Query psy800
Match_columns 204
No_of_seqs 296 out of 2005
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 00:16:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_A U6 snRNA-associated SM- 99.9 3.5E-22 1.2E-26 149.3 10.4 75 113-189 16-90 (94)
2 1mgq_A SM-like protein; LSM, R 99.9 5.8E-22 2E-26 144.5 10.6 77 109-188 7-83 (83)
3 1ljo_A Archaeal SM-like protei 99.9 1.5E-21 5.3E-26 140.1 10.3 73 115-190 3-76 (77)
4 1h64_1 SnRNP SM-like protein; 99.9 1.6E-21 5.6E-26 139.2 10.1 71 116-189 3-73 (75)
5 1th7_A SnRNP-2, small nuclear 99.9 1.1E-21 3.6E-26 142.3 9.2 76 112-190 4-79 (81)
6 1i4k_A Putative snRNP SM-like 99.9 2.2E-21 7.6E-26 139.0 10.1 72 116-190 3-74 (77)
7 3s6n_F Small nuclear ribonucle 99.9 2.8E-21 9.5E-26 142.0 10.5 75 115-192 4-78 (86)
8 4emk_B U6 snRNA-associated SM- 99.9 1.1E-21 3.8E-26 140.4 8.0 71 116-189 3-73 (75)
9 1i8f_A Putative snRNP SM-like 99.9 1.9E-21 6.6E-26 141.0 8.9 75 112-190 6-80 (81)
10 1n9r_A SMF, small nuclear ribo 99.8 1.9E-21 6.6E-26 144.9 8.5 76 111-189 15-91 (93)
11 3bw1_A SMX4 protein, U6 snRNA- 99.8 4.4E-21 1.5E-25 143.5 10.3 76 115-190 8-87 (96)
12 4emg_A Probable U6 snRNA-assoc 99.8 5.1E-21 1.7E-25 142.5 9.5 76 114-189 6-91 (93)
13 1d3b_A Protein (small nuclear 99.8 7.8E-21 2.7E-25 136.2 9.6 71 116-189 4-74 (75)
14 2fwk_A U6 snRNA-associated SM- 99.8 2E-21 6.7E-26 151.1 6.9 79 111-189 22-112 (121)
15 3s6n_E Small nuclear ribonucle 99.8 3.5E-21 1.2E-25 143.3 7.0 75 113-189 12-90 (92)
16 4emh_A Probable U6 snRNA-assoc 99.8 1.3E-20 4.4E-25 143.4 8.7 74 115-190 14-87 (105)
17 3s6n_G Small nuclear ribonucle 99.8 3E-20 1E-24 133.3 7.8 70 118-190 5-74 (76)
18 4emk_C U6 snRNA-associated SM- 99.8 4.7E-20 1.6E-24 142.0 8.7 79 114-192 20-102 (113)
19 1d3b_B Protein (small nuclear 99.8 5.6E-20 1.9E-24 135.7 7.3 73 117-189 4-83 (91)
20 1b34_A Protein (small nuclear 99.8 1.1E-19 3.6E-24 141.0 9.0 72 116-190 1-72 (119)
21 1b34_B Protein (small nuclear 99.8 1.3E-19 4.3E-24 140.3 8.4 77 114-190 24-113 (118)
22 1mgq_A SM-like protein; LSM, R 99.8 8.4E-19 2.9E-23 127.7 8.6 71 4-74 5-75 (83)
23 2y9a_D Small nuclear ribonucle 99.8 1.9E-18 6.4E-23 135.4 9.4 72 116-190 4-75 (126)
24 4emk_A U6 snRNA-associated SM- 99.7 2.6E-18 8.8E-23 128.3 8.2 66 9-74 15-81 (94)
25 3pgw_B SM B; protein-RNA compl 99.7 3.7E-18 1.3E-22 145.3 10.0 73 117-189 4-83 (231)
26 1n9r_A SMF, small nuclear ribo 99.7 1.8E-18 6.2E-23 128.8 5.9 74 1-74 8-82 (93)
27 4emk_B U6 snRNA-associated SM- 99.7 7.3E-18 2.5E-22 120.4 7.5 71 13-84 3-73 (75)
28 1th7_A SnRNP-2, small nuclear 99.7 8.8E-18 3E-22 121.6 7.9 68 7-74 2-69 (81)
29 1i8f_A Putative snRNP SM-like 99.7 7E-18 2.4E-22 122.2 7.2 68 6-74 3-70 (81)
30 3s6n_F Small nuclear ribonucle 99.7 1.9E-17 6.6E-22 121.5 7.7 63 12-74 4-66 (86)
31 1ljo_A Archaeal SM-like protei 99.7 2.7E-17 9.3E-22 117.8 8.3 63 12-74 3-66 (77)
32 1h64_1 SnRNP SM-like protein; 99.7 2.5E-17 8.5E-22 117.4 7.9 62 13-74 3-64 (75)
33 3s6n_E Small nuclear ribonucle 99.7 8.8E-18 3E-22 124.9 5.3 75 8-83 10-89 (92)
34 1d3b_A Protein (small nuclear 99.7 3.3E-17 1.1E-21 117.2 7.2 63 12-74 3-65 (75)
35 4emg_A Probable U6 snRNA-assoc 99.7 3.5E-17 1.2E-21 121.8 7.4 65 10-74 5-82 (93)
36 1i4k_A Putative snRNP SM-like 99.7 4.5E-17 1.5E-21 116.5 7.1 62 13-74 3-64 (77)
37 3s6n_G Small nuclear ribonucle 99.7 4.9E-17 1.7E-21 116.5 6.9 71 14-85 4-74 (76)
38 1m5q_A SMAP3, small nuclear ri 99.7 5.4E-17 1.8E-21 127.7 7.2 65 119-190 2-66 (130)
39 2fwk_A U6 snRNA-associated SM- 99.7 4.2E-17 1.4E-21 126.6 5.9 67 8-74 22-103 (121)
40 3bw1_A SMX4 protein, U6 snRNA- 99.7 9.1E-17 3.1E-21 120.0 7.3 64 11-74 7-77 (96)
41 4emk_C U6 snRNA-associated SM- 99.6 2.3E-16 7.7E-21 121.4 6.4 77 8-85 17-100 (113)
42 1d3b_B Protein (small nuclear 99.6 2.5E-16 8.7E-21 116.0 4.2 62 13-74 3-74 (91)
43 1b34_A Protein (small nuclear 99.6 9.1E-16 3.1E-20 118.8 7.1 61 14-74 2-62 (119)
44 4emh_A Probable U6 snRNA-assoc 99.6 6.1E-16 2.1E-20 117.6 5.9 65 10-74 12-77 (105)
45 1b34_B Protein (small nuclear 99.6 2.8E-15 9.6E-20 115.8 7.2 67 8-74 21-103 (118)
46 2y9a_D Small nuclear ribonucle 99.6 3.7E-15 1.3E-19 116.6 7.2 62 12-73 3-64 (126)
47 3pgw_B SM B; protein-RNA compl 99.6 7.7E-15 2.6E-19 124.8 8.3 60 13-72 3-72 (231)
48 1m5q_A SMAP3, small nuclear ri 99.4 4.7E-13 1.6E-17 105.2 5.8 55 16-74 2-56 (130)
49 1y96_A Gemin6, SIP2, GEM-assoc 98.3 2.8E-06 9.4E-11 62.1 7.6 62 117-188 8-70 (86)
50 1y96_A Gemin6, SIP2, GEM-assoc 98.0 1.5E-05 5.2E-10 58.2 6.5 42 13-55 7-49 (86)
51 1u1s_A HFQ protein; SM-like ba 96.6 0.0031 1E-07 45.5 4.9 34 121-154 11-46 (82)
52 2ylb_A Protein HFQ; RNA-bindin 96.6 0.0033 1.1E-07 44.5 4.9 54 120-189 12-67 (74)
53 3sb2_A Protein HFQ; SM-like, R 96.3 0.0057 2E-07 43.8 4.9 53 121-189 12-66 (79)
54 2y90_A Protein HFQ; RNA-bindin 96.3 0.0041 1.4E-07 46.7 4.2 34 121-154 13-48 (104)
55 1kq1_A HFQ, HOST factor for Q 96.3 0.0071 2.4E-07 43.1 5.3 37 16-53 9-47 (77)
56 1u1s_A HFQ protein; SM-like ba 96.3 0.006 2E-07 44.0 4.9 37 16-53 9-47 (82)
57 2ylb_A Protein HFQ; RNA-bindin 96.2 0.0065 2.2E-07 42.9 4.9 40 13-53 8-49 (74)
58 3ahu_A Protein HFQ; SM-like mo 96.1 0.0093 3.2E-07 42.6 5.0 34 121-154 15-50 (78)
59 3sb2_A Protein HFQ; SM-like, R 96.0 0.0089 3E-07 42.8 4.9 37 15-52 9-47 (79)
60 2qtx_A Uncharacterized protein 96.0 0.0081 2.8E-07 42.2 4.6 29 24-53 25-53 (71)
61 2qtx_A Uncharacterized protein 96.0 0.011 3.7E-07 41.6 4.9 28 127-154 25-52 (71)
62 1kq1_A HFQ, HOST factor for Q 95.9 0.013 4.6E-07 41.6 5.4 34 121-154 11-46 (77)
63 2y90_A Protein HFQ; RNA-bindin 95.9 0.0075 2.6E-07 45.3 4.2 40 13-53 8-49 (104)
64 3ahu_A Protein HFQ; SM-like mo 95.9 0.0085 2.9E-07 42.8 4.3 37 16-53 13-51 (78)
65 3hfo_A SSR3341 protein; HFQ, S 94.7 0.089 3E-06 36.7 6.3 42 115-157 6-50 (70)
66 3hfn_A ASL2047 protein; HFQ, S 94.4 0.12 4E-06 36.3 6.3 60 115-188 8-70 (72)
67 2vxe_A CG10686-PA; EDC3, CAR-1 94.1 0.34 1.2E-05 35.2 8.4 63 125-189 11-82 (88)
68 1ycy_A Conserved hypothetical 92.1 0.77 2.6E-05 31.5 7.2 59 120-186 9-67 (71)
69 2fb7_A SM-like protein, LSM-14 91.6 0.37 1.3E-05 35.4 5.6 65 123-189 15-88 (95)
70 1y96_B Gemin7, SIP3, GEM-assoc 91.5 0.63 2.1E-05 33.5 6.6 63 118-188 20-83 (85)
71 3hfn_A ASL2047 protein; HFQ, S 90.5 0.45 1.5E-05 33.3 5.0 45 10-55 6-53 (72)
72 4a53_A EDC3; RNA binding prote 90.5 0.37 1.3E-05 37.0 4.9 37 122-159 7-45 (125)
73 3hfo_A SSR3341 protein; HFQ, S 89.5 0.68 2.3E-05 32.2 5.2 42 12-54 6-50 (70)
74 1ycy_A Conserved hypothetical 89.4 0.56 1.9E-05 32.2 4.5 44 16-60 8-51 (71)
75 2vc8_A Enhancer of mRNA-decapp 83.6 3.1 0.00011 29.8 6.1 57 124-186 6-64 (84)
76 4a53_A EDC3; RNA binding prote 79.0 2.4 8.3E-05 32.5 4.4 36 19-55 7-44 (125)
77 3rux_A BIRA bifunctional prote 73.0 3.6 0.00012 34.9 4.4 33 126-158 223-255 (270)
78 1ib8_A Conserved protein SP14. 71.3 2.9 9.9E-05 33.1 3.2 36 115-150 89-131 (164)
79 1ib8_A Conserved protein SP14. 68.7 3 0.0001 33.0 2.8 39 9-47 86-131 (164)
80 2eay_A Biotin [acetyl-COA-carb 68.4 4.2 0.00014 33.6 3.7 30 126-157 187-216 (233)
81 2xk0_A Polycomb protein PCL; t 67.8 6.5 0.00022 27.1 3.9 30 19-48 14-43 (69)
82 2xk0_A Polycomb protein PCL; t 67.2 6.2 0.00021 27.2 3.7 40 125-164 17-57 (69)
83 2vc8_A Enhancer of mRNA-decapp 66.2 7.3 0.00025 27.9 4.1 37 20-56 5-43 (84)
84 1y96_B Gemin7, SIP3, GEM-assoc 65.5 11 0.00038 26.9 5.0 40 16-55 21-61 (85)
85 1bia_A BIRA bifunctional prote 64.3 13 0.00045 31.9 6.2 47 126-180 272-318 (321)
86 2ej9_A Putative biotin ligase; 62.9 16 0.00056 30.0 6.4 31 126-157 191-221 (237)
87 2vxe_A CG10686-PA; EDC3, CAR-1 57.1 12 0.00041 26.9 3.9 59 21-91 10-69 (88)
88 2dxu_A Biotin--[acetyl-COA-car 56.6 7.7 0.00026 32.1 3.2 30 126-157 188-217 (235)
89 2fb7_A SM-like protein, LSM-14 54.6 11 0.00036 27.6 3.3 65 15-91 10-75 (95)
90 3rux_A BIRA bifunctional prote 48.3 14 0.00049 31.1 3.7 31 24-54 224-254 (270)
91 2e12_A SM-like motif, hypothet 40.7 17 0.00058 26.4 2.5 26 119-144 18-45 (101)
92 3rkx_A Biotin-[acetyl-COA-carb 35.7 32 0.0011 29.6 4.0 31 126-157 278-308 (323)
93 4hcz_A PHD finger protein 1; p 35.0 40 0.0014 22.4 3.4 38 126-163 6-46 (58)
94 3bfm_A Biotin protein ligase-l 33.2 47 0.0016 27.0 4.5 27 126-157 193-219 (235)
95 2rm4_A CG6311-PB, DM EDC3; enh 31.7 90 0.0031 22.8 5.1 58 123-186 8-67 (103)
96 2rm4_A CG6311-PB, DM EDC3; enh 29.5 1E+02 0.0035 22.5 5.1 36 21-57 9-45 (103)
97 4hcz_A PHD finger protein 1; p 27.7 58 0.002 21.6 3.2 24 24-47 7-30 (58)
98 3fb9_A Uncharacterized protein 27.4 77 0.0026 22.7 4.1 27 121-147 19-49 (90)
99 2ej9_A Putative biotin ligase; 23.6 89 0.0031 25.4 4.5 31 23-54 191-221 (237)
100 2m0o_A PHD finger protein 1; t 23.3 86 0.003 21.9 3.6 39 125-163 28-69 (79)
101 2e12_A SM-like motif, hypothet 20.6 59 0.002 23.5 2.4 27 16-42 18-46 (101)
No 1
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.87 E-value=3.5e-22 Score=149.33 Aligned_cols=75 Identities=52% Similarity=0.873 Sum_probs=66.5
Q ss_pred CCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEccc
Q psy800 113 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 113 ~~~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
.....|+++|.++++++|+|+|++|++|+|+|+|||+||||||+||+|+.. +++..+.+|.++|||+||++|++.
T Consensus 16 ~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~--~~~~~~~lg~v~IRG~nI~~i~p~ 90 (94)
T 4emk_A 16 SMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDT--VTGVTEKHSEMLLNGNGMCMLIPG 90 (94)
T ss_dssp ----CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEET--TTCCEEEEEEEEECSTTEEEEEEC
T ss_pred cccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEec--CCCcEeEcCEEEEcCCEEEEEEeC
Confidence 346789999999999999999999999999999999999999999999973 334688999999999999999876
No 2
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.87 E-value=5.8e-22 Score=144.47 Aligned_cols=77 Identities=29% Similarity=0.532 Sum_probs=68.6
Q ss_pred ccCCCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcc
Q psy800 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGL 188 (204)
Q Consensus 109 ~~~~~~~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~ 188 (204)
|+.......|+++|.++++++|+|+|+||+++.|+|.|||+|||++|+||+|++ .+...+.+|.++|||++|++|+|
T Consensus 7 s~~~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 7 SSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp ---CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEC
T ss_pred ccccccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEe---cCCcccCCCEEEECCCEEEEEEC
Confidence 344556789999999999999999999999999999999999999999999997 34578899999999999999975
No 3
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.86 E-value=1.5e-21 Score=140.08 Aligned_cols=73 Identities=30% Similarity=0.645 Sum_probs=67.1
Q ss_pred CCCcHHHHHhhcCCEEEEEEeCC-eEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 115 TLLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 115 ~~~Pl~~L~~~i~k~V~V~Lk~g-r~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
...|+++|.++++++|+|+|++| ++++|+|.|||+|||++|+||+|++ .++..+.+|.++|||++|++|++.+
T Consensus 3 m~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 3 MVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECK---GEEKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp CCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred ccchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEe---cCCcEeECCeEEEeCCeEEEEEeCC
Confidence 35899999999999999999999 9999999999999999999999987 3457899999999999999998753
No 4
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.86 E-value=1.6e-21 Score=139.21 Aligned_cols=71 Identities=23% Similarity=0.516 Sum_probs=66.4
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEccc
Q psy800 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 116 ~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
..|+++|+++++++|+|+|+||+.++|+|.|||+|||++|+||+|++ .+...+.+|.++|||++|++|++.
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~iRG~~I~~i~~~ 73 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQ---DGEVVKRYGKIVIRGDNVLAISPT 73 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEEC
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEe---eCCceeECCEEEECCCEEEEEEeC
Confidence 47999999999999999999999999999999999999999999987 245789999999999999999875
No 5
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.86 E-value=1.1e-21 Score=142.30 Aligned_cols=76 Identities=22% Similarity=0.408 Sum_probs=68.3
Q ss_pred CCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 112 ~~~~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
...+..|+++|+++++++|+|+|+||+++.|+|.|||+|||++|+||+|++. +...+.+|.++|||++|++|++.+
T Consensus 4 ~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~---~~~~~~lg~v~iRG~~I~~i~~~~ 79 (81)
T 1th7_A 4 NFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQS---DGSGKKLGTIVIRGDNVILISPLQ 79 (81)
T ss_dssp CTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECS---SSCEEEEEEEEECGGGEEEEEEC-
T ss_pred cccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEec---CCceeECCEEEECCCEEEEEEecC
Confidence 3445789999999999999999999999999999999999999999999873 346789999999999999998763
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.86 E-value=2.2e-21 Score=139.04 Aligned_cols=72 Identities=24% Similarity=0.549 Sum_probs=66.9
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 116 ~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
..|+++|+++++++|+|+|+||+.+.|+|.|||+|||++|+||+|++. +...+++|.++|||++|++|++.+
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~---~~~~~~lg~v~iRG~~I~~i~~~d 74 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQN---GEVVRKVGSVVIRGDTVVFVSPAP 74 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET---TEEEEEEEEEEECGGGEEEEEECC
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEec---CCcEeECCEEEECCCEEEEEEeCC
Confidence 479999999999999999999999999999999999999999999872 356889999999999999998764
No 7
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.85 E-value=2.8e-21 Score=142.02 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=67.9
Q ss_pred CCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEccccCC
Q psy800 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHTHC 192 (204)
Q Consensus 115 ~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~~~ 192 (204)
+..|+++|+++++++|+|+|++|+.|.|+|.|||+|||++|+||+|+. +++..+++|.++|||++|++|++.+..
T Consensus 4 ~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~---~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 4 PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI---DGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp CCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEESSEEECGGGEEEEEECC--
T ss_pred CcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc---CCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 467999999999999999999999999999999999999999999975 455678999999999999999887543
No 8
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.85 E-value=1.1e-21 Score=140.38 Aligned_cols=71 Identities=25% Similarity=0.506 Sum_probs=66.5
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEccc
Q psy800 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 116 ~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
..|+++|+++++++|+|+|+||++|.|+|.|||+|||++|+||+|+. +++..+++|.++|||++|++|++.
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~iRG~~I~~i~~~ 73 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV---NGKKTNVYGDAFIRGNNVLYVSAL 73 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEE---TTEEEEEEEEEEEEGGGSSEEEEC
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEe---cCCcccEecEEEEcCCeEEEEEec
Confidence 57999999999999999999999999999999999999999999986 455688999999999999999875
No 9
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.85 E-value=1.9e-21 Score=141.01 Aligned_cols=75 Identities=24% Similarity=0.407 Sum_probs=66.3
Q ss_pred CCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 112 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 112 ~~~~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
.+....|+++|.++++++|+|+|+||++|.|+|.|||+|||++|+||+|+ ++...+.+|.++|||++|++|++.+
T Consensus 6 ~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~----~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 6 SKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI----IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp ----CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE----ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred CccccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE----cCCcccCCCEEEECCCEEEEEEeCC
Confidence 44568899999999999999999999999999999999999999999998 2346899999999999999998763
No 10
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.85 E-value=1.9e-21 Score=144.94 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=61.3
Q ss_pred CCCCCCCcHHHHHhhcCCEEEEEEeCC-eEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEccc
Q psy800 111 TNPSTLLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 111 ~~~~~~~Pl~~L~~~i~k~V~V~Lk~g-r~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
+..+...|+++|.++++++|+|+|++| ++|+|+|.|||+|||++|+||+|++ +++..+.+|.++|||++|++|.+.
T Consensus 15 ~~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~---~~~~~~~lg~v~IRG~nI~~I~~~ 91 (93)
T 1n9r_A 15 SAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV---AGVSHGTLGEIFIRCNNVLYIREL 91 (93)
T ss_dssp -----------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEE---TTEEEEECCSEEECGGGEEEEEEC
T ss_pred cccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEc---CCCeEeEcCEEEEcCCeEEEEEeC
Confidence 455678899999999999999999999 9999999999999999999999986 455788999999999999999865
No 11
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.4e-21 Score=143.53 Aligned_cols=76 Identities=22% Similarity=0.461 Sum_probs=68.6
Q ss_pred CCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCC----CeeeeeeCeEEEeCCcEEEEcccc
Q psy800 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE----GRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 115 ~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~----~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
.+.|+.+|.++++++|+|+|++||++.|+|+|||+||||||+||+|++...+ +...+.+|.++|||++|++|++.+
T Consensus 8 ~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d 87 (96)
T 3bw1_A 8 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPS 87 (96)
T ss_dssp CCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC
T ss_pred hhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecC
Confidence 4679999999999999999999999999999999999999999999986421 346789999999999999998764
No 12
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.84 E-value=5.1e-21 Score=142.54 Aligned_cols=76 Identities=21% Similarity=0.443 Sum_probs=65.5
Q ss_pred CCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecC--CC--------eeeeeeCeEEEeCCcE
Q psy800 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP--EG--------RRITKLDQILLNGNNI 183 (204)
Q Consensus 114 ~~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~--~~--------~~~~~lg~ilIRGdnI 183 (204)
+...|+++|+.+++++|+|+|++|+.|.|+|+|||+||||+|+||+|++... ++ ...+.+|.++|||++|
T Consensus 6 ~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nV 85 (93)
T 4emg_A 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSV 85 (93)
T ss_dssp ---CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGE
T ss_pred ccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeE
Confidence 4578999999999999999999999999999999999999999999998531 12 2478999999999999
Q ss_pred EEEccc
Q psy800 184 TMLGLH 189 (204)
Q Consensus 184 ~~I~~~ 189 (204)
++|+|.
T Consensus 86 v~I~p~ 91 (93)
T 4emg_A 86 ILIAPP 91 (93)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 999985
No 13
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.84 E-value=7.8e-21 Score=136.17 Aligned_cols=71 Identities=21% Similarity=0.358 Sum_probs=65.7
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEccc
Q psy800 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 116 ~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
..|+++|+++++++|+|+|++|++|+|+|.|||+|||++|+||+|+. .++ ..+++|.++|||++|.+|+..
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~--~~~-~~~~lg~v~IRG~nI~~i~lP 74 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTY--RDG-RVAQLEQVYIRGCKIRFLILP 74 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC--TTS-CEEEEEEEEECGGGEEEEEEC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEEC--CCC-cEEEcCeEEEeCCEEEEEEcC
Confidence 57999999999999999999999999999999999999999999986 344 578999999999999999764
No 14
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.84 E-value=2e-21 Score=151.12 Aligned_cols=79 Identities=48% Similarity=0.882 Sum_probs=67.4
Q ss_pred CCCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeec-------CCCee-----eeeeCeEEE
Q psy800 111 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST-------PEGRR-----ITKLDQILL 178 (204)
Q Consensus 111 ~~~~~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~-------~~~~~-----~~~lg~ilI 178 (204)
+.+....|+++|.++++++|+|+|++|++|.|+|+|||+||||||+||+|++.. .+++. .+.+|.++|
T Consensus 22 ~~~~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~I 101 (121)
T 2fwk_A 22 KGGNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILL 101 (121)
T ss_dssp --CCCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEE
T ss_pred ccccccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEE
Confidence 445678999999999999999999999999999999999999999999999853 02333 688999999
Q ss_pred eCCcEEEEccc
Q psy800 179 NGNNITMLGLH 189 (204)
Q Consensus 179 RGdnI~~I~~~ 189 (204)
||++|++|++.
T Consensus 102 RG~nVv~I~~~ 112 (121)
T 2fwk_A 102 SGNNVAMLVPG 112 (121)
T ss_dssp CGGGEEEEESS
T ss_pred CCCEEEEEEec
Confidence 99999999876
No 15
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.84 E-value=3.5e-21 Score=143.34 Aligned_cols=75 Identities=29% Similarity=0.558 Sum_probs=64.6
Q ss_pred CCCCCcHHHHHhhcCCEEEEEE----eCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcc
Q psy800 113 PSTLLPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGL 188 (204)
Q Consensus 113 ~~~~~Pl~~L~~~i~k~V~V~L----k~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~ 188 (204)
+....|+++|.++++++|.|++ ++|++|+|+|+|||+||||||+||+|+.. +++..+.+|.++|||+||++|++
T Consensus 12 ~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~--~~~~~~~lg~v~iRG~nV~~i~~ 89 (92)
T 3s6n_E 12 KVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS--KTKSRKQLGRIMLKGDNITLLQS 89 (92)
T ss_dssp --CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECS--SSCCEEEEEEEEECGGGEEEEEE
T ss_pred eeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEec--CCCceeEcCeEEEeCCEEEEEEe
Confidence 3456788888888888888777 89999999999999999999999999874 33467899999999999999987
Q ss_pred c
Q psy800 189 H 189 (204)
Q Consensus 189 ~ 189 (204)
.
T Consensus 90 ~ 90 (92)
T 3s6n_E 90 V 90 (92)
T ss_dssp C
T ss_pred C
Confidence 6
No 16
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.3e-20 Score=143.45 Aligned_cols=74 Identities=30% Similarity=0.588 Sum_probs=56.2
Q ss_pred CCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 115 ~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
+..|+++|+++++++|+|+|++|++|+|+|.|||+||||+|+||+|.. .+|+..+.+|.++|||++|++|++.+
T Consensus 14 ~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~--~dg~~~~~lg~v~IRG~nI~~I~~pd 87 (105)
T 4emh_A 14 PMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTM--PDGDKFFRLPECYIRGNNIKYLRIQD 87 (105)
T ss_dssp ------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC--TTSCEEEEEEEEEECGGGEEEEEC--
T ss_pred CCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEc--cCCceeeEcCeEEEeCCeEEEEecCH
Confidence 468999999999999999999999999999999999999999999986 35656789999999999999998764
No 17
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.81 E-value=3e-20 Score=133.27 Aligned_cols=70 Identities=20% Similarity=0.489 Sum_probs=52.5
Q ss_pred cHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 118 Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
|-.+|+++++++|+|+|+||+.|+|+|.|||+|||++|+||+|+.. + ...+.+|.++|||++|++|++.+
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~--~-~~~~~lg~v~iRG~~I~~i~~~d 74 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMAT--S-GQQNNIGMVVIRGNSIIMLEALE 74 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCC--C-----CBSSEEECSSSEEEEEC--
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEcc--C-CcEeEcCEEEECCCeEEEEEecc
Confidence 4568999999999999999999999999999999999999999863 2 35789999999999999998753
No 18
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.81 E-value=4.7e-20 Score=141.96 Aligned_cols=79 Identities=24% Similarity=0.455 Sum_probs=57.3
Q ss_pred CCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCC----eeeeeeCeEEEeCCcEEEEccc
Q psy800 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEG----RRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 114 ~~~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~----~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
+..-|+..|.++++++|+|+|+|||.|.|+|+|||+||||||+||+|++...++ ...+.+|.++|||++|++|++.
T Consensus 20 ~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~ 99 (113)
T 4emk_C 20 PRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPM 99 (113)
T ss_dssp ------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEEC
T ss_pred CccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEec
Confidence 334577889999999999999999999999999999999999999999854322 3578999999999999999987
Q ss_pred cCC
Q psy800 190 THC 192 (204)
Q Consensus 190 ~~~ 192 (204)
+..
T Consensus 100 d~~ 102 (113)
T 4emk_C 100 DGS 102 (113)
T ss_dssp C--
T ss_pred Ccc
Confidence 543
No 19
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.80 E-value=5.6e-20 Score=135.69 Aligned_cols=73 Identities=23% Similarity=0.419 Sum_probs=62.8
Q ss_pred CcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeec--C-----CCeeeeeeCeEEEeCCcEEEEccc
Q psy800 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYEST--P-----EGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 117 ~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~--~-----~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
.|...|.++++++|+|+|+||+.+.|+|.|||+||||||+||+|++.. . ++...+.+|.++|||++|++|++.
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~ 83 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcC
Confidence 355689999999999999999999999999999999999999997531 1 234688999999999999999876
No 20
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.80 E-value=1.1e-19 Score=141.01 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=65.2
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 116 ~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
+.|+++|+++++++|+|+|++|++|.|+|.|||+||||+|+||+|+. .+ .....+|.++|||+||++|++.+
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~--~~-~~~~~lg~v~IRG~nI~~I~~pd 72 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTL--KN-REPVQLETLSIRGNNIRYFILPD 72 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEEC--TT-SCCEEEEEEEECGGGEEEEECCT
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEec--CC-CceeEcceEEEcCCeEEEEEecc
Confidence 37999999999999999999999999999999999999999999985 23 35689999999999999998764
No 21
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.79 E-value=1.3e-19 Score=140.27 Aligned_cols=77 Identities=22% Similarity=0.456 Sum_probs=63.3
Q ss_pred CCCCcHHHHHhhc--CCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecC--C--C-------eeeeeeCeEEEeC
Q psy800 114 STLLPLELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP--E--G-------RRITKLDQILLNG 180 (204)
Q Consensus 114 ~~~~Pl~~L~~~i--~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~--~--~-------~~~~~lg~ilIRG 180 (204)
....|+++|.+++ +++|+|+|++|+.|.|+|+|||+||||||+||+|++... + + +..+.+|.++|||
T Consensus 24 ~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG 103 (118)
T 1b34_B 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRG 103 (118)
T ss_dssp --CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECG
T ss_pred cccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcC
Confidence 3568999999999 599999999999999999999999999999999987431 1 1 1256799999999
Q ss_pred CcEEEEcccc
Q psy800 181 NNITMLGLHT 190 (204)
Q Consensus 181 dnI~~I~~~~ 190 (204)
++|++|++.+
T Consensus 104 ~nVv~I~~~~ 113 (118)
T 1b34_B 104 DSVIVVLRNP 113 (118)
T ss_dssp GGEEEEEECC
T ss_pred CEEEEEEeCc
Confidence 9999998764
No 22
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.77 E-value=8.4e-19 Score=127.69 Aligned_cols=71 Identities=24% Similarity=0.388 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 4 PSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 4 ~~~~~~~~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
+|+.+.++...|+++|+++++++|.|+|+||++|.|+|.|||+|||++|+||+|+..++....+|.++|+.
T Consensus 5 ~ms~~~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG 75 (83)
T 1mgq_A 5 DVSSQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRG 75 (83)
T ss_dssp -----CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECG
T ss_pred EcccccccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECC
Confidence 35567888899999999999999999999999999999999999999999999999888888999999955
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.76 E-value=1.9e-18 Score=135.36 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=65.8
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 116 ~~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
..|+++|+++++++|+|+|++|++|.|+|.+||+|||++|+||+|+. .++ +...++.++|||++|.+|...+
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~--~~g-~~~~l~~v~IRGnnI~~I~lpd 75 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTY--RDG-RVAQLEQVYIRGSKIRFLILPD 75 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEEC--TTS-CCEEEEEEEECGGGEEEEECCS
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEc--CCC-cEeecccEEEeCCEEEEEEccc
Confidence 57999999999999999999999999999999999999999999985 344 4789999999999999997543
No 24
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.75 E-value=2.6e-18 Score=128.33 Aligned_cols=66 Identities=47% Similarity=0.792 Sum_probs=58.2
Q ss_pred CCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEee-cCccccccccEEEee
Q psy800 9 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH-DSHLLSYFASDLINF 74 (204)
Q Consensus 9 ~~~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~-~~~~~~~lG~vlIn~ 74 (204)
......|+++|+++++++|+|+|++|++|.|+|+|||+||||+|+||+|+. +++..+.+|.++|+.
T Consensus 15 ~~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG 81 (94)
T 4emk_A 15 MSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNG 81 (94)
T ss_dssp -----CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECS
T ss_pred ccccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcC
Confidence 356789999999999999999999999999999999999999999999999 777788999999965
No 25
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.75 E-value=3.7e-18 Score=145.26 Aligned_cols=73 Identities=23% Similarity=0.422 Sum_probs=64.5
Q ss_pred CcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEee-c-C-----CCeeeeeeCeEEEeCCcEEEEccc
Q psy800 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES-T-P-----EGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 117 ~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~-~-~-----~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
.+-..|.+++||+|+|+|+|||+|+|+|+|||+||||||+||+|++. + + ++++.+++|.++||||||++|+..
T Consensus 4 ~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve 83 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (231)
T ss_pred CchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEec
Confidence 45568999999999999999999999999999999999999999874 1 1 234689999999999999999855
No 26
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.74 E-value=1.8e-18 Score=128.82 Aligned_cols=74 Identities=18% Similarity=0.257 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCCcHHHHHhhcCCEEEEEEeCC-eEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 1 ~~~~~~~~~~~~~~P~~~L~~~~~k~V~V~l~~g-~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
||....++..+...|+++|+++++++|.|+|+|| ++|.|+|.|||+|||++|+||+|+.+++....+|.++|+.
T Consensus 8 ~~~~~~~~~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG 82 (93)
T 1n9r_A 8 MSESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRC 82 (93)
T ss_dssp ------------------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECG
T ss_pred cccCccccccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcC
Confidence 5666777788889999999999999999999999 9999999999999999999999999888888999999955
No 27
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.73 E-value=7.3e-18 Score=120.45 Aligned_cols=71 Identities=18% Similarity=0.368 Sum_probs=62.9
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEeeecccceeecc
Q psy800 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINFIWGLPMITPI 84 (204)
Q Consensus 13 ~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~~~g~~~~~PI 84 (204)
..|+++|+++++|+|.|+|+||++|.|+|.|||+|||++|+||+|+.+++....+|.++|+.- .+..+.|+
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~-~I~~i~~~ 73 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGN-NVLYVSAL 73 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGG-GSSEEEEC
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCC-eEEEEEec
Confidence 579999999999999999999999999999999999999999999998888889999999763 33444443
No 28
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.72 E-value=8.8e-18 Score=121.57 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=62.7
Q ss_pred CCCCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 7 ATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 7 ~~~~~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
+++.....|+++|+++++++|+|+|+||++|.|+|.|||+|||++|+||+|+..++....+|.++|+.
T Consensus 2 ~m~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 69 (81)
T 1th7_A 2 AMNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRG 69 (81)
T ss_dssp CCCTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECG
T ss_pred cccccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECC
Confidence 44566689999999999999999999999999999999999999999999999888888999999955
No 29
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.72 E-value=7e-18 Score=122.18 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=58.2
Q ss_pred CCCCCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 6 ~~~~~~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
+.+++....|+++|.++++++|.|+|+||++|.|+|.|||+|||++|+||+|+ +++..+.+|.++|+.
T Consensus 3 ~~~~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG 70 (81)
T 1i8f_A 3 SDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRG 70 (81)
T ss_dssp -------CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECG
T ss_pred cccCccccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECC
Confidence 45567788999999999999999999999999999999999999999999999 777788999999955
No 30
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.71 E-value=1.9e-17 Score=121.46 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=59.4
Q ss_pred CCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 12 ~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
...|+++|+++++++|.|+|+||++|.|+|.|||+|||++|+||+|+.+++....+|.++|+.
T Consensus 4 ~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG 66 (86)
T 3s6n_F 4 PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRC 66 (86)
T ss_dssp CCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECG
T ss_pred CcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeC
Confidence 568999999999999999999999999999999999999999999999887778899999955
No 31
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.71 E-value=2.7e-17 Score=117.85 Aligned_cols=63 Identities=25% Similarity=0.569 Sum_probs=59.5
Q ss_pred CCCcHHHHHhhcCCEEEEEEeCC-eEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 12 TLLPLELVDKCIGSRIHIIMKND-KEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 12 ~~~P~~~L~~~~~k~V~V~l~~g-~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
+..|+++|.++++++|+|+|++| ++|.|+|.|||+|||++|+||+|+.+++....+|.++|+.
T Consensus 3 m~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 66 (77)
T 1ljo_A 3 MVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRG 66 (77)
T ss_dssp CCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECG
T ss_pred ccchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeC
Confidence 35899999999999999999999 9999999999999999999999999888888999999955
No 32
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.71 E-value=2.5e-17 Score=117.40 Aligned_cols=62 Identities=23% Similarity=0.430 Sum_probs=58.9
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 13 ~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
..|+++|+++++++|+|+|+||++|.|+|.|||+|||++|+||+|+..+.....+|.++|+.
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 64 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRG 64 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECG
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECC
Confidence 47999999999999999999999999999999999999999999999888888999999955
No 33
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.70 E-value=8.8e-18 Score=124.93 Aligned_cols=75 Identities=17% Similarity=0.403 Sum_probs=62.0
Q ss_pred CCCCCCCcHHHHHhhcCCEEEEEE----eCCeEEEEEEEeecCeeeeEecceEEee-cCccccccccEEEeeecccceee
Q psy800 8 TNPSTLLPLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTDCH-DSHLLSYFASDLINFIWGLPMIT 82 (204)
Q Consensus 8 ~~~~~~~P~~~L~~~~~k~V~V~l----~~g~~~~G~L~gfD~~mNlvL~~~~E~~-~~~~~~~lG~vlIn~~~g~~~~~ 82 (204)
.++.+..|+++|.++++++|.|++ ++|++|+|+|+|||+||||+|+||+|+. +++....+|.++|+.- .+..+.
T Consensus 10 ~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~-nV~~i~ 88 (92)
T 3s6n_E 10 VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGD-NITLLQ 88 (92)
T ss_dssp ----CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGG-GEEEEE
T ss_pred cceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCC-EEEEEE
Confidence 345689999999999999999999 9999999999999999999999999998 5667788999999653 334444
Q ss_pred c
Q psy800 83 P 83 (204)
Q Consensus 83 P 83 (204)
|
T Consensus 89 ~ 89 (92)
T 3s6n_E 89 S 89 (92)
T ss_dssp E
T ss_pred e
Confidence 4
No 34
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.69 E-value=3.3e-17 Score=117.20 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=58.0
Q ss_pred CCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 12 ~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
...|+++|+++++++|.|+|++|++|+|+|.|||+|||++|+||+|+..++....+|+++|+.
T Consensus 3 ~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG 65 (75)
T 1d3b_A 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRG 65 (75)
T ss_dssp -CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECG
T ss_pred ccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeC
Confidence 357999999999999999999999999999999999999999999998666688999999954
No 35
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.69 E-value=3.5e-17 Score=121.78 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=55.7
Q ss_pred CCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeec-----C--------ccccccccEEEee
Q psy800 10 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD-----S--------HLLSYFASDLINF 74 (204)
Q Consensus 10 ~~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~-----~--------~~~~~lG~vlIn~ 74 (204)
.....|+++|+.+++++|+|+|++|++|.|+|.|||+||||+|+||+|+.. + ...+.+|.++|+.
T Consensus 5 ~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG 82 (93)
T 4emg_A 5 QAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRG 82 (93)
T ss_dssp ----CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECG
T ss_pred cccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECC
Confidence 456799999999999999999999999999999999999999999999984 2 2467899999955
No 36
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.69 E-value=4.5e-17 Score=116.52 Aligned_cols=62 Identities=24% Similarity=0.465 Sum_probs=58.9
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 13 ~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
..|+++|+++++++|.|+|+||++|.|+|.|||+|||++|+||+|+..++..+.+|.++|+.
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG 64 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRG 64 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECG
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECC
Confidence 47999999999999999999999999999999999999999999999888888999999955
No 37
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.68 E-value=4.9e-17 Score=116.46 Aligned_cols=71 Identities=15% Similarity=0.337 Sum_probs=48.9
Q ss_pred CcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEeeecccceeeccc
Q psy800 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINFIWGLPMITPIT 85 (204)
Q Consensus 14 ~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~~~g~~~~~PI~ 85 (204)
.|.++|+++++++|+|+|+||++|.|+|.|||+|||++|+||+|+..++....+|.++|+.- .+....|+.
T Consensus 4 ~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~-~I~~i~~~d 74 (76)
T 3s6n_G 4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN-SIIMLEALE 74 (76)
T ss_dssp ----------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSS-SEEEEEC--
T ss_pred cchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCC-eEEEEEecc
Confidence 36789999999999999999999999999999999999999999987777889999999652 334454543
No 38
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.68 E-value=5.4e-17 Score=127.68 Aligned_cols=65 Identities=15% Similarity=0.403 Sum_probs=59.4
Q ss_pred HHHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcccc
Q psy800 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLHT 190 (204)
Q Consensus 119 l~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~~ 190 (204)
..+|++++|++|+|+|++|+.|.|+|.|||+|||++|+||+|.. + +.+|.++|||+||++|++.+
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~----~---~~lg~v~IRG~nI~~I~~~d 66 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA----G---EKFNRVFIMYRYIVHIDSTE 66 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT----C---CEEEEEEECGGGEEEEEECC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc----C---CEeceEEEeCCeEEEEEcCC
Confidence 35899999999999999999999999999999999999999962 2 68999999999999998764
No 39
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.67 E-value=4.2e-17 Score=126.62 Aligned_cols=67 Identities=42% Similarity=0.754 Sum_probs=57.7
Q ss_pred CCCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeec----------Ccc-----ccccccEEE
Q psy800 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD----------SHL-----LSYFASDLI 72 (204)
Q Consensus 8 ~~~~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~----------~~~-----~~~lG~vlI 72 (204)
+.+....|+++|.++++++|+|+|++|++|.|+|+|||+||||||+||+|+.. +.. .+.+|.++|
T Consensus 22 ~~~~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~I 101 (121)
T 2fwk_A 22 KGGNIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILL 101 (121)
T ss_dssp --CCCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEE
T ss_pred ccccccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEE
Confidence 45577899999999999999999999999999999999999999999999883 223 678999999
Q ss_pred ee
Q psy800 73 NF 74 (204)
Q Consensus 73 n~ 74 (204)
+.
T Consensus 102 RG 103 (121)
T 2fwk_A 102 SG 103 (121)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 40
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.1e-17 Score=120.04 Aligned_cols=64 Identities=25% Similarity=0.362 Sum_probs=57.5
Q ss_pred CCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeec-------CccccccccEEEee
Q psy800 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD-------SHLLSYFASDLINF 74 (204)
Q Consensus 11 ~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~-------~~~~~~lG~vlIn~ 74 (204)
-...|+++|+++++|+|+|+|+|||+|.|+|+|||+||||+|+||+|+.. +...+.+|.++|+.
T Consensus 7 ~~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG 77 (96)
T 3bw1_A 7 HMETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRG 77 (96)
T ss_dssp CCCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECG
T ss_pred hhhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECC
Confidence 35789999999999999999999999999999999999999999999974 24467799999955
No 41
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.64 E-value=2.3e-16 Score=121.36 Aligned_cols=77 Identities=21% Similarity=0.371 Sum_probs=50.9
Q ss_pred CCCCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecC-------ccccccccEEEeeecccce
Q psy800 8 TNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDS-------HLLSYFASDLINFIWGLPM 80 (204)
Q Consensus 8 ~~~~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~-------~~~~~lG~vlIn~~~g~~~ 80 (204)
+..+...|...|.++++++|+|+|+|||+|.|+|.|||+||||||+||+|+..+ ...+.+|.++|+.- .++.
T Consensus 17 ~~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~-nIv~ 95 (113)
T 4emk_C 17 TERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGT-TLVL 95 (113)
T ss_dssp ---------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTT-TEEE
T ss_pred ccCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCC-eEEE
Confidence 344556788889999999999999999999999999999999999999999853 35788999999552 3344
Q ss_pred eeccc
Q psy800 81 ITPIT 85 (204)
Q Consensus 81 ~~PI~ 85 (204)
+.|+.
T Consensus 96 I~~~d 100 (113)
T 4emk_C 96 IAPMD 100 (113)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 44443
No 42
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.61 E-value=2.5e-16 Score=116.00 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=52.2
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEee----------cCccccccccEEEee
Q psy800 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH----------DSHLLSYFASDLINF 74 (204)
Q Consensus 13 ~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~----------~~~~~~~lG~vlIn~ 74 (204)
..|..+|.++++++|+|+|+||++|.|+|.|||+||||+|+||+|+. ++...+.+|.++|+.
T Consensus 3 ~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG 74 (91)
T 1d3b_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRG 74 (91)
T ss_dssp ----CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECG
T ss_pred CChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECC
Confidence 46788999999999999999999999999999999999999999975 234577889999844
No 43
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.61 E-value=9.1e-16 Score=118.82 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=57.4
Q ss_pred CcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 14 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 14 ~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
.|+++|+++++++|+|+|+||++|.|+|.|||+|||++|+||+|+..++....+|.++|+.
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG 62 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRG 62 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECG
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcC
Confidence 6999999999999999999999999999999999999999999998777778999999943
No 44
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.61 E-value=6.1e-16 Score=117.55 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=46.7
Q ss_pred CCCCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEee-cCccccccccEEEee
Q psy800 10 PSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCH-DSHLLSYFASDLINF 74 (204)
Q Consensus 10 ~~~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~-~~~~~~~lG~vlIn~ 74 (204)
..+..|++||+++++++|.|+|+||++|.|+|.|||+||||+|+||+|.. +++....+|.++|+.
T Consensus 12 ~~~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG 77 (105)
T 4emh_A 12 QDPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRG 77 (105)
T ss_dssp --------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECG
T ss_pred CCCCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeC
Confidence 34568999999999999999999999999999999999999999999986 454677899999954
No 45
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.58 E-value=2.8e-15 Score=115.80 Aligned_cols=67 Identities=21% Similarity=0.393 Sum_probs=53.1
Q ss_pred CCCCCCCcHHHHHhhc--CCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCc--------------cccccccEE
Q psy800 8 TNPSTLLPLELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSH--------------LLSYFASDL 71 (204)
Q Consensus 8 ~~~~~~~P~~~L~~~~--~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~--------------~~~~lG~vl 71 (204)
.......|+++|.+++ +++|+|+|+||++|.|+|+|||+||||+|+||+|+.... ..+.+|.++
T Consensus 21 ~~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~ 100 (118)
T 1b34_B 21 EEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMF 100 (118)
T ss_dssp -----CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEE
T ss_pred hhhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEE
Confidence 4445779999999999 599999999999999999999999999999999987321 134689999
Q ss_pred Eee
Q psy800 72 INF 74 (204)
Q Consensus 72 In~ 74 (204)
|+.
T Consensus 101 IRG 103 (118)
T 1b34_B 101 LRG 103 (118)
T ss_dssp ECG
T ss_pred EcC
Confidence 955
No 46
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.57 E-value=3.7e-15 Score=116.61 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=56.9
Q ss_pred CCCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEe
Q psy800 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLIN 73 (204)
Q Consensus 12 ~~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn 73 (204)
...|++||+++++++|+|+|+||++|.|+|.+||.|||++|+||+|+..+.....+|+++|+
T Consensus 3 ~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IR 64 (126)
T 2y9a_D 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIR 64 (126)
T ss_dssp -CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEEC
T ss_pred cccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEe
Confidence 35799999999999999999999999999999999999999999999855557889999994
No 47
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.55 E-value=7.7e-15 Score=124.83 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=54.8
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeec----------CccccccccEEE
Q psy800 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD----------SHLLSYFASDLI 72 (204)
Q Consensus 13 ~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~----------~~~~~~lG~vlI 72 (204)
.++...|++++||+|+|+|+|||+|+|+|+|||+||||||+||+|+.. .+.++++|.+||
T Consensus 3 v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~I 72 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72 (231)
T ss_pred cCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEE
Confidence 567889999999999999999999999999999999999999999862 246788999999
No 48
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.37 E-value=4.7e-13 Score=105.18 Aligned_cols=55 Identities=16% Similarity=0.397 Sum_probs=49.8
Q ss_pred HHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeecCccccccccEEEee
Q psy800 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHDSHLLSYFASDLINF 74 (204)
Q Consensus 16 ~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~~~~~~~lG~vlIn~ 74 (204)
.++|+++++++|.|+|+||++|.|+|.|||+|||++|+||+|+. ...+|.++|+.
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~----~~~lg~v~IRG 56 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA----GEKFNRVFIMY 56 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT----CCEEEEEEECG
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc----CCEeceEEEeC
Confidence 46899999999999999999999999999999999999999983 25789998854
No 49
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.27 E-value=2.8e-06 Score=62.13 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred CcHHHHHhhcCCEEEEEEeCCeEEEEEEEEEc-CccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcc
Q psy800 117 LPLELVDKCIGSRIHIIMKNDKEIVGTLNGFD-DFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGL 188 (204)
Q Consensus 117 ~Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD-~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~ 188 (204)
.|+ .|..++||+|.|.|.||+.|+|+|.+|| ...|+||.||.| ++ ....++|.|..|.-|-.
T Consensus 8 ~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~-----~~----~~~~~iI~G~aI~eI~v 70 (86)
T 1y96_A 8 GPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE-----DG----SMSVTGIMGHAVQTVET 70 (86)
T ss_dssp CHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT-----TS----CEEEEEECGGGEEEEEE
T ss_pred CHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc-----CC----eEEEEEEecceEEEEEE
Confidence 455 5889999999999999999999999999 999999999921 22 34789999999988744
No 50
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=97.98 E-value=1.5e-05 Score=58.19 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=38.7
Q ss_pred CCcHHHHHhhcCCEEEEEEeCCeEEEEEEEeec-CeeeeEecce
Q psy800 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFD-DFVNMLLEDV 55 (204)
Q Consensus 13 ~~P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD-~~mNlvL~~~ 55 (204)
.+|.++ +.+++|+|.|.+.+|++|.|.|.+|| .-.|++|.|+
T Consensus 7 ~~p~el-~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 7 KGPLEW-QDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp SCHHHH-HHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred CCHHHH-HhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec
Confidence 567755 57999999999999999999999999 9999999999
No 51
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.58 E-value=0.0031 Score=45.52 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=28.0
Q ss_pred HHHhhc--CCEEEEEEeCCeEEEEEEEEEcCccceE
Q psy800 121 LVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNML 154 (204)
Q Consensus 121 ~L~~~i--~k~V~V~Lk~gr~i~G~L~gfD~~mNlV 154 (204)
+|+.+. ..+|+|.|.||-.+.|++.|||+|+=+.
T Consensus 11 fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL 46 (82)
T 1u1s_A 11 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILL 46 (82)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEE
Confidence 455544 5679999999999999999999999443
No 52
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.55 E-value=0.0033 Score=44.47 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=40.0
Q ss_pred HHHHhhc--CCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEccc
Q psy800 120 ELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 120 ~~L~~~i--~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
.+|+.+. ..+|+|.|.||..++|++.+||+|+ +.|++. ...+|-=..|..|.|.
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~~---------------~~~LIYKhAIsTI~p~ 67 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLKNT---------------VSQMVYKHAISTVVPS 67 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEESS---------------SEEEEEGGGEEEEEES
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEECC---------------ceEEEEeeeEEEEeEc
Confidence 3666666 5679999999999999999999999 444431 2445666667777654
No 53
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.29 E-value=0.0057 Score=43.79 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=38.9
Q ss_pred HHHhhc--CCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEccc
Q psy800 121 LVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 121 ~L~~~i--~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~~ 189 (204)
+|+.+. ..+|+|.|.||..+.|++.+||+|+ +.|++ | ...+|-=..|..|.|.
T Consensus 12 fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~-VlL~~---------g------~~qLIYKhAISTI~P~ 66 (79)
T 3sb2_A 12 FLNALRKEHVPVSIYLVNGIKLQGHVESFDQYV-VLLRN---------T------VTQMVYKHAISTVVPA 66 (79)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEES---------S------SEEEEEGGGEEEEEES
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEEC---------C------ceEEEEeeeEEEEeec
Confidence 555555 3569999999999999999999999 44431 2 1346666777887765
No 54
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.27 E-value=0.0041 Score=46.75 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=28.4
Q ss_pred HHHhhcC--CEEEEEEeCCeEEEEEEEEEcCccceE
Q psy800 121 LVDKCIG--SRIHIIMKNDKEIVGTLNGFDDFVNML 154 (204)
Q Consensus 121 ~L~~~i~--k~V~V~Lk~gr~i~G~L~gfD~~mNlV 154 (204)
+|+.+.. .+|+|.|.||-.++|++.+||+|+=++
T Consensus 13 fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL 48 (104)
T 2y90_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILL 48 (104)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 5666654 479999999999999999999999444
No 55
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.27 E-value=0.0071 Score=43.09 Aligned_cols=37 Identities=14% Similarity=0.375 Sum_probs=31.2
Q ss_pred HHHHHhhc--CCEEEEEEeCCeEEEEEEEeecCeeeeEec
Q psy800 16 LELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53 (204)
Q Consensus 16 ~~~L~~~~--~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~ 53 (204)
-.||+.+. +.+|.|.|.+|..++|.+.+||.|+ +.|+
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~-VlL~ 47 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYV-VSLN 47 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 45676666 6799999999999999999999999 4444
No 56
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.26 E-value=0.006 Score=43.99 Aligned_cols=37 Identities=24% Similarity=0.450 Sum_probs=30.7
Q ss_pred HHHHHhhc--CCEEEEEEeCCeEEEEEEEeecCeeeeEec
Q psy800 16 LELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53 (204)
Q Consensus 16 ~~~L~~~~--~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~ 53 (204)
-.||+.+- +.+|.|.|.+|..++|.+.|||.|+ +.|+
T Consensus 9 d~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ft-VlL~ 47 (82)
T 1u1s_A 9 DPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 47 (82)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceE-EEEe
Confidence 45666555 5689999999999999999999999 5554
No 57
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.23 E-value=0.0065 Score=42.94 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=33.2
Q ss_pred CCcHHHHHhhc--CCEEEEEEeCCeEEEEEEEeecCeeeeEec
Q psy800 13 LLPLELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53 (204)
Q Consensus 13 ~~P~~~L~~~~--~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~ 53 (204)
..--.||+.+. +.+|.|.|.+|..++|.+.+||.|+ +.|+
T Consensus 8 ~lQd~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~ 49 (74)
T 2ylb_A 8 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 49 (74)
T ss_dssp CCHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred ccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 34456777776 6799999999999999999999999 5555
No 58
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.06 E-value=0.0093 Score=42.58 Aligned_cols=34 Identities=21% Similarity=0.551 Sum_probs=28.6
Q ss_pred HHHhhc--CCEEEEEEeCCeEEEEEEEEEcCccceE
Q psy800 121 LVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNML 154 (204)
Q Consensus 121 ~L~~~i--~k~V~V~Lk~gr~i~G~L~gfD~~mNlV 154 (204)
+|+.+. ..+|+|.|.||..+.|++.|||+|+=+.
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL 50 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLL 50 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 555555 6789999999999999999999999444
No 59
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.05 E-value=0.0089 Score=42.79 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=30.6
Q ss_pred cHHHHHhhc--CCEEEEEEeCCeEEEEEEEeecCeeeeEe
Q psy800 15 PLELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLL 52 (204)
Q Consensus 15 P~~~L~~~~--~k~V~V~l~~g~~~~G~L~gfD~~mNlvL 52 (204)
--.||+.+. +.+|.|.|.+|..++|.+.+||.|+ +.|
T Consensus 9 Qd~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~-VlL 47 (79)
T 3sb2_A 9 QDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYV-VLL 47 (79)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEE
Confidence 356777666 4579999999999999999999999 445
No 60
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.04 E-value=0.0081 Score=42.17 Aligned_cols=29 Identities=14% Similarity=0.579 Sum_probs=25.7
Q ss_pred CCEEEEEEeCCeEEEEEEEeecCeeeeEec
Q psy800 24 GSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53 (204)
Q Consensus 24 ~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~ 53 (204)
+.+|.|.|.+|..++|.+.|||.|+ +.|+
T Consensus 25 ~~~Vtv~L~NG~~l~G~I~~fD~ft-Vll~ 53 (71)
T 2qtx_A 25 GKKVKIFLRNGEVLDAEVTGVSNYE-IMVK 53 (71)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceE-EEEE
Confidence 4689999999999999999999999 4444
No 61
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.96 E-value=0.011 Score=41.55 Aligned_cols=28 Identities=18% Similarity=0.540 Sum_probs=25.1
Q ss_pred CCEEEEEEeCCeEEEEEEEEEcCccceE
Q psy800 127 GSRIHIIMKNDKEIVGTLNGFDDFVNML 154 (204)
Q Consensus 127 ~k~V~V~Lk~gr~i~G~L~gfD~~mNlV 154 (204)
..+|+|.|.||..+.|.+.|||+|+=+.
T Consensus 25 ~~~Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 25 GKKVKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 5679999999999999999999999444
No 62
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=95.93 E-value=0.013 Score=41.63 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=28.8
Q ss_pred HHHhhc--CCEEEEEEeCCeEEEEEEEEEcCccceE
Q psy800 121 LVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNML 154 (204)
Q Consensus 121 ~L~~~i--~k~V~V~Lk~gr~i~G~L~gfD~~mNlV 154 (204)
+|+.+. ..+|+|.|.||-.+.|++.+||+|+=+.
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL 46 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSL 46 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 566665 6789999999999999999999999443
No 63
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.92 E-value=0.0075 Score=45.29 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=32.6
Q ss_pred CCcHHHHHhhcC--CEEEEEEeCCeEEEEEEEeecCeeeeEec
Q psy800 13 LLPLELVDKCIG--SRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53 (204)
Q Consensus 13 ~~P~~~L~~~~~--k~V~V~l~~g~~~~G~L~gfD~~mNlvL~ 53 (204)
..--.||+.+.. .+|.|.|.+|..++|.+.+||.|+ +.|+
T Consensus 8 nlQd~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~-VlL~ 49 (104)
T 2y90_A 8 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV-ILLK 49 (104)
T ss_dssp CCHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred ccHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 344567777764 489999999999999999999999 5554
No 64
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.91 E-value=0.0085 Score=42.80 Aligned_cols=37 Identities=24% Similarity=0.563 Sum_probs=30.4
Q ss_pred HHHHHhhc--CCEEEEEEeCCeEEEEEEEeecCeeeeEec
Q psy800 16 LELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLE 53 (204)
Q Consensus 16 ~~~L~~~~--~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~ 53 (204)
-.||+.+- +.+|.|.|.+|..++|.+.|||.|+ +.|+
T Consensus 13 d~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~-VlL~ 51 (78)
T 3ahu_A 13 DQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFT-VLLE 51 (78)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceE-EEEE
Confidence 45666555 6799999999999999999999999 4444
No 65
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=94.73 E-value=0.089 Score=36.73 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=34.4
Q ss_pred CCCc-HHHHHhhc--CCEEEEEEeCCeEEEEEEEEEcCccceEEcc
Q psy800 115 TLLP-LELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157 (204)
Q Consensus 115 ~~~P-l~~L~~~i--~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~d 157 (204)
+.+| ...|.+++ ..+|.|+|-+|..++|.+.-+|.|. +.|.+
T Consensus 6 t~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~c-l~L~~ 50 (70)
T 3hfo_A 6 SGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDG-LGLVD 50 (70)
T ss_dssp CSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEEC
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCE-EEEEc
Confidence 4566 77888888 4569999999999999999999998 44443
No 66
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=94.38 E-value=0.12 Score=36.28 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=42.8
Q ss_pred CCCc-HHHHHhhcC--CEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcc
Q psy800 115 TLLP-LELVDKCIG--SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGL 188 (204)
Q Consensus 115 ~~~P-l~~L~~~i~--k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~ 188 (204)
+.+| ...|.+++. .+|.|+|-+|..++|++.-+|.|. +.|.+..+ ..++|.-..|.+|.|
T Consensus 8 t~lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~~~~-------------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 8 TSLPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC-VCIADENS-------------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp -CHHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE-EEEEC----------------CEEEEEGGGEEEEEE
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE-EEEEcCCC-------------CeEEEEeeeeEEEEe
Confidence 4556 778999985 459999999999999999999998 55554332 135566666666654
No 67
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=94.10 E-value=0.34 Score=35.17 Aligned_cols=63 Identities=27% Similarity=0.410 Sum_probs=51.1
Q ss_pred hcCCEEEEEEeCCeEEEEEEEEEc-CccceEEcceEEEeecCCCe--------eeeeeCeEEEeCCcEEEEccc
Q psy800 125 CIGSRIHIIMKNDKEIVGTLNGFD-DFVNMLLEDVTEYESTPEGR--------RITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 125 ~i~k~V~V~Lk~gr~i~G~L~gfD-~~mNlVL~da~E~~~~~~~~--------~~~~lg~ilIRGdnI~~I~~~ 189 (204)
+++++|.+..+.+-+|+|+|...| +-.-+.|.|+.-+-++ |. ...-+..++.||+.|.-+...
T Consensus 11 yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTE--gR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~ 82 (88)
T 2vxe_A 11 ELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTE--DRDTQFQIAPQSQIYDYILFRGSDIKDIRVV 82 (88)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCT--TTCCSSCCCCCCSCEEEEEEETTTEEEEEEC
T ss_pred ccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCc--CCCCCcccCCCCceeeEEEEccCCccEEEEe
Confidence 799999999999999999999999 6678999998876432 21 234468999999999987654
No 68
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=92.06 E-value=0.77 Score=31.47 Aligned_cols=59 Identities=27% Similarity=0.529 Sum_probs=42.1
Q ss_pred HHHHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEE
Q psy800 120 ELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186 (204)
Q Consensus 120 ~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I 186 (204)
+.|+++.+++|-|-......+.|+|..||+-. +.|.|+..+. | .+-..++++=|.|--|
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~----G---Nk~k~liv~idDinWi 67 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI----G---NRGKQMLIGLEDINWI 67 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT----E---EEEEEEEEEGGGEEEE
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh----c---cccceeEEEeccceEE
Confidence 47899999999999999999999999999987 7889999864 2 1223556665555544
No 69
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=91.60 E-value=0.37 Score=35.43 Aligned_cols=65 Identities=28% Similarity=0.447 Sum_probs=51.1
Q ss_pred HhhcCCEEEEEEeCCeEEEEEEEEEc-CccceEEcceEEEeecCCCe--------eeeeeCeEEEeCCcEEEEccc
Q psy800 123 DKCIGSRIHIIMKNDKEIVGTLNGFD-DFVNMLLEDVTEYESTPEGR--------RITKLDQILLNGNNITMLGLH 189 (204)
Q Consensus 123 ~~~i~k~V~V~Lk~gr~i~G~L~gfD-~~mNlVL~da~E~~~~~~~~--------~~~~lg~ilIRGdnI~~I~~~ 189 (204)
..++|++|.+..+.+-+|+|+|...| +-.-+.|.|+.-+-+ +|. ...-+..++.||+-|.-+...
T Consensus 15 ~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGT--EgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~ 88 (95)
T 2fb7_A 15 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGT--EDRPTDRPIAPRDETFEYIIFRGSDIKDLTVC 88 (95)
T ss_dssp -CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSC--CSSSCSSCCCSCCCCSSCEEECSTTEEEEEES
T ss_pred CcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecc--cCCCCCCccCCCCcceeEEEEcCCCcceEEEe
Confidence 45899999999999999999999999 567799999775433 221 234568999999999987543
No 70
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=91.50 E-value=0.63 Score=33.55 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=49.3
Q ss_pred cHHHHHhhcCCEEEEEEeCCeEEEEEEEEEc-CccceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEEcc
Q psy800 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFD-DFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITMLGL 188 (204)
Q Consensus 118 Pl~~L~~~i~k~V~V~Lk~gr~i~G~L~gfD-~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I~~ 188 (204)
-|..|....+++|.+.+.++.++.|+..++| +..|+..++-.- +=| .++..+||+.-|+.++-
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~T----PiG----v~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQT----PIG----VQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECC----TTC----CEEEEEEEGGGEEEEEE
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCC----Ccc----cchhhhhhcCCEEEEEe
Confidence 3667777889999999999999999999999 557776655431 112 25688999999998864
No 71
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=90.55 E-value=0.45 Score=33.30 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=34.5
Q ss_pred CCCCCc-HHHHHhhcC--CEEEEEEeCCeEEEEEEEeecCeeeeEecce
Q psy800 10 PSTLLP-LELVDKCIG--SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 55 (204)
Q Consensus 10 ~~~~~P-~~~L~~~~~--k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~ 55 (204)
--+..| ...|..++. ++|.|+|.+|..+.|++.-+|.|. |-|.+.
T Consensus 6 fdt~lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~~ 53 (72)
T 3hfn_A 6 FDTSLPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTC-VCIADE 53 (72)
T ss_dssp ---CHHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSE-EEEEC-
T ss_pred cCCCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCE-EEEEcC
Confidence 334556 678888884 589999999999999999999998 555544
No 72
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=90.53 E-value=0.37 Score=37.04 Aligned_cols=37 Identities=27% Similarity=0.515 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEEeCCeEEEEEEEEEcCccceEE--cceE
Q psy800 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL--EDVT 159 (204)
Q Consensus 122 L~~~i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL--~da~ 159 (204)
..+|++..|.|+|+||..+.|++..+|.- +|+| .+|.
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a~ 45 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLAN 45 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEETT
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEeccccc
Confidence 56899999999999999999999999843 4666 8884
No 73
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=89.51 E-value=0.68 Score=32.20 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=34.3
Q ss_pred CCCc-HHHHHhhc--CCEEEEEEeCCeEEEEEEEeecCeeeeEecc
Q psy800 12 TLLP-LELVDKCI--GSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 54 (204)
Q Consensus 12 ~~~P-~~~L~~~~--~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~ 54 (204)
+..| ...|..++ ..+|.|+|.+|..+.|.+.-+|.|. +-|.+
T Consensus 6 t~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~c-l~L~~ 50 (70)
T 3hfo_A 6 SGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDG-LGLVD 50 (70)
T ss_dssp CSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEEC
T ss_pred CCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCE-EEEEc
Confidence 4456 67788888 4689999999999999999999998 54443
No 74
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=89.35 E-value=0.56 Score=32.18 Aligned_cols=44 Identities=30% Similarity=0.539 Sum_probs=35.3
Q ss_pred HHHHHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEecceEEeec
Q psy800 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD 60 (204)
Q Consensus 16 ~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~~~E~~~ 60 (204)
-+.|++.-+++|-|-..+...|.|+|.-||+-. +.|.|+..+..
T Consensus 8 dktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~G 51 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIG 51 (71)
T ss_dssp HHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTE
T ss_pred HHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhc
Confidence 357788889999999999999999999999998 88899998764
No 75
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=83.62 E-value=3.1 Score=29.83 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=45.7
Q ss_pred hhcCCEEEEEEeCCe-EEEEEEEEEcCc-cceEEcceEEEeecCCCeeeeeeCeEEEeCCcEEEE
Q psy800 124 KCIGSRIHIIMKNDK-EIVGTLNGFDDF-VNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186 (204)
Q Consensus 124 ~~i~k~V~V~Lk~gr-~i~G~L~gfD~~-mNlVL~da~E~~~~~~~~~~~~lg~ilIRGdnI~~I 186 (204)
+++++.|.|..++.- .|.|.|...|.. -||.|.+|.. +|- +.....+.+|+.-|.-+
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f~-----NG~-~~~s~eVtls~~DI~~L 64 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFH-----NGV-KCLVPEVTFRAGDITEL 64 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEEE-----TTE-ECSSSEEEEEGGGCSEE
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhhh-----CCC-CCCCcEEEEEecChhhe
Confidence 689999999999999 999999999966 6899999952 453 33445688888776554
No 76
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=78.96 E-value=2.4 Score=32.51 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=30.7
Q ss_pred HHhhcCCEEEEEEeCCeEEEEEEEeecCeeeeEe--cce
Q psy800 19 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLL--EDV 55 (204)
Q Consensus 19 L~~~~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL--~~~ 55 (204)
..+++|..|.|.|++|..+.|++..+|.- +|+| .+|
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a 44 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLA 44 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEET
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEecccc
Confidence 35788999999999999999999999853 4666 777
No 77
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=72.96 E-value=3.6 Score=34.88 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=29.6
Q ss_pred cCCEEEEEEeCCeEEEEEEEEEcCccceEEcce
Q psy800 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDV 158 (204)
Q Consensus 126 i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da 158 (204)
++++|.|.+.++..++|+..|.|+.-.|+|++.
T Consensus 223 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 223 IGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp TTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 589999998888999999999999999998753
No 78
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=71.30 E-value=2.9 Score=33.09 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=27.8
Q ss_pred CCCcHHH---HHhhcCCEEEEEEe----CCeEEEEEEEEEcCc
Q psy800 115 TLLPLEL---VDKCIGSRIHIIMK----NDKEIVGTLNGFDDF 150 (204)
Q Consensus 115 ~~~Pl~~---L~~~i~k~V~V~Lk----~gr~i~G~L~gfD~~ 150 (204)
...||.. +.+++|+.|.|+++ +.+.++|+|.++|+-
T Consensus 89 ldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 89 LERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp SSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred CCCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 3456553 55679999999994 558999999999864
No 79
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=68.67 E-value=3 Score=32.98 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=28.4
Q ss_pred CCCCCCcHHHH---HhhcCCEEEEEE----eCCeEEEEEEEeecCe
Q psy800 9 NPSTLLPLELV---DKCIGSRIHIIM----KNDKEIVGTLNGFDDF 47 (204)
Q Consensus 9 ~~~~~~P~~~L---~~~~~k~V~V~l----~~g~~~~G~L~gfD~~ 47 (204)
||-...|+.-. .++.|+.|.|++ .+.+.++|+|.++|.-
T Consensus 86 SPGldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 86 SPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp CCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred CCCCCCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 34444554333 367899999999 4558999999999864
No 80
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=68.42 E-value=4.2 Score=33.57 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=26.0
Q ss_pred cCCEEEEEEeCCeEEEEEEEEEcCccceEEcc
Q psy800 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157 (204)
Q Consensus 126 i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~d 157 (204)
++++|.|...++ ++|+..|.|+.-.|++++
T Consensus 187 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 187 LGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 589999976554 999999999999999965
No 81
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=67.76 E-value=6.5 Score=27.10 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=23.3
Q ss_pred HHhhcCCEEEEEEeCCeEEEEEEEeecCee
Q psy800 19 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFV 48 (204)
Q Consensus 19 L~~~~~k~V~V~l~~g~~~~G~L~gfD~~m 48 (204)
.+-..+.-|+++-+||+-|.|+++.....-
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~~~~ 43 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQTSDQ 43 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEECSSC
T ss_pred cccccCCeEEEEecCCCEEEEEEEecCCce
Confidence 333458899999999999999996655433
No 82
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=67.21 E-value=6.2 Score=27.23 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=29.8
Q ss_pred hcCCEEEEEEeCCeEEEEEEEEEcCccc-eEEcceEEEeec
Q psy800 125 CIGSRIHIIMKNDKEIVGTLNGFDDFVN-MLLEDVTEYEST 164 (204)
Q Consensus 125 ~i~k~V~V~Lk~gr~i~G~L~gfD~~mN-lVL~da~E~~~~ 164 (204)
.++..|.++-+||+.|-|+++...+.-= +..+|-.|.|..
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 4688999999999999999977764433 344777776643
No 83
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=66.21 E-value=7.3 Score=27.86 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=33.0
Q ss_pred HhhcCCEEEEEEeCCe-EEEEEEEeecCee-eeEecceE
Q psy800 20 DKCIGSRIHIIMKNDK-EIVGTLNGFDDFV-NMLLEDVT 56 (204)
Q Consensus 20 ~~~~~k~V~V~l~~g~-~~~G~L~gfD~~m-NlvL~~~~ 56 (204)
.+++++.|.+..+++- .|+|.|...|..= ||.|.+|.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 3689999999999998 9999999999874 79999884
No 84
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=65.54 E-value=11 Score=26.95 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=33.3
Q ss_pred HHHHHhhcCCEEEEEEeCCeEEEEEEEeecCee-eeEecce
Q psy800 16 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFV-NMLLEDV 55 (204)
Q Consensus 16 ~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~m-NlvL~~~ 55 (204)
+.+|..+.+++|.+.+..+.++.|+..++|... |+..++-
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L 61 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL 61 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEE
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhc
Confidence 556777789999999999999999999999765 6665543
No 85
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=64.28 E-value=13 Score=31.86 Aligned_cols=47 Identities=30% Similarity=0.324 Sum_probs=33.6
Q ss_pred cCCEEEEEEeCCeEEEEEEEEEcCccceEEcceEEEeecCCCeeeeeeCeEEEeC
Q psy800 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNG 180 (204)
Q Consensus 126 i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~da~E~~~~~~~~~~~~lg~ilIRG 180 (204)
++++|.|... +..++|+..|.|+.-.|++++. +|.....-|.+.+|+
T Consensus 272 ~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~-------~g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 272 INRPVKLIIG-DKEIFGISRGIDKQGALLLEQD-------GIIKPWMGGEISLRS 318 (321)
T ss_dssp TTSEEEEEET-TEEEEEEEEEECTTSCEEEEET-------TEEEEESSCEEEEC-
T ss_pred cCCEEEEEEC-CcEEEEEEEEECCCCeEEEEEC-------CCEEEEEeeeEEEec
Confidence 6899999874 5589999999999999998652 222233346666664
No 86
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=62.90 E-value=16 Score=30.00 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=27.3
Q ss_pred cCCEEEEEEeCCeEEEEEEEEEcCccceEEcc
Q psy800 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157 (204)
Q Consensus 126 i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~d 157 (204)
++++|.|...++..++|+..|.|+.-.|+ ++
T Consensus 191 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 191 IGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 68999999887766999999999999998 54
No 87
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=57.06 E-value=12 Score=26.93 Aligned_cols=59 Identities=24% Similarity=0.234 Sum_probs=43.4
Q ss_pred hhcCCEEEEEEeCCeEEEEEEEeecCee-eeEecceEEeecCccccccccEEEeeecccceeecccccccee
Q psy800 21 KCIGSRIHIIMKNDKEIVGTLNGFDDFV-NMLLEDVTDCHDSHLLSYFASDLINFIWGLPMITPITCAYSRS 91 (204)
Q Consensus 21 ~~~~k~V~V~l~~g~~~~G~L~gfD~~m-NlvL~~~~E~~~~~~~~~lG~vlIn~~~g~~~~~PI~~~f~~~ 91 (204)
.|++++|.+..+.+-.|+|+|...|.-= -+.|.++..+=.+... + . ...+|-+.+|.+.
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~---~--------~-~~ipp~~~vy~yI 69 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRD---T--------Q-FQIAPQSQIYDYI 69 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTC---C--------S-SCCCCCCSCEEEE
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCC---C--------C-cccCCCCceeeEE
Confidence 4789999999999999999999998653 5888888766332221 1 1 3456777777765
No 88
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=56.61 E-value=7.7 Score=32.08 Aligned_cols=30 Identities=23% Similarity=0.508 Sum_probs=23.8
Q ss_pred cCCEEEEEEeCCeEEEEEEEEEcCccceEEcc
Q psy800 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157 (204)
Q Consensus 126 i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~d 157 (204)
++++|.|...++ ++|+..|.|+.-.|++++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 689999988766 999999999999999965
No 89
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=54.65 E-value=11 Score=27.61 Aligned_cols=65 Identities=20% Similarity=0.140 Sum_probs=42.5
Q ss_pred cHHHHHhhcCCEEEEEEeCCeEEEEEEEeecCe-eeeEecceEEeecCccccccccEEEeeecccceeecccccccee
Q psy800 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDF-VNMLLEDVTDCHDSHLLSYFASDLINFIWGLPMITPITCAYSRS 91 (204)
Q Consensus 15 P~~~L~~~~~k~V~V~l~~g~~~~G~L~gfD~~-mNlvL~~~~E~~~~~~~~~lG~vlIn~~~g~~~~~PI~~~f~~~ 91 (204)
|..--..|+|++|.+..|.+-.|+|+|...|.- --+.|.++.-+=.+... + ++ ..+|-+.+|.+.
T Consensus 10 ~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~---~-------~~--~ipp~~~vyeyI 75 (95)
T 2fb7_A 10 DPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRP---T-------DR--PIAPRDETFEYI 75 (95)
T ss_dssp ------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSS---C-------SS--CCCSCCCCSSCE
T ss_pred CCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCC---C-------CC--ccCCCCcceeEE
Confidence 444456799999999999999999999999853 35778877654222211 1 11 266888888775
No 90
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=48.33 E-value=14 Score=31.07 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=28.0
Q ss_pred CCEEEEEEeCCeEEEEEEEeecCeeeeEecc
Q psy800 24 GSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 54 (204)
Q Consensus 24 ~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~ 54 (204)
+++|.|.+.+|..+.|+..|.|..=.|+|+.
T Consensus 224 g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 224 GSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp TSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 7899998888899999999999999998864
No 91
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=40.72 E-value=17 Score=26.41 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=20.0
Q ss_pred HHHHHhhcC--CEEEEEEeCCeEEEEEE
Q psy800 119 LELVDKCIG--SRIHIIMKNDKEIVGTL 144 (204)
Q Consensus 119 l~~L~~~i~--k~V~V~Lk~gr~i~G~L 144 (204)
|+-|...++ .+|.++|.||+.+.|++
T Consensus 18 Le~~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 18 LEHWVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHHHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHHHHhhCCeeEEEEEEcCCCeEeeee
Confidence 444444554 57999999999999986
No 92
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=35.69 E-value=32 Score=29.63 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=26.2
Q ss_pred cCCEEEEEEeCCeEEEEEEEEEcCccceEEcc
Q psy800 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157 (204)
Q Consensus 126 i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~d 157 (204)
++++|.|.. ++..++|+..|.|+.-.|++++
T Consensus 278 ~g~~V~v~~-~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 278 WNRTLLFTE-NDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SSSCEEEEC-C-CEEEEEEEEECTTSCEEEEE
T ss_pred cCCEEEEEE-CCeEEEEEEEEECCCCEEEEEE
Confidence 589999976 4568999999999999999864
No 93
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=34.99 E-value=40 Score=22.38 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.6
Q ss_pred cCCEEEEEEeCCeEEEEEEEEEcCc---cceEEcceEEEee
Q psy800 126 IGSRIHIIMKNDKEIVGTLNGFDDF---VNMLLEDVTEYES 163 (204)
Q Consensus 126 i~k~V~V~Lk~gr~i~G~L~gfD~~---mNlVL~da~E~~~ 163 (204)
.+..|.+.-.||+.|-|+++.+|.. .=+..+|-.+.|.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 3678999999999999999998754 3344466666553
No 94
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=33.21 E-value=47 Score=26.97 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=23.8
Q ss_pred cCCEEEEEEeCCeEEEEEEEEEcCccceEEcc
Q psy800 126 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 157 (204)
Q Consensus 126 i~k~V~V~Lk~gr~i~G~L~gfD~~mNlVL~d 157 (204)
++++|.| ++ ++|+..|.|+.-.|++++
T Consensus 193 ~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 193 MGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred cCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 5899999 45 999999999999999864
No 95
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=31.75 E-value=90 Score=22.83 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=44.0
Q ss_pred HhhcCCEEEEEEeCCe-EEEEEEEEEcCccceEEcceEEEeecCCCe-eeeeeCeEEEeCCcEEEE
Q psy800 123 DKCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTEYESTPEGR-RITKLDQILLNGNNITML 186 (204)
Q Consensus 123 ~~~i~k~V~V~Lk~gr-~i~G~L~gfD~~mNlVL~da~E~~~~~~~~-~~~~lg~ilIRGdnI~~I 186 (204)
.+++++-|.|...+.- .|.|.+...|. -+|+|.+|.. +|- -+.....+.+|-.-|.-+
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr-----NGiplk~~~~EVtLsa~DI~~L 67 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR-----NGVPLRKQNAEVVLKCTDIRSI 67 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE-----TTEECSCSSSCEEEETTTEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh-----cCcCcCCCCceEEEEecchhhe
Confidence 3789999999999887 99999999996 3499998885 442 133456677777766654
No 96
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=29.45 E-value=1e+02 Score=22.53 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=31.1
Q ss_pred hhcCCEEEEEEeCCe-EEEEEEEeecCeeeeEecceEE
Q psy800 21 KCIGSRIHIIMKNDK-EIVGTLNGFDDFVNMLLEDVTD 57 (204)
Q Consensus 21 ~~~~k~V~V~l~~g~-~~~G~L~gfD~~mNlvL~~~~E 57 (204)
+++++.|.|.+.+.- .|+|.+...|. -+|+|.+|..
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr 45 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR 45 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh
Confidence 689999999999996 99999999996 4488887753
No 97
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=27.70 E-value=58 Score=21.58 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCEEEEEEeCCeEEEEEEEeecCe
Q psy800 24 GSRIHIIMKNDKEIVGTLNGFDDF 47 (204)
Q Consensus 24 ~k~V~V~l~~g~~~~G~L~gfD~~ 47 (204)
+..|+++-.||+-|-|++..+|..
T Consensus 7 GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 7 GQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCEEEEEecCCCEEeEEEEEEecC
Confidence 678999999999999999998764
No 98
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=27.45 E-value=77 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHHhhcCCEEEEEEeCCe----EEEEEEEEE
Q psy800 121 LVDKCIGSRIHIIMKNDK----EIVGTLNGF 147 (204)
Q Consensus 121 ~L~~~i~k~V~V~Lk~gr----~i~G~L~gf 147 (204)
.|...+|++|.++...|| +-+|+|..-
T Consensus 19 ~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 19 EIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 577889999999999999 568998754
No 99
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=23.58 E-value=89 Score=25.42 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.8
Q ss_pred cCCEEEEEEeCCeEEEEEEEeecCeeeeEecc
Q psy800 23 IGSRIHIIMKNDKEIVGTLNGFDDFVNMLLED 54 (204)
Q Consensus 23 ~~k~V~V~l~~g~~~~G~L~gfD~~mNlvL~~ 54 (204)
++++|.+...++..+.|+..|.|..=.|+ +.
T Consensus 191 ~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 191 IGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred cCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 48999999877766999999999999988 53
No 100
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=23.30 E-value=86 Score=21.94 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=29.6
Q ss_pred hcCCEEEEEEeCCeEEEEEEEEEcCc---cceEEcceEEEee
Q psy800 125 CIGSRIHIIMKNDKEIVGTLNGFDDF---VNMLLEDVTEYES 163 (204)
Q Consensus 125 ~i~k~V~V~Lk~gr~i~G~L~gfD~~---mNlVL~da~E~~~ 163 (204)
..+.-|.++-+||+.|-|+++-.|.. .=+..+|-.+.|.
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 69 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEE
Confidence 46888999999999999999988853 3345566666553
No 101
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=20.61 E-value=59 Score=23.54 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred HHHHHhhcC--CEEEEEEeCCeEEEEEEE
Q psy800 16 LELVDKCIG--SRIHIIMKNDKEIVGTLN 42 (204)
Q Consensus 16 ~~~L~~~~~--k~V~V~l~~g~~~~G~L~ 42 (204)
++-+...++ .+|.+.|.||+.+.|++-
T Consensus 18 Le~~~~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 18 LEHWVKLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HHHHHHTSCTTCEEEEEETTSCEEEEEES
T ss_pred HHHHHHhhCCeeEEEEEEcCCCeEeeeec
Confidence 344444553 699999999999999974
Done!