ + +
Sbjct: 62 IRGDTVVFV 70
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLIN 73
PL+++++ + S + + +K +E GTL+G+D +N++L D + + ++ S +I
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIR 63
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 37.7 bits (86), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK 172
P+ + P++++ + + I +K ++E G L G+D ++N++L++ +E G
Sbjct: 5 PANVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASE---IINGENKGV 61
Query: 173 LDQILLNGNNITML 186
D++L+ G+N+ +
Sbjct: 62 YDRVLVRGDNVIFV 75
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 31/48 (64%)
Query: 10 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
P+ + P++++ + + I +K ++E G L G+D ++N++L++ ++
Sbjct: 5 PANVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASE 52
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S+I + + K ++G L G+D +N++L+D EY S P+ T+L
Sbjct: 36 SKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTEL 81
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B OS=Drosophila
melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-------STPEGRRITKLDQILLNGN 181
R+ I++++ + +GT FD +N++L D E+ PE L +LL G
Sbjct: 16 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGE 75
Query: 182 NITML 186
NI L
Sbjct: 76 NIVSL 80
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEY------ESTPEGRRIT 171
PL+L+ + R++I ++ + +VGTL FD N++L D E E E R
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESER-- 61
Query: 172 KLDQILLNGNNITMLG 187
+ + + + G+ +T++
Sbjct: 62 RCEMVFIRGDTVTLIS 77
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + R++I ++ + +VGTL FD N++L D +
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0339 PE=3 SV=1
Length = 72
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ + + + + +K +E G L G+D +N++L++ E EG ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---EGEVVSKFSSVV 61
Query: 178 LNGNNIT 184
+ G+N+
Sbjct: 62 IRGDNVV 68
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 36/58 (62%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLI 72
PL++++ + + + + +K +E G L G+D +N++L++ + + ++S F+S +I
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFSSVVI 62
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 36/58 (62%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLI 72
PL++++ + + + + +K +E G L G+D +N++L++ + D ++S F+S +I
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELRDGEVVSKFSSVVI 62
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ + + + + +K +E G L G+D +N++L++ E +G ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---DGEVVSKFSSVV 61
Query: 178 LNGNNIT 184
+ G+N+
Sbjct: 62 IRGDNVV 68
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ + + + + +K +E G L G+D +N++L++ E EG ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---EGEVVSKFGSVV 61
Query: 178 LNGNNIT 184
+ G+N+
Sbjct: 62 IRGDNVV 68
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 35/58 (60%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLI 72
PL++++ + + + + +K +E G L G+D +N++L++ + + ++S F S +I
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELREGEVVSKFGSVVI 62
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ---------ILL 178
R+ +I + + ++G+L GFD N++L D E RI +DQ LL
Sbjct: 9 QRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE--------RIISMDQDMETIPLGVYLL 60
Query: 179 NGNNITMLGL 188
G N+ M+GL
Sbjct: 61 RGENVAMVGL 70
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 125 CIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ--ILLNGNN 182
+ +I +++++ + + G L FD + N++L+D E E + + D+ ++ G N
Sbjct: 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGEN 108
Query: 183 ITMLG 187
+ MLG
Sbjct: 109 VVMLG 113
>sp|Q7ZUG0|RUXE_DANRE Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3 SV=1
Length = 92
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +R I + + + I G + GFD+++N++L+D E + R+ L
Sbjct: 17 PINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL++++ + + + + +K +E G L G+D +N++L+ E E +G + K+ ++
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLD---EAEELKDGEIVRKIGGVV 61
Query: 178 LNGNNIT 184
+ G+N+
Sbjct: 62 IRGDNVV 68
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/58 (20%), Positives = 32/58 (55%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLI 72
PL++++ + + + + +K +E G L G+D +N++L++ + D ++ +I
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELKDGEIVRKIGGVVI 62
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 118 PLELVDKCIGSRIHII--MKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITK--- 172
P+ L++ + +R +I ++N+ +I+ + FD NM+LE+V E + +G+ +
Sbjct: 30 PMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNVINRER 89
Query: 173 -LDQILLNGNNITML 186
+ ++ L G+++ ++
Sbjct: 90 FISKLFLRGDSVIVV 104
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 36/112 (32%)
Query: 80 MITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKE 139
M+ PI C ++ Q +T L+ IG RI
Sbjct: 10 MVPPINCIFNFLQQQTPVTIWLFEQ---------------------IGIRIK-------- 40
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE-STPEGR----RITKLDQILLNGNNITML 186
G + GFD+F+N+++++ E ++ +G+ + T L +ILL G+NIT++
Sbjct: 41 --GKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLI 90
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3 SV=1
Length = 76
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+++ K + + +++K E G L G+D +N++L D E +G + K +I+
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADA---ELIQDGEVVKKYGKIV 61
Query: 178 LNGNNITML 186
+ G+N+ L
Sbjct: 62 IRGDNVLAL 70
Score = 30.4 bits (67), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLIN 73
PL+++ K + + +++K E G L G+D +N++L D D ++ + +I
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADAELIQDGEVVKKYGKIVIR 63
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 139 EIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D E RR L +I+L G+NIT++
Sbjct: 41 RIEGHIVGFDEYMNLVLDDAEEVYVKTRQRR--NLGRIMLKGDNITLI 86
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 39/69 (56%)
Query: 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILL 178
+ +++ + ++ ++ + + I+GTL G D +N++LE E + EG + L L+
Sbjct: 1 MAMLESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLI 60
Query: 179 NGNNITMLG 187
G+++ ++G
Sbjct: 61 KGDDVAVIG 69
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + ++ I +K ++ IVGTL GFD F+N+++++ E G + +++ GN++
Sbjct: 12 KYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEV----NGNEKNDIGMVVIRGNSV 67
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 21 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
K + ++ I +K ++ IVGTL GFD F+N+++++ + + +
Sbjct: 12 KYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNE 53
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + ++ + + +++ G L G+D F+N++LED E +G ++ K+ + + GN++
Sbjct: 11 KYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLED--SIEEKVDGEKV-KIGSVAIRGNSV 67
Query: 184 TML 186
M+
Sbjct: 68 IMI 70
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+++ + + + +I+K E G L G+D +N++L D E +G + K +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMVQDGEVVKKYGKIV 61
Query: 178 LNGNNI 183
+ G+N+
Sbjct: 62 IRGDNV 67
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ I + +I + + IVGTL GFD +N++L++ E S+ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 181 NNITMLG 187
+N+ ++G
Sbjct: 65 DNVAVIG 71
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ I + +I + + IVGTL GFD +N++L++ E S+ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 181 NNITMLG 187
+N+ ++G
Sbjct: 65 DNVAVIG 71
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ I + +I + + IVGTL GFD +N++L++ E S+ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 181 NNITMLG 187
+N+ ++G
Sbjct: 65 DNVAVIG 71
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos taurus
GN=NAA38 PE=3 SV=3
Length = 96
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ I + +I + + IVGTL GFD +N++L++ E S+ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 181 NNITMLG 187
+N+ ++G
Sbjct: 65 DNVAVIG 71
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+++++ + S + + +K +E G L G+D +N++L++ E + R KL I+
Sbjct: 5 PLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASR---KLGTII 61
Query: 178 LNGNNIT 184
+ G+ +
Sbjct: 62 VRGDTVV 68
Score = 30.8 bits (68), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 30/48 (62%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH 62
PL+++++ + S + + +K +E G L G+D +N++L++ + ++
Sbjct: 5 PLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENE 52
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P++++ + + I +K ++E G L G+D ++N++L++ +E G D+IL
Sbjct: 10 PMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASE---IINGENKGVFDRIL 66
Query: 178 LNGNNITML 186
+ G+N+ +
Sbjct: 67 VRGDNVIFV 75
>sp|Q8SQK1|LSM2_ENCCU Probable U6 snRNA-associated Sm-like protein LSm2
OS=Encephalitozoon cuniculi (strain GB-M1) GN=LSM2 PE=3
SV=1
Length = 94
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
+L E IGSR+ +++K + G L G D ++N+ L DV S P
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHP 50
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 55
+L E IGSR+ +++K + G L G D ++N+ L DV
Sbjct: 1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDV 43
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,102,614
Number of Sequences: 539616
Number of extensions: 3217623
Number of successful extensions: 8411
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 8254
Number of HSP's gapped (non-prelim): 208
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)