Your job contains 1 sequence.
>psy800
MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTDCHD
SHLLSYFASDLINFIWGLPMITPITCAYSRSHQYRTLTHLLYTMTAPSVATNPSTLLPLE
LVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNG
NNITMLGLHTHCGMRPYIQHSMGE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy800
(204 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-070822-23 - symbol:zgc:171959 "zgc:171959" ... 365 1.5e-33 1
FB|FBgn0035675 - symbol:CG6610 species:7227 "Drosophila m... 360 5.2e-33 1
UNIPROTKB|Q2HJH0 - symbol:LSM5 "U6 snRNA-associated Sm-li... 359 6.7e-33 1
UNIPROTKB|Q9Y4Y9 - symbol:LSM5 "U6 snRNA-associated Sm-li... 359 6.7e-33 1
MGI|MGI:1913623 - symbol:Lsm5 "LSM5 homolog, U6 small nuc... 359 6.7e-33 1
WB|WBGene00003079 - symbol:lsm-5 species:6239 "Caenorhabd... 331 6.2e-30 1
UNIPROTKB|O18694 - symbol:lsm-5 "Protein LSM-5" species:6... 331 6.2e-30 1
TAIR|locus:2156589 - symbol:SAD1 "SUPERSENSITIVE TO ABA A... 300 1.2e-26 1
DICTYBASE|DDB_G0268716 - symbol:lsm5 "putative U6 small n... 263 1.0e-22 1
ASPGD|ASPL0000026389 - symbol:AN5679 species:162425 "Emer... 254 9.0e-22 1
UNIPROTKB|G4MRX5 - symbol:MGG_02462 "U6 snRNA-associated ... 231 2.5e-19 1
GENEDB_PFALCIPARUM|PF14_0411 - symbol:PF14_0411 "small nu... 225 1.1e-18 1
UNIPROTKB|Q8IL38 - symbol:PF14_0411 "Small nuclear ribonu... 225 1.1e-18 1
POMBASE|SPBC20F10.09 - symbol:lsm5 "U6 snRNP-associated p... 207 8.6e-17 1
SGD|S000000948 - symbol:LSM5 "Lsm (Like Sm) protein" spec... 163 3.9e-12 1
ASPGD|ASPL0000001547 - symbol:AN10781 species:162425 "Eme... 109 3.5e-06 1
UNIPROTKB|G4MSI0 - symbol:MGG_01450 "Sm snRNP core protei... 90 3.7e-06 2
UNIPROTKB|F1P280 - symbol:LSM3 "Uncharacterized protein" ... 105 1.0e-05 1
UNIPROTKB|Q32PE9 - symbol:LSM3 "U6 snRNA-associated Sm-li... 105 1.0e-05 1
UNIPROTKB|P62310 - symbol:LSM3 "U6 snRNA-associated Sm-li... 105 1.0e-05 1
UNIPROTKB|F2Z5S4 - symbol:LSM3 "Uncharacterized protein" ... 105 1.0e-05 1
MGI|MGI:1914928 - symbol:Lsm3 "LSM3 homolog, U6 small nuc... 105 1.0e-05 1
RGD|1305971 - symbol:Lsm3 "LSM3 homolog, U6 small nuclear... 105 1.0e-05 1
TAIR|locus:2014922 - symbol:LSM3A "AT1G21190" species:370... 102 2.2e-05 1
RGD|2318883 - symbol:LOC100362099 "small nuclear ribonucl... 102 2.2e-05 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 101 2.9e-05 1
WB|WBGene00003077 - symbol:lsm-3 species:6239 "Caenorhabd... 100 3.8e-05 1
DICTYBASE|DDB_G0277107 - symbol:lsm3 "putative U6 small n... 100 3.8e-05 1
UNIPROTKB|P62303 - symbol:SNRPE "Small nuclear ribonucleo... 100 3.8e-05 1
UNIPROTKB|A4FUI2 - symbol:SNRPE "Small nuclear ribonucleo... 100 3.8e-05 1
UNIPROTKB|F1ME11 - symbol:LOC100296197 "Uncharacterized p... 100 3.8e-05 1
UNIPROTKB|F1N150 - symbol:F1N150 "Uncharacterized protein... 100 3.8e-05 1
UNIPROTKB|P62304 - symbol:SNRPE "Small nuclear ribonucleo... 100 3.8e-05 1
UNIPROTKB|A1XQR9 - symbol:SNRPE "Small nuclear ribonucleo... 100 3.8e-05 1
UNIPROTKB|I3LDW9 - symbol:SNRPE "Small nuclear ribonucleo... 100 3.8e-05 1
MGI|MGI:98346 - symbol:Snrpe "small nuclear ribonucleopro... 100 3.8e-05 1
RGD|2321675 - symbol:Snrpe "small nuclear ribonucleoprote... 100 3.8e-05 1
SGD|S000005685 - symbol:SME1 "Core Sm protein Sm E" speci... 81 4.0e-05 2
TAIR|locus:2036257 - symbol:LSM3B "AT1G76860" species:370... 99 4.9e-05 1
ASPGD|ASPL0000049189 - symbol:AN1495 species:162425 "Emer... 98 6.5e-05 1
RGD|2319339 - symbol:LOC100361838 "small nuclear ribonucl... 98 6.5e-05 1
TAIR|locus:2118781 - symbol:AT4G30330 "AT4G30330" species... 97 8.4e-05 1
UNIPROTKB|A6NHK2 - symbol:SNRPE "Small nuclear ribonucleo... 96 0.00011 1
POMBASE|SPBC30D10.06 - symbol:lsm4 "U6 snRNP-associated p... 96 0.00011 1
TAIR|locus:2053989 - symbol:AT2G18740 "AT2G18740" species... 96 0.00011 1
FB|FBgn0051184 - symbol:LSm3 species:7227 "Drosophila mel... 95 0.00014 1
UNIPROTKB|J9P098 - symbol:LOC100855941 "Uncharacterized p... 95 0.00014 1
POMBASE|SPBC11G11.06c - symbol:sme1 "Sm snRNP core protei... 94 0.00018 1
SGD|S000005091 - symbol:LSM7 "Lsm (Like Sm) protein" spec... 94 0.00018 1
WB|WBGene00004919 - symbol:snr-6 species:6239 "Caenorhabd... 94 0.00018 1
ASPGD|ASPL0000007577 - symbol:AN6735 species:162425 "Emer... 92 0.00031 1
UNIPROTKB|E1BHK8 - symbol:SNRPE "Small nuclear ribonucleo... 92 0.00031 1
ZFIN|ZDB-GENE-040426-1112 - symbol:snrpe "small nuclear r... 92 0.00031 1
DICTYBASE|DDB_G0302414 - symbol:snrpE "small nuclear ribo... 91 0.00040 1
FB|FBgn0035271 - symbol:CG2021 species:7227 "Drosophila m... 91 0.00040 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 91 0.00040 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 91 0.00040 1
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec... 91 0.00040 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 91 0.00040 1
DICTYBASE|DDB_G0288479 - symbol:lsm8 "putative U6 small n... 90 0.00053 1
FB|FBgn0261790 - symbol:SmE "Small ribonucleoprotein part... 90 0.00053 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 90 0.00053 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 90 0.00053 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 90 0.00053 1
POMBASE|SPCC1840.10 - symbol:lsm8 "U6 snRNP-associated pr... 90 0.00053 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 88 0.00088 1
>ZFIN|ZDB-GENE-070822-23 [details] [associations]
symbol:zgc:171959 "zgc:171959" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-070822-23 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX HOGENOM:HOG000223547
EMBL:BX571950 EMBL:BC150414 IPI:IPI00609349 RefSeq:NP_001093908.1
UniGene:Dr.117231 STRING:A7E2L8 Ensembl:ENSDART00000105903
GeneID:563948 KEGG:dre:563948 NextBio:20885150 Uniprot:A7E2L8
Length = 91
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 72/81 (88%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A ATNPS LLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AAITATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 47/55 (85%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A ATNPS LLPLELVDKCIGSRIHI+MKNDKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AAITATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTE 56
>FB|FBgn0035675 [details] [associations]
symbol:CG6610 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=NAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0005681 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW EMBL:AY113521 RefSeq:NP_648022.1 UniGene:Dm.14483
SMR:Q9VRT7 IntAct:Q9VRT7 MINT:MINT-768745 STRING:Q9VRT7
EnsemblMetazoa:FBtr0077048 EnsemblMetazoa:FBtr0332059
EnsemblMetazoa:FBtr0332060 GeneID:38693 KEGG:dme:Dmel_CG6610
UCSC:CG6610-RA FlyBase:FBgn0035675 InParanoid:Q9VRT7
OrthoDB:EOG43TXC6 GenomeRNAi:38693 NextBio:809911 Uniprot:Q9VRT7
Length = 91
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 71/83 (85%), Positives = 77/83 (92%)
Query: 104 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYES 163
MTA +N STL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVTEYE+
Sbjct: 1 MTAVPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYEN 60
Query: 164 TPEGRRITKLDQILLNGNNITML 186
TP+GRRITKLDQILLNGNNITML
Sbjct: 61 TPDGRRITKLDQILLNGNNITML 83
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 46/57 (80%), Positives = 51/57 (89%)
Query: 1 MTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
MTA +N STL+PLELVDKCIGSRIHIIMKNDKE+VGTL GFDDFVNMLL+DVT+
Sbjct: 1 MTAVPPPSNISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTE 57
>UNIPROTKB|Q2HJH0 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:BC105404 IPI:IPI00700036 RefSeq:NP_001040018.1
UniGene:Bt.43458 ProteinModelPortal:Q2HJH0 SMR:Q2HJH0 STRING:Q2HJH0
Ensembl:ENSBTAT00000003010 GeneID:615136 KEGG:bta:615136 CTD:23658
GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310 InParanoid:Q2HJH0
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX NextBio:20899463
Uniprot:Q2HJH0
Length = 91
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>UNIPROTKB|Q9Y4Y9 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238097 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043928 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 CTD:23658
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX
EMBL:AF182291 EMBL:AC018641 EMBL:BC005938 EMBL:BF701546
IPI:IPI00220493 IPI:IPI00908769 RefSeq:NP_001124182.1
RefSeq:NP_001132971.1 RefSeq:NP_036454.1 UniGene:Hs.424908
ProteinModelPortal:Q9Y4Y9 SMR:Q9Y4Y9 DIP:DIP-31162N IntAct:Q9Y4Y9
STRING:Q9Y4Y9 PhosphoSite:Q9Y4Y9 DMDM:10720081 PaxDb:Q9Y4Y9
PRIDE:Q9Y4Y9 DNASU:23658 Ensembl:ENST00000409292
Ensembl:ENST00000409782 Ensembl:ENST00000409909
Ensembl:ENST00000409952 Ensembl:ENST00000410044
Ensembl:ENST00000450169 GeneID:23658 KEGG:hsa:23658 UCSC:uc003tct.2
GeneCards:GC07M032524 HGNC:HGNC:17162 HPA:HPA019054 MIM:607285
neXtProt:NX_Q9Y4Y9 PharmGKB:PA134881171 InParanoid:Q9Y4Y9
PhylomeDB:Q9Y4Y9 GenomeRNAi:23658 NextBio:46501 ArrayExpress:Q9Y4Y9
Bgee:Q9Y4Y9 CleanEx:HS_LSM5 Genevestigator:Q9Y4Y9
GermOnline:ENSG00000106355 Uniprot:Q9Y4Y9
Length = 91
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>MGI|MGI:1913623 [details] [associations]
symbol:Lsm5 "LSM5 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] MGI:MGI:1913623 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:23658 GeneTree:ENSGT00390000001455
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW EMBL:AK009617
EMBL:AK011218 EMBL:BC048459 EMBL:BC061085 EMBL:BC132626
EMBL:BC132628 IPI:IPI00119813 RefSeq:NP_079796.1
RefSeq:XP_003946397.1 UniGene:Mm.25642 ProteinModelPortal:P62322
SMR:P62322 IntAct:P62322 PhosphoSite:P62322 PRIDE:P62322
Ensembl:ENSMUST00000170382 GeneID:100044729 GeneID:66373
KEGG:mmu:100044729 KEGG:mmu:66373 UCSC:uc009cbj.2 NextBio:458218
Bgee:P62322 Genevestigator:P62322 GermOnline:ENSMUSG00000054264
Uniprot:P62322
Length = 91
Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 70/81 (86%), Positives = 75/81 (92%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVTE+E TP
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITP 61
Query: 166 EGRRITKLDQILLNGNNITML 186
EGRRITKLDQILLNGNNITML
Sbjct: 62 EGRRITKLDQILLNGNNITML 82
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A + TNPS LLPLELVDKCIGSRIHI+MK+DKEIVGTL GFDDFVNM+LEDVT+
Sbjct: 2 AANATTNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>WB|WBGene00003079 [details] [associations]
symbol:lsm-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] INTERPRO:IPR001163 GO:GO:0009792
GO:GO:0006915 GO:GO:0000003 GO:GO:0042127 GO:GO:0040020
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z81071 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 62/81 (76%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV EYE+T
Sbjct: 2 ATSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTA 61
Query: 166 EGRRITKLDQILLNGNNITML 186
+G+R+TKLD ILLNGN+ITML
Sbjct: 62 DGKRMTKLDTILLNGNHITML 82
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 42/55 (76%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV +
Sbjct: 2 ATSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE 56
>UNIPROTKB|O18694 [details] [associations]
symbol:lsm-5 "Protein LSM-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006915 GO:GO:0000003
GO:GO:0042127 GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z81071 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 62/81 (76%), Positives = 74/81 (91%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV EYE+T
Sbjct: 2 ATSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTA 61
Query: 166 EGRRITKLDQILLNGNNITML 186
+G+R+TKLD ILLNGN+ITML
Sbjct: 62 DGKRMTKLDTILLNGNHITML 82
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 42/55 (76%), Positives = 50/55 (90%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
A S +TNP+TLLPLEL+DKCIGS+I +IMKNDKEIVGTL GFDD+VNM+LEDV +
Sbjct: 2 ATSTSTNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVE 56
>TAIR|locus:2156589 [details] [associations]
symbol:SAD1 "SUPERSENSITIVE TO ABA AND DROUGHT 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009737 EMBL:CP002688 GO:GO:0009414
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AB012242
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
UniGene:At.49146 UniGene:At.6838 HSSP:O29885 EMBL:AY034896
EMBL:BT025700 IPI:IPI00538376 RefSeq:NP_199698.1
ProteinModelPortal:Q9FKB0 SMR:Q9FKB0 STRING:Q9FKB0 PRIDE:Q9FKB0
EnsemblPlants:AT5G48870.1 GeneID:834945 KEGG:ath:AT5G48870
TAIR:At5g48870 InParanoid:Q9FKB0 PhylomeDB:Q9FKB0
ProtClustDB:CLSN2686781 Genevestigator:Q9FKB0 Uniprot:Q9FKB0
Length = 88
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 57/78 (73%), Positives = 67/78 (85%)
Query: 109 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR 168
+A NPS LLP EL+D+CIGS+I +IMK DKE+VG L GFD +VNM+LEDVTEYE T EGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60
Query: 169 RITKLDQILLNGNNITML 186
R+TKLDQILLNGNNI +L
Sbjct: 61 RVTKLDQILLNGNNIAIL 78
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 35/52 (67%), Positives = 44/52 (84%)
Query: 6 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+A NPS LLP EL+D+CIGS+I +IMK DKE+VG L GFD +VNM+LEDVT+
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTE 52
>DICTYBASE|DDB_G0268716 [details] [associations]
symbol:lsm5 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0268716
INTERPRO:IPR001163 GenomeReviews:CM000150_GR GO:GO:0005730
EMBL:AAFI02000004 GO:GO:0003723 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:Q5CXX3 KO:K12624 OMA:CIGSRIW RefSeq:XP_646895.1
ProteinModelPortal:Q55EX5 SMR:Q55EX5 STRING:Q55EX5
EnsemblProtists:DDB0233383 GeneID:8616580 KEGG:ddi:DDB_G0268716
ProtClustDB:CLSZ2431478 Uniprot:Q55EX5
Length = 97
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 51/73 (69%), Positives = 60/73 (82%)
Query: 114 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S LLPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVTEYE TPEG + KL
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 174 DQILLNGNNITML 186
D ILLNGN++ +L
Sbjct: 74 DNILLNGNHVCLL 86
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 34/47 (72%), Positives = 40/47 (85%)
Query: 11 STLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
S LLPLEL++KCIGSRI I MKNDKE VGTL GFD +VN+ L+DVT+
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTE 60
>ASPGD|ASPL0000026389 [details] [associations]
symbol:AN5679 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] INTERPRO:IPR001163
GO:GO:0003676 EMBL:BN001305 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223547 EnsemblFungi:CADANIAT00003386 Uniprot:C8VFR4
Length = 129
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 53/86 (61%), Positives = 66/86 (76%)
Query: 101 LYTMTAPSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE 160
++ +P+ S LLPLEL+DKC+GSRI IIMKNDKE GTL GFDD+VNM+LEDVTE
Sbjct: 36 VFCWESPAYPKMASQLLPLELIDKCVGSRIWIIMKNDKEFSGTLLGFDDYVNMVLEDVTE 95
Query: 161 YESTPEGRRITKLDQILLNGNNITML 186
++ T G ++ KL +ILLNGNNI ML
Sbjct: 96 FDYT--GAQV-KLPKILLNGNNICML 118
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 3 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+P+ S LLPLEL+DKC+GSRI IIMKNDKE GTL GFDD+VNM+LEDVT+
Sbjct: 41 SPAYPKMASQLLPLELIDKCVGSRIWIIMKNDKEFSGTLLGFDDYVNMVLEDVTE 95
>UNIPROTKB|G4MRX5 [details] [associations]
symbol:MGG_02462 "U6 snRNA-associated Sm-like protein LSm5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001231
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12624 RefSeq:XP_003709256.1
ProteinModelPortal:G4MRX5 SMR:G4MRX5 EnsemblFungi:MGG_02462T0
GeneID:2681559 KEGG:mgr:MGG_02462 Uniprot:G4MRX5
Length = 82
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 47/71 (66%), Positives = 57/71 (80%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
LLPLEL+DKC+GSRI +IMK DKE G L GFDD+VNM+LEDVTE++ + G TK+ +
Sbjct: 5 LLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYS--GNH-TKMSK 61
Query: 176 ILLNGNNITML 186
ILLNGNNI ML
Sbjct: 62 ILLNGNNICML 72
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 33/45 (73%), Positives = 39/45 (86%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
LLPLEL+DKC+GSRI +IMK DKE G L GFDD+VNM+LEDVT+
Sbjct: 5 LLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTE 49
>GENEDB_PFALCIPARUM|PF14_0411 [details] [associations]
symbol:PF14_0411 "small nuclear ribonuclear
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0003676 EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12624 OMA:CIGSRIW ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547
HSSP:Q8ZYG5 RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38
SMR:Q8IL38 EnsemblProtists:PF14_0411:mRNA GeneID:811993
KEGG:pfa:PF14_0411 EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T LPL L+DKCIGS+I I+MK DKEIVG L GFD++VNM+LEDVTEY +++ K+
Sbjct: 9 TFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIK 68
Query: 175 QILLNGNNITML 186
++LLNG NIT++
Sbjct: 69 KLLLNGLNITIM 80
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 33/46 (71%), Positives = 40/46 (86%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T LPL L+DKCIGS+I I+MK DKEIVG L GFD++VNM+LEDVT+
Sbjct: 9 TFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>UNIPROTKB|Q8IL38 [details] [associations]
symbol:PF14_0411 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547 HSSP:Q8ZYG5
RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38 SMR:Q8IL38
EnsemblProtists:PF14_0411:mRNA GeneID:811993 KEGG:pfa:PF14_0411
EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLD 174
T LPL L+DKCIGS+I I+MK DKEIVG L GFD++VNM+LEDVTEY +++ K+
Sbjct: 9 TFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIK 68
Query: 175 QILLNGNNITML 186
++LLNG NIT++
Sbjct: 69 KLLLNGLNITIM 80
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 33/46 (71%), Positives = 40/46 (86%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T LPL L+DKCIGS+I I+MK DKEIVG L GFD++VNM+LEDVT+
Sbjct: 9 TFLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTE 54
>POMBASE|SPBC20F10.09 [details] [associations]
symbol:lsm5 "U6 snRNP-associated protein Lsm5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] PomBase:SPBC20F10.09 INTERPRO:IPR001163
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 GO:GO:0045292
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12624 OMA:CIGSRIW PIR:T39880
RefSeq:NP_596373.1 PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK
ProteinModelPortal:O42978 SMR:O42978 STRING:O42978
EnsemblFungi:SPBC20F10.09.1 GeneID:2540723 KEGG:spo:SPBC20F10.09
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EvolutionaryTrace:O42978
NextBio:20801845 Uniprot:O42978
Length = 80
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 42/73 (57%), Positives = 58/73 (79%)
Query: 115 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT-KL 173
T+LPLEL+DKCIGS + +IMK+++E GTL GFDD+VN++L+DVTEY+ T G +T K
Sbjct: 4 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG--VTEKH 60
Query: 174 DQILLNGNNITML 186
++LLNGN + ML
Sbjct: 61 SEMLLNGNGMCML 73
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 29/46 (63%), Positives = 41/46 (89%)
Query: 12 TLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
T+LPLEL+DKCIGS + +IMK+++E GTL GFDD+VN++L+DVT+
Sbjct: 4 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTE 49
>SGD|S000000948 [details] [associations]
symbol:LSM5 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
SGD:S000000948 INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003723
EMBL:BK006939 GO:GO:0008033 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18917 GO:GO:0006364
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EMBL:AY557783 PIR:S50649
RefSeq:NP_011073.1 ProteinModelPortal:P40089 SMR:P40089
DIP:DIP-1417N IntAct:P40089 MINT:MINT-383516 STRING:P40089
PaxDb:P40089 EnsemblFungi:YER146W GeneID:856889 KEGG:sce:YER146W
CYGD:YER146w NextBio:983290 Genevestigator:P40089
GermOnline:YER146W Uniprot:P40089
Length = 93
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGR-RITKLD 174
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED E+ PE R K+
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVM 65
Query: 175 Q----ILLNGNNITML 186
Q +LL+GNNI +L
Sbjct: 66 QHHGRMLLSGNNIAIL 81
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 22/45 (48%), Positives = 36/45 (80%)
Query: 13 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
+LPLE++DK I ++ I++++++E GTL GFDDFVN++LED +
Sbjct: 6 ILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVE 50
>ASPGD|ASPL0000001547 [details] [associations]
symbol:AN10781 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
INTERPRO:IPR001163 EMBL:BN001301 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000182713
OMA:GMQQQKQ InterPro:IPR027141 PANTHER:PTHR23338
EnsemblFungi:CADANIAT00006789 Uniprot:C8V1T8
Length = 119
Score = 109 (43.4 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L+ G + + +KN + + G L D+++N++L +V + ++PEG R KL +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVVQ--TSPEGDRFFKLPE 58
Query: 176 ILLNGNNITML 186
+ + GNNI L
Sbjct: 59 VYVRGNNIKYL 69
>UNIPROTKB|G4MSI0 [details] [associations]
symbol:MGG_01450 "Sm snRNP core protein Sme1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027078
INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 RefSeq:XP_003714403.1 ProteinModelPortal:G4MSI0
EnsemblFungi:MGG_01450T0 GeneID:2679702 KEGG:mgr:MGG_01450
Uniprot:G4MSI0
Length = 95
Score = 90 (36.7 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEY-----ESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+F+N++++D E ++T E RR L QILL G+N++++
Sbjct: 42 IEGKIRGFDEFMNLVIDDAIEVKQITKDNTEEKRR--PLGQILLKGDNVSLI 91
Score = 35 (17.4 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 80 MITPITCAYSRSHQYRTLTHLLY 102
++ PI C + + T++ LY
Sbjct: 13 LLPPINCIFKLLQSHATVSIWLY 35
>UNIPROTKB|F1P280 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:AADN02014130
IPI:IPI00596206 Ensembl:ENSGALT00000033548 Uniprot:F1P280
Length = 96
Score = 105 (42.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E T +
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 70
Query: 178 LNGNNITML 186
NI ML
Sbjct: 71 STKRNIPML 79
Score = 97 (39.2 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 53
>UNIPROTKB|Q32PE9 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 EMBL:BC108142 IPI:IPI00715218 RefSeq:NP_001032564.1
UniGene:Bt.53058 HSSP:Q5CXX3 ProteinModelPortal:Q32PE9 SMR:Q32PE9
STRING:Q32PE9 PRIDE:Q32PE9 Ensembl:ENSBTAT00000009684 GeneID:614759
KEGG:bta:614759 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 InParanoid:Q32PE9 OMA:MVFVRGD OrthoDB:EOG42NJ20
NextBio:20899271 Uniprot:Q32PE9
Length = 102
Score = 105 (42.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E T +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query: 178 LNGNNITML 186
NI ML
Sbjct: 77 STKRNIPML 85
Score = 97 (39.2 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>UNIPROTKB|P62310 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182289 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471055
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0043928 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 CTD:27258 eggNOG:NOG236203
HOGENOM:HOG000223550 HOVERGEN:HBG052368 OMA:MVFVRGD
OrthoDB:EOG42NJ20 EMBL:AJ238095 EMBL:AF182418 EMBL:CR457185
EMBL:BC007055 IPI:IPI00219229 RefSeq:NP_055278.1 UniGene:Hs.111632
ProteinModelPortal:P62310 SMR:P62310 DIP:DIP-31218N IntAct:P62310
MINT:MINT-1036960 STRING:P62310 PhosphoSite:P62310 DMDM:61227725
PaxDb:P62310 PeptideAtlas:P62310 PRIDE:P62310
Ensembl:ENST00000306024 GeneID:27258 KEGG:hsa:27258 UCSC:uc003byn.3
GeneCards:GC03P014219 HGNC:HGNC:17874 HPA:HPA044966 MIM:607283
neXtProt:NX_P62310 PharmGKB:PA134881991 InParanoid:P62310
PhylomeDB:P62310 ChiTaRS:LSM3 GenomeRNAi:27258 NextBio:50206
ArrayExpress:P62310 Bgee:P62310 CleanEx:HS_LSM3
Genevestigator:P62310 GermOnline:ENSG00000170860 Uniprot:P62310
Length = 102
Score = 105 (42.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E T +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query: 178 LNGNNITML 186
NI ML
Sbjct: 77 STKRNIPML 85
Score = 97 (39.2 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>UNIPROTKB|F2Z5S4 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27258
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:CU633560
RefSeq:NP_001231857.1 UniGene:Ssc.1234 ProteinModelPortal:F2Z5S4
SMR:F2Z5S4 PRIDE:F2Z5S4 Ensembl:ENSSSCT00000012698 GeneID:100514071
KEGG:ssc:100514071 Uniprot:F2Z5S4
Length = 102
Score = 105 (42.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E T +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query: 178 LNGNNITML 186
NI ML
Sbjct: 77 STKRNIPML 85
Score = 97 (39.2 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>MGI|MGI:1914928 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030629 "U6 snRNA
3'-end binding" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] MGI:MGI:1914928 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 OMA:MVFVRGD OrthoDB:EOG42NJ20 EMBL:AK003125
EMBL:AK007849 EMBL:AK021251 EMBL:BC054368 EMBL:BC062875
IPI:IPI00230388 RefSeq:NP_080585.1 UniGene:Mm.246693
UniGene:Mm.410956 ProteinModelPortal:P62311 SMR:P62311
STRING:P62311 PhosphoSite:P62311 REPRODUCTION-2DPAGE:IPI00230388
REPRODUCTION-2DPAGE:P62311 PaxDb:P62311 PRIDE:P62311
Ensembl:ENSMUST00000040607 GeneID:67678 KEGG:mmu:67678
UCSC:uc009cye.1 InParanoid:P62311 NextBio:325233 Bgee:P62311
Genevestigator:P62311 GermOnline:ENSMUSG00000034192 Uniprot:P62311
Length = 102
Score = 105 (42.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E T +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query: 178 LNGNNITML 186
NI ML
Sbjct: 77 STKRNIPML 85
Score = 97 (39.2 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>RGD|1305971 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] RGD:1305971
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:CH473957 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 GeneTree:ENSGT00390000013951 OMA:MVFVRGD
OrthoDB:EOG42NJ20 IPI:IPI00364533 RefSeq:NP_001100081.1
UniGene:Rn.203046 SMR:D4A7U6 Ensembl:ENSRNOT00000011557
GeneID:297455 KEGG:rno:297455 UCSC:RGD:1305971 NextBio:642291
Uniprot:D4A7U6
Length = 102
Score = 105 (42.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV E +T E T +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYK 76
Query: 178 LNGNNITML 186
NI ML
Sbjct: 77 STKRNIPML 85
Score = 97 (39.2 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ M+ND+E+ G L+ +D +NM+L DV +
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>TAIR|locus:2014922 [details] [associations]
symbol:LSM3A "AT1G21190" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 EMBL:AC036104
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223550
HSSP:Q8ZYG5 ProtClustDB:CLSN2679472 EMBL:AF334722 IPI:IPI00535788
PIR:B86345 RefSeq:NP_173542.1 UniGene:At.15544
ProteinModelPortal:Q9LMN4 SMR:Q9LMN4 STRING:Q9LMN4 PRIDE:Q9LMN4
EnsemblPlants:AT1G21190.1 GeneID:838714 KEGG:ath:AT1G21190
TAIR:At1g21190 InParanoid:Q9LMN4 OMA:IEERIYV PhylomeDB:Q9LMN4
ArrayExpress:Q9LMN4 Genevestigator:Q9LMN4 Uniprot:Q9LMN4
Length = 97
Score = 102 (41.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 108 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
SV + + PL+L+ I RI++ +++D+E+ G L+ FD +NM+L DV E +T E
Sbjct: 2 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 5 SVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
SV + + PL+L+ I RI++ +++D+E+ G L+ FD +NM+L DV +
Sbjct: 2 SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE 54
>RGD|2318883 [details] [associations]
symbol:LOC100362099 "small nuclear ribonucleoprotein polypeptide
E-like" species:10116 "Rattus norvegicus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR027078 RGD:2318883
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:PPINCIY
IPI:IPI00368169 RefSeq:XP_002728814.1 RefSeq:XP_003753347.1
Ensembl:ENSRNOT00000040164 GeneID:100362099 KEGG:rno:100362099
UCSC:RGD:2318883 Uniprot:D4A8M5
Length = 92
Score = 102 (41.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + +I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 101 (40.6 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 18/69 (26%), Positives = 41/69 (59%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P + K + ++ + + +++VG + G+D F+N++LED +E G ++ K+ ++
Sbjct: 4 PQPELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDA--FEEKDGGEKV-KIGTVV 60
Query: 178 LNGNNITML 186
+ GN++ ML
Sbjct: 61 IRGNSVVML 69
>WB|WBGene00003077 [details] [associations]
symbol:lsm-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550 OMA:MVFVRGD
EMBL:AL132865 HSSP:Q8ZYG5 RefSeq:NP_502579.1
ProteinModelPortal:Q9U1W8 SMR:Q9U1W8 DIP:DIP-26669N
MINT:MINT-1050579 STRING:Q9U1W8 PaxDb:Q9U1W8
EnsemblMetazoa:Y62E10A.12.1 EnsemblMetazoa:Y62E10A.12.2
GeneID:178303 KEGG:cel:CELE_Y62E10A.12 UCSC:Y62E10A.12.1 CTD:178303
WormBase:Y62E10A.12 InParanoid:Q9U1W8 NextBio:900574 Uniprot:Q9U1W8
Length = 102
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + R+++ M+ND+E+ G L FD +NM+L +V E +T E
Sbjct: 17 PLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65
Score = 93 (37.8 bits), Expect = 0.00024, P = 0.00024
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + R+++ M+ND+E+ G L FD +NM+L +V +
Sbjct: 17 PLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEE 59
>DICTYBASE|DDB_G0277107 [details] [associations]
symbol:lsm3 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0277107
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000151_GR
GO:GO:0003723 GO:GO:0006402 EMBL:AAFI02000019 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 KO:K12622
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236203 OMA:MVFVRGD RefSeq:XP_001134590.1
ProteinModelPortal:Q1ZXK3 STRING:Q1ZXK3 EnsemblProtists:DDB0233377
GeneID:8620835 KEGG:ddi:DDB_G0277107 ProtClustDB:CLSZ2445184
Uniprot:Q1ZXK3
Length = 97
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV E E T ++I+
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETD-EEII 70
Query: 178 LN-GNNITML 186
N NI ML
Sbjct: 71 RNIKRNIKML 80
Score = 90 (36.7 bits), Expect = 0.00053, P = 0.00053
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI + M+ D+E+ G L+ +D +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEE 54
>UNIPROTKB|P62303 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9031 "Gallus gallus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65702 EMBL:L19064 IPI:IPI00587414 RefSeq:NP_990581.1
UniGene:Gga.23395 ProteinModelPortal:P62303 SMR:P62303
MINT:MINT-124835 STRING:P62303 PRIDE:P62303
Ensembl:ENSGALT00000000190 GeneID:396180 KEGG:gga:396180
InParanoid:P62303 NextBio:20816234 Uniprot:P62303
Length = 92
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>UNIPROTKB|A4FUI2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 EMBL:BC114915
IPI:IPI00845188 RefSeq:NP_001076928.1 UniGene:Bt.36560
ProteinModelPortal:A4FUI2 SMR:A4FUI2 STRING:A4FUI2 PRIDE:A4FUI2
GeneID:531493 KEGG:bta:531493 CTD:6635 HOVERGEN:HBG003229
InParanoid:A4FUI2 OrthoDB:EOG4DBTGC NextBio:20875471
PANTHER:PTHR11193 Uniprot:A4FUI2
Length = 92
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>UNIPROTKB|F1ME11 [details] [associations]
symbol:LOC100296197 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:DAAA02072295
IPI:IPI00905250 Ensembl:ENSBTAT00000057036 Uniprot:F1ME11
Length = 91
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +R HI + + + I G + GFD++ N++L+D E S + R+ +L
Sbjct: 16 PINLIFRYLQNRSHIQVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKTKSRK--QL 73
Query: 174 DQILLNGNNITML 186
+I+L G+NIT++
Sbjct: 74 GRIMLKGDNITLI 86
>UNIPROTKB|F1N150 [details] [associations]
symbol:F1N150 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:DAAA02057271
IPI:IPI00826986 Ensembl:ENSBTAT00000011044 OMA:IFRCLQN
Uniprot:F1N150
Length = 92
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 118 PLELVDKCIG--SRIHIIMKNDKEI--VGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ +C+ SRI + + + G GFD+++N++L+D + S + R+ +L
Sbjct: 17 PINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>UNIPROTKB|P62304 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471067 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 OMA:VQIWLYE EMBL:M37716 EMBL:M15919 EMBL:X12466
EMBL:AK312130 EMBL:BC002639 EMBL:BC090951 EMBL:M21258 EMBL:M21253
IPI:IPI00029266 PIR:A32127 RefSeq:NP_003085.1 UniGene:Hs.334612
UniGene:Hs.654418 ProteinModelPortal:P62304 SMR:P62304
DIP:DIP-31220N IntAct:P62304 MINT:MINT-225773 STRING:P62304
PhosphoSite:P62304 DMDM:61237380 PaxDb:P62304 PRIDE:P62304
DNASU:6635 Ensembl:ENST00000414487 GeneID:6635 KEGG:hsa:6635
UCSC:uc001hai.3 GeneCards:GC01P203834 HGNC:HGNC:11161 MIM:128260
neXtProt:NX_P62304 PharmGKB:PA36002 InParanoid:P62304 ChiTaRS:SNRPE
EvolutionaryTrace:P62304 GenomeRNAi:6635 NextBio:25849
ArrayExpress:P62304 Bgee:P62304 CleanEx:HS_SNRPE
Genevestigator:P62304 GermOnline:ENSG00000182004 Uniprot:P62304
Length = 92
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>UNIPROTKB|A1XQR9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 HOVERGEN:HBG003229 PANTHER:PTHR11193
EMBL:DQ629140 EMBL:DQ629141 RefSeq:NP_001090934.1 UniGene:Ssc.1070
UniGene:Ssc.75275 ProteinModelPortal:A1XQR9 GeneID:100038330
KEGG:ssc:100038330 Uniprot:A1XQR9
Length = 92
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>UNIPROTKB|I3LDW9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:FP312914
EMBL:FP565233 ProteinModelPortal:I3LDW9 SMR:I3LDW9 PRIDE:I3LDW9
Ensembl:ENSSSCT00000023057 Uniprot:I3LDW9
Length = 92
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>MGI|MGI:98346 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein E" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027078
MGI:MGI:98346 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 CTD:6635 HOVERGEN:HBG003229
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65703 EMBL:X65704 EMBL:AK019462 EMBL:BC008262 EMBL:BC051207
EMBL:BC055765 IPI:IPI00133955 PIR:I48778 RefSeq:NP_033253.1
UniGene:Mm.249110 ProteinModelPortal:P62305 SMR:P62305
PhosphoSite:P62305 PRIDE:P62305 Ensembl:ENSMUST00000166915
GeneID:20643 KEGG:mmu:20643 UCSC:uc007cql.2 NextBio:299051
Bgee:P62305 CleanEx:MM_SNRPE Genevestigator:P62305 Uniprot:P62305
Length = 92
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>RGD|2321675 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein polypeptide E"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA;ISO]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
InterPro:IPR027078 RGD:2321675 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11097 OrthoDB:EOG4DBTGC PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE IPI:IPI00198418
RefSeq:XP_001064438.1 RefSeq:XP_002727191.1
Ensembl:ENSRNOT00000042614 GeneID:685587 KEGG:rno:685587 CTD:685587
NextBio:730016 Uniprot:D3ZSP1
Length = 92
Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>SGD|S000005685 [details] [associations]
symbol:SME1 "Core Sm protein Sm E" species:4932
"Saccharomyces cerevisiae" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;IPI] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR027078
SGD:S000005685 INTERPRO:IPR001163 GO:GO:0005737 EMBL:BK006948
GO:GO:0005682 GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0071004 EMBL:U55020
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0005685 RefSeq:NP_014804.3 GeneID:854332 KEGG:sce:YOR161C
RefSeq:NP_014802.3 GeneID:854330 KEGG:sce:YOR159C KO:K11097
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 HOGENOM:HOG000223543
OMA:VQIWLYE OrthoDB:EOG49GPSD EMBL:X92449 EMBL:Z75067 EMBL:AY558029
PIR:S67047 ProteinModelPortal:Q12330 SMR:Q12330 DIP:DIP-1633N
IntAct:Q12330 MINT:MINT-396862 STRING:Q12330 PaxDb:Q12330
EnsemblFungi:YOR159C CYGD:YOR159c NextBio:976384
Genevestigator:Q12330 GermOnline:YOR159C Uniprot:Q12330
Length = 94
Score = 81 (33.6 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYE-STPEGR----RITKLDQILLNGNNITML 186
I G + GFD+F+N+++++ E ++ +G+ + T L +ILL G+NIT++
Sbjct: 39 IKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLI 90
Score = 35 (17.4 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 80 MITPITCAYSRSHQYRTLTHLLY 102
M+ PI C ++ Q +T L+
Sbjct: 10 MVPPINCIFNFLQQQTPVTIWLF 32
>TAIR|locus:2036257 [details] [associations]
symbol:LSM3B "AT1G76860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
GenomeReviews:CT485782_GR InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AC079283 UniGene:At.26946 UniGene:At.64098
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HOGENOM:HOG000223550 OMA:MVFVRGD HSSP:Q8ZYG5 EMBL:AY086266
EMBL:BT025575 IPI:IPI00540699 PIR:D96797 RefSeq:NP_177812.1
ProteinModelPortal:Q9C6K5 SMR:Q9C6K5 STRING:Q9C6K5 PaxDb:Q9C6K5
PRIDE:Q9C6K5 EnsemblPlants:AT1G76860.1 GeneID:844021
KEGG:ath:AT1G76860 TAIR:At1g76860 InParanoid:Q9C6K5
PhylomeDB:Q9C6K5 ProtClustDB:CLSN2679472 Genevestigator:Q9C6K5
Uniprot:Q9C6K5
Length = 98
Score = 99 (39.9 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + RI++ +++D+E+ G L+ FD +NM+L DV E +T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Score = 92 (37.4 bits), Expect = 0.00031, P = 0.00031
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 15 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTD 57
PL+L+ + RI++ +++D+E+ G L+ FD +NM+L DV +
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE 54
>ASPGD|ASPL0000049189 [details] [associations]
symbol:AN1495 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
EMBL:AACD01000023 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223546 KO:K11099 OMA:VVIMEPK OrthoDB:EOG4XWK7N
RefSeq:XP_659099.1 ProteinModelPortal:Q5BD85 STRING:Q5BD85
EnsemblFungi:CADANIAT00008119 GeneID:2874980 KEGG:ani:AN1495.2
Uniprot:Q5BD85
Length = 78
Score = 98 (39.6 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 17/63 (26%), Positives = 39/63 (61%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + R+ + +++++G L G+D F+N++L++ +E P G ++ + I++ GN++
Sbjct: 10 KYMEKRVFCELNGNRKVIGVLRGYDVFMNIVLDEA--FEEKPGGEKVA-IGMIVIRGNSV 66
Query: 184 TML 186
ML
Sbjct: 67 VML 69
>RGD|2319339 [details] [associations]
symbol:LOC100361838 "small nuclear ribonucleoprotein E-like"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 RGD:2319339 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 OrthoDB:EOG4DBTGC PANTHER:PTHR11193 OMA:INIIFRY
IPI:IPI00363837 RefSeq:XP_001065908.1 Ensembl:ENSRNOT00000043934
GeneID:360844 KEGG:rno:360844 CTD:360844 NextBio:674328
Uniprot:D4AAS3
Length = 92
Score = 98 (39.6 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 118 PLELVDKCIG--SRIHIIMKNDKEI--VGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + I G + GFD+++N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>TAIR|locus:2118781 [details] [associations]
symbol:AT4G30330 "AT4G30330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] [GO:0016925 "protein sumoylation" evidence=RCA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O26745 eggNOG:COG1958 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:AY087756
EMBL:BT024534 EMBL:AK175112 EMBL:AK175313 EMBL:AK176788
IPI:IPI00542865 RefSeq:NP_567844.1 UniGene:At.31841
ProteinModelPortal:Q8LAK5 SMR:Q8LAK5 IntAct:Q8LAK5 STRING:Q8LAK5
PaxDb:Q8LAK5 PRIDE:Q8LAK5 EnsemblPlants:AT4G30330.1 GeneID:829156
KEGG:ath:AT4G30330 TAIR:At4g30330 InParanoid:Q8LAK5
PhylomeDB:Q8LAK5 ProtClustDB:CLSN2683057 Genevestigator:Q8LAK5
Uniprot:Q8LAK5
Length = 88
Score = 97 (39.2 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L++ E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>UNIPROTKB|A6NHK2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AC114402
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 HGNC:HGNC:11161 ChiTaRS:SNRPE
EMBL:AC118554 IPI:IPI00647942 ProteinModelPortal:A6NHK2 SMR:A6NHK2
STRING:A6NHK2 PRIDE:A6NHK2 Ensembl:ENST00000367208
HOGENOM:HOG000293268 ArrayExpress:A6NHK2 Bgee:A6NHK2 Uniprot:A6NHK2
Length = 52
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 140 IVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I G + GFD+++N++L+D E S + R+ +L +I+L G+NIT+L
Sbjct: 3 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 47
>POMBASE|SPBC30D10.06 [details] [associations]
symbol:lsm4 "U6 snRNP-associated protein Lsm4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] PomBase:SPBC30D10.06 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0046540 GO:GO:0045292 GO:GO:0005732
GO:GO:0005688 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 PIR:T40190 RefSeq:NP_596279.1
PDB:4EMH PDBsum:4EMH ProteinModelPortal:O14352 STRING:O14352
PRIDE:O14352 EnsemblFungi:SPBC30D10.06.1 GeneID:2540475
KEGG:spo:SPBC30D10.06 OrthoDB:EOG49S9H0 NextBio:20801602
Uniprot:O14352
Length = 121
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 22/71 (30%), Positives = 39/71 (54%)
Query: 116 LLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQ 175
+LPL L++ G I + +KN + G L D+++N+ L +V + P+G + +L +
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIR--TMPDGDKFFRLPE 58
Query: 176 ILLNGNNITML 186
+ GNNI L
Sbjct: 59 CYIRGNNIKYL 69
>TAIR|locus:2053989 [details] [associations]
symbol:AT2G18740 "AT2G18740" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0030529
EMBL:AC005724 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:PPINCIY
ProtClustDB:CLSN2683057 EMBL:AY086369 EMBL:BT005662 EMBL:AK118809
IPI:IPI00523358 PIR:A84568 RefSeq:NP_179464.1 UniGene:At.39949
ProteinModelPortal:Q9ZV45 SMR:Q9ZV45 IntAct:Q9ZV45 STRING:Q9ZV45
PRIDE:Q9ZV45 EnsemblPlants:AT2G18740.1 GeneID:816389
KEGG:ath:AT2G18740 TAIR:At2g18740 InParanoid:Q9ZV45
PhylomeDB:Q9ZV45 ArrayExpress:Q9ZV45 Genevestigator:Q9ZV45
Uniprot:Q9ZV45
Length = 88
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 118 PLELVDKCIGS--RIHIIM--KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + S RI I + + D I G + GFD+++N++L++ E R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 70
Query: 174 DQILLNGNNITML 186
+ILL G+NIT++
Sbjct: 71 GRILLKGDNITLM 83
>FB|FBgn0051184 [details] [associations]
symbol:LSm3 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HSSP:O29386 OrthoDB:EOG45X6CK EMBL:BT001552
ProteinModelPortal:Q8IGW7 SMR:Q8IGW7 STRING:Q8IGW7 PaxDb:Q8IGW7
PRIDE:Q8IGW7 FlyBase:FBgn0051184 InParanoid:Q8IGW7
ArrayExpress:Q8IGW7 Bgee:Q8IGW7 Uniprot:Q8IGW7
Length = 103
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPE 166
PL+L+ + ++++ M+N++E+ G L+ FD +NM+L D E +T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
>UNIPROTKB|J9P098 [details] [associations]
symbol:LOC100855941 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
OMA:VQIWLYE EMBL:AAEX03000616 Ensembl:ENSCAFT00000003298
Uniprot:J9P098
Length = 92
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 118 PLELVDKCIG--SRIHIIMKN--DKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + I G + GFD++++++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMSLVLDDAKEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>POMBASE|SPBC11G11.06c [details] [associations]
symbol:sme1 "Sm snRNP core protein Sme1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR027078 PomBase:SPBC11G11.06c
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 GO:GO:0000395 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE PIR:T39333
RefSeq:NP_595724.1 ProteinModelPortal:Q9USZ3 IntAct:Q9USZ3
STRING:Q9USZ3 EnsemblFungi:SPBC11G11.06c.1 GeneID:2539607
KEGG:spo:SPBC11G11.06c OrthoDB:EOG49GPSD NextBio:20800764
Uniprot:Q9USZ3
Length = 84
Score = 94 (38.1 bits), Expect = 0.00018, P = 0.00018
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 130 IHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNITML 186
I + + D + G + GFD+F+N++L+D + ++ R +L +ILL G+NIT++
Sbjct: 28 IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKR---ELGRILLKGDNITLI 81
>SGD|S000005091 [details] [associations]
symbol:LSM7 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=NAS;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005688 "U6 snRNP" evidence=IDA] SGD:S000005091
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730 EMBL:BK006947
GO:GO:0003723 GO:GO:0008033 EMBL:Z46843 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
EMBL:Z71423 PIR:S55137 RefSeq:NP_014252.2 ProteinModelPortal:P53905
SMR:P53905 DIP:DIP-1419N IntAct:P53905 MINT:MINT-398907
STRING:P53905 PaxDb:P53905 PeptideAtlas:P53905 EnsemblFungi:YNL147W
GeneID:855575 KEGG:sce:YNL147W CYGD:YNL147w
GeneTree:ENSGT00510000047872 OMA:ENNTELI NextBio:979694
Genevestigator:P53905 GermOnline:YNL147W Uniprot:P53905
Length = 115
Score = 94 (38.1 bits), Expect = 0.00018, P = 0.00018
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 128 SRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
S+I + + K ++G L G+D +N++L+D EY S P+ T+L
Sbjct: 36 SKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTEL 81
>WB|WBGene00004919 [details] [associations]
symbol:snr-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0032940
"secretion by cell" evidence=IMP] [GO:0018996 "molting cycle,
collagen and cuticulin-based cuticle" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006997 "nucleus organization" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0040011
GO:GO:0003723 GO:GO:0007281 EMBL:Z98866 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006997 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PANTHER:PTHR11193 PIR:T27041 RefSeq:NP_499620.1
UniGene:Cel.9740 ProteinModelPortal:Q9XTU6 SMR:Q9XTU6
DIP:DIP-24866N IntAct:Q9XTU6 MINT:MINT-1060547 STRING:Q9XTU6
PaxDb:Q9XTU6 EnsemblMetazoa:Y49E10.15 GeneID:176668
KEGG:cel:CELE_Y49E10.15 UCSC:Y49E10.15 CTD:176668
WormBase:Y49E10.15 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 InParanoid:Q9XTU6 OMA:VQIWLYE NextBio:893536
Uniprot:Q9XTU6
Length = 90
Score = 94 (38.1 bits), Expect = 0.00018, P = 0.00018
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 112 NPSTLLPLELVDKCIGSR--IHIIMKND--KEIVGTLNGFDDFVNMLLEDVTEYESTPEG 167
N + P+ L+ + + +R + I + D + G + GFD+F+N++ ++ E +G
Sbjct: 7 NKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKG 66
Query: 168 RRITKLDQILLNGNNITML 186
R K+ +ILL G+NIT++
Sbjct: 67 RN--KIGRILLKGDNITLI 83
>ASPGD|ASPL0000007577 [details] [associations]
symbol:AN6735 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE EnsemblFungi:CADANIAT00007528
Uniprot:C8V1X5
Length = 94
Score = 92 (37.4 bits), Expect = 0.00031, P = 0.00031
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 110 ATNPSTLLPLELVDKCIGSRIHI-IMKNDK---EIVGTLNGFDDFVNMLLEDVTEY---- 161
A + L P+ + K + R + I ++ I G + GFD+F+N++++D E
Sbjct: 8 AARKTLLAPIHFIFKLLQQRSTVSIWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLAT 67
Query: 162 ESTPEGRRITKLDQILLNGNNITML 186
+S E RR L QILL G+N++++
Sbjct: 68 KSEEEKRR--PLGQILLKGDNVSLI 90
>UNIPROTKB|E1BHK8 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 EMBL:DAAA02049203 IPI:IPI00690390
Ensembl:ENSBTAT00000022848 OMA:PPINCIY NextBio:20929647
Uniprot:E1BHK8
Length = 92
Score = 92 (37.4 bits), Expect = 0.00031, P = 0.00031
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 118 PLELVDKCIG--SRIHIIMKNDKEI--VGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + SRI + + + G++ GFD+ +N++L+D E S + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIRVWLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKTKSRK--QL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>ZFIN|ZDB-GENE-040426-1112 [details] [associations]
symbol:snrpe "small nuclear ribonucleoprotein
polypeptide E" species:7955 "Danio rerio" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040426-1112 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 CTD:6635 HOVERGEN:HBG003229
OrthoDB:EOG4DBTGC PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:BC049062 IPI:IPI00507764
RefSeq:NP_957298.1 UniGene:Dr.117027 ProteinModelPortal:Q7ZUG0
STRING:Q7ZUG0 PRIDE:Q7ZUG0 Ensembl:ENSDART00000050296 GeneID:393979
KEGG:dre:393979 InParanoid:Q7ZUG0 NextBio:20814949 Bgee:Q7ZUG0
Uniprot:Q7ZUG0
Length = 92
Score = 92 (37.4 bits), Expect = 0.00031, P = 0.00031
Identities = 22/73 (30%), Positives = 43/73 (58%)
Query: 118 PLELVDKCIGSRIHIIM----KNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKL 173
P+ L+ + + +R I + + + I G + GFD+++N++L+D E + R+ L
Sbjct: 17 PINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 174 DQILLNGNNITML 186
+I+L G+NIT+L
Sbjct: 75 GRIMLKGDNITLL 87
>DICTYBASE|DDB_G0302414 [details] [associations]
symbol:snrpE "small nuclear ribonucleoprotein E"
species:44689 "Dictyostelium discoideum" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR027078
dictyBase:DDB_G0302414 INTERPRO:IPR001163 GenomeReviews:CM000154_GR
GO:GO:0003676 EMBL:AAFI02000109 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GO:GO:0005685 KO:K11097 PANTHER:PTHR11193 OMA:VQIWLYE
RefSeq:XP_002649120.1 EnsemblProtists:DDB0302415 GeneID:8626537
KEGG:ddi:DDB_G0302414 Uniprot:C7G054
Length = 92
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 106 APSVATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTP 165
A SV P TL+ L K +I + D I G + G D+++N++L++ +E
Sbjct: 6 AKSVMIKPITLIFKFLTQKT-EVQIMLFENTDIRIQGVIIGLDEYMNLVLDNASELSIKK 64
Query: 166 EGRRITKLDQILLNGNNITML 186
+ ++ L QILL G+NI+++
Sbjct: 65 KTKK--PLGQILLKGDNISLV 83
>FB|FBgn0035271 [details] [associations]
symbol:CG2021 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0071011 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
HSSP:P14678 EMBL:BT023632 RefSeq:NP_647660.1 UniGene:Dm.31160
SMR:Q9W087 IntAct:Q9W087 MINT:MINT-302001 STRING:Q9W087
EnsemblMetazoa:FBtr0072791 GeneID:38229 KEGG:dme:Dmel_CG2021
UCSC:CG2021-RA FlyBase:FBgn0035271 InParanoid:Q9W087
OrthoDB:EOG4MCVH1 GenomeRNAi:38229 NextBio:807639 Uniprot:Q9W087
Length = 95
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ I + II + + +GTL GFD +N+++++ E ST G L ++ G
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRG 63
Query: 181 NNITMLGL 188
+NI ++GL
Sbjct: 64 DNIAVIGL 71
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 16/63 (25%), Positives = 37/63 (58%)
Query: 124 KCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILLNGNNI 183
K + ++ + + +++ G L G+D F+N++LED E +G ++ K+ + + GN++
Sbjct: 11 KYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLED--SIEEKVDGEKV-KIGSVAIRGNSV 67
Query: 184 TML 186
M+
Sbjct: 68 IMI 70
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRIT----KLDQILLNGNNIT 184
RI ++I G L GFD +N++L+DV E PE ++T KL +++ G +
Sbjct: 35 RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94
Query: 185 ML 186
++
Sbjct: 95 LI 96
>SGD|S000006434 [details] [associations]
symbol:LSM3 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
Length = 89
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE--YESTPE--GRRITKL 173
PL+L+ + R++I ++ + +VGTL FD N++L D E Y+ E +
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query: 174 DQILLNGNNITML 186
+ + + G+ +T++
Sbjct: 64 EMVFIRGDTVTLI 76
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P EL K + ++ + + + + G L GFD F+N++++D E P G+ T + ++
Sbjct: 6 PPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEM--APGGQMNT-IGMVV 61
Query: 178 LNGNNITML 186
+ GN+I ML
Sbjct: 62 IRGNSIIML 70
>DICTYBASE|DDB_G0288479 [details] [associations]
symbol:lsm8 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0288479
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000111 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII RefSeq:XP_001134524.1
ProteinModelPortal:Q1ZXD5 STRING:Q1ZXD5 EnsemblProtists:DDB0233384
GeneID:8626646 KEGG:ddi:DDB_G0288479 Uniprot:Q1ZXD5
Length = 94
Score = 90 (36.7 bits), Expect = 0.00053, P = 0.00053
Identities = 16/69 (23%), Positives = 39/69 (56%)
Query: 119 LELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQILL 178
+ +++ + ++ ++ + + I+GTL G D +N++LE E + EG + L L+
Sbjct: 1 MAMLESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLI 60
Query: 179 NGNNITMLG 187
G+++ ++G
Sbjct: 61 KGDDVAVIG 69
>FB|FBgn0261790 [details] [associations]
symbol:SmE "Small ribonucleoprotein particle protein SmE"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:BT003597
RefSeq:NP_609162.1 UniGene:Dm.33848 ProteinModelPortal:Q9VLV5
SMR:Q9VLV5 DIP:DIP-18284N IntAct:Q9VLV5 MINT:MINT-342402
STRING:Q9VLV5 PaxDb:Q9VLV5 PRIDE:Q9VLV5 EnsemblMetazoa:FBtr0079560
GeneID:34080 KEGG:dme:Dmel_CG18591 UCSC:CG18591-RA CTD:34080
FlyBase:FBgn0261790 InParanoid:Q9VLV5 OrthoDB:EOG4R7STC
PhylomeDB:Q9VLV5 GenomeRNAi:34080 NextBio:786757 Bgee:Q9VLV5
GermOnline:CG18591 Uniprot:Q9VLV5
Length = 94
Score = 90 (36.7 bits), Expect = 0.00053, P = 0.00053
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 118 PLELVDKCIG--SRIHI-IMKN-DKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITK 172
P+ L+ + + SR+ + + +N I G + GFD+++N++L+D E Y T + R
Sbjct: 16 PINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRRN--- 72
Query: 173 LDQILLNGNNITML 186
L +I+L G+NIT++
Sbjct: 73 LGRIMLKGDNITLI 86
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 90 (36.7 bits), Expect = 0.00053, P = 0.00053
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ I + +I + + IVGTL GFD +N++L++ E S+ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 181 NNITMLG 187
+N+ ++G
Sbjct: 65 DNVAVIG 71
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 90 (36.7 bits), Expect = 0.00053, P = 0.00053
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ I + +I + + IVGTL GFD +N++L++ E S+ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 181 NNITMLG 187
+N+ ++G
Sbjct: 65 DNVAVIG 71
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 90 (36.7 bits), Expect = 0.00053, P = 0.00053
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 122 VDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYE-STPEGRRITKLDQILLNG 180
++ I + +I + + IVGTL GFD +N++L++ E S+ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 181 NNITMLG 187
+N+ ++G
Sbjct: 65 DNVAVIG 71
>POMBASE|SPCC1840.10 [details] [associations]
symbol:lsm8 "U6 snRNP-associated protein Lsm8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] PomBase:SPCC1840.10
INTERPRO:IPR001163 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0030532 GO:GO:0045292 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PIR:T41178 RefSeq:NP_588509.1
ProteinModelPortal:O74483 IntAct:O74483 STRING:O74483
EnsemblFungi:SPCC1840.10.1 GeneID:2539322 KEGG:spo:SPCC1840.10
eggNOG:NOG235625 HOGENOM:HOG000223549 KO:K12627 OMA:NHTVSII
OrthoDB:EOG48H0D6 NextBio:20800487 Uniprot:O74483
Length = 94
Score = 90 (36.7 bits), Expect = 0.00053, P = 0.00053
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 129 RIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTE-YESTPEGRRITKLDQILLNGNNITMLG 187
R+ +I + + ++G+L GFD N++L D E S + L LL G N+ M+G
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVG 69
Query: 188 L 188
L
Sbjct: 70 L 70
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 88 (36.0 bits), Expect = 0.00088, P = 0.00088
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 118 PLELVDKCIGSRIHIIMKNDKEIVGTLNGFDDFVNMLLEDVTEYESTPEGRRITKLDQIL 177
P EL K + + + + ++ + G L GFD F+NM++++ EY+ +G + L +
Sbjct: 6 PPEL-KKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSVN-LGMTV 61
Query: 178 LNGNNITML 186
+ GN++ ++
Sbjct: 62 IRGNSVVIM 70
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 204 204 0.00094 111 3 11 22 0.46 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 66
No. of states in DFA: 594 (63 KB)
Total size of DFA: 164 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.03u 0.09s 20.12t Elapsed: 00:00:15
Total cpu time: 20.04u 0.09s 20.13t Elapsed: 00:00:15
Start: Thu Aug 15 14:52:43 2013 End: Thu Aug 15 14:52:58 2013