Query psy8000
Match_columns 328
No_of_seqs 282 out of 1591
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 00:16:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406|consensus 100.0 5.7E-35 1.2E-39 263.9 19.7 202 122-327 6-220 (231)
2 PRK09481 sspA stringent starva 100.0 6.4E-32 1.4E-36 243.4 20.5 194 124-328 9-211 (211)
3 COG0435 ECM4 Predicted glutath 100.0 7.1E-31 1.5E-35 239.0 7.3 219 92-317 18-285 (324)
4 KOG2903|consensus 100.0 4.9E-30 1.1E-34 231.5 9.4 219 91-317 7-287 (319)
5 PRK15113 glutathione S-transfe 100.0 5.7E-28 1.2E-32 218.1 19.3 185 124-320 4-210 (214)
6 PLN02473 glutathione S-transfe 100.0 1.7E-27 3.6E-32 214.2 17.4 188 125-318 2-211 (214)
7 TIGR01262 maiA maleylacetoacet 100.0 2.7E-27 5.9E-32 211.9 17.3 184 127-320 1-206 (210)
8 PRK13972 GSH-dependent disulfi 100.0 2.4E-27 5.1E-32 213.9 15.9 182 125-319 1-206 (215)
9 KOG0868|consensus 99.9 3.1E-27 6.8E-32 203.0 15.5 189 124-322 4-211 (217)
10 PRK10357 putative glutathione 99.9 5.4E-27 1.2E-31 209.1 17.6 186 126-318 1-200 (202)
11 PRK10542 glutathionine S-trans 99.9 4E-27 8.7E-32 209.4 16.7 182 126-318 1-197 (201)
12 TIGR00862 O-ClC intracellular 99.9 1.3E-26 2.7E-31 212.9 17.7 185 131-325 16-227 (236)
13 PLN02378 glutathione S-transfe 99.9 8.4E-27 1.8E-31 210.7 16.0 178 131-320 17-201 (213)
14 PRK11752 putative S-transferas 99.9 4E-26 8.6E-31 213.1 19.7 193 122-320 41-260 (264)
15 PLN02395 glutathione S-transfe 99.9 2.1E-26 4.6E-31 207.0 17.3 187 125-318 2-210 (215)
16 COG0625 Gst Glutathione S-tran 99.9 9.5E-26 2.1E-30 202.7 16.5 179 126-313 1-199 (211)
17 PLN02817 glutathione dehydroge 99.9 3.3E-25 7.2E-30 207.0 18.0 178 131-321 70-254 (265)
18 PTZ00057 glutathione s-transfe 99.9 9.3E-24 2E-28 189.5 17.3 181 125-319 4-200 (205)
19 PRK10387 glutaredoxin 2; Provi 99.9 5.1E-23 1.1E-27 184.2 14.4 173 126-313 1-208 (210)
20 KOG0867|consensus 99.9 1.2E-22 2.7E-27 185.6 15.1 187 125-317 2-208 (226)
21 TIGR02182 GRXB Glutaredoxin, G 99.9 5.8E-22 1.2E-26 178.7 13.8 170 127-312 1-206 (209)
22 KOG1422|consensus 99.8 7.4E-19 1.6E-23 155.2 16.4 179 132-321 19-208 (221)
23 KOG4420|consensus 99.8 6.2E-19 1.3E-23 159.8 13.3 200 117-319 18-288 (325)
24 cd03061 GST_N_CLIC GST_N famil 99.8 1.8E-18 3.9E-23 136.1 9.0 71 131-201 19-89 (91)
25 PF13417 GST_N_3: Glutathione 99.8 2E-18 4.4E-23 130.7 9.0 74 128-201 1-74 (75)
26 cd03055 GST_N_Omega GST_N fami 99.8 3.8E-18 8.2E-23 133.7 10.0 86 106-195 3-89 (89)
27 KOG1695|consensus 99.8 1.7E-17 3.7E-22 149.0 15.4 183 125-319 3-201 (206)
28 cd03059 GST_N_SspA GST_N famil 99.7 8.8E-18 1.9E-22 125.6 9.2 73 126-198 1-73 (73)
29 cd03052 GST_N_GDAP1 GST_N fami 99.7 1.6E-17 3.4E-22 125.6 8.5 70 126-195 1-73 (73)
30 cd03058 GST_N_Tau GST_N family 99.7 2.4E-17 5.2E-22 124.2 9.1 73 126-198 1-74 (74)
31 cd03041 GST_N_2GST_N GST_N fam 99.7 2.6E-17 5.6E-22 125.4 8.3 74 125-198 1-77 (77)
32 cd03060 GST_N_Omega_like GST_N 99.7 5.4E-17 1.2E-21 121.4 8.8 68 127-194 2-70 (71)
33 cd03053 GST_N_Phi GST_N family 99.7 1.2E-16 2.6E-21 120.6 9.3 72 126-197 2-76 (76)
34 cd03045 GST_N_Delta_Epsilon GS 99.7 9.9E-17 2.2E-21 120.3 8.7 71 126-196 1-74 (74)
35 PF13409 GST_N_2: Glutathione 99.7 7.5E-17 1.6E-21 120.8 7.4 65 133-197 1-70 (70)
36 cd03050 GST_N_Theta GST_N fami 99.7 2.9E-16 6.4E-21 118.8 9.2 73 126-198 1-76 (76)
37 cd03048 GST_N_Ure2p_like GST_N 99.7 3.1E-16 6.8E-21 120.1 9.4 74 125-199 1-80 (81)
38 cd03056 GST_N_4 GST_N family, 99.7 4.1E-16 8.8E-21 116.3 8.7 70 126-195 1-73 (73)
39 PLN02907 glutamate-tRNA ligase 99.7 1.2E-15 2.5E-20 159.6 14.5 149 126-311 3-159 (722)
40 cd03049 GST_N_3 GST_N family, 99.6 4.2E-16 9.1E-21 116.9 7.8 70 126-195 1-73 (73)
41 cd03076 GST_N_Pi GST_N family, 99.6 4.4E-16 9.5E-21 117.4 7.6 72 126-197 2-73 (73)
42 cd03051 GST_N_GTT2_like GST_N 99.6 5.7E-16 1.2E-20 115.5 8.0 70 126-195 1-74 (74)
43 cd03044 GST_N_EF1Bgamma GST_N 99.6 7.5E-16 1.6E-20 116.5 8.2 70 127-196 2-74 (75)
44 cd03037 GST_N_GRX2 GST_N famil 99.6 6.7E-16 1.5E-20 115.3 7.8 70 126-196 1-71 (71)
45 cd03047 GST_N_2 GST_N family, 99.6 1.1E-15 2.4E-20 114.8 8.6 70 126-195 1-73 (73)
46 cd03042 GST_N_Zeta GST_N famil 99.6 1.7E-15 3.8E-20 113.0 8.3 70 126-195 1-73 (73)
47 cd03039 GST_N_Sigma_like GST_N 99.6 1.2E-15 2.5E-20 114.3 7.2 71 126-196 1-72 (72)
48 cd03046 GST_N_GTT1_like GST_N 99.6 2.6E-15 5.6E-20 113.0 8.9 73 126-199 1-76 (76)
49 cd03057 GST_N_Beta GST_N famil 99.6 3.1E-15 6.8E-20 113.3 8.7 73 126-199 1-77 (77)
50 cd03040 GST_N_mPGES2 GST_N fam 99.6 2.2E-15 4.7E-20 114.2 7.9 72 125-198 1-76 (77)
51 cd03080 GST_N_Metaxin_like GST 99.6 5.6E-15 1.2E-19 111.8 8.8 68 125-199 1-75 (75)
52 cd03038 GST_N_etherase_LigE GS 99.5 1.6E-14 3.6E-19 111.4 7.7 68 131-199 13-84 (84)
53 cd03075 GST_N_Mu GST_N family, 99.5 3.2E-14 6.8E-19 109.9 8.5 72 127-198 2-82 (82)
54 cd03043 GST_N_1 GST_N family, 99.5 4.3E-14 9.3E-19 106.6 8.2 65 131-195 7-73 (73)
55 cd03077 GST_N_Alpha GST_N fami 99.5 7.4E-14 1.6E-18 106.9 8.9 71 126-199 2-77 (79)
56 PF02798 GST_N: Glutathione S- 99.5 1.1E-13 2.4E-18 105.2 9.6 70 127-196 2-76 (76)
57 cd00570 GST_N_family Glutathio 99.5 1.2E-13 2.5E-18 100.3 8.5 70 126-195 1-71 (71)
58 cd03054 GST_N_Metaxin GST_N fa 99.5 3.1E-13 6.7E-18 101.1 8.3 58 133-197 15-72 (72)
59 COG2999 GrxB Glutaredoxin 2 [P 99.4 1.6E-12 3.4E-17 112.4 11.5 171 126-312 1-207 (215)
60 cd03184 GST_C_Omega GST_C fami 99.3 6.3E-12 1.4E-16 103.8 9.4 114 212-327 2-122 (124)
61 KOG3029|consensus 99.3 9.5E-12 2.1E-16 114.5 11.1 174 125-308 90-354 (370)
62 KOG4244|consensus 99.2 4.2E-10 9.1E-15 103.2 14.2 175 120-309 40-273 (281)
63 cd03190 GST_C_ECM4_like GST_C 99.1 1.6E-10 3.5E-15 98.0 7.9 113 212-327 4-127 (142)
64 cd03185 GST_C_Tau GST_C family 99.1 3.6E-10 7.8E-15 92.7 8.7 113 212-327 3-124 (126)
65 TIGR02190 GlrX-dom Glutaredoxi 99.1 6.3E-10 1.4E-14 85.1 8.4 74 122-195 6-79 (79)
66 cd03079 GST_N_Metaxin2 GST_N f 99.1 5.4E-10 1.2E-14 84.7 7.1 66 124-197 9-74 (74)
67 cd03186 GST_C_SspA GST_N famil 98.9 5E-09 1.1E-13 83.8 9.1 95 212-315 3-106 (107)
68 cd03201 GST_C_DHAR GST_C famil 98.9 6E-09 1.3E-13 86.2 8.4 104 221-326 9-118 (121)
69 cd03203 GST_C_Lambda GST_C fam 98.9 8.9E-09 1.9E-13 84.8 9.2 111 208-326 1-119 (120)
70 PRK10638 glutaredoxin 3; Provi 98.9 8.6E-09 1.9E-13 79.4 8.2 71 125-195 3-74 (83)
71 cd03029 GRX_hybridPRX5 Glutare 98.9 1.2E-08 2.5E-13 76.3 8.6 71 125-195 2-72 (72)
72 cd03198 GST_C_CLIC GST_C famil 98.8 1.3E-08 2.8E-13 85.9 8.6 98 222-321 7-127 (134)
73 cd03196 GST_C_5 GST_C family, 98.8 1.7E-08 3.6E-13 82.6 8.4 104 207-316 2-115 (115)
74 cd03188 GST_C_Beta GST_C famil 98.8 1.7E-08 3.6E-13 81.0 8.0 97 212-316 2-114 (114)
75 cd03191 GST_C_Zeta GST_C famil 98.8 1.9E-08 4.2E-13 82.1 6.7 100 212-319 3-120 (121)
76 cd03210 GST_C_Pi GST_C family, 98.7 6.1E-08 1.3E-12 80.3 8.6 102 212-320 3-114 (126)
77 cd03209 GST_C_Mu GST_C family, 98.7 7E-08 1.5E-12 79.2 8.6 100 212-320 2-111 (121)
78 cd03208 GST_C_Alpha GST_C fami 98.7 1.1E-07 2.4E-12 80.3 9.3 102 212-320 3-117 (137)
79 cd03178 GST_C_Ure2p_like GST_C 98.7 9.9E-08 2.1E-12 76.7 8.6 98 212-316 1-112 (113)
80 PRK10329 glutaredoxin-like pro 98.6 2.2E-07 4.8E-12 71.6 8.6 71 125-195 2-74 (81)
81 cd03027 GRX_DEP Glutaredoxin ( 98.6 1.8E-07 3.8E-12 70.1 7.6 68 124-191 1-69 (73)
82 cd02066 GRX_family Glutaredoxi 98.6 2.2E-07 4.8E-12 67.7 7.9 69 125-193 1-70 (72)
83 cd03187 GST_C_Phi GST_C family 98.6 1.1E-07 2.5E-12 76.7 6.4 97 212-316 2-118 (118)
84 TIGR02196 GlrX_YruB Glutaredox 98.6 2.5E-07 5.4E-12 67.9 7.6 70 125-194 1-73 (74)
85 cd03177 GST_C_Delta_Epsilon GS 98.6 2.3E-07 5E-12 75.5 7.5 98 212-316 2-110 (118)
86 cd03182 GST_C_GTT2_like GST_C 98.5 3.2E-07 7E-12 74.1 8.1 97 208-312 1-117 (117)
87 cd03189 GST_C_GTT1_like GST_C 98.5 2.7E-07 5.7E-12 74.9 7.3 94 206-310 2-119 (119)
88 cd03078 GST_N_Metaxin1_like GS 98.5 6.1E-07 1.3E-11 67.8 8.4 58 133-197 15-72 (73)
89 cd02976 NrdH NrdH-redoxin (Nrd 98.5 4.5E-07 9.8E-12 66.5 7.4 60 126-185 2-62 (73)
90 cd03180 GST_C_2 GST_C family, 98.5 2.9E-07 6.2E-12 73.3 6.6 93 212-312 2-110 (110)
91 cd03181 GST_C_EFB1gamma GST_C 98.4 7.5E-07 1.6E-11 72.6 7.9 102 212-320 1-118 (123)
92 cd03418 GRX_GRXb_1_3_like Glut 98.4 1.2E-06 2.6E-11 65.4 7.8 70 126-195 2-73 (75)
93 TIGR02200 GlrX_actino Glutared 98.4 1.4E-06 3E-11 65.0 7.6 70 126-195 2-76 (77)
94 cd03195 GST_C_4 GST_C family, 98.3 2.1E-06 4.6E-11 69.9 7.9 95 212-317 3-112 (114)
95 COG0695 GrxC Glutaredoxin and 98.3 3.3E-06 7.2E-11 64.9 8.1 68 125-192 2-72 (80)
96 cd03183 GST_C_Theta GST_C fami 98.3 2.3E-06 5E-11 70.3 7.0 96 213-316 2-120 (126)
97 TIGR02181 GRX_bact Glutaredoxi 98.3 4E-06 8.7E-11 63.5 7.4 71 126-196 1-72 (79)
98 cd03200 GST_C_JTV1 GST_C famil 98.3 2.1E-06 4.6E-11 68.1 6.0 90 191-309 1-96 (96)
99 TIGR02194 GlrX_NrdH Glutaredox 98.2 2.4E-06 5.3E-11 63.8 5.7 57 126-182 1-57 (72)
100 cd03207 GST_C_8 GST_C family, 98.2 2E-06 4.4E-11 68.0 5.4 70 239-317 27-101 (103)
101 PRK11200 grxA glutaredoxin 1; 98.2 1E-05 2.2E-10 62.4 8.4 75 125-199 2-84 (85)
102 PF00462 Glutaredoxin: Glutare 98.2 3.8E-06 8.2E-11 60.4 5.2 59 126-184 1-60 (60)
103 TIGR02183 GRXA Glutaredoxin, G 98.2 1.1E-05 2.5E-10 62.5 8.2 74 126-199 2-83 (86)
104 PF00043 GST_C: Glutathione S- 98.1 4.1E-06 8.8E-11 65.0 5.5 63 239-310 25-95 (95)
105 TIGR02189 GlrX-like_plant Glut 98.1 1.8E-05 3.8E-10 63.3 9.3 73 122-194 6-82 (99)
106 cd03206 GST_C_7 GST_C family, 98.1 3.5E-06 7.5E-11 66.6 5.0 64 239-312 30-100 (100)
107 cd03419 GRX_GRXh_1_2_like Glut 98.1 2.3E-05 5E-10 59.3 9.1 71 126-196 2-76 (82)
108 PHA03050 glutaredoxin; Provisi 98.0 3E-05 6.5E-10 63.0 8.9 70 123-192 12-88 (108)
109 cd03192 GST_C_Sigma_like GST_C 98.0 1.5E-05 3.2E-10 63.1 6.3 88 212-306 2-104 (104)
110 PF14497 GST_C_3: Glutathione 97.9 1.1E-05 2.4E-10 63.6 3.9 87 208-308 2-99 (99)
111 cd03204 GST_C_GDAP1 GST_C fami 97.9 1.7E-05 3.7E-10 64.8 4.8 71 239-312 26-111 (111)
112 TIGR02180 GRX_euk Glutaredoxin 97.9 9.9E-05 2.1E-09 55.9 8.8 71 126-196 1-77 (84)
113 cd03194 GST_C_3 GST_C family, 97.9 7.1E-05 1.5E-09 61.0 8.3 68 240-317 39-113 (114)
114 PF13410 GST_C_2: Glutathione 97.8 1.8E-05 3.8E-10 58.1 3.8 62 239-305 3-69 (69)
115 TIGR00365 monothiol glutaredox 97.8 9.3E-05 2E-09 58.9 8.2 72 123-194 11-88 (97)
116 cd03179 GST_C_1 GST_C family, 97.8 1.6E-05 3.5E-10 62.6 3.8 88 212-307 2-105 (105)
117 cd03028 GRX_PICOT_like Glutare 97.7 0.00017 3.8E-09 56.3 8.2 72 123-194 7-84 (90)
118 KOG3027|consensus 97.7 0.00026 5.6E-09 63.3 9.5 162 136-309 36-248 (257)
119 cd00299 GST_C_family Glutathio 97.5 7.1E-05 1.5E-09 57.7 3.1 63 239-306 33-100 (100)
120 cd03205 GST_C_6 GST_C family, 97.5 0.00036 7.7E-09 54.9 6.4 62 240-306 35-98 (98)
121 cd03202 GST_C_etherase_LigE GS 97.3 0.0005 1.1E-08 56.8 5.4 61 240-308 56-123 (124)
122 PRK10824 glutaredoxin-4; Provi 97.2 0.0017 3.8E-08 53.3 8.0 72 123-194 14-91 (115)
123 cd03031 GRX_GRX_like Glutaredo 97.1 0.0022 4.9E-08 54.9 7.9 69 125-193 1-80 (147)
124 PF10568 Tom37: Outer mitochon 97.1 0.0029 6.3E-08 47.6 7.3 55 133-194 13-71 (72)
125 PRK12759 bifunctional gluaredo 97.0 0.002 4.3E-08 64.2 7.5 67 125-191 3-78 (410)
126 cd03193 GST_C_Metaxin GST_C fa 97.0 0.00032 7E-09 53.9 1.5 63 242-307 19-88 (88)
127 PF14834 GST_C_4: Glutathione 96.9 0.0049 1.1E-07 50.4 7.8 98 208-317 1-113 (117)
128 KOG1752|consensus 96.6 0.02 4.4E-07 46.2 9.2 73 122-194 12-88 (104)
129 cd02973 TRX_GRX_like Thioredox 96.5 0.01 2.2E-07 42.9 6.3 58 125-185 2-64 (67)
130 cd03197 GST_C_mPGES2 GST_C fam 96.4 0.0071 1.5E-07 51.9 5.9 60 241-308 78-145 (149)
131 PTZ00062 glutaredoxin; Provisi 96.3 0.017 3.7E-07 52.2 8.1 71 124-194 113-189 (204)
132 cd03036 ArsC_like Arsenate Red 95.9 0.0096 2.1E-07 48.4 4.0 33 126-158 1-33 (111)
133 KOG3028|consensus 95.9 0.33 7.1E-06 46.3 14.5 165 133-309 16-234 (313)
134 PRK01655 spxA transcriptional 95.8 0.015 3.2E-07 48.8 4.6 33 125-157 1-33 (131)
135 cd02977 ArsC_family Arsenate R 95.6 0.025 5.4E-07 45.2 5.3 32 126-157 1-32 (105)
136 cd03032 ArsC_Spx Arsenate Redu 95.4 0.032 7E-07 45.5 5.4 33 125-157 1-33 (115)
137 PRK12559 transcriptional regul 95.0 0.059 1.3E-06 45.2 5.8 34 125-158 1-34 (131)
138 PF05768 DUF836: Glutaredoxin- 94.8 0.24 5.3E-06 37.6 8.4 55 125-181 1-57 (81)
139 cd03212 GST_C_Metaxin1_3 GST_C 94.7 0.036 7.7E-07 46.8 3.8 67 239-308 61-134 (137)
140 TIGR01617 arsC_related transcr 94.7 0.043 9.3E-07 44.8 4.2 32 126-157 1-32 (117)
141 PRK13344 spxA transcriptional 94.6 0.078 1.7E-06 44.5 5.6 33 125-157 1-33 (132)
142 cd03211 GST_C_Metaxin2 GST_C f 94.2 0.023 5E-07 47.1 1.5 66 239-307 54-126 (126)
143 cd03035 ArsC_Yffb Arsenate Red 93.4 0.17 3.7E-06 40.7 5.2 32 126-157 1-32 (105)
144 cd03030 GRX_SH3BGR Glutaredoxi 93.2 0.57 1.2E-05 36.9 7.8 67 126-192 2-79 (92)
145 cd03033 ArsC_15kD Arsenate Red 93.2 0.14 3.1E-06 41.8 4.4 32 126-157 2-33 (113)
146 cd01659 TRX_superfamily Thiore 93.0 0.32 7E-06 32.4 5.5 52 127-178 2-58 (69)
147 COG4545 Glutaredoxin-related p 92.8 0.32 6.9E-06 36.9 5.4 61 125-185 3-77 (85)
148 TIGR00412 redox_disulf_2 small 92.0 0.93 2E-05 33.9 7.2 56 125-185 2-61 (76)
149 TIGR00411 redox_disulf_1 small 91.9 1.8 3.8E-05 32.0 8.7 57 125-182 2-62 (82)
150 PF13192 Thioredoxin_3: Thiore 90.9 1.4 3.1E-05 32.8 7.3 58 125-187 2-63 (76)
151 cd03026 AhpF_NTD_C TRX-GRX-lik 90.6 0.88 1.9E-05 35.3 6.1 58 125-185 15-77 (89)
152 COG1393 ArsC Arsenate reductas 89.6 0.63 1.4E-05 38.3 4.7 33 125-157 2-34 (117)
153 COG0278 Glutaredoxin-related p 89.4 1.9 4.1E-05 34.6 7.0 70 124-195 15-93 (105)
154 PF04399 Glutaredoxin2_C: Glut 89.3 0.57 1.2E-05 39.5 4.3 63 241-312 58-124 (132)
155 PRK10853 putative reductase; P 89.1 0.57 1.2E-05 38.5 4.1 33 125-157 1-33 (118)
156 TIGR01616 nitro_assoc nitrogen 88.9 0.72 1.6E-05 38.4 4.6 33 125-157 2-34 (126)
157 PRK10026 arsenate reductase; P 88.4 0.84 1.8E-05 38.9 4.7 33 125-157 3-35 (141)
158 cd03199 GST_C_GRX2 GST_C famil 88.1 0.75 1.6E-05 38.5 4.2 63 241-312 59-125 (128)
159 PHA02125 thioredoxin-like prot 87.1 2.5 5.4E-05 31.3 6.2 52 125-179 1-52 (75)
160 TIGR00014 arsC arsenate reduct 86.4 1.1 2.4E-05 36.5 4.2 32 126-157 1-32 (114)
161 cd03034 ArsC_ArsC Arsenate Red 86.0 1.2 2.5E-05 36.1 4.2 32 126-157 1-32 (112)
162 PF11287 DUF3088: Protein of u 84.7 2.7 5.8E-05 34.3 5.5 70 132-201 22-110 (112)
163 TIGR03143 AhpF_homolog putativ 69.3 12 0.00027 38.6 6.7 58 125-185 479-541 (555)
164 PF00085 Thioredoxin: Thioredo 67.7 49 0.0011 24.8 9.6 70 125-196 20-102 (103)
165 cd02947 TRX_family TRX family; 67.5 35 0.00076 24.5 7.3 55 125-182 13-74 (93)
166 PF04908 SH3BGR: SH3-binding, 67.5 26 0.00055 28.0 6.7 64 125-188 2-81 (99)
167 PF03960 ArsC: ArsC family; I 67.4 7.2 0.00016 31.2 3.6 29 129-157 1-29 (110)
168 TIGR01295 PedC_BrcD bacterioci 64.2 36 0.00077 27.8 7.2 60 125-184 26-103 (122)
169 cd02984 TRX_PICOT TRX domain, 62.4 46 0.001 25.0 7.3 59 125-184 17-81 (97)
170 TIGR03140 AhpF alkyl hydropero 60.9 13 0.00027 38.1 4.8 72 125-197 120-198 (515)
171 KOG1147|consensus 60.6 5.9 0.00013 40.8 2.2 116 179-313 43-159 (712)
172 cd02949 TRX_NTR TRX domain, no 60.1 49 0.0011 25.2 7.1 59 125-184 16-80 (97)
173 PRK15317 alkyl hydroperoxide r 58.8 15 0.00033 37.5 5.0 73 124-197 118-197 (517)
174 KOG3425|consensus 51.4 45 0.00099 27.7 5.6 65 132-196 43-121 (128)
175 cd02975 PfPDO_like_N Pyrococcu 50.2 48 0.001 26.5 5.7 53 125-178 24-80 (113)
176 PF09635 MetRS-N: MetRS-N bind 49.3 11 0.00024 31.2 1.7 32 170-201 32-65 (122)
177 TIGR02187 GlrX_arch Glutaredox 48.8 78 0.0017 28.2 7.4 54 124-178 135-191 (215)
178 cd02953 DsbDgamma DsbD gamma f 47.4 63 0.0014 24.8 5.8 53 125-178 14-77 (104)
179 PF01323 DSBA: DSBA-like thior 42.1 40 0.00087 28.8 4.3 35 125-159 1-40 (193)
180 KOG0911|consensus 41.1 60 0.0013 29.8 5.3 73 124-196 139-217 (227)
181 cd02989 Phd_like_TxnDC9 Phosdu 39.0 1.8E+02 0.004 23.0 7.5 60 125-185 25-89 (113)
182 cd02951 SoxW SoxW family; SoxW 38.7 1.3E+02 0.0028 24.0 6.6 18 125-142 17-34 (125)
183 cd03020 DsbA_DsbC_DsbG DsbA fa 38.2 59 0.0013 28.5 4.8 23 124-146 79-101 (197)
184 PRK11657 dsbG disulfide isomer 37.1 49 0.0011 30.7 4.2 22 124-145 119-140 (251)
185 cd02963 TRX_DnaJ TRX domain, D 36.9 2.1E+02 0.0045 22.5 8.0 59 125-184 27-92 (111)
186 PRK10996 thioredoxin 2; Provis 35.8 2.5E+02 0.0054 23.1 9.6 59 125-184 55-119 (139)
187 PF04134 DUF393: Protein of un 34.5 1.2E+02 0.0025 23.9 5.6 69 128-197 1-77 (114)
188 cd03021 DsbA_GSTK DsbA family, 33.8 67 0.0015 28.5 4.5 34 125-158 2-39 (209)
189 PHA03075 glutaredoxin-like pro 32.8 68 0.0015 26.5 3.9 68 123-198 2-70 (123)
190 PRK09381 trxA thioredoxin; Pro 32.8 2.3E+02 0.0049 21.7 9.0 59 125-184 24-88 (109)
191 PF06110 DUF953: Eukaryotic pr 31.8 35 0.00076 28.1 2.1 57 132-188 36-106 (119)
192 PRK10877 protein disulfide iso 31.3 66 0.0014 29.4 4.1 23 124-146 109-131 (232)
193 COG2761 FrnE Predicted dithiol 29.8 1.2E+02 0.0027 27.8 5.5 30 122-151 4-37 (225)
194 PTZ00051 thioredoxin; Provisio 29.0 2.4E+02 0.0053 20.9 6.8 59 125-184 21-84 (98)
195 cd02972 DsbA_family DsbA famil 28.7 59 0.0013 23.7 2.8 22 126-147 1-22 (98)
196 cd02956 ybbN ybbN protein fami 28.2 2.5E+02 0.0054 20.8 9.1 58 125-183 15-78 (96)
197 cd02959 ERp19 Endoplasmic reti 26.6 3.3E+02 0.0073 21.7 7.5 61 125-185 22-91 (117)
198 PRK12595 bifunctional 3-deoxy- 25.6 56 0.0012 32.1 2.7 41 29-69 256-298 (360)
199 PTZ00102 disulphide isomerase; 24.2 4.6E+02 0.0099 26.0 9.1 74 125-199 52-139 (477)
200 cd02962 TMX2 TMX2 family; comp 24.2 4E+02 0.0087 22.6 7.4 61 125-185 50-122 (152)
201 PF13098 Thioredoxin_2: Thiore 23.8 90 0.002 24.1 3.2 21 125-145 8-28 (112)
202 cd02954 DIM1 Dim1 family; Dim1 23.4 4.1E+02 0.0088 21.6 7.0 58 126-184 18-81 (114)
203 cd03022 DsbA_HCCA_Iso DsbA fam 23.0 1.1E+02 0.0025 26.0 3.9 32 126-157 1-36 (192)
204 cd07238 Glo_EDI_BRP_like_5 Thi 22.5 1.9E+02 0.0042 21.9 4.9 16 5-20 13-28 (112)
205 cd03024 DsbA_FrnE DsbA family, 22.0 1E+02 0.0023 26.5 3.5 33 126-158 1-41 (201)
206 cd02955 SSP411 TRX domain, SSP 20.9 3.8E+02 0.0081 21.9 6.4 62 126-187 19-97 (124)
No 1
>KOG0406|consensus
Probab=100.00 E-value=5.7e-35 Score=263.88 Aligned_cols=202 Identities=27% Similarity=0.420 Sum_probs=173.7
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhC-CCCCccEEEeCCEeeccHHHHHHHHhhhCCC
Q psy8000 122 SLDFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRF-FPPKVPLIQHMDIPITDSLLICDYLNTKHPG 200 (328)
Q Consensus 122 ~~~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~n-P~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~ 200 (328)
+.+.++||++++|||++|++|+|++|||+|+++++|+.+|++|+++.| +.++||||+++|..|.||..|++||++.+++
T Consensus 6 ~~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~ 85 (231)
T KOG0406|consen 6 EDGTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPS 85 (231)
T ss_pred CCCeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccC
Confidence 447899999999999999999999999999999999999999999999 5789999999999999999999999999994
Q ss_pred -CCCCCCCChhhhhHHHHHHHHHHHH-HHHHHHhhh--cCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------Eeee
Q psy8000 201 -PRPLCHQDAFYQNDDNVMLAEEFEH-VAWGLRDCL--MVDHITDELYTNLTTALKWFERELTKRQTIY-------WFDY 269 (328)
Q Consensus 201 -~~~L~P~dp~~erA~~~~~~~~~~~-i~~~~~~~~--~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi 269 (328)
+ +++|+||+ +||+++.|+++++. +........ ...++.+.+.+++.+.|+.||+.|.+. ++| +.|+
T Consensus 86 ~~-~iLP~DPy-~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~-k~~fgG~~~G~vDi 162 (231)
T KOG0406|consen 86 GP-PILPSDPY-ERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKG-KDFFGGETIGFVDI 162 (231)
T ss_pred CC-CCCCCCHH-HHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCcCHhhh
Confidence 6 89999999 99999999999997 433333332 233567888999999999999999842 333 9999
Q ss_pred ecHHHHHHHhhcccccc-CCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhhhhhhcc
Q psy8000 270 MMWPWFERMAAIPVHSR-YKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPESYVVSVG 327 (328)
Q Consensus 270 ~L~p~L~r~~~~~~~~~-~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~~~~~~g 327 (328)
+++|++.++..+....+ ..+ ++.+++|.|.+|.+||.++|++++++++.+..++|+.
T Consensus 163 ~~~p~~~~~~~~~~~~~~~~~-~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~ 220 (231)
T KOG0406|consen 163 AIGPSFERWLAVLEKFGGVKF-IIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMK 220 (231)
T ss_pred hHHhhHHHHHHHHHHhcCccc-CCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHH
Confidence 99999888766653222 122 3468899999999999999999999999999988864
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=6.4e-32 Score=243.36 Aligned_cols=194 Identities=15% Similarity=0.234 Sum_probs=162.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCC
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGPRP 203 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~~~ 203 (328)
++++||+.+.||+|+||+++|+++|++|+.+.+++.+++++|+++||.|+||+|+++|.+|+||.||++||+++|++. .
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~-~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP-P 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC-C
Confidence 579999999999999999999999999999999998888999999999999999999999999999999999999877 8
Q ss_pred CCCCChhhhhHHHHHHHHHHHH-HHHHHHhhhcC-cchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHH
Q psy8000 204 LCHQDAFYQNDDNVMLAEEFEH-VAWGLRDCLMV-DHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPW 274 (328)
Q Consensus 204 L~P~dp~~erA~~~~~~~~~~~-i~~~~~~~~~~-~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~ 274 (328)
|+|.++. +|++++.|..++.. +......+... ++..+...+.+.+.|+.+|+.|++ ++| +||++++++
T Consensus 88 l~p~~~~-~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G~~~t~AD~~l~~~ 164 (211)
T PRK09481 88 LMPVYPV-ARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGE--KPYFMSEEFSLVDCYLAPL 164 (211)
T ss_pred CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccCCCccHHHHHHHHH
Confidence 9999998 99999999887764 32222222222 234556677899999999999976 455 999999999
Q ss_pred HHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhhhhhhccC
Q psy8000 275 FERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPESYVVSVGK 328 (328)
Q Consensus 275 L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~~~~~~g~ 328 (328)
+.++..... .+..++||+|.+|+++|.+||++|+++.+.+.... +||
T Consensus 165 ~~~~~~~~~------~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~~~~-~~~ 211 (211)
T PRK09481 165 LWRLPVLGI------ELSGPGAKELKGYMTRVFERDSFLASLTEAEREMR-LGR 211 (211)
T ss_pred HHHHHhcCC------CCCCCCChhHHHHHHHHhccHHHHHHcCHHHHHHh-ccC
Confidence 987764431 12225799999999999999999999998877666 554
No 3
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.1e-31 Score=238.96 Aligned_cols=219 Identities=13% Similarity=0.142 Sum_probs=178.1
Q ss_pred CCCCCccchhhhhhhhhccCCCCC--CCCCCCCCCcEEEEEeCCChhHHHHHHHHHHCCCce--eEEEecC---------
Q psy8000 92 GPDNQYKPVARAHVKHLSANDSDQ--HEEPHWSLDFIRFYSQRFCAFSHRVHLILYANNITH--DTVYINT--------- 158 (328)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~l~LY~~~~cP~a~RVrl~L~ekGIpy--e~v~vd~--------- 158 (328)
+.+|.|+|..+.|+++++.+++.+ +.+| +++||+||.+..||||||+.|++++||++- .+..+++
T Consensus 18 ~~~G~F~R~~s~fR~~i~~d~~~g~~~f~~--e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F 95 (324)
T COG0435 18 STDGEFKRSSSQFRNWITADGPPGTGGFKA--EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTF 95 (324)
T ss_pred cCCCcEEeccchhhceeecCCCCCcCCcCC--CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceE
Confidence 568999999999999999765441 1245 899999999999999999999999999872 2222221
Q ss_pred --C-------------CCchhhhhhCCC--C--CccEEEeCC---EeeccHHHHHHHHhhhCCC----CCCCCCCChhhh
Q psy8000 159 --A-------------NKPKWFLDRFFP--P--KVPLIQHMD---IPITDSLLICDYLNTKHPG----PRPLCHQDAFYQ 212 (328)
Q Consensus 159 --~-------------~k~e~~l~~nP~--G--kVPvL~d~g---~vL~ES~aIl~YL~e~~~~----~~~L~P~dp~~e 212 (328)
. ...+.|....|. | +||||||.. .+.+||.+|++.++..|.+ ..+|+|.+ .
T Consensus 96 ~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~---L 172 (324)
T COG0435 96 DPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA---L 172 (324)
T ss_pred cCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH---H
Confidence 0 012345666774 3 799999643 3558999999999876642 11689987 7
Q ss_pred hHHHHHHHHHHHH-HHHHHHhh--hcCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhcc
Q psy8000 213 NDDNVMLAEEFEH-VAWGLRDC--LMVDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIP 282 (328)
Q Consensus 213 rA~~~~~~~~~~~-i~~~~~~~--~~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~ 282 (328)
|.+++.+++|+.+ +++++|+. +.+|+.++++.++++++|++||+.|++ +.| +||++||++|.||+.++
T Consensus 173 r~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE~~L~~--~ryl~Gd~lTEAD~RLftTlvRFD~VY 250 (324)
T COG0435 173 RTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVKKLFEALDKLEQILSE--RRYLTGDQLTEADIRLFTTLVRFDPVY 250 (324)
T ss_pred HHHHHHHHhhhcccccCceeeecccchHHHHHHHHHHHHHHHHHHHHHhhc--CeeeccccchHhhhhhhheeEeecceE
Confidence 9999999999986 99999986 456788999999999999999999998 566 99999999999999999
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcC
Q psy8000 283 VHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQ 317 (328)
Q Consensus 283 ~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~ 317 (328)
..|++|..-...+||+|..|++.+++.|+|..|+.
T Consensus 251 vgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~d 285 (324)
T COG0435 251 VGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVD 285 (324)
T ss_pred EeeeecccchhhcCchHHHHHHHHhcCcccccccc
Confidence 99999953334679999999999999999999884
No 4
>KOG2903|consensus
Probab=99.96 E-value=4.9e-30 Score=231.53 Aligned_cols=219 Identities=15% Similarity=0.145 Sum_probs=178.1
Q ss_pred cCCCCCccchhhhhhhhhccCCCCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHCCCc----eeEEEe-c-C------
Q psy8000 91 YGPDNQYKPVARAHVKHLSANDSDQHEEPHWSLDFIRFYSQRFCAFSHRVHLILYANNIT----HDTVYI-N-T------ 158 (328)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~LY~~~~cP~a~RVrl~L~ekGIp----ye~v~v-d-~------ 158 (328)
.+.++.|+++++++++.++++++.. .| +++||+||.+..||||+|+.+++++||++ +..+.. . .
T Consensus 7 ss~~~~f~r~~ssfr~~iSkd~~~~--~p--akgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~ 82 (319)
T KOG2903|consen 7 SSTNGEFKRQASSFRETISKDHPIF--KP--AKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFL 82 (319)
T ss_pred cCCCcceEEeecccccccCCCCCcc--CC--CCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCC
Confidence 4567899999999999999987765 23 66999999999999999999999999976 222211 0 0
Q ss_pred C----------------------CCchhhhhhCCC--C--CccEEEeC---CEeeccHHHHHHHHhhhC---------CC
Q psy8000 159 A----------------------NKPKWFLDRFFP--P--KVPLIQHM---DIPITDSLLICDYLNTKH---------PG 200 (328)
Q Consensus 159 ~----------------------~k~e~~l~~nP~--G--kVPvL~d~---g~vL~ES~aIl~YL~e~~---------~~ 200 (328)
. ..++.|...+|. | +||||||. ..+.+||.+|++.+.+.| +.
T Consensus 83 ~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~ 162 (319)
T KOG2903|consen 83 DEHIIINDSERLGVTPDPLNGAKRLRELYYIASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPV 162 (319)
T ss_pred CcccCCCchhcccCCCcccccchhHHHHHhhcCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCc
Confidence 0 012445556664 3 79999963 446689999999998333 22
Q ss_pred CCCCCCCChhhhhHHHHHHHHHHHH-HHHHHHhh--hcCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------Eeeee
Q psy8000 201 PRPLCHQDAFYQNDDNVMLAEEFEH-VAWGLRDC--LMVDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYM 270 (328)
Q Consensus 201 ~~~L~P~dp~~erA~~~~~~~~~~~-i~~~~~~~--~~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~ 270 (328)
- +|+|.+ .+++++.|++|+.+ ++.++|++ +..++.++...++++++|+++|+.|+++-+.| +|||+
T Consensus 163 l-DL~P~~---L~~~Ide~N~wvy~~INNGVYk~GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDir 238 (319)
T KOG2903|consen 163 L-DLYPSS---LRAQIDETNSWVYDKINNGVYKCGFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIR 238 (319)
T ss_pred c-ccCCHH---HHHHHhhhhceecccccCceeeeccccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhhee
Confidence 3 688887 79999999999986 99999996 45677899999999999999999999854446 99999
Q ss_pred cHHHHHHHhhccccccCC-CCCCCCCCHHHHHHHHHHhc-cHhhHhhcC
Q psy8000 271 MWPWFERMAAIPVHSRYK-YPNPLVEFPRLLRWEMKMLD-DTAVKYHYQ 317 (328)
Q Consensus 271 L~p~L~r~~~~~~~~~~~-~~~~~~~yP~L~aW~~rm~~-rPs~k~t~~ 317 (328)
||+++.||+.++..|++| .+..+++||+|..|++++++ .|+|+.|..
T Consensus 239 Ly~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 239 LYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWNIPGFSSTTD 287 (319)
T ss_pred eeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHhhccchhhccc
Confidence 999999999999999998 44557799999999999998 899999874
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=99.96 E-value=5.7e-28 Score=218.10 Aligned_cols=185 Identities=14% Similarity=0.159 Sum_probs=150.0
Q ss_pred CcEEEEEeC--CChhHHHHHHHHHHCCCceeEEEecCCC---CchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy8000 124 DFIRFYSQR--FCAFSHRVHLILYANNITHDTVYINTAN---KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKH 198 (328)
Q Consensus 124 ~~l~LY~~~--~cP~a~RVrl~L~ekGIpye~v~vd~~~---k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~ 198 (328)
.+++||+++ .||+|+||+++|+++||+|+.+.+++.. +.++|++.||.|+||+|+++|.+|+||.+|++||++.+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 478999975 7999999999999999999999999753 55889999999999999999999999999999999999
Q ss_pred CCCCC---CCCCChhhhhHHHHHHHHHHHH-HHHHHHh-----hhc---CcchhHHHHHHHHHHHHHHHHHHhhCC----
Q psy8000 199 PGPRP---LCHQDAFYQNDDNVMLAEEFEH-VAWGLRD-----CLM---VDHITDELYTNLTTALKWFERELTKRQ---- 262 (328)
Q Consensus 199 ~~~~~---L~P~dp~~erA~~~~~~~~~~~-i~~~~~~-----~~~---~~~~~e~~~~~l~~~L~~LE~~L~~~g---- 262 (328)
+++ . |+|.++. +|+++++|..|++. +.+.... .+. .+...+...+++.+.|+.+|++|++.+
T Consensus 84 ~~~-~~~~l~p~~~~-~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~ 161 (214)
T PRK15113 84 APP-AWERIYPADLQ-ARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLF 161 (214)
T ss_pred CCC-CccccCCCCHH-HHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCEee
Confidence 876 5 9999999 99999999998864 4432211 111 112245677788999999999997421
Q ss_pred CcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChh
Q psy8000 263 TIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPE 320 (328)
Q Consensus 263 ~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~ 320 (328)
|.| +|||++++++.++.... .+. .|+|.+|++||.+||+||+++.+.+
T Consensus 162 G~~TlADi~l~~~l~~~~~~~--------~~~--~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 162 GEWCIADTDLALMLNRLVLHG--------DEV--PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred CCccHHHHHHHHHHHHHHHcC--------CCC--CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 124 99999999988775432 112 2999999999999999999987654
No 6
>PLN02473 glutathione S-transferase
Probab=99.95 E-value=1.7e-27 Score=214.24 Aligned_cols=188 Identities=18% Similarity=0.158 Sum_probs=148.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGP 201 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~ 201 (328)
.++||+++.||+++||+++|+++||+|+.+.++.. +++++++++||.|+||+|+++|.+|+||.+|++||++.+++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 58999999999999999999999999999999875 467788899999999999999999999999999999999753
Q ss_pred C-CCCCCChhhhhHHHHHHHHHHHHHHHH-----HHh-hhc----Cc---chhHHHHHHHHHHHHHHHHHHhhC----CC
Q psy8000 202 R-PLCHQDAFYQNDDNVMLAEEFEHVAWG-----LRD-CLM----VD---HITDELYTNLTTALKWFERELTKR----QT 263 (328)
Q Consensus 202 ~-~L~P~dp~~erA~~~~~~~~~~~i~~~-----~~~-~~~----~~---~~~e~~~~~l~~~L~~LE~~L~~~----g~ 263 (328)
+ +|+|.++. +|+++++|..+..+.... +.. .+. .+ +..+....++.+.|+.+|+.|+++ |.
T Consensus 82 ~~~l~p~~~~-~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 160 (214)
T PLN02473 82 GTDLLGKTLE-HRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYLGGD 160 (214)
T ss_pred CCCCCCCCHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcccCC
Confidence 2 58999988 999999999887653211 111 111 11 123445678888999999999762 22
Q ss_pred cE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCC
Q psy8000 264 IY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQP 318 (328)
Q Consensus 264 ~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~ 318 (328)
.+ +||+++++.+.+...... ... ..++||+|.+|++||.+||++++++..
T Consensus 161 ~~t~ADi~~~~~~~~~~~~~~--~~~---~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 161 EFTLADLTHMPGMRYIMNETS--LSG---LVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CCCHHHHHHHHHHHHHHhccc--cHH---HHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 33 999999999877543211 001 146899999999999999999998753
No 7
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.95 E-value=2.7e-27 Score=211.90 Aligned_cols=184 Identities=20% Similarity=0.179 Sum_probs=149.0
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCceeEEEecCC----CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCC
Q psy8000 127 RFYSQRFCAFSHRVHLILYANNITHDTVYINTA----NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGPR 202 (328)
Q Consensus 127 ~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~----~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~~ 202 (328)
+||+...||+|+|+|++|+++||+|+.+.+++. .+++++.+.||.|+||+|+++|.+|+||.+|++||+++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~- 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDP- 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCC-
Confidence 489999999999999999999999999998862 346789999999999999999999999999999999999876
Q ss_pred CCCCCChhhhhHHHHHHHHHHHH-HHH----HHHhhhcC----cch--hHHHHHHHHHHHHHHHHHHhhCCCcE------
Q psy8000 203 PLCHQDAFYQNDDNVMLAEEFEH-VAW----GLRDCLMV----DHI--TDELYTNLTTALKWFERELTKRQTIY------ 265 (328)
Q Consensus 203 ~L~P~dp~~erA~~~~~~~~~~~-i~~----~~~~~~~~----~~~--~e~~~~~l~~~L~~LE~~L~~~g~~F------ 265 (328)
+|+|.++. +++++++|..++.. +.+ .+..++.. .+. .+...+.+.+.|+.+|++|.+++++|
T Consensus 80 ~l~p~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~ 158 (210)
T TIGR01262 80 PLLPADPI-KRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTP 158 (210)
T ss_pred CCCCCCHH-HHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCC
Confidence 79999988 99999999888763 321 12222211 111 22345568899999999998655566
Q ss_pred -EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChh
Q psy8000 266 -WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPE 320 (328)
Q Consensus 266 -lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~ 320 (328)
+|||++++++.+..... ++.++||+|.+|+++|.+||++|++..+.+
T Consensus 159 T~ADi~~~~~l~~~~~~~--------~~~~~~p~l~~~~~~~~~rp~~~~~~~~~~ 206 (210)
T TIGR01262 159 TLADLCLVPQVYNAERFG--------VDLTPYPTLRRIAAALAALPAFQRAHPENQ 206 (210)
T ss_pred CHHHHHHHHHHHHHHHcC--------CCcccchHHHHHHHHHhcCHHHHHhCcccC
Confidence 99999999988765322 234689999999999999999999997653
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.95 E-value=2.4e-27 Score=213.91 Aligned_cols=182 Identities=14% Similarity=0.169 Sum_probs=141.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC---CchhhhhhCCCCCccEEEe-----CC--EeeccHHHHHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN---KPKWFLDRFFPPKVPLIQH-----MD--IPITDSLLICDYL 194 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~---k~e~~l~~nP~GkVPvL~d-----~g--~vL~ES~aIl~YL 194 (328)
+++||+.+ +|+|+||+++|+++||+|+.+.+++.. ++++|+++||.|+||+|++ +| .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 47999887 799999999999999999999998743 4678999999999999996 45 4799999999999
Q ss_pred hhhCCCCCCCCCCChhhhhHHHHHHHHHHHH-HHHHHHhh--hc---C---cchhHHHHHHHHHHHHHHHHHHhhC----
Q psy8000 195 NTKHPGPRPLCHQDAFYQNDDNVMLAEEFEH-VAWGLRDC--LM---V---DHITDELYTNLTTALKWFERELTKR---- 261 (328)
Q Consensus 195 ~e~~~~~~~L~P~dp~~erA~~~~~~~~~~~-i~~~~~~~--~~---~---~~~~e~~~~~l~~~L~~LE~~L~~~---- 261 (328)
+++++ .+.|.++. +|++++.|..|... +.+.+... +. . +...+.....+.+.|+.+|++|.++
T Consensus 80 ~~~~~---~l~p~~~~-~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~ 155 (215)
T PRK13972 80 AEKTG---LFLSHETR-ERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLG 155 (215)
T ss_pred HHhcC---CCCCCCHH-HHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 99984 47788888 99999999988765 32222110 11 1 1124455667888999999999752
Q ss_pred CCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCCh
Q psy8000 262 QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPP 319 (328)
Q Consensus 262 g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~ 319 (328)
|+.| +|||++++++.+..... ++.++||+|.+|+++|.+||++|+++...
T Consensus 156 Gd~~t~ADi~l~~~~~~~~~~~--------~~~~~~P~l~~w~~r~~~rp~~~~~~~~~ 206 (215)
T PRK13972 156 GENYSIADIACWPWVNAWTRQR--------IDLAMYPAVKNWHERIRSRPATGQALLKA 206 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhhcC--------CcchhCHHHHHHHHHHHhCHHHHHHHHHh
Confidence 2233 99999988775443221 23578999999999999999999987543
No 9
>KOG0868|consensus
Probab=99.95 E-value=3.1e-27 Score=202.96 Aligned_cols=189 Identities=18% Similarity=0.167 Sum_probs=158.6
Q ss_pred CcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCC----chhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANK----PKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHP 199 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k----~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~ 199 (328)
++..||+.+.|..++|||++|.+|||+||+++|++-.. ..+|.+.||.++||+|++||.+|+||.||++||+|.+|
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 46799999999999999999999999999999997422 34789999999999999999999999999999999999
Q ss_pred CCCCCCCCChhhhhHHHHHHHHHHHH-HHH----HHHhhhcCcch---hHHHHHHHHHHHHHHHHHHhhCCCcE------
Q psy8000 200 GPRPLCHQDAFYQNDDNVMLAEEFEH-VAW----GLRDCLMVDHI---TDELYTNLTTALKWFERELTKRQTIY------ 265 (328)
Q Consensus 200 ~~~~L~P~dp~~erA~~~~~~~~~~~-i~~----~~~~~~~~~~~---~e~~~~~l~~~L~~LE~~L~~~g~~F------ 265 (328)
++ +|+|.|+. .||..|++...+-+ +.| .+.+++..++. ..=+...+.+.+..||+.|....|.|
T Consensus 84 ~p-pLLP~d~~-KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDev 161 (217)
T KOG0868|consen 84 DP-PLLPKDPH-KRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEV 161 (217)
T ss_pred CC-CCCCcCHH-HHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCcee
Confidence 99 99999999 99999998887664 333 34445444332 23345668899999999999887788
Q ss_pred -EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhhh
Q psy8000 266 -WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPESY 322 (328)
Q Consensus 266 -lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~~ 322 (328)
+||+++.|.+.....+ .++...||-+.+-.+.+.+.|+|+.+.++.+.-
T Consensus 162 tiADl~L~pqv~nA~rf--------~vdl~PYPti~ri~e~l~elpaFq~ahP~nQPD 211 (217)
T KOG0868|consen 162 TIADLCLPPQVYNANRF--------HVDLTPYPTITRINEELAELPAFQAAHPDNQPD 211 (217)
T ss_pred ehhhhccchhhhhhhhc--------cccCCcCchHHHHHHHHHhCHHHHhcCCCCCCC
Confidence 9999999987655322 356788999999999999999999999887654
No 10
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.95 E-value=5.4e-27 Score=209.12 Aligned_cols=186 Identities=13% Similarity=0.063 Sum_probs=148.3
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLNTKHPGPRPL 204 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~e~~~~~~~L 204 (328)
++||+.+.||+++|||++|+++|++|+.+.++...+++++.+.||.|+||+|+ ++|.+++||.+|++||++.+++. .|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~-~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP-AM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC-CC
Confidence 48999999999999999999999999999998876777888899999999998 78899999999999999999876 79
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHhh----hc-C--c--chhHHHHHHHHHHHHHHHHHHhhC---CCcE-Eeeeec
Q psy8000 205 CHQDAFYQNDDNVMLAEEFEHVAWGLRDC----LM-V--D--HITDELYTNLTTALKWFERELTKR---QTIY-WFDYMM 271 (328)
Q Consensus 205 ~P~dp~~erA~~~~~~~~~~~i~~~~~~~----~~-~--~--~~~e~~~~~l~~~L~~LE~~L~~~---g~~F-lADi~L 271 (328)
+|.++. +++++++|..+.+......... .. . + +..+...+++.+.|+.+|++|.++ |+.+ +||+++
T Consensus 80 ~p~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~l~Gd~~t~ADi~l 158 (202)
T PRK10357 80 LPRDPL-AALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGTLKTDTVNLATIAI 158 (202)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCcccCCCcCHHHHHH
Confidence 999998 9999999987766533322211 11 1 1 113456678999999999999753 3344 999999
Q ss_pred HHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCC
Q psy8000 272 WPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQP 318 (328)
Q Consensus 272 ~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~ 318 (328)
++++.+...... ... ...+||+|.+|++||.+||+|+++.++
T Consensus 159 ~~~l~~~~~~~~--~~~---~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 159 ACAVGYLNFRRV--APG---WCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHhccc--Ccc---hhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 999887654221 111 135799999999999999999998875
No 11
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.95 E-value=4e-27 Score=209.42 Aligned_cols=182 Identities=13% Similarity=0.180 Sum_probs=145.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC----CchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN----KPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLNTKHPG 200 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~----k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~e~~~~ 200 (328)
++||+...+ +++|++++|+++||+|+.+.+++.. ++++|++.||.|+||+|+ ++|.+|+||.+|++||++++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 579998765 7999999999999999999998753 447899999999999998 6889999999999999999987
Q ss_pred CCCCC-CCChhhhhHHHHHHHHHHHH-HHHHHHhhhcCc--ch-hHHHHHHHHHHHHHHHHHHhhC----CCcE-Eeeee
Q psy8000 201 PRPLC-HQDAFYQNDDNVMLAEEFEH-VAWGLRDCLMVD--HI-TDELYTNLTTALKWFERELTKR----QTIY-WFDYM 270 (328)
Q Consensus 201 ~~~L~-P~dp~~erA~~~~~~~~~~~-i~~~~~~~~~~~--~~-~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~ 270 (328)
. +++ |.++. +|++++.|..+..+ +.+.+...+... +. .+...+.+.+.|+.+|+.|+++ |+.+ +||++
T Consensus 80 ~-~l~~p~~~~-~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 80 R-QLLAPVGSL-SRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAY 157 (201)
T ss_pred c-ccCCCCCcH-HHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHH
Confidence 6 666 66777 99999999988754 555444443321 11 2445677899999999999762 2223 99999
Q ss_pred cHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCC
Q psy8000 271 MWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQP 318 (328)
Q Consensus 271 L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~ 318 (328)
+++++.+..... .+.+.||+|.+|+++|.++|++|+++..
T Consensus 158 l~~~~~~~~~~~--------~~~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 158 LFTVLRWAYAVK--------LNLEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHHhhccC--------CCcccchHHHHHHHHHHcCHHHHHHHHH
Confidence 999987764332 2246799999999999999999999854
No 12
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.95 E-value=1.3e-26 Score=212.90 Aligned_cols=185 Identities=15% Similarity=0.187 Sum_probs=143.6
Q ss_pred eCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC--CCCCCCC
Q psy8000 131 QRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGP--RPLCHQD 208 (328)
Q Consensus 131 ~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~--~~L~P~d 208 (328)
...||||+||+++|.+|||+|+.+.+|+.+++++|+++||.|+||+|+++|.+|+||.+|++||+++++.+ ..+.|.+
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~ 95 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKH 95 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 45899999999999999999999999999889999999999999999999999999999999999999752 1456666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhcCc--chhHHHHHHHHHHHHHHHHHHhhC----------------CCcE-----
Q psy8000 209 AFYQNDDNVMLAEEFEHVAWGLRDCLMVD--HITDELYTNLTTALKWFERELTKR----------------QTIY----- 265 (328)
Q Consensus 209 p~~erA~~~~~~~~~~~i~~~~~~~~~~~--~~~e~~~~~l~~~L~~LE~~L~~~----------------g~~F----- 265 (328)
+. .++.. .+++..+..++.+. +..+...+++.++|+.||+.|.+. +++|
T Consensus 96 ~~-~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~ 167 (236)
T TIGR00862 96 PE-SNTAG-------LDIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDE 167 (236)
T ss_pred HH-HHHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCc
Confidence 65 44432 12333333333332 234455566999999999999731 3566
Q ss_pred --EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhhhhhh
Q psy8000 266 --WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPESYVVS 325 (328)
Q Consensus 266 --lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~~~~~ 325 (328)
+|||+++|++.++..+... ..++.+ .++||+|.+|++++.++|+|++++++.+..+..
T Consensus 168 ~tlaD~~l~p~l~~l~~~~~~-~~~~~i-~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~ 227 (236)
T TIGR00862 168 LTLADCNLLPKLHIVKVVAKK-YRNFDI-PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELA 227 (236)
T ss_pred cchhhHHHHHHHHHHHHHHHH-HhCcCc-cccCchHHHHHHHHhccchHHhhCCChHHHHHH
Confidence 9999999999998865211 112323 588999999999999999999999988766543
No 13
>PLN02378 glutathione S-transferase DHAR1
Probab=99.95 E-value=8.4e-27 Score=210.67 Aligned_cols=178 Identities=22% Similarity=0.248 Sum_probs=138.1
Q ss_pred eCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCChh
Q psy8000 131 QRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGPRPLCHQDAF 210 (328)
Q Consensus 131 ~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~~~L~P~dp~ 210 (328)
...||||+||+++|+++|++|+.+.+|+.+++++|++.||.|+||+|+++|.+|+||.+|++||++++++. .+ .++.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~-~l--~~~~ 93 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDP-PL--KTPA 93 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCC-CC--CCHH
Confidence 45699999999999999999999999998899999999999999999999999999999999999999865 55 3555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccc
Q psy8000 211 YQNDDNVMLAEEFEHVAWGLRDCLMVDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPV 283 (328)
Q Consensus 211 ~erA~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~ 283 (328)
+++.++..+ ...+..+.......+...+.+.+.|+.+|+.|+.++++| +||+++++++.++.....
T Consensus 94 -~~a~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~ 166 (213)
T PLN02378 94 -EFASVGSNI------FGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALG 166 (213)
T ss_pred -HHHHHHHHH------HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHH
Confidence 777655332 222222322222234455678889999999998533556 999999999888654321
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChh
Q psy8000 284 HSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPE 320 (328)
Q Consensus 284 ~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~ 320 (328)
....+.. .++||+|.+|+++|.+||++++++.+..
T Consensus 167 -~~~~~~~-~~~~p~l~~w~~~~~~rpa~~~~~~~~~ 201 (213)
T PLN02378 167 -HFKSWSV-PESFPHVHNYMKTLFSLDSFEKTKTEEK 201 (213)
T ss_pred -HhcCCCc-hhHhHHHHHHHHHHhcCCCeecccCChH
Confidence 1112222 3689999999999999999999987654
No 14
>PRK11752 putative S-transferase; Provisional
Probab=99.94 E-value=4e-26 Score=213.11 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=147.4
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHHC------CCceeEEEecCC---CCchhhhhhCCCCCccEEEeC----CEeeccHH
Q psy8000 122 SLDFIRFYSQRFCAFSHRVHLILYAN------NITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHM----DIPITDSL 188 (328)
Q Consensus 122 ~~~~l~LY~~~~cP~a~RVrl~L~ek------GIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~----g~vL~ES~ 188 (328)
+...++||+.. ||+|+||+++|+|+ |++|+.+.+++. +++++|+++||.|+||+|+++ |.+|+||.
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 45689999975 99999999999997 899999999874 356789999999999999964 36899999
Q ss_pred HHHHHHhhhCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHH----HHhhh-cCcc----hhHHHHHHHHHHHHHHHHHHh
Q psy8000 189 LICDYLNTKHPGPRPLCHQDAFYQNDDNVMLAEEFEHVAWG----LRDCL-MVDH----ITDELYTNLTTALKWFERELT 259 (328)
Q Consensus 189 aIl~YL~e~~~~~~~L~P~dp~~erA~~~~~~~~~~~i~~~----~~~~~-~~~~----~~e~~~~~l~~~L~~LE~~L~ 259 (328)
+|++||+++++ +|+|.++. +|++++.|+.+.....+. +..++ ..++ ..+....++.+.|+.+|++|+
T Consensus 120 AIl~YL~~~~~---~L~P~~~~-era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~ 195 (264)
T PRK11752 120 AILLYLAEKFG---AFLPKDLA-ARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLA 195 (264)
T ss_pred HHHHHHHHhcC---CcCCCCHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999986 58999998 999999999887652221 11111 1121 234456678899999999997
Q ss_pred hC----CCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChh
Q psy8000 260 KR----QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPE 320 (328)
Q Consensus 260 ~~----g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~ 320 (328)
++ |+.| +|||++++++.++..........+ .+.++||+|.+|+++|.+||++|++.....
T Consensus 196 ~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~-~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~ 260 (264)
T PRK11752 196 EHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEF-LDVGSYKHVQRWAKEIAERPAVKRGRIVNR 260 (264)
T ss_pred cCCCCCCCccCHHHHHHHHHHHHHhhccccccccc-cCcccCHHHHHHHHHHHhCHHHHHHHhccc
Confidence 62 3334 999999998877643211100011 134689999999999999999999987654
No 15
>PLN02395 glutathione S-transferase
Probab=99.94 E-value=2.1e-26 Score=207.01 Aligned_cols=187 Identities=17% Similarity=0.133 Sum_probs=145.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGP 201 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~ 201 (328)
.++||+...| +++|++++|+++||+|+.+.+++. +++++|++.||.|+||+|+++|.+|+||.+|++||+++++..
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 4799997664 699999999999999999999874 567889999999999999999999999999999999999753
Q ss_pred C-CCCCCChhhhhHHHHHHHHHHHH-HHHHH----Hhh-h----c-C--cchhHHHHHHHHHHHHHHHHHHhhC----CC
Q psy8000 202 R-PLCHQDAFYQNDDNVMLAEEFEH-VAWGL----RDC-L----M-V--DHITDELYTNLTTALKWFERELTKR----QT 263 (328)
Q Consensus 202 ~-~L~P~dp~~erA~~~~~~~~~~~-i~~~~----~~~-~----~-~--~~~~e~~~~~l~~~L~~LE~~L~~~----g~ 263 (328)
+ +|+|.++. +++++++|..+.+. +.+.+ ... + . . ++..+...+++.+.++.||+.|+++ |+
T Consensus 81 ~~~l~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 159 (215)
T PLN02395 81 GPDLLGKTIE-ERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYLAGD 159 (215)
T ss_pred CcCcCCCChh-HHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Confidence 1 59999988 99999999988764 22221 111 1 0 1 1124556778899999999999752 23
Q ss_pred cE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCC
Q psy8000 264 IY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQP 318 (328)
Q Consensus 264 ~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~ 318 (328)
.+ +||+++++++.+..... ... ...++||+|.+|+++|.+||++|+++..
T Consensus 160 ~~s~ADi~l~~~~~~~~~~~---~~~--~~~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 160 FVSLADLAHLPFTEYLVGPI---GKA--YLIKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred CcCHHHHHHHHHHHHHhccc---chh--hhhccCchHHHHHHHHHcChHHHHHHHH
Confidence 33 99999999887653210 010 1246799999999999999999998853
No 16
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.5e-26 Score=202.74 Aligned_cols=179 Identities=21% Similarity=0.284 Sum_probs=143.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC--CCchhhhhhCCCCCccEEEeCCE-eeccHHHHHHHHhhhCCCCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA--NKPKWFLDRFFPPKVPLIQHMDI-PITDSLLICDYLNTKHPGPR 202 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~--~k~e~~l~~nP~GkVPvL~d~g~-vL~ES~aIl~YL~e~~~~~~ 202 (328)
++||+.+.||||+||+++|.++|++|+.+.++.. .++++|++.||.|+||+|+++|. +|+||.+|++||+++++++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~- 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP- 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC-
Confidence 5899999999999999999999999999999987 57889999999999999996654 8999999999999999876
Q ss_pred CCCCCChhh--hhHHHHHHHHHHHH-HHHHHHhhhcC---------cchhHHHHHHHHHHHHHHHHHHhhC----CCcE-
Q psy8000 203 PLCHQDAFY--QNDDNVMLAEEFEH-VAWGLRDCLMV---------DHITDELYTNLTTALKWFERELTKR----QTIY- 265 (328)
Q Consensus 203 ~L~P~dp~~--erA~~~~~~~~~~~-i~~~~~~~~~~---------~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F- 265 (328)
+|+|.++.. +|++...|..++.. +.+.+...... ....+...+.+.+.++.+|+.|+++ |..|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 159 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFT 159 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCC
Confidence 599988741 56666678777754 33333332111 1234567788999999999999862 3344
Q ss_pred EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhH
Q psy8000 266 WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVK 313 (328)
Q Consensus 266 lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k 313 (328)
+||+.+++.+.++..... ..++||++.+|++||.++|+++
T Consensus 160 iAD~~~~~~~~~~~~~~~--------~~~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 160 IADIALAPLLWRLALLGE--------ELADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHHhhhcCc--------ccccChHHHHHHHHHHcCCchh
Confidence 999999999988654432 2367999999999999999965
No 17
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.93 E-value=3.3e-25 Score=207.04 Aligned_cols=178 Identities=20% Similarity=0.221 Sum_probs=139.4
Q ss_pred eCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCChh
Q psy8000 131 QRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGPRPLCHQDAF 210 (328)
Q Consensus 131 ~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~~~L~P~dp~ 210 (328)
...||||+|++++|+++||+|+.+.+++.++++||+++||.|+||+|+++|.+|+||.+|++||+++++++ .|. ++.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~-~L~--~~~ 146 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDP-PLA--TPP 146 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCC-CCC--CHH
Confidence 44599999999999999999999999998899999999999999999988899999999999999999876 564 556
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccc
Q psy8000 211 YQNDDNVMLAEEFEHVAWGLRDCLMVDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPV 283 (328)
Q Consensus 211 ~erA~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~ 283 (328)
+++.++.++. ..+..++..++..+...+++.+.|+.||+.|+++ ++| +|||+++|.+.++.....
T Consensus 147 -era~i~~~l~------~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~-g~yl~Gd~~SlADi~l~p~L~~l~~~~~ 218 (265)
T PLN02817 147 -EKASVGSKIF------STFIGFLKSKDPGDGTEQALLDELTSFDDYIKEN-GPFINGEKISAADLSLGPKLYHLEIALG 218 (265)
T ss_pred -HHHHHHHHHH------HHHHHHhccCCcchHHHHHHHHHHHHHHHHHhcC-CCeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888765432 2222333333322334467888899999999853 456 999999999988764321
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhh
Q psy8000 284 HSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPES 321 (328)
Q Consensus 284 ~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~ 321 (328)
+...|.+ .++||+|.+|+++|.++|+|+++.+..+.
T Consensus 219 -~~~~~~i-~~~~P~L~~w~~ri~~rps~~~~~~~~~~ 254 (265)
T PLN02817 219 -HYKNWSV-PDSLPFVKSYMKNIFSMESFVKTRALPED 254 (265)
T ss_pred -HhcCCCc-cccCHHHHHHHHHHhcchhHhhcCCCHHH
Confidence 1112322 46899999999999999999999987654
No 18
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.91 E-value=9.3e-24 Score=189.51 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=133.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhh--------hhCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFL--------DRFFPPKVPLIQHMDIPITDSLLICDYLNT 196 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l--------~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e 196 (328)
.++||+++.++.+++||++|+++|++|+.+.++. .++ .++ +.||.|+||+|+++|.+|+||.||++||++
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~~-~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~ 81 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NGD-AFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSK 81 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cch-HHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHH
Confidence 4899999999999999999999999999997753 222 332 479999999999999999999999999999
Q ss_pred hCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHhh-hcCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------Eee
Q psy8000 197 KHPGPRPLCHQDAFYQNDDNVMLAEEFEHVAWGLRDC-LMVDHITDELYTNLTTALKWFERELTKRQTIY-------WFD 268 (328)
Q Consensus 197 ~~~~~~~L~P~dp~~erA~~~~~~~~~~~i~~~~~~~-~~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lAD 268 (328)
+++ +.+.+.. +++.++.+...+.++...+... ...++..+...+.+.+.|+.+|+.|+++|++| +||
T Consensus 82 ~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD 156 (205)
T PTZ00057 82 KYK----ICGESEL-NEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYAD 156 (205)
T ss_pred HcC----CCCCCHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHH
Confidence 995 3455543 4444443333222332222111 11112234456778899999999998755566 899
Q ss_pred eecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCCh
Q psy8000 269 YMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPP 319 (328)
Q Consensus 269 i~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~ 319 (328)
+++++++.++.... +.+.++||+|.+|++||.++|++|+++.++
T Consensus 157 ~~l~~~~~~~~~~~-------~~~l~~~P~l~~~~~r~~~~P~~k~y~~~~ 200 (205)
T PTZ00057 157 LAVFNLYDDIETKY-------PNSLKNFPLLKAHNEFISNLPNIKNYISNR 200 (205)
T ss_pred HHHHHHHHHHHHhC-------hhhhccChhHHHHHHHHHhChHHHHHHHhC
Confidence 99999887764211 123578999999999999999999998654
No 19
>PRK10387 glutaredoxin 2; Provisional
Probab=99.90 E-value=5.1e-23 Score=184.20 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=127.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLNTKHPGPRPL 204 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~e~~~~~~~L 204 (328)
++||++..||+|+|||++|+++||+|+.+.++.... ..-.+.||.|+||+|+ ++|.+++||.+|++||+++|+++ +
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~--~ 77 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDE-ATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP--L 77 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCch-hhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc--c
Confidence 589999999999999999999999999998865422 2225789999999995 88999999999999999999864 3
Q ss_pred CCCChhhhhHHHHHHHHHHHH-HHHHHHhhhc----C----cc---------------------hhHHHHHHHHHHHHHH
Q psy8000 205 CHQDAFYQNDDNVMLAEEFEH-VAWGLRDCLM----V----DH---------------------ITDELYTNLTTALKWF 254 (328)
Q Consensus 205 ~P~dp~~erA~~~~~~~~~~~-i~~~~~~~~~----~----~~---------------------~~e~~~~~l~~~L~~L 254 (328)
++ .+ +++.++.|..+... +...++..+. . +. ..++..+++.+.|+.+
T Consensus 78 l~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (210)
T PRK10387 78 LT-GK--RSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRAL 154 (210)
T ss_pred CC-Cc--ccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHH
Confidence 43 22 67788888877653 2222211110 0 00 0134567888999999
Q ss_pred HHHHhhC---CCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhH
Q psy8000 255 ERELTKR---QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVK 313 (328)
Q Consensus 255 E~~L~~~---g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k 313 (328)
|++|++. |+.+ +||+++++++.++..... + +.+|+|.+|++||.+||++.
T Consensus 155 e~~L~~~~l~G~~~s~ADi~l~~~l~~~~~~~~-------~--~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 155 DPLIVKPNAVNGELSTDDIHLFPILRNLTLVKG-------I--EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHhcCccccCCCCCHHHHHHHHHHhcceeecC-------C--CCCHHHHHHHHHHHHHhCCC
Confidence 9999631 2223 999999999888764321 1 24699999999999999863
No 20
>KOG0867|consensus
Probab=99.89 E-value=1.2e-22 Score=185.56 Aligned_cols=187 Identities=17% Similarity=0.106 Sum_probs=151.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecC---CCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCC-C
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINT---ANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHP-G 200 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~---~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~-~ 200 (328)
.++||+.+.+|.|+|+.+++.++|++++.+.+++ .+++++|+++||.|+||+|+|+|..++||.||++||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999998876 47889999999999999999999999999999999999997 2
Q ss_pred CCCCCCCChhhhhHHHHHHHHHHHH-HHHHH--Hhhh-----c---CcchhHHHHHHHHHHHHHHHHHHhhC----CCcE
Q psy8000 201 PRPLCHQDAFYQNDDNVMLAEEFEH-VAWGL--RDCL-----M---VDHITDELYTNLTTALKWFERELTKR----QTIY 265 (328)
Q Consensus 201 ~~~L~P~dp~~erA~~~~~~~~~~~-i~~~~--~~~~-----~---~~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F 265 (328)
.+.|+|.++. +||.+++|+.+.++ +.+.. ...+ . .....+....++.+.++.+|+.|.++ |..+
T Consensus 82 ~~~l~p~~~~-~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 82 GGILLPKDLK-ERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CcccCCcCHH-HHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 2139999998 99999999988776 33331 1211 1 12246778899999999999999872 3333
Q ss_pred -EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcC
Q psy8000 266 -WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQ 317 (328)
Q Consensus 266 -lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~ 317 (328)
+||+.+.+.+..+.. ... .. ....+||++.+|++++.++|+++++..
T Consensus 161 tlADl~~~~~~~~~~~-~~~-~~---~~~~~~p~v~~W~~~~~~~P~~~e~~~ 208 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG-KFA-TE---KDFEKYPKVARWYERIQKRPAYEEANE 208 (226)
T ss_pred cHHHHHHhhHHHHHhH-hhh-hh---hhhhhChHHHHHHHHHHhCccHHHHHH
Confidence 999999999888742 111 11 246789999999999999999888664
No 21
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.88 E-value=5.8e-22 Score=178.69 Aligned_cols=170 Identities=16% Similarity=0.235 Sum_probs=124.8
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCC
Q psy8000 127 RFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLNTKHPGPRPLC 205 (328)
Q Consensus 127 ~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~e~~~~~~~L~ 205 (328)
+||....||||+|||++|.++|++|+.+.++.... ....+.||.|+||+|+ ++|.+++||.+|++||+++|+.+ ++
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~--~~ 77 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEP--LL 77 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCc--cC
Confidence 58999999999999999999999999987754322 2347899999999998 89999999999999999999764 33
Q ss_pred CCChhhhhHHHHHHHHHHHHHH-HHHHhhhc------------------Ccc-----------hhHHHHHHHHHHHHHHH
Q psy8000 206 HQDAFYQNDDNVMLAEEFEHVA-WGLRDCLM------------------VDH-----------ITDELYTNLTTALKWFE 255 (328)
Q Consensus 206 P~dp~~erA~~~~~~~~~~~i~-~~~~~~~~------------------~~~-----------~~e~~~~~l~~~L~~LE 255 (328)
+.. .+++++.|..++.... ..+...+. .++ ..++..+.+.+.|+.+|
T Consensus 78 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le 154 (209)
T TIGR02182 78 TGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELD 154 (209)
T ss_pred CCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHH
Confidence 322 4566777776655422 12111110 000 01456678889999999
Q ss_pred HHHhhC---CCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCH-HHHHHHHHHhccHhh
Q psy8000 256 RELTKR---QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFP-RLLRWEMKMLDDTAV 312 (328)
Q Consensus 256 ~~L~~~---g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP-~L~aW~~rm~~rPs~ 312 (328)
++|+++ |+.| +||+.+++++.++..... .++| +|.+|++||++|+++
T Consensus 155 ~~L~~~~~l~g~~TiADi~l~~~l~~~~~~~~----------~~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 155 KLIDGPNAVNGELSEDDILVFPLLRNLTLVAG----------INWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHhCccccCCCCCHHHHHHHHHhcCeeeecC----------CCCChHHHHHHHHHHHHhCC
Confidence 999763 2334 999999999877653221 1256 999999999999875
No 22
>KOG1422|consensus
Probab=99.81 E-value=7.4e-19 Score=155.16 Aligned_cols=179 Identities=17% Similarity=0.270 Sum_probs=150.1
Q ss_pred CCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCC-CChh
Q psy8000 132 RFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGPRPLCH-QDAF 210 (328)
Q Consensus 132 ~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~~~L~P-~dp~ 210 (328)
.-||||||+.+.|.++|++|++..||+..+++||+++.|.|++|+|..++.+++||..|-++|++.++.+ ++-- .++
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p-~~~~~~~~- 96 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPP-KLPTLAPP- 96 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCC-CCcccCCH-
Confidence 4799999999999999999999999999999999999999999999999999999999999999999876 3221 133
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh-cCcch-hHHHHHHHHHHHHHHHHHHhh-CCCcE-------EeeeecHHHHHHHhh
Q psy8000 211 YQNDDNVMLAEEFEHVAWGLRDCL-MVDHI-TDELYTNLTTALKWFERELTK-RQTIY-------WFDYMMWPWFERMAA 280 (328)
Q Consensus 211 ~erA~~~~~~~~~~~i~~~~~~~~-~~~~~-~e~~~~~l~~~L~~LE~~L~~-~g~~F-------lADi~L~p~L~r~~~ 280 (328)
|. .....+++..+..++ .++++ .+...+.+.+.|.+|++.|+. +.++| .||+.|.|-|..+.+
T Consensus 97 -E~------asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~v 169 (221)
T KOG1422|consen 97 -ES------ASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKV 169 (221)
T ss_pred -HH------HhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHH
Confidence 22 233456777777775 44443 445567899999999999997 56888 999999999999987
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhh
Q psy8000 281 IPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPES 321 (328)
Q Consensus 281 ~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~ 321 (328)
+. .++++|.++ ++++++++|++.++++.+|..+.++.+.
T Consensus 170 a~-k~yk~~~IP-~~lt~V~rYl~~~ya~d~F~~tcp~d~e 208 (221)
T KOG1422|consen 170 AA-KHYKNFEIP-ASLTGVWRYLKNAYARDEFTNTCPADQE 208 (221)
T ss_pred HH-HHhcCCCCc-hhhhHHHHHHHHHHhHHHhhcCCchHHH
Confidence 75 356778764 7899999999999999999999987764
No 23
>KOG4420|consensus
Probab=99.80 E-value=6.2e-19 Score=159.77 Aligned_cols=200 Identities=17% Similarity=0.213 Sum_probs=142.0
Q ss_pred CCCCCCCCcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecC---CCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHH
Q psy8000 117 EEPHWSLDFIRFYSQRFCAFSHRVHLILYANNITHDTVYINT---ANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDY 193 (328)
Q Consensus 117 ~~~~~~~~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~---~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~Y 193 (328)
+++||....+.||..+.|--+||||++++||||+++...|++ +++++||+..||.|.||||+++..+|.||..|++|
T Consensus 18 ~ka~~~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdY 97 (325)
T KOG4420|consen 18 SKAHWPRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDY 97 (325)
T ss_pred cCCCCchhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHH
Confidence 345666666999999999999999999999999999988887 47889999999999999999999999999999999
Q ss_pred HhhhCCCCCCCCCCChhh--hhHHH----------HHHHHH--H------HHHHHH--------------HHhhhcC--c
Q psy8000 194 LNTKHPGPRPLCHQDAFY--QNDDN----------VMLAEE--F------EHVAWG--------------LRDCLMV--D 237 (328)
Q Consensus 194 L~e~~~~~~~L~P~dp~~--erA~~----------~~~~~~--~------~~i~~~--------------~~~~~~~--~ 237 (328)
+++.|-+...|.|+-.-. .|-.+ +.|..- + ....|. +.+.... +
T Consensus 98 vErtf~ger~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~p 177 (325)
T KOG4420|consen 98 VERTFTGERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEP 177 (325)
T ss_pred HHHhhcccccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999997654677742100 11111 111110 0 000000 0000000 0
Q ss_pred c-----------------------hhHHHHHHHHHHHHHHHHHHhhC--------CCcE-EeeeecHHHHHHHhhccccc
Q psy8000 238 H-----------------------ITDELYTNLTTALKWFERELTKR--------QTIY-WFDYMMWPWFERMAAIPVHS 285 (328)
Q Consensus 238 ~-----------------------~~e~~~~~l~~~L~~LE~~L~~~--------g~~F-lADi~L~p~L~r~~~~~~~~ 285 (328)
+ ...+...++...|+.+|+.|..+ |..| +||+++.++|.|+..++..
T Consensus 178 dla~ay~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e- 256 (325)
T KOG4420|consen 178 DLAEAYLAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLE- 256 (325)
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccH-
Confidence 0 12233455666778888888763 4455 9999999999999877631
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCCh
Q psy8000 286 RYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPP 319 (328)
Q Consensus 286 ~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~ 319 (328)
.+.|+ ..+.|+|.+|++|+++|++|++++.+.
T Consensus 257 ~~yw~--~gsrpnle~Yf~rvrrR~sf~kvlg~~ 288 (325)
T KOG4420|consen 257 KKYWE--DGSRPNLESYFERVRRRFSFRKVLGDI 288 (325)
T ss_pred HHhcc--cCCCccHHHHHHHHHhhhHHHHhhhhH
Confidence 12232 346799999999999999999998764
No 24
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.76 E-value=1.8e-18 Score=136.13 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=67.5
Q ss_pred eCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy8000 131 QRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGP 201 (328)
Q Consensus 131 ~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~ 201 (328)
...||||||+|++|++|||+|+.+.+|+.++++||+++||.|+||+|+++|.+++||.+|++||++.++.+
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999998754
No 25
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.76 E-value=2e-18 Score=130.72 Aligned_cols=74 Identities=30% Similarity=0.411 Sum_probs=71.2
Q ss_pred EEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCC
Q psy8000 128 FYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGP 201 (328)
Q Consensus 128 LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~ 201 (328)
||++.+||||+|+|++|+++||+|+.+.++...+++++.+.||.|+||+|+++|.+++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999988888999999999999999999999999999999999999865
No 26
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.76 E-value=3.8e-18 Score=133.68 Aligned_cols=86 Identities=40% Similarity=0.794 Sum_probs=77.4
Q ss_pred hhhccCCCCCCCCCCCCCCcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeC-CEee
Q psy8000 106 KHLSANDSDQHEEPHWSLDFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHM-DIPI 184 (328)
Q Consensus 106 ~~~~~~~~~p~~~~~~~~~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~-g~vL 184 (328)
+++.++++.+ ++ ..++++||+.+.||||+|++++|+++|++|+.+.++...+++++.+.||.|+||+|+++ |..+
T Consensus 3 ~~~~~~~~~~--~~--~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l 78 (89)
T cd03055 3 KHLAKGSAEP--PP--VPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVV 78 (89)
T ss_pred cccccCCCCC--CC--CCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEE
Confidence 4566777665 44 78999999999999999999999999999999999987777889999999999999965 8999
Q ss_pred ccHHHHHHHHh
Q psy8000 185 TDSLLICDYLN 195 (328)
Q Consensus 185 ~ES~aIl~YL~ 195 (328)
+||.+|++||+
T Consensus 79 ~eS~aI~~yLe 89 (89)
T cd03055 79 YESLIICEYLD 89 (89)
T ss_pred ECHHHHHHhhC
Confidence 99999999996
No 27
>KOG1695|consensus
Probab=99.76 E-value=1.7e-17 Score=148.98 Aligned_cols=183 Identities=14% Similarity=0.214 Sum_probs=147.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCC
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGPRPL 204 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~~~L 204 (328)
.|+|+++.....++-+|++++..|++||.+.+...+.-+......|.|++|+|..||..|.+|.||+|||+++| .|
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~----gl 78 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKF----GL 78 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHh----Cc
Confidence 58999999999999999999999999999999866521112445899999999999999999999999999999 58
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHh-hhcCc------chhH-HHHHHHHHHHHHHHHHHhhCCCcE-------Eeee
Q psy8000 205 CHQDAFYQNDDNVMLAEEFEHVAWGLRD-CLMVD------HITD-ELYTNLTTALKWFERELTKRQTIY-------WFDY 269 (328)
Q Consensus 205 ~P~dp~~erA~~~~~~~~~~~i~~~~~~-~~~~~------~~~e-~~~~~l~~~L~~LE~~L~~~g~~F-------lADi 269 (328)
.+.++. ++|+++++.+.+.++...+.. ..... +..+ .......+.+..+++.|..+++.| +||+
T Consensus 79 ~Gkt~~-E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl 157 (206)
T KOG1695|consen 79 AGKTEE-EEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWADL 157 (206)
T ss_pred CCCCHH-HHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHHHH
Confidence 899999 999999999988886665333 22211 1122 344567778899999999776678 8999
Q ss_pred ecHHHHHHHhhc-cccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCCh
Q psy8000 270 MMWPWFERMAAI-PVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPP 319 (328)
Q Consensus 270 ~L~p~L~r~~~~-~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~ 319 (328)
.++-.+..+... .. ...+.+|+|.++.+++.++|.+|+.+..+
T Consensus 158 ~i~e~l~~l~~~~~~-------~~~~~~P~L~a~~~kv~~~p~ik~~i~~r 201 (206)
T KOG1695|consen 158 VIAEHLDTLEELLDP-------SALDHFPKLKAFKERVSSIPNIKKYLESR 201 (206)
T ss_pred HHHHHHHHHHHhcCc-------hhhccChHHHHHHHHHhcCchHHHHHhcC
Confidence 999888877663 21 11467899999999999999999998654
No 28
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.74 E-value=8.8e-18 Score=125.65 Aligned_cols=73 Identities=22% Similarity=0.396 Sum_probs=69.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKH 198 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~ 198 (328)
++||+.+.||+|+|++++|+++|++|+.+.++..++++++++.||.|+||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988888899999999999999999999999999999999875
No 29
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.73 E-value=1.6e-17 Score=125.59 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=65.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
++||++..||+|+|||++|+++|++|+.+.+++. +++++|++.||.|+||+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999873 567889999999999999999999999999999995
No 30
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.72 E-value=2.4e-17 Score=124.16 Aligned_cols=73 Identities=23% Similarity=0.394 Sum_probs=68.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCC-CCccEEEeCCEeeccHHHHHHHHhhhC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFP-PKVPLIQHMDIPITDSLLICDYLNTKH 198 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~-GkVPvL~d~g~vL~ES~aIl~YL~e~~ 198 (328)
++||+++.||+|+|+|++|+++|++|+.+.++...++++|++.||. |+||+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988888899999995 999999999999999999999999864
No 31
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=2.6e-17 Score=125.38 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=66.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEe--CCEeeccHHHHHHHHhhhC
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQH--MDIPITDSLLICDYLNTKH 198 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d--~g~vL~ES~aIl~YL~e~~ 198 (328)
+++||+++.||||+||+++|.++||+|+.+.++... ..+++++.||.|+||+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 479999999999999999999999999999886542 4567899999999999995 4789999999999999875
No 32
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.70 E-value=5.4e-17 Score=121.43 Aligned_cols=68 Identities=26% Similarity=0.330 Sum_probs=64.7
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEe-CCEeeccHHHHHHHH
Q psy8000 127 RFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQH-MDIPITDSLLICDYL 194 (328)
Q Consensus 127 ~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d-~g~vL~ES~aIl~YL 194 (328)
+||+..+||||+|++++|+++|++|+.+.+++.+++++|++.||.|+||+|++ +|..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 79999999999999999999999999999998888889999999999999996 599999999999996
No 33
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.69 E-value=1.2e-16 Score=120.62 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=67.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTK 197 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~ 197 (328)
++||+.+.||+|+|+|++|+++|++|+.+.++.. +++++|.+.||.|+||+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7899999999999999999999999999998874 45688999999999999999999999999999999874
No 34
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.69 E-value=9.9e-17 Score=120.33 Aligned_cols=71 Identities=20% Similarity=0.081 Sum_probs=65.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNT 196 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e 196 (328)
++||+++.||+|+|++++|+++|++|+.+.+++. ++.++|++.||.|+||+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999864 3458899999999999999999999999999999975
No 35
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.68 E-value=7.5e-17 Score=120.76 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=57.0
Q ss_pred CChhHHHHHHHHHHCCCceeEEEecC----CCCchhhhhhCCCCCccEEEe-CCEeeccHHHHHHHHhhh
Q psy8000 133 FCAFSHRVHLILYANNITHDTVYINT----ANKPKWFLDRFFPPKVPLIQH-MDIPITDSLLICDYLNTK 197 (328)
Q Consensus 133 ~cP~a~RVrl~L~ekGIpye~v~vd~----~~k~e~~l~~nP~GkVPvL~d-~g~vL~ES~aIl~YL~e~ 197 (328)
+||||+|++++|+++||+++...++. ..++++|.+.||.|+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 69999999999999999999988844 345689999999999999996 889999999999999974
No 36
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.67 E-value=2.9e-16 Score=118.78 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=67.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC---CchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN---KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKH 198 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~---k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~ 198 (328)
++||+++.||+|++++++|+++|++|+.+.++... +.+++.+.||.|+||+|+++|.+++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 47999999999999999999999999999998643 45689999999999999999999999999999999875
No 37
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.67 E-value=3.1e-16 Score=120.07 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=67.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeC---CEeeccHHHHHHHHhhhC
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHM---DIPITDSLLICDYLNTKH 198 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~---g~vL~ES~aIl~YL~e~~ 198 (328)
+++||+.+. |+|+|++++|+++||+|+.+.+++. +++++|++.||.|+||+|+++ |..|+||.+|++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 479999985 9999999999999999999999863 566889999999999999976 899999999999999998
Q ss_pred C
Q psy8000 199 P 199 (328)
Q Consensus 199 ~ 199 (328)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 5
No 38
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=4.1e-16 Score=116.30 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=65.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
++||+.+.||+|+|++++|+++|++|+.+.+++. +++++|.+.||.|+||+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999863 467889999999999999999999999999999984
No 39
>PLN02907 glutamate-tRNA ligase
Probab=99.65 E-value=1.2e-15 Score=159.61 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=119.6
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLNTKHPGPRPL 204 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~e~~~~~~~L 204 (328)
++||+.+.++ +.++.++|++.|++|+.+. .+|.|+||+|+ ++|..|+||.||++||++.++.. .|
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~-~L 68 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP-GF 68 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc-CC
Confidence 6899998775 7789999999999999865 26899999999 68899999999999999999877 79
Q ss_pred CCCChhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHH
Q psy8000 205 CHQDAFYQNDDNVMLAEEFEHVAWGLRDCLMVDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFER 277 (328)
Q Consensus 205 ~P~dp~~erA~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r 277 (328)
+|.++. ++++++.|+.+...+.. ...+.+.|+.||++|+. ++| +|||++++.+..
T Consensus 69 ~p~d~~-erAqV~qWL~~~~~~~~---------------~~~l~~~L~~LE~~L~~--rtYLvGd~lTLADIaL~~~L~~ 130 (722)
T PLN02907 69 YGQDAF-ESSQVDEWLDYAPTFSS---------------GSEFENACEYVDGYLAS--RTFLVGYSLTIADIAIWSGLAG 130 (722)
T ss_pred CCCCHH-HHHHHHHHHHHHhhccc---------------HHHHHHHHHHHHHHhcc--CCeecCCCCCHHHHHHHHHHHh
Confidence 999998 99999999988764221 02356778999999976 455 999999988755
Q ss_pred HhhccccccCCCCCCCCCCHHHHHHHHHHhccHh
Q psy8000 278 MAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTA 311 (328)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs 311 (328)
...... .. . ..+.||+|.+|+++|.++|+
T Consensus 131 ~~~~~~--~~--~-~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 131 SGQRWE--SL--R-KSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred hhhhhh--cc--c-ccccCHHHHHHHHHHHhCCC
Confidence 411110 00 0 14689999999999999999
No 40
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.65 E-value=4.2e-16 Score=116.92 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=65.6
Q ss_pred EEEEEeCCChhHHHHHHHHHH--CCCceeEEEecCCCCchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYA--NNITHDTVYINTANKPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~e--kGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~ 195 (328)
++||+++.||+|+|+|++|++ +|++|+.+.++...+++++++.||.|+||+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 89999999999877788999999999999998 68899999999999986
No 41
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.64 E-value=4.4e-16 Score=117.36 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=66.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTK 197 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~ 197 (328)
++||+++.|++|+|+|++|+++|++|+.+.++..++++++.+.||.|+||+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 799999999999999999999999999999987655667889999999999999999999999999999863
No 42
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.64 E-value=5.7e-16 Score=115.52 Aligned_cols=70 Identities=26% Similarity=0.435 Sum_probs=64.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~ 195 (328)
++||+.+.||+|+|+|++|+++|++|+.+.++.. .+.+++.+.||.|+||+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998863 3567899999999999999 58889999999999996
No 43
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.64 E-value=7.5e-16 Score=116.52 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=65.4
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCceeEEEecCC--CCchhhhhhCCCCCccEEEe-CCEeeccHHHHHHHHhh
Q psy8000 127 RFYSQRFCAFSHRVHLILYANNITHDTVYINTA--NKPKWFLDRFFPPKVPLIQH-MDIPITDSLLICDYLNT 196 (328)
Q Consensus 127 ~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~--~k~e~~l~~nP~GkVPvL~d-~g~vL~ES~aIl~YL~e 196 (328)
+||+++.||+|+|++++|+++|++|+.+.++.. +++++|++.||.|+||+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 56789999999999999995 58899999999999986
No 44
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.64 E-value=6.7e-16 Score=115.29 Aligned_cols=70 Identities=16% Similarity=0.344 Sum_probs=61.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeC-CEeeccHHHHHHHHhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHM-DIPITDSLLICDYLNT 196 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~-g~vL~ES~aIl~YL~e 196 (328)
++||++..||||+|+|++|.++|++|+.+.++... ....++.+|.|+||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 57999999999999999999999999999887542 2344678999999999965 8999999999999985
No 45
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.63 E-value=1.1e-15 Score=114.80 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=64.3
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
++||+++.||+++|+|++|+++|++|+.+.++.. .+.++|++.||.|+||+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 4899999999999999999999999999988753 356789999999999999999999999999999984
No 46
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.62 E-value=1.7e-15 Score=112.98 Aligned_cols=70 Identities=23% Similarity=0.213 Sum_probs=65.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
++||++..||+|+|+|++|+++|++|+.+.+++. ++.+++++.||.|+||+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999999873 456789999999999999999999999999999995
No 47
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.62 E-value=1.2e-15 Score=114.31 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=63.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCC-chhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANK-PKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNT 196 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k-~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e 196 (328)
++||+.+.|++|+|+|++|+++|++|+.+.++.... .+.+.+.||.|+||+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 589999999999999999999999999999886432 23478899999999999999999999999999974
No 48
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.61 E-value=2.6e-15 Score=113.04 Aligned_cols=73 Identities=25% Similarity=0.265 Sum_probs=66.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHP 199 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~ 199 (328)
++||+++. ++++|++++|+++|++|+.+.++.. .++++|.+.||.|+||+|+++|..++||.+|++||+++++
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47998876 6899999999999999999999864 5678899999999999999999999999999999999874
No 49
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.61 E-value=3.1e-15 Score=113.32 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=65.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCCCCccEEEeC-CEeeccHHHHHHHHhhhCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFPPKVPLIQHM-DIPITDSLLICDYLNTKHP 199 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~GkVPvL~d~-g~vL~ES~aIl~YL~e~~~ 199 (328)
++||+++.| +++|+|++|+++|++|+.+.++.. +++++|++.||.|+||+|+++ |..++||.+|++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 479999876 599999999999999999999874 357899999999999999966 8999999999999999885
No 50
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.61 E-value=2.2e-15 Score=114.18 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=63.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeC----CEeeccHHHHHHHHhhhC
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHM----DIPITDSLLICDYLNTKH 198 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~----g~vL~ES~aIl~YL~e~~ 198 (328)
+++||+.+.||||+|++++|+++||+|+.+.+++...++ ++.+|.|+||+|+++ |.+++||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~--~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKE--IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHH--HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 479999999999999999999999999999887644333 367999999999954 789999999999999864
No 51
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.59 E-value=5.6e-15 Score=111.81 Aligned_cols=68 Identities=26% Similarity=0.300 Sum_probs=61.6
Q ss_pred cEEEEEeC-------CChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy8000 125 FIRFYSQR-------FCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTK 197 (328)
Q Consensus 125 ~l~LY~~~-------~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~ 197 (328)
+++||+.+ +||+|+||+++|+++|++|+.+.++. .+.||.|+||+|+++|.+++||.+|++||+++
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPKGKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCCCCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 46899888 68999999999999999999988764 26799999999999999999999999999998
Q ss_pred CC
Q psy8000 198 HP 199 (328)
Q Consensus 198 ~~ 199 (328)
|+
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 52
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.54 E-value=1.6e-14 Score=111.43 Aligned_cols=68 Identities=24% Similarity=0.241 Sum_probs=59.5
Q ss_pred eCCChhHHHHHHHHHHCCCceeEEEecCCCCc---hhhhhhCCCCCccEEEeC-CEeeccHHHHHHHHhhhCC
Q psy8000 131 QRFCAFSHRVHLILYANNITHDTVYINTANKP---KWFLDRFFPPKVPLIQHM-DIPITDSLLICDYLNTKHP 199 (328)
Q Consensus 131 ~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~---e~~l~~nP~GkVPvL~d~-g~vL~ES~aIl~YL~e~~~ 199 (328)
..+||||+|+|++|+++||+|+.+.++....+ +++ +.||.|+||+|+++ |.+++||.+|++||+++|+
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 35899999999999999999999998865332 334 78999999999988 8999999999999999874
No 53
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.53 E-value=3.2e-14 Score=109.87 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=61.7
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC----Cchhhhh-h----CCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy8000 127 RFYSQRFCAFSHRVHLILYANNITHDTVYINTAN----KPKWFLD-R----FFPPKVPLIQHMDIPITDSLLICDYLNTK 197 (328)
Q Consensus 127 ~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~----k~e~~l~-~----nP~GkVPvL~d~g~vL~ES~aIl~YL~e~ 197 (328)
+||++..++.|+++|++|+++||+|+.+.+++.. +.+++.+ . +|.|+||+|+++|.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 7899999999999999999999999999998753 1233332 2 29999999999999999999999999986
Q ss_pred C
Q psy8000 198 H 198 (328)
Q Consensus 198 ~ 198 (328)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 54
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.52 E-value=4.3e-14 Score=106.58 Aligned_cols=65 Identities=28% Similarity=0.428 Sum_probs=59.5
Q ss_pred eCCChhHHHHHHHHHHCCCceeEEEecCCC--CchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 131 QRFCAFSHRVHLILYANNITHDTVYINTAN--KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 131 ~~~cP~a~RVrl~L~ekGIpye~v~vd~~~--k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
..+||+|+|++++|+++|++|+.+.+++.. +.++|.+.||.|+||+|+++|.+++||.+|++||+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 458999999999999999999999998753 45789999999999999999999999999999984
No 55
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.51 E-value=7.4e-14 Score=106.94 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=61.8
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhC-----CCCCccEEEeCCEeeccHHHHHHHHhhhCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRF-----FPPKVPLIQHMDIPITDSLLICDYLNTKHP 199 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~n-----P~GkVPvL~d~g~vL~ES~aIl~YL~e~~~ 199 (328)
++||+++.|+.|++++++|+++|++|+.+.++.. +.+.+.+ |.|+||+|+++|.+++||.||++||+++++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 5899999999999999999999999999998752 3333333 589999999999999999999999999884
No 56
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.51 E-value=1.1e-13 Score=105.20 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=59.2
Q ss_pred EEEEeCCChhHHHHHHHHHHCCCceeEEEecCC---CCchhhhhhCCC-CCccEEEeC-CEeeccHHHHHHHHhh
Q psy8000 127 RFYSQRFCAFSHRVHLILYANNITHDTVYINTA---NKPKWFLDRFFP-PKVPLIQHM-DIPITDSLLICDYLNT 196 (328)
Q Consensus 127 ~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~---~k~e~~l~~nP~-GkVPvL~d~-g~vL~ES~aIl~YL~e 196 (328)
+|+.+....++.++|++|+++|++|+.+.+++. ++.++|++.||. |+||+|+++ |..++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 445555555999999999999999999999974 344889999999 999999998 9999999999999985
No 57
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.50 E-value=1.2e-13 Score=100.27 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=63.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCch-hhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPK-WFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e-~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
++||+.+.||+|+|++++|+++|++|+.+.++...... ++.+.+|.+++|+|+++|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 47999999999999999999999999999998654433 47889999999999999999999999999985
No 58
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.45 E-value=3.1e-13 Score=101.15 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=53.5
Q ss_pred CChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy8000 133 FCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTK 197 (328)
Q Consensus 133 ~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~ 197 (328)
.||+|+|++++|+++||+|+.+.++.. ..+|.|+||+|+++|.++.||.+|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~~~~~~~~~~-------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIPYEVVFSSNP-------WRSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCceEEEecCCc-------ccCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 899999999999999999999998742 2789999999999999999999999999874
No 59
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.6e-12 Score=112.39 Aligned_cols=171 Identities=15% Similarity=0.252 Sum_probs=116.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLNTKHPGPRPL 204 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~e~~~~~~~L 204 (328)
++||....||||-|+|++.-.+|||++.+...-++.. --..+-...+||+|+ ++|+.+.||..|++|+++..+++ |
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~-Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~--~ 77 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE-TPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP--L 77 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc-ChhhhhcccccceEEccccccchhhhHHHHHHHHhcCch--h
Confidence 5799999999999999999999999998877533211 001222334899999 89999999999999999998754 3
Q ss_pred CCCChhhhhHHHHHHHHH----HHH-HHHHHHhh-------------hcCc-c----h-------hHHHHHHHHHHHHHH
Q psy8000 205 CHQDAFYQNDDNVMLAEE----FEH-VAWGLRDC-------------LMVD-H----I-------TDELYTNLTTALKWF 254 (328)
Q Consensus 205 ~P~dp~~erA~~~~~~~~----~~~-i~~~~~~~-------------~~~~-~----~-------~e~~~~~l~~~L~~L 254 (328)
.-.. -|-.++.|..- .+. +.|.+.+. +..+ + . -....+++.+.|+.+
T Consensus 78 lt~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l 154 (215)
T COG2999 78 LTGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRAL 154 (215)
T ss_pred hccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHH
Confidence 3222 23334444443 333 34444432 1111 1 1 234456788888889
Q ss_pred HHHHhhCCCcE-----EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhh
Q psy8000 255 ERELTKRQTIY-----WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAV 312 (328)
Q Consensus 255 E~~L~~~g~~F-----lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~ 312 (328)
+..+.... .+ +-||.+||.|+.+..+.. -.| + .++..|+.+|.+...+
T Consensus 155 ~~Li~~~s-~~n~~l~~ddi~vFplLRnlt~v~g---i~w--p----s~v~dy~~~msektqV 207 (215)
T COG2999 155 DKLIVGPS-AVNGELSEDDILVFPLLRNLTLVAG---IQW--P----SRVADYRDNMSEKTQV 207 (215)
T ss_pred HHHhcCcc-hhccccchhhhhhhHHhccceeccc---CCC--c----HHHHHHHHHHHHhhCc
Confidence 88886531 23 889999999988776652 122 2 6799999999986554
No 60
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.33 E-value=6.3e-12 Score=103.81 Aligned_cols=114 Identities=34% Similarity=0.561 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhcccc
Q psy8000 212 QNDDNVMLAEEFEHVAWGLRDCLMVDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVH 284 (328)
Q Consensus 212 erA~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~ 284 (328)
+||+++.|+++++++++.+++.+..++..++..+.+.+.|+.+|+.|++++++| +||+++++++.++..+...
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~ 81 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGAPSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLL 81 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhh
Confidence 799999999999988888888776555677888999999999999998644566 9999999999887765432
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhhhhhhcc
Q psy8000 285 SRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPESYVVSVG 327 (328)
Q Consensus 285 ~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~~~~~~g 327 (328)
.+. ..+.++||+|.+|+++|.++|++++++.+.+.+.+++.
T Consensus 82 ~~~--~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~ 122 (124)
T cd03184 82 LGY--EFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLK 122 (124)
T ss_pred ccc--cCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHh
Confidence 121 12357899999999999999999999999998888764
No 61
>KOG3029|consensus
Probab=99.33 E-value=9.5e-12 Score=114.47 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=118.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCC--
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGPR-- 202 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~~-- 202 (328)
.++||.+..||||-+||..|...||+|++++||+-.+.+. +-+...+||+|..+|+.+.||++|+.-|+.-...++
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eI--k~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~ 167 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEI--KWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQD 167 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhc--cccccccccEEEeccceechhHHHHHHHHHHhccCCCC
Confidence 7999999999999999999999999999999998765553 335667999999878889999999987643221100
Q ss_pred -----CCCC------------------------C-C----hhhhhHHHHHHHHHHHH-----HHHHHHh----------h
Q psy8000 203 -----PLCH------------------------Q-D----AFYQNDDNVMLAEEFEH-----VAWGLRD----------C 233 (328)
Q Consensus 203 -----~L~P------------------------~-d----p~~erA~~~~~~~~~~~-----i~~~~~~----------~ 233 (328)
..+| + | -. .+...+.|-.|+++ +.|.+|+ +
T Consensus 168 l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke-~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 168 LGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKE-TDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred HHHHHHhccccccccccccchhhcchhheeeeeccCCCcccc-chHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 1222 0 1 01 22344567777665 2334433 1
Q ss_pred h-c--------------------------------CcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHH
Q psy8000 234 L-M--------------------------------VDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWP 273 (328)
Q Consensus 234 ~-~--------------------------------~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p 273 (328)
+ + .+....+.++.+.++++.+-..|.. .++| +||+.+|.
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk-nr~flGG~kPnLaDLsvfG 325 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK-NRPFLGGKKPNLADLSVFG 325 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC-CCCccCCCCCchhhhhhhh
Confidence 1 0 0111233566677778777777764 3677 99999999
Q ss_pred HHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhc
Q psy8000 274 WFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLD 308 (328)
Q Consensus 274 ~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~ 308 (328)
.|..+..+.. ++. .-...++..|+.+|++
T Consensus 326 vl~sm~gc~a--fkd----~~q~t~I~eW~~rmea 354 (370)
T KOG3029|consen 326 VLRSMEGCQA--FKD----CLQNTSIGEWYYRMEA 354 (370)
T ss_pred hhhHhhhhhH--HHH----HHhcchHHHHHHHHHH
Confidence 9988876653 221 1234889999999975
No 62
>KOG4244|consensus
Probab=99.19 E-value=4.2e-10 Score=103.16 Aligned_cols=175 Identities=18% Similarity=0.157 Sum_probs=122.0
Q ss_pred CCCCCcEEEEEeC-------CChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHH
Q psy8000 120 HWSLDFIRFYSQR-------FCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICD 192 (328)
Q Consensus 120 ~~~~~~l~LY~~~-------~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~ 192 (328)
.|+++.+-||.++ .||||.++...|+..+||||.+...+ ...++.|++|.++-+|+.+.+|..|+.
T Consensus 40 d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~-------~~rSr~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 40 DYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL-------KRRSRNGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred ccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc-------eeeccCCCcceEEeCCeeccccHHHHH
Confidence 4788999999987 68999999999999999999887553 245788999999999999999999999
Q ss_pred HHhhhCCCCCCCCCCChhhhhHHHHHHHHHHHH-HHHH----------H------------------Hhhh-----cC--
Q psy8000 193 YLNTKHPGPRPLCHQDAFYQNDDNVMLAEEFEH-VAWG----------L------------------RDCL-----MV-- 236 (328)
Q Consensus 193 YL~e~~~~~~~L~P~dp~~erA~~~~~~~~~~~-i~~~----------~------------------~~~~-----~~-- 236 (328)
.|.+.+.-+ ..+|.. +||+.+.+...+++ ++.. + .+++ ..
T Consensus 113 ~L~~hf~~~-~~L~~e---~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv 188 (281)
T KOG4244|consen 113 RLRKHFKIP-DDLSAE---QRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKV 188 (281)
T ss_pred HHHHHcCCC-CCCCHH---HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 999999766 324333 56665554444432 1110 0 0000 00
Q ss_pred ------c---chhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHH
Q psy8000 237 ------D---HITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLL 300 (328)
Q Consensus 237 ------~---~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~ 300 (328)
. -+.++..+-+.+-|+.++..|.+ ++| -+|+.+|..|...-. +....--.+..+++|+|.
T Consensus 189 ~~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg~--KkflfGdkit~~DatvFgqLa~v~Y--P~~~~i~d~le~d~p~l~ 264 (281)
T KOG4244|consen 189 YKRSTGAIGDFESAEIDELLHRDLRAISDYLGD--KKFLFGDKITPADATVFGQLAQVYY--PFRSHISDLLEGDFPNLL 264 (281)
T ss_pred HHHhhccccCcCHHHHHHHHHHHHHHHHHHhCC--CccccCCCCCcceeeehhhhhheec--cCCCcHHHHHhhhchHHH
Confidence 0 02334555667778888888876 566 899999998876543 211110012357899999
Q ss_pred HHHHHHhcc
Q psy8000 301 RWEMKMLDD 309 (328)
Q Consensus 301 aW~~rm~~r 309 (328)
+|.+|+++.
T Consensus 265 eYceRIr~~ 273 (281)
T KOG4244|consen 265 EYCERIRKE 273 (281)
T ss_pred HHHHHHHHH
Confidence 999999863
No 63
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.13 E-value=1.6e-10 Score=98.04 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhcC--cchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhc
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDCLMV--DHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAI 281 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~~~~--~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~ 281 (328)
.|+++++|.+|..+ +.+.+++.... ++..+....++.+.|+.+|+.|++ ++| +|||++++++.++...
T Consensus 4 ~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~--~~yl~Gd~~TlADi~l~~~l~~~~~~ 81 (142)
T cd03190 4 LRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSD--RRYLLGDRLTEADIRLFTTLIRFDAV 81 (142)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHcc--CCeeeCCCccHHHHHHHHHHHHHHHH
Confidence 68899999999986 76777665433 334667888999999999999975 455 9999999998877543
Q ss_pred cccccC-CCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhhhhhhcc
Q psy8000 282 PVHSRY-KYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPESYVVSVG 327 (328)
Q Consensus 282 ~~~~~~-~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~~~~~~g 327 (328)
...... .. ...++||+|.+|+++|.++|++|+++.+.+.+..|++
T Consensus 82 ~~~~~~~~~-~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~ 127 (142)
T cd03190 82 YVQHFKCNL-KRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYG 127 (142)
T ss_pred hhhhccccc-chhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHh
Confidence 211110 01 1135899999999999999999999998888888765
No 64
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.10 E-value=3.6e-10 Score=92.74 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhcC-cchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhcc
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDCLMV-DHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIP 282 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~~~~-~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~ 282 (328)
+|+++++|+++++. +.+.+...+.. ++..+...+++.+.|+.+|+.|++ ++| +|||++++.+.++....
T Consensus 3 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~ADi~l~~~~~~~~~~~ 80 (126)
T cd03185 3 ERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGG--KPFFGGDTIGYVDIALGSFLGWFRAYE 80 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 79999999999875 66666655433 234556788899999999999976 355 99999999998876532
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhhhhhhcc
Q psy8000 283 VHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPESYVVSVG 327 (328)
Q Consensus 283 ~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~~~~~~g 327 (328)
...+... .+.+++|++.+|+++|.++|++++++.+.+.+.+|+.
T Consensus 81 ~~~~~~~-~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 124 (126)
T cd03185 81 EVGGVKL-LDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAK 124 (126)
T ss_pred HHcCccc-cCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHH
Confidence 2111110 1246799999999999999999999999988888764
No 65
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.07 E-value=6.3e-10 Score=85.08 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=64.4
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 122 SLDFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 122 ~~~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
++.+++||+.+.||+|++++.+|..+|++|+.+.++-....+.+...++..+||++..+|..+.++.+|.+||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 45789999999999999999999999999999888754333455566778899999999999999999999985
No 66
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.05 E-value=5.4e-10 Score=84.71 Aligned_cols=66 Identities=17% Similarity=0.076 Sum_probs=52.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTK 197 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~ 197 (328)
+...|+. .+++|.|++++|++.|+||+.+... . .+ ..+|.|+||+|+++|.+++||.+|++||+++
T Consensus 9 ~~~~~~~--~~~~~~kv~~~L~elglpye~~~~~--~-~~---~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 9 EEQILLP--DNASCLAVQTFLKMCNLPFNVRCRA--N-AE---FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred cCeeecC--CCCCHHHHHHHHHHcCCCcEEEecC--C-cc---ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 3445543 3578899999999999999988432 1 11 2578899999999999999999999999864
No 67
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.94 E-value=5e-09 Score=83.76 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhcC-cchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhcc
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDCLMV-DHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIP 282 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~~~~-~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~ 282 (328)
+|++++.|.+++++ +.+.+..+... ++..+...+.+.+.|+.+|+.|++ ++| +|||++++.+.+....+
T Consensus 3 ~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~~~~~ 80 (107)
T cd03186 3 ARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAH--KPYFMSEEFSLVDCALAPLLWRLPALG 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcC--CCcccCCCCcHHHHHHHHHHHHHHHcC
Confidence 89999999999986 66666555443 334566788899999999999976 455 99999999986654322
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHhccHhhHhh
Q psy8000 283 VHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYH 315 (328)
Q Consensus 283 ~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t 315 (328)
+.+ ...+|+|.+|+++|.+||+++++
T Consensus 81 ------~~~-~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 81 ------IEL-PKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred ------CCC-cccchHHHHHHHHHHCCHHHHHh
Confidence 112 24799999999999999999976
No 68
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.90 E-value=6e-09 Score=86.22 Aligned_cols=104 Identities=9% Similarity=0.003 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHhhC-----CCcE-EeeeecHHHHHHHhhccccccCCCCCCCC
Q psy8000 221 EEFEHVAWGLRDCLMVDHITDELYTNLTTALKWFERELTKR-----QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLV 294 (328)
Q Consensus 221 ~~~~~i~~~~~~~~~~~~~~e~~~~~l~~~L~~LE~~L~~~-----g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~ 294 (328)
.+.+++++.+++++.+++..++..+++.+.|+.||+.|++. |+.| +|||+++|++.++..... ....+.+ .+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~-~~~~~~~-~~ 86 (121)
T cd03201 9 SVGSKIFSTFVGFLKSKDSNDGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALG-HYKNWSV-PE 86 (121)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHH-HhcCCCC-cc
Confidence 35567999999999887777778889999999999999742 2334 999999999888764321 1112222 37
Q ss_pred CCHHHHHHHHHHhccHhhHhhcCChhhhhhhc
Q psy8000 295 EFPRLLRWEMKMLDDTAVKYHYQPPESYVVSV 326 (328)
Q Consensus 295 ~yP~L~aW~~rm~~rPs~k~t~~~~~~~~~~~ 326 (328)
++|+|.+|++||.+||+|+++++..+.+....
T Consensus 87 ~~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~ 118 (121)
T cd03201 87 SLTSVKSYMKALFSRESFVKTKAEKEDVIAGW 118 (121)
T ss_pred cchHHHHHHHHHHCCchhhhcCCCHHHHHHHh
Confidence 89999999999999999999999888776543
No 69
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.89 E-value=8.9e-09 Score=84.78 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=75.5
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHh-hhcCcchhHHHHHHHHHHHHHHHHHHhh-CCC-----cE-EeeeecHHHHHHHh
Q psy8000 208 DAFYQNDDNVMLAEEFEHVAWGLRD-CLMVDHITDELYTNLTTALKWFERELTK-RQT-----IY-WFDYMMWPWFERMA 279 (328)
Q Consensus 208 dp~~erA~~~~~~~~~~~i~~~~~~-~~~~~~~~e~~~~~l~~~L~~LE~~L~~-~g~-----~F-lADi~L~p~L~r~~ 279 (328)
|+. +||.+++|+.|...+...++. .+..+. .+++.+.++.||+.|++ .++ .+ +|||+++|++.++.
T Consensus 1 d~~-~ra~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~Le~~L~~~~~~~fl~G~~tlADi~l~~~~~~~~ 74 (120)
T cd03203 1 DPA-KREFADELLAYTDAFTKALYSSLIKGDP-----SAEAAAALDYIENALSKFDDGPFFLGQFSLVDIAYVPFIERFQ 74 (120)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHhcCCCCCcCCCccHHHHHHHHHHHHHH
Confidence 456 899999998884444333322 222221 23456778888888863 112 45 99999999998876
Q ss_pred hccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhhhhhhc
Q psy8000 280 AIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPESYVVSV 326 (328)
Q Consensus 280 ~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~~~~~~ 326 (328)
...... .++.+ .++||+|.+|+++|.++|+++++.++.+.+..++
T Consensus 75 ~~~~~~-~~~~~-~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 75 IFLSEL-FNYDI-TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHh-cCccc-cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 421100 01122 3689999999999999999999999998888764
No 70
>PRK10638 glutaredoxin 3; Provisional
Probab=98.88 E-value=8.6e-09 Score=79.39 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=62.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
.+++|+.+.||||++++.+|.++|++|+.++++... ..+++.+.++.++||++..+|..+....++.++-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 589999999999999999999999999999987543 45678888999999999999999988888877644
No 71
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.88 E-value=1.2e-08 Score=76.31 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=60.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHh
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
+++||+.+.||+|.+++.+|..+|++|+.+.++.......+.......+||++..+|..+.++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999999988754323334455667799999999999999999999984
No 72
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.84 E-value=1.3e-08 Score=85.90 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhcCc--chhHHHHHHHHHHHHHHHHHHhh--------------CCCcE-------EeeeecHHHHHHH
Q psy8000 222 EFEHVAWGLRDCLMVD--HITDELYTNLTTALKWFERELTK--------------RQTIY-------WFDYMMWPWFERM 278 (328)
Q Consensus 222 ~~~~i~~~~~~~~~~~--~~~e~~~~~l~~~L~~LE~~L~~--------------~g~~F-------lADi~L~p~L~r~ 278 (328)
...++++.+..+++++ +..+...+.+.+.|+.||++|++ .+++| +|||.++|.+.++
T Consensus 7 ~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~ 86 (134)
T cd03198 7 AGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIV 86 (134)
T ss_pred hHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3456888888888775 34677788999999999999986 23456 9999999999888
Q ss_pred hhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChhh
Q psy8000 279 AAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPES 321 (328)
Q Consensus 279 ~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~~ 321 (328)
..+... ..++.+ .++||+|.+|++||++||+|+++++..+.
T Consensus 87 ~~~~~~-~~g~~i-~~~~P~L~aw~~ri~aRPsfk~t~~~~~~ 127 (134)
T cd03198 87 KVVAKK-YRNFEI-PADLTGLWRYLKNAYQREEFTNTCPADQE 127 (134)
T ss_pred HHHHHh-hcCCCc-cccCHHHHHHHHHHHCCHHHHHHcCCHHH
Confidence 654321 112222 37899999999999999999999987754
No 73
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.82 E-value=1.7e-08 Score=82.57 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=76.3
Q ss_pred CChhhhhHHHHHHHHHHHH-HHHHHHhhh----cCcchhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHHH
Q psy8000 207 QDAFYQNDDNVMLAEEFEH-VAWGLRDCL----MVDHITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWFE 276 (328)
Q Consensus 207 ~dp~~erA~~~~~~~~~~~-i~~~~~~~~----~~~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L~ 276 (328)
.||. +|++++.|..+.+. +.+.+.... .+.+..+...+++.+.|+.+|++|+++ |..+ +|||++++++.
T Consensus 2 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~ 80 (115)
T cd03196 2 QDPA-ALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVR 80 (115)
T ss_pred CchH-HHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHH
Confidence 3677 89999999998876 445444432 222246677889999999999999862 2233 99999999887
Q ss_pred HHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhc
Q psy8000 277 RMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHY 316 (328)
Q Consensus 277 r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~ 316 (328)
++..... . ..+.++||+|.+|+++|.++|++++++
T Consensus 81 ~~~~~~~--~---~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 81 QFAHVDP--K---WFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHhhh--c---ccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 7653321 0 123478999999999999999999864
No 74
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.81 E-value=1.7e-08 Score=81.00 Aligned_cols=97 Identities=9% Similarity=0.148 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhcC----------cchhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHH
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDCLMV----------DHITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWF 275 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~~~~----------~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L 275 (328)
+|++++.|+.|.++ +.+.+...... +...+...+++.+.++.+|+.|+++ |+.+ +|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 68999999999875 66655443211 1123456778999999999999752 2233 9999999998
Q ss_pred HHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhc
Q psy8000 276 ERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHY 316 (328)
Q Consensus 276 ~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~ 316 (328)
.++.... .+.++||+|.+|+++|.++|++|+++
T Consensus 82 ~~~~~~~--------~~~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPGVG--------LDLSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhhcC--------CChhhChHHHHHHHHHHhCHHhHhhC
Confidence 7765322 22467999999999999999999864
No 75
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.75 E-value=1.9e-08 Score=82.12 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHH-HHHH----HHhhhcC--c--c-h-hHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHH
Q psy8000 212 QNDDNVMLAEEFEH-VAWG----LRDCLMV--D--H-I-TDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWP 273 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~----~~~~~~~--~--~-~-~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p 273 (328)
+|+++++|+.+++. +.+. +...... . + . .+...+.+.+.|+.+|+.|++++++| +|||++++
T Consensus 3 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~ 82 (121)
T cd03191 3 KRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVP 82 (121)
T ss_pred hHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHH
Confidence 79999999999884 4332 2222211 1 1 1 22344668899999999998532345 99999999
Q ss_pred HHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCCh
Q psy8000 274 WFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPP 319 (328)
Q Consensus 274 ~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~ 319 (328)
.+.+..... ++.+.+|+|.+|++++.++|+++++.+..
T Consensus 83 ~~~~~~~~~--------~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 83 QVYNARRFG--------VDLSPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHhC--------CCcccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 987665322 23468999999999999999999988653
No 76
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.71 E-value=6.1e-08 Score=80.26 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCc--chhHHHHHHHHHHHHHHHHHHhhC-CCcE-------EeeeecHHHHHHHhhc
Q psy8000 212 QNDDNVMLAEEFEHVAWGLRDCLMVD--HITDELYTNLTTALKWFERELTKR-QTIY-------WFDYMMWPWFERMAAI 281 (328)
Q Consensus 212 erA~~~~~~~~~~~i~~~~~~~~~~~--~~~e~~~~~l~~~L~~LE~~L~~~-g~~F-------lADi~L~p~L~r~~~~ 281 (328)
+++.++++.+.++++...+..++... +..+...+.+.+.|..+|+.|.++ +++| +||+++++++.++...
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~ 82 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVL 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHh
Confidence 67888888888888777776654332 234456677889999999999864 4566 9999999998887643
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChh
Q psy8000 282 PVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPE 320 (328)
Q Consensus 282 ~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~ 320 (328)
.. . ..++||+|.+|++||.++|++++++....
T Consensus 83 ~~---~----~~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 83 AP---G----CLDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred Ch---H----hhhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 21 1 14689999999999999999999986553
No 77
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.70 E-value=7e-08 Score=79.20 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCcc---hhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhc
Q psy8000 212 QNDDNVMLAEEFEHVAWGLRDCLMVDH---ITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAI 281 (328)
Q Consensus 212 erA~~~~~~~~~~~i~~~~~~~~~~~~---~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~ 281 (328)
++++++++.+.++++...+..++..++ ..+...+.+.+.++.||++|++ ++| +||+.+++++.++...
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~aDi~l~~~~~~~~~~ 79 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGD--RPWFAGDKITYVDFLLYEALDQHRIF 79 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCC--CCCcCCCCccHHHHHHHHHHHHHHHh
Confidence 678999999988888877777654322 2345567788899999999975 345 9999999998887653
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChh
Q psy8000 282 PVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPE 320 (328)
Q Consensus 282 ~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~ 320 (328)
.. ...++||+|.+|++||.++|++++++.+..
T Consensus 80 ~~-------~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~ 111 (121)
T cd03209 80 EP-------DCLDAFPNLKDFLERFEALPKISAYMKSDR 111 (121)
T ss_pred Cc-------cccccChHHHHHHHHHHHCHHHHHHHhccc
Confidence 21 124689999999999999999999986653
No 78
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.68 E-value=1.1e-07 Score=80.28 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc-CcchhHH-----HHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHH
Q psy8000 212 QNDDNVMLAEEFEHVAWGLRDCLM-VDHITDE-----LYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERM 278 (328)
Q Consensus 212 erA~~~~~~~~~~~i~~~~~~~~~-~~~~~e~-----~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~ 278 (328)
+++.++++.+.+.++...++++.. .+++.++ ..+.+.+.|+.||+.|++++++| +||+.+++++.++
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~ 82 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMV 82 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHH
Confidence 678899998888887777766543 3322222 22355789999999998444566 9999999999887
Q ss_pred hhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChh
Q psy8000 279 AAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPE 320 (328)
Q Consensus 279 ~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~ 320 (328)
..... ...++||+|.+|++||.++|++|+++....
T Consensus 83 ~~~~~-------~~l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 83 EELDP-------SLLSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHhch-------hhhccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 64321 124689999999999999999999996543
No 79
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.68 E-value=9.9e-08 Score=76.66 Aligned_cols=98 Identities=15% Similarity=0.224 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhh-----hcC---cchhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHHHH
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDC-----LMV---DHITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWFER 277 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~-----~~~---~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L~r 277 (328)
+|+++++|+.|.+. +.+.+... +.. +...+...+++.+.|+.+|+.|+++ |+.+ +|||++++++.+
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 47888999988865 44332221 111 1234567788999999999999752 2334 999999999888
Q ss_pred HhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhc
Q psy8000 278 MAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHY 316 (328)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~ 316 (328)
...... . ..++||++.+|+++|.++|++++++
T Consensus 81 ~~~~~~------~-~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 81 LEWIGI------D-DLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHhccc------c-chhhchHHHHHHHHHhhCHHHHHhc
Confidence 754431 1 1467999999999999999999875
No 80
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.62 E-value=2.2e-07 Score=71.57 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=53.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEee--ccHHHHHHHHh
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPI--TDSLLICDYLN 195 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL--~ES~aIl~YL~ 195 (328)
+++||+.+.||+|++++-+|.++||+|+.+.++-.......+..++..+||+++.++..+ ++...|-+...
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~Gf~~~~l~~~~~ 74 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWSGFRPDMINRLHP 74 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEecCCHHHHHHHHH
Confidence 689999999999999999999999999999887432222223456778999999877655 45555555443
No 81
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.61 E-value=1.8e-07 Score=70.14 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=56.1
Q ss_pred CcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEeeccHHHHH
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPITDSLLIC 191 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl 191 (328)
++++||+.+.||+|++++.+|+++||+|+.+.++... ..+++.+.++.+++|++..+|..+..-.+..
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~ 69 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLK 69 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHH
Confidence 4789999999999999999999999999999886432 2346788889999999999998886544443
No 82
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.60 E-value=2.2e-07 Score=67.73 Aligned_cols=69 Identities=16% Similarity=0.085 Sum_probs=59.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEeeccHHHHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDY 193 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~Y 193 (328)
.+++|+...||+|++++.+|..+|++|+.+.++... ..+++.+.++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 378999999999999999999999999988776432 345667788999999999999999999888764
No 83
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.58 E-value=1.1e-07 Score=76.68 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHH-HHHHHHh-----hhc-------CcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------Eeeeec
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRD-----CLM-------VDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMM 271 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~-----~~~-------~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L 271 (328)
+|++++.|..|... +.+.+.. .+. +++..+...+.+.+.++.+|++|++ ++| +|||++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~l 79 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYLAGDSFTLADLSH 79 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--CcccCCCCccHHHHHH
Confidence 68888889888764 3332221 111 1123456678899999999999975 455 999999
Q ss_pred HHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhc
Q psy8000 272 WPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHY 316 (328)
Q Consensus 272 ~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~ 316 (328)
++++.+...... . ...+++|+|.+|+++|.++|++++++
T Consensus 80 ~~~~~~~~~~~~--~----~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 80 LPYLQYLMATPF--A----KLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHHccc--h----hhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 999888754221 1 12467999999999999999999864
No 84
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.58 E-value=2.5e-07 Score=67.93 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEee--ccHHHHHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPI--TDSLLICDYL 194 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL--~ES~aIl~YL 194 (328)
+++||+...||+|++++.+|.++|++|+.+.++... ..+++.+.++.+.||+++.+|..+ .++.+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 479999999999999999999999999888776432 124567778889999999888877 6777887776
No 85
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.55 E-value=2.3e-07 Score=75.53 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhh-----cCcchhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHHHHHhh
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDCL-----MVDHITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWFERMAA 280 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~~-----~~~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L~r~~~ 280 (328)
+|+++++|+.|... +.+.+...+ ..+...+...+++.+.|+.+|+.|+++ |..+ +||+++++++.+...
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 68889999988754 544433221 222346677889999999999999752 2223 999999999988764
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhc
Q psy8000 281 IPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHY 316 (328)
Q Consensus 281 ~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~ 316 (328)
.. ..+.+++|+|.+|+++|.++|++++..
T Consensus 82 ~~-------~~~~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 LL-------PLDLSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred hc-------CCChhhCchHHHHHHHHHcccchHHHH
Confidence 11 122457999999999999999999865
No 86
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.55 E-value=3.2e-07 Score=74.08 Aligned_cols=97 Identities=9% Similarity=0.110 Sum_probs=69.8
Q ss_pred ChhhhhHHHHHHHHHHHH-HHHHHHhhhc------C--------cchhHHHHHHHHHHHHHHHHHHhhC----CCcE-Ee
Q psy8000 208 DAFYQNDDNVMLAEEFEH-VAWGLRDCLM------V--------DHITDELYTNLTTALKWFERELTKR----QTIY-WF 267 (328)
Q Consensus 208 dp~~erA~~~~~~~~~~~-i~~~~~~~~~------~--------~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lA 267 (328)
|+. +|+++++|..|++. +.+.+...+. . .+..++...++.+.|+.+|+.|+++ |+.+ +|
T Consensus 1 d~~-~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~a 79 (117)
T cd03182 1 TPL-ERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIA 79 (117)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHH
Confidence 355 89999999999764 5554443321 1 1124567788999999999999752 2333 99
Q ss_pred eeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhh
Q psy8000 268 DYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAV 312 (328)
Q Consensus 268 Di~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~ 312 (328)
||++++.+.+...... .+ ...||+|.+|++++.++|++
T Consensus 80 Di~l~~~~~~~~~~~~------~~-~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 80 DITAFVGLDFAKVVKL------RV-PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHhHHHHhcCC------CC-ccccHHHHHHHHHHHhccCC
Confidence 9999999887754321 11 35799999999999999974
No 87
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.53 E-value=2.7e-07 Score=74.93 Aligned_cols=94 Identities=18% Similarity=0.102 Sum_probs=68.4
Q ss_pred CCChhhhhHHHHHHHHHHHH-HHHHHHhh-----hcC-----------cchhHHHHHHHHHHHHHHHHHHhhCCCcE---
Q psy8000 206 HQDAFYQNDDNVMLAEEFEH-VAWGLRDC-----LMV-----------DHITDELYTNLTTALKWFERELTKRQTIY--- 265 (328)
Q Consensus 206 P~dp~~erA~~~~~~~~~~~-i~~~~~~~-----~~~-----------~~~~e~~~~~l~~~L~~LE~~L~~~g~~F--- 265 (328)
|.++. +|++++.|..+.+. +.+.+... ... +...+....++.+.|+.+|+.|++ ++|
T Consensus 2 ~~~~~-~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 78 (119)
T cd03189 2 PPDTA-EYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAK--KGYFVG 78 (119)
T ss_pred CCCHH-HHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHcc--CCCCCC
Confidence 46777 99999999998875 55554321 111 112334556799999999999976 455
Q ss_pred ----EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccH
Q psy8000 266 ----WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDT 310 (328)
Q Consensus 266 ----lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rP 310 (328)
+|||++++.+.++..... ..++||+|.+|++++.++|
T Consensus 79 d~~t~ADi~l~~~~~~~~~~~~--------~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 79 DKLTAADIMMSFPLEAALARGP--------LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHcCc--------ccccCchHHHHHHHHhcCC
Confidence 999999988877654321 2468999999999999986
No 88
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.52 E-value=6.1e-07 Score=67.75 Aligned_cols=58 Identities=19% Similarity=0.063 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhh
Q psy8000 133 FCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTK 197 (328)
Q Consensus 133 ~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~ 197 (328)
.||+|-++.+.|+..|+||+.+..+ . ...+|.|++|+|+++|+.+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~---n----~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN---N----PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC---C----CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 6899999999999999999887533 1 13578999999999999999999999999864
No 89
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.51 E-value=4.5e-07 Score=66.47 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=51.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEeec
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPIT 185 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL~ 185 (328)
+++|+...||+|++++.+|.++|++|+.+.++... ..+++.+.+|.+++|+|.++|..+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~ 62 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLS 62 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEe
Confidence 68999999999999999999999999998887532 2346777889999999998887663
No 90
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.50 E-value=2.9e-07 Score=73.27 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhh----hc-Cc-----chhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHH
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDC----LM-VD-----HITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWF 275 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~----~~-~~-----~~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L 275 (328)
+|+++++|+.+..+ +.+.+... .. .. ...+...+++.+.|+.+|+.|+++ |+.+ +|||++++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 68889999988864 44443322 11 11 124556788999999999999862 2233 9999999988
Q ss_pred HHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhh
Q psy8000 276 ERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAV 312 (328)
Q Consensus 276 ~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~ 312 (328)
.+..... ...++||+|.+|+++|.++|+|
T Consensus 82 ~~~~~~~--------~~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWFELP--------IERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHcc--------cccccCchHHHHHHHHHhCCCC
Confidence 5443221 1257899999999999999985
No 91
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.45 E-value=7.5e-07 Score=72.58 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhh----c----CcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHH
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDCL----M----VDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWF 275 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~~----~----~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L 275 (328)
+|++++.|..+++. +.+.+...+ . +....+...+++.+.|+.+|+.|+. ++| +|||++++++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~siaDi~l~~~~ 78 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLK--RTYLVGERLTLADIFVAGAL 78 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHcc--CceeccCCccHHHHHHHHHH
Confidence 47889999998875 555443221 1 1123556778899999999999986 345 8999999998
Q ss_pred HHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcCChh
Q psy8000 276 ERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQPPE 320 (328)
Q Consensus 276 ~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~~~~ 320 (328)
.+...... .. . ..+.+|++.+|++++.++|+|++++.+.+
T Consensus 79 ~~~~~~~~--~~--~-~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 79 LLGFTYVF--DK--E-WRAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHHHHc--CH--H-HHHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 87633211 00 0 13578999999999999999999987653
No 92
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.42 E-value=1.2e-06 Score=65.44 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=56.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCC-CccEEEeCCEeeccHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPP-KVPLIQHMDIPITDSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~G-kVPvL~d~g~vL~ES~aIl~YL~ 195 (328)
++||+.+.||+|.+++-+|+.+||+|+.+.++... ..+++.+..... +||++..+|..+....+++++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 78999999999999999999999999999887431 112333444444 89999999999999888887643
No 93
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.39 E-value=1.4e-06 Score=64.98 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCC-chhhhhhC-CCCCccEEE-eCCEeec--cHHHHHHHHh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANK-PKWFLDRF-FPPKVPLIQ-HMDIPIT--DSLLICDYLN 195 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k-~e~~l~~n-P~GkVPvL~-d~g~vL~--ES~aIl~YL~ 195 (328)
++||+...||+|++++..|.+.|++|+.+.++-... .+.+.+.+ +.+.||++. ++|..+. ++..|+.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 689999999999999999999999999887764322 24556666 888999997 6777774 5566776664
No 94
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.33 E-value=2.1e-06 Score=69.91 Aligned_cols=95 Identities=9% Similarity=0.018 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHH-HHHHHHh-h----hcCc---chhHHHHHHHHHHHHHHHHHHhhCCCcE------EeeeecHHHHH
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRD-C----LMVD---HITDELYTNLTTALKWFERELTKRQTIY------WFDYMMWPWFE 276 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~-~----~~~~---~~~e~~~~~l~~~L~~LE~~L~~~g~~F------lADi~L~p~L~ 276 (328)
+|++++.|..++.+ +.+.... . +..+ ...+...+.+.+.++.+|..|++ |++| .||+++++.+.
T Consensus 3 ~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~l~G~fSiAD~~l~~~~~ 81 (114)
T cd03195 3 QRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPP-GAANLFGEWCIADTDLALMLN 81 (114)
T ss_pred hhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhc-CCCcccCCccHHHHHHHHHHH
Confidence 79999999999986 4443111 1 1111 13466777888889999999963 3344 99999999999
Q ss_pred HHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcC
Q psy8000 277 RMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQ 317 (328)
Q Consensus 277 r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~ 317 (328)
|....+ ++.. |++.+|.+||.+||+|++.+.
T Consensus 82 ~~~~~g--------~~l~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 82 RLVLNG--------DPVP--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHcC--------CCCC--HHHHHHHHHHHCCHHHHHHHh
Confidence 887654 2233 999999999999999999774
No 95
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.3e-06 Score=64.85 Aligned_cols=68 Identities=10% Similarity=0.146 Sum_probs=53.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC--Cchhhhh-hCCCCCccEEEeCCEeeccHHHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN--KPKWFLD-RFFPPKVPLIQHMDIPITDSLLICD 192 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~--k~e~~l~-~nP~GkVPvL~d~g~vL~ES~aIl~ 192 (328)
.+++|+.+.||||.|+.-+|..+|++|+.+.++... ...++.+ .++..+||++..+|..+.-...+.+
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~ 72 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDA 72 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHH
Confidence 578999999999999999999999999999988654 3333444 4578899999998877654333333
No 96
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.27 E-value=2.3e-06 Score=70.26 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHH-HHHHHHhh---------hc----CcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------Eeeeec
Q psy8000 213 NDDNVMLAEEFEH-VAWGLRDC---------LM----VDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMM 271 (328)
Q Consensus 213 rA~~~~~~~~~~~-i~~~~~~~---------~~----~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L 271 (328)
|+++++|..|... +.+.+... +. .++..+...+.+.+.++.+|+.|.+ +++| +|||++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLK-DKPFLAGDEISIADLSA 80 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccCCCCCHHHHHH
Confidence 5677888887753 43332211 11 1123456677899999999997533 1344 999999
Q ss_pred HHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhc--cHhhHhhc
Q psy8000 272 WPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLD--DTAVKYHY 316 (328)
Q Consensus 272 ~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~--rPs~k~t~ 316 (328)
++.+.+...... +. .++||+|.+|+++|.+ ||+++++.
T Consensus 81 ~~~~~~~~~~~~------~~-~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 81 VCEIMQPEAAGY------DV-FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHHhcCC------cc-cccCchHHHHHHHHHHhcchhHHHHH
Confidence 998877653321 11 3689999999999999 99999865
No 97
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.25 E-value=4e-06 Score=63.49 Aligned_cols=71 Identities=14% Similarity=0.257 Sum_probs=58.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNT 196 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e 196 (328)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ..+++.+......||++..+|..+....++.++-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 47999999999999999999999999999887432 223455566677999999999999888887776554
No 98
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.25 E-value=2.1e-06 Score=68.06 Aligned_cols=90 Identities=9% Similarity=0.024 Sum_probs=65.0
Q ss_pred HHHHhhhCCCCCCCCCCChhhhhHHHHHHHHHHH-HHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHHhhC----CCcE
Q psy8000 191 CDYLNTKHPGPRPLCHQDAFYQNDDNVMLAEEFE-HVAWGLRDCLMVDHITDELYTNLTTALKWFERELTKR----QTIY 265 (328)
Q Consensus 191 l~YL~e~~~~~~~L~P~dp~~erA~~~~~~~~~~-~i~~~~~~~~~~~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F 265 (328)
+|||++.- .|+|.++. ++++++.|++... ++.. ...+++.+.++.+|++|+++ |+.|
T Consensus 1 ~r~~~~~~----~~~~~~~~-~~~~vd~~~d~~~~~l~~-------------~~~~~~~~~l~~le~~L~~~~fl~Gd~~ 62 (96)
T cd03200 1 ARFLYRLL----GPAPNAPN-AATNIDSWVDTAIFQLAE-------------GSSKEKAAVLRALNSALGRSPWLVGSEF 62 (96)
T ss_pred CchHHHHh----cccCCCch-HHHHHHHHHHHHHHHHhc-------------CCHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 47888882 58999999 9999999998665 3330 12344557788899999762 2233
Q ss_pred -EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhcc
Q psy8000 266 -WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDD 309 (328)
Q Consensus 266 -lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~r 309 (328)
+|||++++.+.+. . ...+.||+|.+|++||.++
T Consensus 63 tiADi~l~~~l~~~---~--------~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 63 TVADIVSWCALLQT---G--------LASAAPANVQRWLKSCENL 96 (96)
T ss_pred CHHHHHHHHHHHHc---c--------cccccChHHHHHHHHHHhC
Confidence 9999999887542 1 1235799999999999863
No 99
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.24 E-value=2.4e-06 Score=63.83 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=44.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCE
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDI 182 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~ 182 (328)
++||+.+.||+|++++-+|+++|++|+.+.++-.......++..+..+||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 479999999999999999999999999998874332223334456669999997553
No 100
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.22 E-value=2e-06 Score=68.03 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhH
Q psy8000 239 ITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVK 313 (328)
Q Consensus 239 ~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k 313 (328)
..+....++.+.++.+|++|+++ |+.+ +|||++++++.+..... . .+++|+|.+|+++|.+||+++
T Consensus 27 ~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~--------~-~~~~p~l~~w~~~~~~~p~~~ 97 (103)
T cd03207 27 ARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG--------L-LPERPAFDAYIARITDRPAFQ 97 (103)
T ss_pred hhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC--------C-CCCChHHHHHHHHHHcCHHHH
Confidence 45667788999999999999862 2233 99999999988875431 1 357999999999999999999
Q ss_pred hhcC
Q psy8000 314 YHYQ 317 (328)
Q Consensus 314 ~t~~ 317 (328)
++..
T Consensus 98 ~~~~ 101 (103)
T cd03207 98 RAAA 101 (103)
T ss_pred HHhc
Confidence 9875
No 101
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.18 E-value=1e-05 Score=62.39 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=60.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHH-----CCCceeEEEecCCCC-chhhhhhCCC--CCccEEEeCCEeeccHHHHHHHHhh
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYA-----NNITHDTVYINTANK-PKWFLDRFFP--PKVPLIQHMDIPITDSLLICDYLNT 196 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~e-----kGIpye~v~vd~~~k-~e~~l~~nP~--GkVPvL~d~g~vL~ES~aIl~YL~e 196 (328)
.+++|+.+.||+|.+++-+|.. .|++|+.+.++-... .+.+...... .+||.+..+|+.+.....|.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 5899999999999999999999 899999988874321 2233333333 5899999999999999999999998
Q ss_pred hCC
Q psy8000 197 KHP 199 (328)
Q Consensus 197 ~~~ 199 (328)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 763
No 102
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.16 E-value=3.8e-06 Score=60.38 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=48.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCC-CCchhhhhhCCCCCccEEEeCCEee
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTA-NKPKWFLDRFFPPKVPLIQHMDIPI 184 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~-~k~e~~l~~nP~GkVPvL~d~g~vL 184 (328)
+++|+.+.||+|.+++-.|..+|++|+.+.++.. ...+++.+.....++|++..||+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 5799999999999999999999999999999854 2334555556677999999988764
No 103
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.16 E-value=1.1e-05 Score=62.54 Aligned_cols=74 Identities=8% Similarity=0.061 Sum_probs=57.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHCC-----CceeEEEecCCC-CchhhhhhCCC--CCccEEEeCCEeeccHHHHHHHHhhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANN-----ITHDTVYINTAN-KPKWFLDRFFP--PKVPLIQHMDIPITDSLLICDYLNTK 197 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekG-----Ipye~v~vd~~~-k~e~~l~~nP~--GkVPvL~d~g~vL~ES~aIl~YL~e~ 197 (328)
+++|+.+.||||.+++-+|..++ ++|+.+.++... ..+.+...... .+||++..+|..+..+.+|.+++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 68999999999999999999985 556666665322 12233344333 58999999999999999999999887
Q ss_pred CC
Q psy8000 198 HP 199 (328)
Q Consensus 198 ~~ 199 (328)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 104
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.14 E-value=4.1e-06 Score=65.04 Aligned_cols=63 Identities=21% Similarity=0.434 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCC-CCCHHHHHHHHHHhccH
Q psy8000 239 ITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPL-VEFPRLLRWEMKMLDDT 310 (328)
Q Consensus 239 ~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~-~~yP~L~aW~~rm~~rP 310 (328)
..+....++.+.|+.+|+.|++ ++| +||+.+++++.+....... .. ++||+|.+|++||.+||
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~--~~~l~G~~~t~ADi~~~~~~~~~~~~~~~-------~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKG--GPYLVGDKLTIADIALFPMLDWLERLGPD-------FLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--SSSSSBSS-CHHHHHHHHHHHHHHHHTTT-------TTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CCeeeccCCchhHHHHHHHHHHHHHhCCC-------cccccCHHHHHHHHHHHcCC
Confidence 3567788899999999999995 556 9999999999998876531 13 78999999999999998
No 105
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.14 E-value=1.8e-05 Score=63.27 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=58.2
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCch----hhhhhCCCCCccEEEeCCEeeccHHHHHHHH
Q psy8000 122 SLDFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPK----WFLDRFFPPKVPLIQHMDIPITDSLLICDYL 194 (328)
Q Consensus 122 ~~~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e----~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL 194 (328)
....+++|+.+.||||+|++-+|...|++|+.++++...... .+.+.+...+||.+..+|..+.....+.+..
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 446799999999999999999999999999999988432211 2344566779999999999887777766643
No 106
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.14 E-value=3.5e-06 Score=66.58 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHh
Q psy8000 239 ITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTA 311 (328)
Q Consensus 239 ~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs 311 (328)
..++...++.+.++.+|+.|++ ++| +||+.+++++.+..... +..++||+|.+|+++|.++|+
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aDi~~~~~~~~~~~~~--------~~~~~~p~l~~~~~~~~~~p~ 99 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAG--RDWLAGDRPTIADVAVYPYVALAPEGG--------VDLEDYPAIRRWLARIEALPG 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc--CCccCCCCCCHHHHHHHHHHHHHhccC--------CChhhCcHHHHHHHHHHhCcC
Confidence 4567788999999999999986 455 99999999886543211 224689999999999999997
Q ss_pred h
Q psy8000 312 V 312 (328)
Q Consensus 312 ~ 312 (328)
+
T Consensus 100 ~ 100 (100)
T cd03206 100 F 100 (100)
T ss_pred C
Confidence 5
No 107
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.12 E-value=2.3e-05 Score=59.29 Aligned_cols=71 Identities=11% Similarity=0.167 Sum_probs=59.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCch----hhhhhCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPK----WFLDRFFPPKVPLIQHMDIPITDSLLICDYLNT 196 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e----~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e 196 (328)
+.+|+...||+|.+++-+|...+++|+.+.++...... .+.+.+...++|++..+|..+.++..|.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 68999999999999999999999999999988654422 234555566999999999999999999998765
No 108
>PHA03050 glutaredoxin; Provisional
Probab=98.05 E-value=3e-05 Score=63.00 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHHCCC---ceeEEEecCCCC----chhhhhhCCCCCccEEEeCCEeeccHHHHHH
Q psy8000 123 LDFIRFYSQRFCAFSHRVHLILYANNI---THDTVYINTANK----PKWFLDRFFPPKVPLIQHMDIPITDSLLICD 192 (328)
Q Consensus 123 ~~~l~LY~~~~cP~a~RVrl~L~ekGI---pye~v~vd~~~k----~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~ 192 (328)
.+++++|+.+.||||.|++-+|..+|+ +|+.++++-... .+++.+.+...+||.+..+|+.+-...++..
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 357999999999999999999999999 788888874222 2355666777799999999998877766665
No 109
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.00 E-value=1.5e-05 Score=63.10 Aligned_cols=88 Identities=14% Similarity=0.232 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcCc-------chhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHH
Q psy8000 212 QNDDNVMLAEEFEHVAWGLRDCLMVD-------HITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFER 277 (328)
Q Consensus 212 erA~~~~~~~~~~~i~~~~~~~~~~~-------~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r 277 (328)
++++++++++.++++...+...+... +..+...+.+.+.++.+|+.|.+.+++| +||+++++++.+
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~ 81 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDY 81 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHH
Confidence 67888999998888877777765432 2244567778899999999997533455 999999999988
Q ss_pred HhhccccccCCCCCC-CCCCHHHHHHHHHH
Q psy8000 278 MAAIPVHSRYKYPNP-LVEFPRLLRWEMKM 306 (328)
Q Consensus 278 ~~~~~~~~~~~~~~~-~~~yP~L~aW~~rm 306 (328)
+..... .. .+.||+|.+|++++
T Consensus 82 ~~~~~~-------~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 82 LLYLDP-------KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHhhCc-------hhhHHhChhHHHHHHhC
Confidence 865432 11 46799999999875
No 110
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=97.90 E-value=1.1e-05 Score=63.64 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=60.1
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHhh----hcCcchhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHH
Q psy8000 208 DAFYQNDDNVMLAEEFEHVAWGLRDC----LMVDHITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFE 276 (328)
Q Consensus 208 dp~~erA~~~~~~~~~~~i~~~~~~~----~~~~~~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~ 276 (328)
++. .++.++.|.++. . .+.+. ...+...+...+++.+.|..+|+.|++++++| +||+++++.+.
T Consensus 2 ~~~-~~a~i~~W~~f~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~ 76 (99)
T PF14497_consen 2 DPY-WRALIDRWLDFS-V---AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLA 76 (99)
T ss_dssp --T-THHHHHHHHH-G-H---CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHH
T ss_pred chH-HHHHHHHHHhcc-c---hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHH
Confidence 455 788888888743 1 11110 01123467778899999999999999976657 99999999886
Q ss_pred HHhhccccccCCCCCCCCCCHHHHHHHHHHhc
Q psy8000 277 RMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLD 308 (328)
Q Consensus 277 r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~ 308 (328)
..... . ++ ++||+|.+|++||++
T Consensus 77 ~~~~~-~-------~~-~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 77 SLRWA-D-------FP-KDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHCC-H-------HT-TTCHHHHHHHHHHHT
T ss_pred HHhhc-c-------cc-cccHHHHHHHHhhcC
Confidence 55422 1 12 589999999999975
No 111
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.89 E-value=1.7e-05 Score=64.80 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCC--------CcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHH
Q psy8000 239 ITDELYTNLTTALKWFERELTKRQ--------TIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWE 303 (328)
Q Consensus 239 ~~e~~~~~l~~~L~~LE~~L~~~g--------~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~ 303 (328)
..+....++.+.|+.+|+.|.++. ++| +|||++++++.+...+.. .... ....+||+|.+|+
T Consensus 26 ~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~--~~~~-~~~~~~P~l~~w~ 102 (111)
T cd03204 26 YLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGL--SRRY-WGNGKRPNLEAYF 102 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCc--cccc-cccccChHHHHHH
Confidence 356788899999999999997531 146 999999999988875431 0000 0135799999999
Q ss_pred HHHhccHhh
Q psy8000 304 MKMLDDTAV 312 (328)
Q Consensus 304 ~rm~~rPs~ 312 (328)
+||.+||+|
T Consensus 103 ~rv~aRpsf 111 (111)
T cd03204 103 ERVLQRESF 111 (111)
T ss_pred HHHHcCCCC
Confidence 999999986
No 112
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.88 E-value=9.9e-05 Score=55.86 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=58.0
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCc--eeEEEecCCCCch----hhhhhCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNIT--HDTVYINTANKPK----WFLDRFFPPKVPLIQHMDIPITDSLLICDYLNT 196 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIp--ye~v~vd~~~k~e----~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e 196 (328)
+.+|+.+.||+|++++-+|...+++ |+.+.++.....+ .+.+.....++|.+..+|..+..+..++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 3689999999999999999999999 8888887653332 234445566899999999999999999887765
No 113
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.88 E-value=7.1e-05 Score=60.97 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhC-CCc-----E-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhh
Q psy8000 240 TDELYTNLTTALKWFERELTKR-QTI-----Y-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAV 312 (328)
Q Consensus 240 ~e~~~~~l~~~L~~LE~~L~~~-g~~-----F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~ 312 (328)
.+...+.+.+.++.+|..|+.. +++ | +||+.+++++.+....+ .+. .|+|.+|++||.++|++
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd~T~ADi~l~~~~~~~~~~~--------~~~--~P~l~~~~~rv~~rPsv 108 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGDFSIADAFFAPVVTRFRTYG--------LPL--SPAAQAYVDALLAHPAM 108 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHHcC--------CCC--CHHHHHHHHHHHCCHHH
Confidence 4455555666666666666421 223 5 89999999988875432 122 29999999999999999
Q ss_pred HhhcC
Q psy8000 313 KYHYQ 317 (328)
Q Consensus 313 k~t~~ 317 (328)
++.+.
T Consensus 109 ~~~~~ 113 (114)
T cd03194 109 QEWIA 113 (114)
T ss_pred HHHHh
Confidence 98763
No 114
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=97.84 E-value=1.8e-05 Score=58.12 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHH
Q psy8000 239 ITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMK 305 (328)
Q Consensus 239 ~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~r 305 (328)
..++..+++.+.|+.+|++|+++ |+.| +||+++++++.++....... . ..+.+|+|.+|++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~----~-~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDF----D-LLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTC----C-HHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCc----C-ccccCHHHHHHHhC
Confidence 35778899999999999999973 2223 99999999999998876421 1 24789999999986
No 115
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.84 E-value=9.3e-05 Score=58.85 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=54.6
Q ss_pred CCcEEEEEe-----CCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEeeccHHHHHHHH
Q psy8000 123 LDFIRFYSQ-----RFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYL 194 (328)
Q Consensus 123 ~~~l~LY~~-----~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL 194 (328)
.+++.+|.. +.||||.+++-+|..+|++|+.+.++-.. ..+.+.+.+...+||.+..+|..+-...++.+..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHH
Confidence 467889975 78999999999999999999988775221 1123345566679999999999887777666643
No 116
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.84 E-value=1.6e-05 Score=62.63 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhh-----hc--C---cchhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHH
Q psy8000 212 QNDDNVMLAEEFEH-VAWGLRDC-----LM--V---DHITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWF 275 (328)
Q Consensus 212 erA~~~~~~~~~~~-i~~~~~~~-----~~--~---~~~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L 275 (328)
+||++++|..+.++ +.+.+..+ +. . ++..+...+++.+.++.+|+.|+++ |..+ +|||++++++
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 68999999988764 44333221 11 1 1124567888999999999999752 2333 9999999998
Q ss_pred HHHhhccccccCCCCCCCCCCHHHHHHHHHHh
Q psy8000 276 ERMAAIPVHSRYKYPNPLVEFPRLLRWEMKML 307 (328)
Q Consensus 276 ~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~ 307 (328)
.++.... .+..++|+|.+|+++++
T Consensus 82 ~~~~~~~--------~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADEGG--------FDLADYPAIRAWLARIE 105 (105)
T ss_pred HhccccC--------CChHhCccHHHHHHhhC
Confidence 8765322 12467999999999874
No 117
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.74 E-value=0.00017 Score=56.31 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCcEEEEEe-----CCChhHHHHHHHHHHCCCceeEEEecCCCC-chhhhhhCCCCCccEEEeCCEeeccHHHHHHHH
Q psy8000 123 LDFIRFYSQ-----RFCAFSHRVHLILYANNITHDTVYINTANK-PKWFLDRFFPPKVPLIQHMDIPITDSLLICDYL 194 (328)
Q Consensus 123 ~~~l~LY~~-----~~cP~a~RVrl~L~ekGIpye~v~vd~~~k-~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL 194 (328)
...+.+|.. +.||||.+++-+|..+|++|+.+.++.... .+...+.+...+||.+..+|..+-....+.+..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 356888865 699999999999999999999998863311 123345566679999999999998887777754
No 118
>KOG3027|consensus
Probab=97.70 E-value=0.00026 Score=63.30 Aligned_cols=162 Identities=14% Similarity=0.105 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhhhCCCCCCCCCCChhhhhHH
Q psy8000 136 FSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNTKHPGPRPLCHQDAFYQNDD 215 (328)
Q Consensus 136 ~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e~~~~~~~L~P~dp~~erA~ 215 (328)
-|-.|...|+-.++||.++.-+ ..+ -++|.|+||.|..|.+.+.|=..|..+.+.+--.-++...++ ++|.
T Consensus 36 scLAVqtfLrMcnLPf~v~~~~----Nae--fmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~---qkad 106 (257)
T KOG3027|consen 36 SCLAVQTFLRMCNLPFNVRQRA----NAE--FMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSED---QKAD 106 (257)
T ss_pred hHHHHHHHHHHcCCCceeeecC----Ccc--ccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhH---HHHH
Confidence 3688999999999999876532 112 358999999999998899999999999988753221334344 8898
Q ss_pred HHHHHHHHHHHHHHHHh-------------------------------hhc-------------CcchhHHHHHHHHHHH
Q psy8000 216 NVMLAEEFEHVAWGLRD-------------------------------CLM-------------VDHITDELYTNLTTAL 251 (328)
Q Consensus 216 ~~~~~~~~~~i~~~~~~-------------------------------~~~-------------~~~~~e~~~~~l~~~L 251 (328)
+|..++.+++++...-. +.+ ...+.++..+++.+..
T Consensus 107 mra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vdkc~ 186 (257)
T KOG3027|consen 107 MRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVDKCC 186 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHH
Confidence 88888877763322110 000 0113566677788888
Q ss_pred HHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhcc
Q psy8000 252 KWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDD 309 (328)
Q Consensus 252 ~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~r 309 (328)
+.|+..|+. ++| .+|..+|..+.-+-...-.... +.-...+|++|-++.+|+.+.
T Consensus 187 ~aLsa~L~~--q~yf~g~~P~elDAlvFGHlytilTt~Lpn~e-la~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 187 RALSAQLGS--QPYFTGDQPTELDALVFGHLYTILTTRLPNME-LANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHhcC--CCccCCCCccHHHHHHHhhhHHhhhhcCCcHH-HHHHHHHhHHHHHHHHHHHHH
Confidence 999999986 666 8999999887665433211000 000146799999999999863
No 119
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=97.52 E-value=7.1e-05 Score=57.67 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhC----CCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHH
Q psy8000 239 ITDELYTNLTTALKWFERELTKR----QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKM 306 (328)
Q Consensus 239 ~~e~~~~~l~~~L~~LE~~L~~~----g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm 306 (328)
..+...+++.+.++.||+.|+++ |+.+ +||+++++++.++........ ..+.+|+|.+|+++|
T Consensus 33 ~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~-----~~~~~p~l~~~~~~~ 100 (100)
T cd00299 33 ALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLG-----LLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhh-----hhccCccHHHHHHhC
Confidence 45677888999999999999863 2334 999999999999876543110 146799999999875
No 120
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.45 E-value=0.00036 Score=54.86 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCC-CcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHH
Q psy8000 240 TDELYTNLTTALKWFERELTKRQ-TIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKM 306 (328)
Q Consensus 240 ~e~~~~~l~~~L~~LE~~L~~~g-~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm 306 (328)
.+....++.+.|+.+|++|++++ +.| +|||.+++.+.+...... +. . ..++||+|.+|++||
T Consensus 35 ~~~~~~~~~~~l~~le~~L~~~~~d~~TlADi~l~~~l~~~~~~~~--~~--~-~~~~~p~l~~w~~rm 98 (98)
T cd03205 35 LERQRGKIERALDALEAELAKLPLDPLDLADIAVACALGYLDFRHP--DL--D-WRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHHHHHHHHHhHcc--Cc--c-hhhhChHHHHHHHhC
Confidence 56778899999999999997632 345 999999999888754321 11 1 146899999999986
No 121
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.26 E-value=0.0005 Score=56.80 Aligned_cols=61 Identities=21% Similarity=0.387 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhc
Q psy8000 240 TDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLD 308 (328)
Q Consensus 240 ~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~ 308 (328)
.+...+++.+.|+.+|+.|++ ++| +||+.+++++.+...... ..+ .+++|+|.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl~Gd~~t~AD~~l~~~l~~~~~~~~-----~~~-~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFLGGAAPNYADYIVFGGFQWARIVSP-----FPL-LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCccCCCCCchhHHHHHHHHHHHHHcCc-----ccc-cccCChHHHHHHHHhc
Confidence 457788899999999999976 456 999999999988865421 111 4689999999999986
No 122
>PRK10824 glutaredoxin-4; Provisional
Probab=97.21 E-value=0.0017 Score=53.31 Aligned_cols=72 Identities=15% Similarity=0.045 Sum_probs=55.4
Q ss_pred CCcEEEEEe-----CCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEeeccHHHHHHHH
Q psy8000 123 LDFIRFYSQ-----RFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYL 194 (328)
Q Consensus 123 ~~~l~LY~~-----~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL 194 (328)
.+++.+|.- +.||||+|+.-+|...|++|+.+.++-.. ..+.+...+...+||-+..+|..+-.+..+....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 356778865 59999999999999999999988876321 1233455566779999999999998777777643
No 123
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.11 E-value=0.0022 Score=54.93 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=53.8
Q ss_pred cEEEEEeC------CChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCC----CCCccEEEeCCEeeccHHHHHHH
Q psy8000 125 FIRFYSQR------FCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFF----PPKVPLIQHMDIPITDSLLICDY 193 (328)
Q Consensus 125 ~l~LY~~~------~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP----~GkVPvL~d~g~vL~ES~aIl~Y 193 (328)
++.||... .||+|++++-+|+.+||+|+.+.|++.. ..+++.+... ..+||.+..+|..|-...++.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 46899988 8999999999999999999998887532 1233344433 36899999999988877777764
No 124
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.07 E-value=0.0029 Score=47.61 Aligned_cols=55 Identities=16% Similarity=0.018 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHCCCc---eeEEEecCCCCchhhhhhCCCCCccEEEe-CCEeeccHHHHHHHH
Q psy8000 133 FCAFSHRVHLILYANNIT---HDTVYINTANKPKWFLDRFFPPKVPLIQH-MDIPITDSLLICDYL 194 (328)
Q Consensus 133 ~cP~a~RVrl~L~ekGIp---ye~v~vd~~~k~e~~l~~nP~GkVPvL~d-~g~vL~ES~aIl~YL 194 (328)
.+|-|-.+.+.|+..+.+ ++++..+ .+ ..+|.|++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~---n~----~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN---NP----WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC---CC----CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 689999999999999999 7777654 11 3689999999998 999999999999998
No 125
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.99 E-value=0.002 Score=64.17 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=49.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhh-hh--------CCCCCccEEEeCCEeeccHHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFL-DR--------FFPPKVPLIQHMDIPITDSLLIC 191 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l-~~--------nP~GkVPvL~d~g~vL~ES~aIl 191 (328)
++++|+.+.||+|+++.-+|..+||+|+.+.++-......+. +. +...+||++..+|..+..-..+.
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHH
Confidence 589999999999999999999999999999887322111221 21 34568999998888774443333
No 126
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=96.98 E-value=0.00032 Score=53.93 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHh
Q psy8000 242 ELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKML 307 (328)
Q Consensus 242 ~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~ 307 (328)
+..+++.+.++.+|+.|++ ++| +|||++++++.++...... ........++||+|.+|++||.
T Consensus 19 ~~~~~~~~~l~~le~~L~~--~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~-~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGD--KKFFFGDKPTSLDATVFGHLASILYAPLP-NSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCC--CCccCCCCCCHHHHHHHHHHHHHHhcCCC-ChHHHHHHHhCcHHHHHHHHhC
Confidence 5677889999999999986 345 9999999999887543210 0000011357999999999974
No 127
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=96.92 E-value=0.0049 Score=50.39 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=63.4
Q ss_pred ChhhhhHHHHHHHHHHHH-HHHHHHh-----hhcCc---chhHHHHHHHHHHHHHHHHHHhhCCCcE------EeeeecH
Q psy8000 208 DAFYQNDDNVMLAEEFEH-VAWGLRD-----CLMVD---HITDELYTNLTTALKWFERELTKRQTIY------WFDYMMW 272 (328)
Q Consensus 208 dp~~erA~~~~~~~~~~~-i~~~~~~-----~~~~~---~~~e~~~~~l~~~L~~LE~~L~~~g~~F------lADi~L~ 272 (328)
|.. +||+.|++..|+.+ +.+.=.. .+... .-.+...+.+.+.+...++.|.. |+++ +||..++
T Consensus 1 D~~-~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFGewsIAD~dlA 78 (117)
T PF14834_consen 1 DRQ-ERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFGEWSIADADLA 78 (117)
T ss_dssp SHH-HHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTSS--HHHHHHH
T ss_pred CHH-HHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCccccchHHHHHHH
Confidence 345 89999998888876 3321111 11111 12456666677777778888875 4443 9999999
Q ss_pred HHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhHhhcC
Q psy8000 273 PWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVKYHYQ 317 (328)
Q Consensus 273 p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k~t~~ 317 (328)
+++.|+...+. .++ +.+..|.++..++|++++.+.
T Consensus 79 ~ml~Rl~~~gd------~vP----~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 79 LMLNRLVTYGD------PVP----ERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHHTTT--------------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHcCC------CCC----HHHHHHHHHHHCCHHHHHHHH
Confidence 99999975442 133 899999999999999998763
No 128
>KOG1752|consensus
Probab=96.59 E-value=0.02 Score=46.18 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=58.4
Q ss_pred CCCcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchh----hhhhCCCCCccEEEeCCEeeccHHHHHHHH
Q psy8000 122 SLDFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKW----FLDRFFPPKVPLIQHMDIPITDSLLICDYL 194 (328)
Q Consensus 122 ~~~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~----~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL 194 (328)
.++.+.+|+-.+||||+++.-+|...|+++.++++|-.....+ +.+..-..+||.+..+|+.+--+..++++-
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 3456899999999999999999999999999999986543322 334455569999999999998777777653
No 129
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.47 E-value=0.01 Score=42.95 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=40.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHHC-----CCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYAN-----NITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPIT 185 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ek-----GIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ 185 (328)
.+++|+.+.||+|.++.-.|++. ++++..+.++ ..++ ..+......+|++..+|+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~~~~-l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--EFPD-LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--cCHh-HHHHcCCcccCEEEECCEEEE
Confidence 47899999999999999998865 4555544443 3333 333344457999998887654
No 130
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=96.44 E-value=0.0071 Score=51.93 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCC-CCCCCHHHHHHHHHHhc
Q psy8000 241 DELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPN-PLVEFPRLLRWEMKMLD 308 (328)
Q Consensus 241 e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~-~~~~yP~L~aW~~rm~~ 308 (328)
++.++.+.++++.+-+.+.++ ++| +|||++++++..++.+.. + +..+||+|.+|++||.+
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~~-~~FlaGd~ptIADisvyg~l~s~e~~~~-------~~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 78 DDVREWLYDALNTWVAALGKD-RQFHGGSKPNLADLAVYGVLRSVEGHPA-------FKDMVEETKIGEWYERMDA 145 (149)
T ss_pred chHHHHHHHHHHHHHHHhcCC-CCccCCCCCCHHHHHHHHHHHHHHHhcc-------ccchhhCcCHHHHHHHHHH
Confidence 556777888887776666542 456 999999999988876532 2 35689999999999986
No 131
>PTZ00062 glutaredoxin; Provisional
Probab=96.33 E-value=0.017 Score=52.17 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=54.0
Q ss_pred CcEEEEEe-----CCChhHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCCCCCccEEEeCCEeeccHHHHHHHH
Q psy8000 124 DFIRFYSQ-----RFCAFSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYL 194 (328)
Q Consensus 124 ~~l~LY~~-----~~cP~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL 194 (328)
.++.|+.- +.||||+++.-+|..+|++|+...++-.. ..+.+.+.+...+||.+..+|+.+-....+.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 46788865 68999999999999999999987776321 1123445566679999999999888777777643
No 132
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.92 E-value=0.0096 Score=48.36 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=30.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEecC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYINT 158 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~ 158 (328)
++||+.+.||+|++++-.|+++|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 579999999999999999999999999988753
No 133
>KOG3028|consensus
Probab=95.86 E-value=0.33 Score=46.26 Aligned_cols=165 Identities=14% Similarity=0.138 Sum_probs=100.5
Q ss_pred CChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEE-eCCEeeccHHHHHHHHhhhCCCCCCCCCCC-hh
Q psy8000 133 FCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ-HMDIPITDSLLICDYLNTKHPGPRPLCHQD-AF 210 (328)
Q Consensus 133 ~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~-d~g~vL~ES~aIl~YL~e~~~~~~~L~P~d-p~ 210 (328)
.||-|-++.+.+...+-|.+++..+- . -.+|.|++|+|+ ++|..+..=..|..+|...-.+- .+-+.. ..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN----~---~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky-~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN----P---WRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKY-NLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC----C---CCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccC-CcCccHHHH
Confidence 58999999999999996665554431 1 246789999999 66799999999999998742111 222222 22
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHh---------------hh----------------cCc-------------chhHHHHH
Q psy8000 211 YQNDDNVMLAEEFEH-VAWGLRD---------------CL----------------MVD-------------HITDELYT 245 (328)
Q Consensus 211 ~erA~~~~~~~~~~~-i~~~~~~---------------~~----------------~~~-------------~~~e~~~~ 245 (328)
+++....|..++.. +.+++.- ++ +.+ +..++...
T Consensus 88 -q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~ 166 (313)
T KOG3028|consen 88 -QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYK 166 (313)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHH
Confidence 55555556655543 2222110 00 000 01234455
Q ss_pred HHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhcc
Q psy8000 246 NLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDD 309 (328)
Q Consensus 246 ~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~r 309 (328)
...+++..|++.|++ +.| .-|..++..+..+-.+.-....+ ..-....++|.++.+++...
T Consensus 167 ~Aska~~~LS~~Lgs--~kffFgd~psslDa~lfs~la~~~~~~Lp~~~L-q~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 167 DASKALNLLSTLLGS--KKFFFGDKPSSLDALLFSYLAILLQVALPNDSL-QVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHHHHHHHHHHHhcC--ceEeeCCCCchHHHHHHHHHHHHHhccCCchhH-HHHHHhcchHHHHHHHHHHH
Confidence 667888899999987 566 77888888877633222111110 00022379999999998753
No 134
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.76 E-value=0.015 Score=48.84 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=30.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
++++|+.+.||+|++++-.|..+||+|+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 479999999999999999999999999998875
No 135
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.61 E-value=0.025 Score=45.18 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=30.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
+++|+.+.||+|++++-.|+++|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 47999999999999999999999999999885
No 136
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.44 E-value=0.032 Score=45.47 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=30.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
++++|+.+.||+|++++-.|.++|++|+.+.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 478999999999999999999999999998874
No 137
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.00 E-value=0.059 Score=45.20 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=31.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecC
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINT 158 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~ 158 (328)
++++|+.+.|+.|++++-.|.++|++|+.+.+.-
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 4789999999999999999999999999988753
No 138
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=94.83 E-value=0.24 Score=37.65 Aligned_cols=55 Identities=13% Similarity=0.255 Sum_probs=41.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCC--CceeEEEecCCCCchhhhhhCCCCCccEEEeCC
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANN--ITHDTVYINTANKPKWFLDRFFPPKVPLIQHMD 181 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekG--Ipye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g 181 (328)
.++||+-+.|+-|..+.-+|+... .++++..+|....++++.+.. -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc--CCCCEEEEcC
Confidence 378999999999999999999654 456677777766666655544 4899999666
No 139
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=94.72 E-value=0.036 Score=46.77 Aligned_cols=67 Identities=19% Similarity=0.433 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhc
Q psy8000 239 ITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLD 308 (328)
Q Consensus 239 ~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~ 308 (328)
..++..++..+.++.||+.|.+ ++| .+|+.+++++..+...... .........+||+|.+|++||.+
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~--~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~-~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGE--SQFFFGDTPTSLDALVFGYLAPLLKAPLP-NNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCC--CCcCCCCCCcHHHHHHHHHHHHHHhccCC-ChHHHHHHHHCcHHHHHHHHHHH
Confidence 3566778888999999999987 455 8999999887665422210 00000114679999999999985
No 140
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.72 E-value=0.043 Score=44.85 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=29.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
+++|+.+.||+|++++-+|.++|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 47999999999999999999999999988875
No 141
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.62 E-value=0.078 Score=44.53 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=31.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
++++|+.+.|+.|++++-.|..+|++|+.+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 478999999999999999999999999999875
No 142
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=94.21 E-value=0.023 Score=47.13 Aligned_cols=66 Identities=9% Similarity=0.194 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCcE-------EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHh
Q psy8000 239 ITDELYTNLTTALKWFERELTKRQTIY-------WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKML 307 (328)
Q Consensus 239 ~~e~~~~~l~~~L~~LE~~L~~~g~~F-------lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~ 307 (328)
..++..+...+.|+.|++.|.+ ++| .+|+.+++++..+...... ...+.....+||+|.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~--~~~l~Gd~pT~~Da~vf~~la~~~~~~~~-~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGT--QPYFFGDQPTELDALVFGHLFTILTTQLP-NDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCcHHHHHHHHHHHHHHhcCCC-ChHHHHHHHhCcHHHHHHHhcC
Confidence 5677888899999999999987 566 8999999998776532110 0001111468999999999983
No 143
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=93.43 E-value=0.17 Score=40.68 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=29.9
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
+++|+.+.|+.|++++-.|.++|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 57999999999999999999999999998875
No 144
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=93.25 E-value=0.57 Score=36.85 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=48.4
Q ss_pred EEEEEeCCCh------hHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhCC----CCCccEEEeCCEeeccHHHHHH
Q psy8000 126 IRFYSQRFCA------FSHRVHLILYANNITHDTVYINTAN-KPKWFLDRFF----PPKVPLIQHMDIPITDSLLICD 192 (328)
Q Consensus 126 l~LY~~~~cP------~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~nP----~GkVPvL~d~g~vL~ES~aIl~ 192 (328)
+++|....+. -|++++.+|..+||+|+.+.|+... ..+|..+..+ ..+||-+..++..+-....+.+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 5677665543 4799999999999999999987532 2234444433 3689999999998877766555
No 145
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=93.18 E-value=0.14 Score=41.79 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=30.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
++||+.+.|+-|++++-.|+++|++|+.+.+-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999998764
No 146
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.99 E-value=0.32 Score=32.39 Aligned_cols=52 Identities=15% Similarity=0.314 Sum_probs=35.5
Q ss_pred EEEEeCCChhHHHHHHHHH-----HCCCceeEEEecCCCCchhhhhhCCCCCccEEE
Q psy8000 127 RFYSQRFCAFSHRVHLILY-----ANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ 178 (328)
Q Consensus 127 ~LY~~~~cP~a~RVrl~L~-----ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~ 178 (328)
.+|....||+|++.+..+. ..++.+..+.++............+.+.+|+++
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLV 58 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEE
Confidence 5677889999999999999 455655555544332222222467778999998
No 147
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.32 Score=36.86 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=45.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecC-----------CCCchhhhhhCCCC--CccEEE-eCCEeec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINT-----------ANKPKWFLDRFFPP--KVPLIQ-HMDIPIT 185 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~-----------~~k~e~~l~~nP~G--kVPvL~-d~g~vL~ 185 (328)
+.+||++..||-|-...--|+-.++.|+.+++.- .+..++|-..-..| -+|+|. ++|.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 3489999999999999999999999999999852 12334454443444 579887 6666654
No 148
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=91.96 E-value=0.93 Score=33.89 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=40.0
Q ss_pred cEEEEEeCCChhHHHH----HHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeec
Q psy8000 125 FIRFYSQRFCAFSHRV----HLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPIT 185 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RV----rl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ 185 (328)
.+.+|+ ++||.|..+ .-++++.|++++.+.++ ..+.. ...-...+|++..+|..+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a-~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEI-LEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHH-HHcCCCcCCEEEECCEEEE
Confidence 367777 899999998 66888889998888887 12222 2223448999998776553
No 149
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=91.86 E-value=1.8 Score=31.96 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=39.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHH----CCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCE
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYA----NNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDI 182 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~e----kGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~ 182 (328)
.+++|..+.||+|.++.-.++. .+..++...+|....++. .+......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK-AMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH-HHHcCCccCCEEEECCE
Confidence 4789999999999998888753 344466667776544443 33344457999997665
No 150
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=90.89 E-value=1.4 Score=32.83 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=36.7
Q ss_pred cEEEEEeCCChhHHHHHH----HHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccH
Q psy8000 125 FIRFYSQRFCAFSHRVHL----ILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDS 187 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl----~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES 187 (328)
.+++ ..+.||+|.++.- ++...|+.++.+.+ . ..+.. ....-..+|+|+.||...+..
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~-~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--E-DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--T-THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--c-CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 3566 4566999986666 45566777766554 2 22222 444456999999888876543
No 151
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=90.63 E-value=0.88 Score=35.34 Aligned_cols=58 Identities=17% Similarity=-0.013 Sum_probs=39.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHHC-----CCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYAN-----NITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPIT 185 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ek-----GIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ 185 (328)
.+.+|..+.||+|..+.-++... ++.++.+.++ ..++. .....-..+|.++.+|..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~-a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDE-VEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHH-HHHcCCccCCEEEECCEEEE
Confidence 68999999999999988877654 4555554443 33333 33333447999997776554
No 152
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=89.62 E-value=0.63 Score=38.30 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=30.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
++++|+.+-|.=|++++-.|++.||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 689999999999999999999999999988764
No 153
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=1.9 Score=34.55 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=49.9
Q ss_pred CcEEEE-----EeCCChhHHHHHHHHHHCC-CceeEEEecCCCCch---hhhhhCCCCCccEEEeCCEeeccHHHHHHHH
Q psy8000 124 DFIRFY-----SQRFCAFSHRVHLILYANN-ITHDTVYINTANKPK---WFLDRFFPPKVPLIQHMDIPITDSLLICDYL 194 (328)
Q Consensus 124 ~~l~LY-----~~~~cP~a~RVrl~L~ekG-Ipye~v~vd~~~k~e---~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL 194 (328)
+++.|| ..|-|.|+.++--+|...| ++|..++| -..++ ...+.+-.-+.|-|+.+|.-+-.|..|.+..
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnV--L~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDV--LQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEee--ccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 445565 2668999999999999999 55555544 22222 2334455679999999999998888777765
Q ss_pred h
Q psy8000 195 N 195 (328)
Q Consensus 195 ~ 195 (328)
.
T Consensus 93 q 93 (105)
T COG0278 93 Q 93 (105)
T ss_pred H
Confidence 4
No 154
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=89.31 E-value=0.57 Score=39.46 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhC---CCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhh
Q psy8000 241 DELYTNLTTALKWFERELTKR---QTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAV 312 (328)
Q Consensus 241 e~~~~~l~~~L~~LE~~L~~~---g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~ 312 (328)
.+..+++...|..+|..+... ++.. +.||.+||.|+-+..+.. .. .+ |++.+|+++|.+.-.+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~~n~~LS~dDi~lFp~LR~Ltivkg---i~--~P----~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNAVNGELSIDDIILFPILRSLTIVKG---IQ--WP----PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTBTTSS--HHHHHHHHHHHHHCTCTT---S---------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCCHHHHHHHHHHhhhhhccC---Cc--CC----HHHHHHHHHHHHHcCC
Confidence 456677888888888888742 2356 899999999999987763 12 23 8999999999986554
No 155
>PRK10853 putative reductase; Provisional
Probab=89.13 E-value=0.57 Score=38.52 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=30.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
++++|+.+.|.=|++++-.|+++|++|+.+.+-
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 479999999999999999999999999988763
No 156
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=88.91 E-value=0.72 Score=38.45 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=30.6
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
.+++|+.+.|.=|++++-.|+++|++|+++.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 579999999999999999999999999998764
No 157
>PRK10026 arsenate reductase; Provisional
Probab=88.38 E-value=0.84 Score=38.85 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=30.8
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
.+++|+.+.|.=|++++-+|+++|++|+++.+-
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 689999999999999999999999999998863
No 158
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=88.14 E-value=0.75 Score=38.53 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh---CCCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhh
Q psy8000 241 DELYTNLTTALKWFERELTK---RQTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAV 312 (328)
Q Consensus 241 e~~~~~l~~~L~~LE~~L~~---~g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~ 312 (328)
.+..+++...|..++..+.. .++.. +.||.+||.|+-+..+.. -. .+ |++.+|+++|.+.-.+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~~n~~ls~DDi~lFp~LR~Lt~vkg---i~--~P----~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEAVNGQLSTDDIILFPILRNLTLVKG---LV--FP----PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccCCcCCHHHHHHHHHHhhhhhhcC---CC--CC----HHHHHHHHHHHHHhCC
Confidence 35667788888888888832 23445 999999999999887753 12 23 8999999999876543
No 159
>PHA02125 thioredoxin-like protein
Probab=87.09 E-value=2.5 Score=31.33 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=37.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEe
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQH 179 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d 179 (328)
++.+|+.++||.|+++.-.|+ +++++...+|....+ ...+...-..+|++.+
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~~~-~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDEGV-ELTAKHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCCCH-HHHHHcCCceeCeEEC
Confidence 467899999999999988876 356777777754433 3344444568999984
No 160
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=86.35 E-value=1.1 Score=36.47 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=29.5
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
+++|+.+.|+=|++++-.|++.|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 47999999999999999999999999988764
No 161
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=85.97 E-value=1.2 Score=36.14 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=29.4
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
+++|+.+.|.=|++++-.|+++|++|+.+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 57999999999999999999999999988763
No 162
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=84.65 E-value=2.7 Score=34.31 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHC---CCceeEEEecCCCCchhhhhh-CC-CCCccEEE-eCCE-------------eeccHHHHHH
Q psy8000 132 RFCAFSHRVHLILYAN---NITHDTVYINTANKPKWFLDR-FF-PPKVPLIQ-HMDI-------------PITDSLLICD 192 (328)
Q Consensus 132 ~~cP~a~RVrl~L~ek---GIpye~v~vd~~~k~e~~l~~-nP-~GkVPvL~-d~g~-------------vL~ES~aIl~ 192 (328)
.+||.|-.+.=+|..- .-..+++.|+....+....+. .. ....|+|+ .+|. .|+++..|++
T Consensus 22 f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~ 101 (112)
T PF11287_consen 22 FYCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILR 101 (112)
T ss_pred EECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHH
Confidence 4799998888777643 223566777765554444332 22 35789999 3332 6899999999
Q ss_pred HHhhhCCCC
Q psy8000 193 YLNTKHPGP 201 (328)
Q Consensus 193 YL~e~~~~~ 201 (328)
||.++|+-+
T Consensus 102 ~La~r~g~p 110 (112)
T PF11287_consen 102 YLAERHGFP 110 (112)
T ss_pred HHHHHcCCC
Confidence 999999643
No 163
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=69.33 E-value=12 Score=38.59 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=39.5
Q ss_pred cEEEEEeCCChhHHHHHHHH----HHC-CCceeEEEecCCCCchhhhhhCCCCCccEEEeCCEeec
Q psy8000 125 FIRFYSQRFCAFSHRVHLIL----YAN-NITHDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPIT 185 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L----~ek-GIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ 185 (328)
.+++|..+.||+|-++.-++ .+. +|..+.+.+. ..++ ..+...-..||.++.||.++.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~--~~~~-~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS--HFPD-LKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc--ccHH-HHHhCCceecCEEEECCEEEE
Confidence 58889999999998766544 444 6777776654 2333 333444568999998876554
No 164
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=67.72 E-value=49 Score=24.77 Aligned_cols=70 Identities=10% Similarity=0.231 Sum_probs=46.5
Q ss_pred cEEEEEeCCChhHHHHHHHH-----HHCCCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee------ccHHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHLIL-----YANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI------TDSLLIC 191 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L-----~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL------~ES~aIl 191 (328)
.+..++.++|+.|++..=.+ ...+ ++....+|.... ..+.+..--..+|.+. .+|... .+...|.
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~ 97 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLI 97 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHH
T ss_pred EEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHH
Confidence 56777888999999988444 3333 667777776544 3344444567899998 666543 2556777
Q ss_pred HHHhh
Q psy8000 192 DYLNT 196 (328)
Q Consensus 192 ~YL~e 196 (328)
++|++
T Consensus 98 ~~i~~ 102 (103)
T PF00085_consen 98 EFIEK 102 (103)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77765
No 165
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=67.49 E-value=35 Score=24.48 Aligned_cols=55 Identities=5% Similarity=0.123 Sum_probs=34.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHH-----CCCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCE
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYA-----NNITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDI 182 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~e-----kGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~ 182 (328)
-+..++.+.|++|+...-.+.. .++.+- .++.... ..+........+|++. .+|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~i~~~~~-~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--KVDVDEN-PELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEE--EEECCCC-hhHHHhcCcccccEEEEEECCE
Confidence 4667788899999998888876 555544 4443332 2233333445789877 5665
No 166
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=67.47 E-value=26 Score=27.98 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=36.5
Q ss_pred cEEEEEeCCCh------hHHHHHHHHHHCCCceeEEEecCCC-CchhhhhhC------CC---CCccEEEeCCEeeccHH
Q psy8000 125 FIRFYSQRFCA------FSHRVHLILYANNITHDTVYINTAN-KPKWFLDRF------FP---PKVPLIQHMDIPITDSL 188 (328)
Q Consensus 125 ~l~LY~~~~cP------~a~RVrl~L~ekGIpye~v~vd~~~-k~e~~l~~n------P~---GkVPvL~d~g~vL~ES~ 188 (328)
.+++|.+..+. ..+|+..+|+.++|+|+.+.+.... ..++..+.. |. ...|-+..++..+-+=.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 36788776554 3589999999999999988876532 122333333 22 24478888888764433
No 167
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=67.43 E-value=7.2 Score=31.19 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.7
Q ss_pred EEeCCChhHHHHHHHHHHCCCceeEEEec
Q psy8000 129 YSQRFCAFSHRVHLILYANNITHDTVYIN 157 (328)
Q Consensus 129 Y~~~~cP~a~RVrl~L~ekGIpye~v~vd 157 (328)
|+.+.|.-|++++-.|+++|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78899999999999999999999987764
No 168
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=64.16 E-value=36 Score=27.81 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=35.2
Q ss_pred cEEEEEeCCChhHHHHHHHHH----HCCCceeEEEecCCC---Cc-----hhhhhhCC----CCCccEEE--eCCEee
Q psy8000 125 FIRFYSQRFCAFSHRVHLILY----ANNITHDTVYINTAN---KP-----KWFLDRFF----PPKVPLIQ--HMDIPI 184 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~----ekGIpye~v~vd~~~---k~-----e~~l~~nP----~GkVPvL~--d~g~vL 184 (328)
.+.-++.++||+|+...=.|. +.++++-.+.++... .. ..+.+... ...+|+++ .+|+.+
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 466678999999999665554 344555555555221 11 12333322 33599998 677644
No 169
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=62.43 E-value=46 Score=24.96 Aligned_cols=59 Identities=7% Similarity=-0.009 Sum_probs=37.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHHC----CCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYAN----NITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI 184 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ek----GIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL 184 (328)
-+..+..++|+.|++..-.+... ...+....+|....++.....+ -..+|++. .+|..+
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~-i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFE-ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcC-CccccEEEEEECCEEE
Confidence 45667788999999887777542 3356666777554444333333 35699887 667644
No 170
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=60.87 E-value=13 Score=38.10 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=44.7
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCCCc---eeEEEecCCCCchhhhhhCCCCCccEEEeCCEeeccH----HHHHHHHhhh
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANNIT---HDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITDS----LLICDYLNTK 197 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekGIp---ye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~ES----~aIl~YL~e~ 197 (328)
.+++|..+.||||-.+.-+++...+. ++...+|-..-+++ .+...-..||.+..+|..+.+. ..+++.+.+.
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~-~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDE-VEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHH-HHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhc
Confidence 58899999999999888777654433 22233443344443 3334445999999777665442 3445555443
No 171
>KOG1147|consensus
Probab=60.64 E-value=5.9 Score=40.78 Aligned_cols=116 Identities=8% Similarity=-0.024 Sum_probs=65.5
Q ss_pred eCCEeeccHHHHHHHHhhhCCCCCCCCCCChhhhhHHHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHHHHHH
Q psy8000 179 HMDIPITDSLLICDYLNTKHPGPRPLCHQDAFYQNDDNVMLAEEFEHVAWGLRDCLMVDHITDELYTNLTTALKWFEREL 258 (328)
Q Consensus 179 d~g~vL~ES~aIl~YL~e~~~~~~~L~P~dp~~erA~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~l~~~L~~LE~~L 258 (328)
.+|..+..+..+..|.+..-.....|++.+ . ++.+++.|.++... .+.++......++...|....-.+
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~-d~~~vd~w~~~s~~---------~~~~~~s~~~~~ld~~l~~~t~lv 111 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-I-DRSQVDHWVSFSST---------FSFDEISSSLSELDKFLVLRTFLV 111 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-c-cHHHHHHHHHHhhh---------cchHHHHHHHHHHHhhhhHHHHhh
Confidence 456777888888888664332221588877 5 89999999887653 111223333344444443333333
Q ss_pred hhCCCcE-EeeeecHHHHHHHhhccccccCCCCCCCCCCHHHHHHHHHHhccHhhH
Q psy8000 259 TKRQTIY-WFDYMMWPWFERMAAIPVHSRYKYPNPLVEFPRLLRWEMKMLDDTAVK 313 (328)
Q Consensus 259 ~~~g~~F-lADi~L~p~L~r~~~~~~~~~~~~~~~~~~yP~L~aW~~rm~~rPs~k 313 (328)
. ... +||+++|..+..-........ ....+-++.+|++-....++.+
T Consensus 112 g---~sls~Ad~aiw~~l~~n~~~~~~lk-----~~k~~~~v~Rw~~~~~~~~a~~ 159 (712)
T KOG1147|consen 112 G---NSLSIADFAIWGALHSNGMRQEQLK-----AKKDYQNVERWYDLPEFQEAHN 159 (712)
T ss_pred c---cchhHHHHHHHHHHhcccchHHHHH-----hhCCchhhhhhcCcHhHHHHHH
Confidence 2 234 999999988765322221111 0235788999988433333333
No 172
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=60.14 E-value=49 Score=25.21 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=36.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHH----CCCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYA----NNITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI 184 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~e----kGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL 184 (328)
.+.+|..++|+.|+...-.+.. .+-.+....+|....++ +....--..+|++. .+|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~-l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE-IAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH-HHHHCCCeeccEEEEEECCeEE
Confidence 5777888999999988877754 11135556666544433 33333335889887 566544
No 173
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=58.75 E-value=15 Score=37.48 Aligned_cols=73 Identities=15% Similarity=-0.029 Sum_probs=45.5
Q ss_pred CcEEEEEeCCChhHHHHHHHHHHCCCc---eeEEEecCCCCchhhhhhCCCCCccEEEeCCEeecc----HHHHHHHHhh
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILYANNIT---HDTVYINTANKPKWFLDRFFPPKVPLIQHMDIPITD----SLLICDYLNT 196 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~ekGIp---ye~v~vd~~~k~e~~l~~nP~GkVPvL~d~g~vL~E----S~aIl~YL~e 196 (328)
-.+++|..+.||||-++.-+++..-+. .+...+|-...++. .+...-..||.+..+|..+.+ -..|++.+.+
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~-~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDE-VEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhH-HHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 368999999999999887777654332 22333343334443 333444599999977766543 3456666655
Q ss_pred h
Q psy8000 197 K 197 (328)
Q Consensus 197 ~ 197 (328)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 174
>KOG3425|consensus
Probab=51.38 E-value=45 Score=27.72 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=43.8
Q ss_pred CCChhHHHHH----HHHHHCCCceeEEEecCCCCchhhhhhCCCC-------CccEEE--e-CCEeeccHHHHHHHHhh
Q psy8000 132 RFCAFSHRVH----LILYANNITHDTVYINTANKPKWFLDRFFPP-------KVPLIQ--H-MDIPITDSLLICDYLNT 196 (328)
Q Consensus 132 ~~cP~a~RVr----l~L~ekGIpye~v~vd~~~k~e~~l~~nP~G-------kVPvL~--d-~g~vL~ES~aIl~YL~e 196 (328)
.+||.|.++. =++++.+-+..++.++..+++.|--..||.+ -||+|. . .+..+.++..-...|.+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 4899998865 4555667777788888878877765566654 478887 3 34456666655555544
No 175
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=50.20 E-value=48 Score=26.46 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=32.2
Q ss_pred cEEEE-EeCCChhHHHHHHHHHHCCCc---eeEEEecCCCCchhhhhhCCCCCccEEE
Q psy8000 125 FIRFY-SQRFCAFSHRVHLILYANNIT---HDTVYINTANKPKWFLDRFFPPKVPLIQ 178 (328)
Q Consensus 125 ~l~LY-~~~~cP~a~RVrl~L~ekGIp---ye~v~vd~~~k~e~~l~~nP~GkVPvL~ 178 (328)
.+.++ +.++||+|+.++-++++..-. .+...+|.... +.....-.-..+|++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~-~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED-KEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC-HHHHHHcCCCcCCEEE
Confidence 35555 568999999888777644321 23444554333 3344444456899998
No 176
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=49.27 E-value=11 Score=31.25 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCCCccEEE--eCCEeeccHHHHHHHHhhhCCCC
Q psy8000 170 FPPKVPLIQ--HMDIPITDSLLICDYLNTKHPGP 201 (328)
Q Consensus 170 P~GkVPvL~--d~g~vL~ES~aIl~YL~e~~~~~ 201 (328)
....-|-|. .+|..++|+.||+|||.+-|.+.
T Consensus 32 ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~ 65 (122)
T PF09635_consen 32 EDESGPLLKDKKSGFELFEPNAIVRYLANDFEGQ 65 (122)
T ss_dssp SS--S--EEE-S--S----HHHHHHHHTT--TTT
T ss_pred CccccceeeecCCceEEecccHHHHHHHhhcCCc
Confidence 334558885 46788999999999999988543
No 177
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=48.79 E-value=78 Score=28.24 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=34.7
Q ss_pred CcEEEEEeCCChhHHHHHHHHHHCCC---ceeEEEecCCCCchhhhhhCCCCCccEEE
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILYANNI---THDTVYINTANKPKWFLDRFFPPKVPLIQ 178 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~ekGI---pye~v~vd~~~k~e~~l~~nP~GkVPvL~ 178 (328)
-.+.+|..++||+|..+..+++..-- ..+...+|....++ ..+...-..+|++.
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~-~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD-LAEKYGVMSVPKIV 191 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH-HHHHhCCccCCEEE
Confidence 36788999999999998887765321 23344566544333 33334445799998
No 178
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=47.37 E-value=63 Score=24.82 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=32.2
Q ss_pred cEEEEEeCCChhHHHHHHHH--------HHCCCceeEEEecCCCCc---hhhhhhCCCCCccEEE
Q psy8000 125 FIRFYSQRFCAFSHRVHLIL--------YANNITHDTVYINTANKP---KWFLDRFFPPKVPLIQ 178 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L--------~ekGIpye~v~vd~~~k~---e~~l~~nP~GkVPvL~ 178 (328)
.+..++.++||+|++..-.+ ...+ .+....+|..... ..+.+...-..+|++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 46678889999999876433 2232 4566666654321 2334444455799887
No 179
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.07 E-value=40 Score=28.85 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=26.0
Q ss_pred cEEEEEeCCChhHHH----HHHHHHHC-CCceeEEEecCC
Q psy8000 125 FIRFYSQRFCAFSHR----VHLILYAN-NITHDTVYINTA 159 (328)
Q Consensus 125 ~l~LY~~~~cP~a~R----Vrl~L~ek-GIpye~v~vd~~ 159 (328)
.+++|....||||.. ++-+++.. ++.++.+++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 378999999999954 44444555 888888888754
No 180
>KOG0911|consensus
Probab=41.10 E-value=60 Score=29.83 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=52.4
Q ss_pred CcEEEE-----EeCCChhHHHHHHHHHHCCCceeEEEecCC-CCchhhhhhCCCCCccEEEeCCEeeccHHHHHHHHhh
Q psy8000 124 DFIRFY-----SQRFCAFSHRVHLILYANNITHDTVYINTA-NKPKWFLDRFFPPKVPLIQHMDIPITDSLLICDYLNT 196 (328)
Q Consensus 124 ~~l~LY-----~~~~cP~a~RVrl~L~ekGIpye~v~vd~~-~k~e~~l~~nP~GkVPvL~d~g~vL~ES~aIl~YL~e 196 (328)
..+.|| ..+.|.|++.+--+|...|++|....|--+ .-++-.++.+-.-+.|-|-.+|.-+-....|.+.+++
T Consensus 139 ~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~~ 217 (227)
T KOG0911|consen 139 KPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHEK 217 (227)
T ss_pred CeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhhc
Confidence 456676 367899999999999999999888776321 1112234456677999999999887777666665543
No 181
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=38.95 E-value=1.8e+02 Score=23.05 Aligned_cols=60 Identities=7% Similarity=0.049 Sum_probs=39.0
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCC--C-ceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEeec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANN--I-THDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPIT 185 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekG--I-pye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL~ 185 (328)
-+..++.++|+.|+...-.+++.. . ......+|....++ ..+...-..+|++. .+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~-l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF-LVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH-HHHHCCCccCCEEEEEECCEEEE
Confidence 466677889999998887775421 1 13566677554433 34445556899998 6787654
No 182
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=38.73 E-value=1.3e+02 Score=23.95 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=14.3
Q ss_pred cEEEEEeCCChhHHHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHL 142 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl 142 (328)
.+..++.++||+|++..-
T Consensus 17 vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEEEeCCCCHHHHHHHH
Confidence 566778889999998753
No 183
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=38.23 E-value=59 Score=28.48 Aligned_cols=23 Identities=9% Similarity=0.337 Sum_probs=20.0
Q ss_pred CcEEEEEeCCChhHHHHHHHHHH
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILYA 146 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~e 146 (328)
-.+.+|..+.||||++..-.+..
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhh
Confidence 46888999999999999988874
No 184
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=37.11 E-value=49 Score=30.67 Aligned_cols=22 Identities=5% Similarity=0.261 Sum_probs=18.4
Q ss_pred CcEEEEEeCCChhHHHHHHHHH
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILY 145 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~ 145 (328)
-.+..|..+.||||+|..-.+.
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHH
Confidence 4578889999999999987765
No 185
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=36.90 E-value=2.1e+02 Score=22.47 Aligned_cols=59 Identities=8% Similarity=0.136 Sum_probs=34.4
Q ss_pred cEEEEEeCCChhHHHHHHHH-----HHCCCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee
Q psy8000 125 FIRFYSQRFCAFSHRVHLIL-----YANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI 184 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L-----~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL 184 (328)
.+..+..++||.|+...-.+ +..+.......+|....+. ......-..+|.+. .+|..+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~-l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR-LARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH-HHHHcCCccCCEEEEEECCEEE
Confidence 46667888999998665333 2333334555565443322 33334456899887 666543
No 186
>PRK10996 thioredoxin 2; Provisional
Probab=35.80 E-value=2.5e+02 Score=23.13 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=36.5
Q ss_pred cEEEEEeCCChhHHHHHHHHHH----CCCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYA----NNITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI 184 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~e----kGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL 184 (328)
.+..++.++|+.|++..-.+.. .+-.+....+|....++ +.+..--..+|.+. .+|..+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~-l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE-LSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH-HHHhcCCCccCEEEEEECCEEE
Confidence 4666778899999986544433 22235566677655444 33333345799888 677644
No 187
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=34.51 E-value=1.2e+02 Score=23.87 Aligned_cols=69 Identities=10% Similarity=0.081 Sum_probs=39.9
Q ss_pred EEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCc-hhh---hhhCC---CCCccEEEeCCE-eeccHHHHHHHHhhh
Q psy8000 128 FYSQRFCAFSHRVHLILYANNITHDTVYINTANKP-KWF---LDRFF---PPKVPLIQHMDI-PITDSLLICDYLNTK 197 (328)
Q Consensus 128 LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~-e~~---l~~nP---~GkVPvL~d~g~-vL~ES~aIl~YL~e~ 197 (328)
|++...||+|.+..-.+....-.-.+..++....+ ... ...++ ...+-+ ..+|. +...|.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 35566899999998888877653333333331111 111 12222 223444 55554 889999999875553
No 188
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=33.77 E-value=67 Score=28.46 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=25.8
Q ss_pred cEEEEEeCCChhH----HHHHHHHHHCCCceeEEEecC
Q psy8000 125 FIRFYSQRFCAFS----HRVHLILYANNITHDTVYINT 158 (328)
Q Consensus 125 ~l~LY~~~~cP~a----~RVrl~L~ekGIpye~v~vd~ 158 (328)
.+.+|....|||| +|..-++...+++++.+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 5789999999998 455556666778877777754
No 189
>PHA03075 glutaredoxin-like protein; Provisional
Probab=32.77 E-value=68 Score=26.48 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=47.6
Q ss_pred CCcEEEEEeCCChhHHHHHHHHHHCCCceeEEEecCCCCchhhhhhCCCCCccEEEe-CCEeeccHHHHHHHHhhhC
Q psy8000 123 LDFIRFYSQRFCAFSHRVHLILYANNITHDTVYINTANKPKWFLDRFFPPKVPLIQH-MDIPITDSLLICDYLNTKH 198 (328)
Q Consensus 123 ~~~l~LY~~~~cP~a~RVrl~L~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~d-~g~vL~ES~aIl~YL~e~~ 198 (328)
++.+.|++-|.|+-|.-+.-+|.+..=+|+...|+.-. |+. -.|+|=+|.. .+..+ =..+.+||...+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fFs--K~g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FFS--KDGQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----eec--cCCceEEEecccceeh--HHHHHHhhcccE
Confidence 35789999999999999999998888889999887421 122 2467777774 33222 134667776554
No 190
>PRK09381 trxA thioredoxin; Provisional
Probab=32.77 E-value=2.3e+02 Score=21.73 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=34.9
Q ss_pred cEEEEEeCCChhHHHHHHHHHH----CCCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYA----NNITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI 184 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~e----kGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL 184 (328)
-+..+..++||.|+...-.++. .+-.+....+|....+.. .+...-..+|++. .+|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT-APKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH-HHhCCCCcCCEEEEEeCCeEE
Confidence 3555667799999987644432 122355666665544443 3333446899887 566644
No 191
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=31.79 E-value=35 Score=28.11 Aligned_cols=57 Identities=11% Similarity=0.244 Sum_probs=29.3
Q ss_pred CCChhHHHHHHHHH----HCCCceeEEEecCCCCchhh-----hhhCC---CCCccEEE--eCCEeeccHH
Q psy8000 132 RFCAFSHRVHLILY----ANNITHDTVYINTANKPKWF-----LDRFF---PPKVPLIQ--HMDIPITDSL 188 (328)
Q Consensus 132 ~~cP~a~RVrl~L~----ekGIpye~v~vd~~~k~e~~-----l~~nP---~GkVPvL~--d~g~vL~ES~ 188 (328)
.+||.|+++.=+++ ...-...++.+....+++|- ++.+| ...||+|. .++..|.|..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 48999999875554 32223555555554444442 23344 23699999 4556666553
No 192
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=31.32 E-value=66 Score=29.42 Aligned_cols=23 Identities=17% Similarity=0.533 Sum_probs=19.2
Q ss_pred CcEEEEEeCCChhHHHHHHHHHH
Q psy8000 124 DFIRFYSQRFCAFSHRVHLILYA 146 (328)
Q Consensus 124 ~~l~LY~~~~cP~a~RVrl~L~e 146 (328)
..+.++..+.||||+|..--+..
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHH
Confidence 46888999999999998877655
No 193
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.76 E-value=1.2e+02 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCChhH----HHHHHHHHHCCCce
Q psy8000 122 SLDFIRFYSQRFCAFS----HRVHLILYANNITH 151 (328)
Q Consensus 122 ~~~~l~LY~~~~cP~a----~RVrl~L~ekGIpy 151 (328)
.+-.+.+|+...|||| +|..-++.+.+-.+
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 3457889999999999 56666777766444
No 194
>PTZ00051 thioredoxin; Provisional
Probab=28.98 E-value=2.4e+02 Score=20.92 Aligned_cols=59 Identities=8% Similarity=0.062 Sum_probs=34.3
Q ss_pred cEEEEEeCCChhHHHHHHHHHHC---CCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYAN---NITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI 184 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ek---GIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL 184 (328)
.+-.++.++|+.|++..-.+... .-.+....+|.... ..+.+...-..+|++. .+|..+
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-SEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-HHHHHHCCCceeeEEEEEeCCeEE
Confidence 45667788999999886655442 12244555554332 2233434445789887 566543
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=28.72 E-value=59 Score=23.71 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=17.7
Q ss_pred EEEEEeCCChhHHHHHHHHHHC
Q psy8000 126 IRFYSQRFCAFSHRVHLILYAN 147 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ek 147 (328)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3578899999999888777653
No 196
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=28.16 E-value=2.5e+02 Score=20.80 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=35.4
Q ss_pred cEEEEEeCCChhHHHHHHHHHHCC----CceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEe
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYANN----ITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIP 183 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ekG----Ipye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~v 183 (328)
.+..+..++|+.|++..-.+.... -.+....+|....++ +.+.-.-..+|++. ++|..
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHHHcCCCCCCEEEEEeCCEE
Confidence 355567789999998866664321 135556666554433 33333445799998 66654
No 197
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=26.56 E-value=3.3e+02 Score=21.71 Aligned_cols=61 Identities=10% Similarity=0.104 Sum_probs=33.1
Q ss_pred cEEEEEeCCChhHHHHHHHHHHC-C---CceeEEEecCCCCchh-hhhhCCCC-CccEEE--e-CCEeec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYAN-N---ITHDTVYINTANKPKW-FLDRFFPP-KVPLIQ--H-MDIPIT 185 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ek-G---Ipye~v~vd~~~k~e~-~l~~nP~G-kVPvL~--d-~g~vL~ 185 (328)
.+.-++..+|++|++..-.+... . ..-+++.++....++. -...+..| .+|++. + +|..+.
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 45556778999999886655442 1 2223444444332211 12334554 599988 3 665443
No 198
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.64 E-value=56 Score=32.09 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=28.2
Q ss_pred cceee-eeceEE-EeeeeechhHhhhhccCcccceeeccCccc
Q psy8000 29 LGLCL-CVNHVV-LSKVTFNMTFFEIMKNQTEIPVIYKDSYET 69 (328)
Q Consensus 29 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (328)
+.||- |+.-.- -..-+.|+.-..+||+.+.+||+|.-+..+
T Consensus 256 i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~ 298 (360)
T PRK12595 256 IILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHST 298 (360)
T ss_pred EEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCC
Confidence 55675 664321 113456999999999999999999555544
No 199
>PTZ00102 disulphide isomerase; Provisional
Probab=24.23 E-value=4.6e+02 Score=25.95 Aligned_cols=74 Identities=9% Similarity=0.138 Sum_probs=44.6
Q ss_pred cEEEEEeCCChhHHHHHHHH-------HHCCCceeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee-----ccHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHLIL-------YANNITHDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI-----TDSLLI 190 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L-------~ekGIpye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL-----~ES~aI 190 (328)
.+..++.++|+.|++..=.+ ...+-++....+|.....+. .+...-..+|.+. .+|..+ .....|
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l-~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMEL-AQEFGVRGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHH-HHhcCCCcccEEEEEECCceEEecCCCCHHHH
Confidence 56778889999998765222 22234566666765443332 2222234689887 444432 356788
Q ss_pred HHHHhhhCC
Q psy8000 191 CDYLNTKHP 199 (328)
Q Consensus 191 l~YL~e~~~ 199 (328)
.+|+.+..+
T Consensus 131 ~~~l~~~~~ 139 (477)
T PTZ00102 131 VSWIKKLTG 139 (477)
T ss_pred HHHHHHhhC
Confidence 999987654
No 200
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=24.22 E-value=4e+02 Score=22.65 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=36.2
Q ss_pred cEEEEEeCCChhHHHHHHHHHH-----CCCceeEEEecCCCCchhhhhhCCC-----CCccEEE--eCCEeec
Q psy8000 125 FIRFYSQRFCAFSHRVHLILYA-----NNITHDTVYINTANKPKWFLDRFFP-----PKVPLIQ--HMDIPIT 185 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~e-----kGIpye~v~vd~~~k~e~~l~~nP~-----GkVPvL~--d~g~vL~ 185 (328)
.+..++.++||.|+...-.++. .+-.+....||....++.-.+.+-. +++|++. .+|+.+.
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 4666778899999987755533 2223566677765444322222221 2489988 6776554
No 201
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=23.83 E-value=90 Score=24.07 Aligned_cols=21 Identities=10% Similarity=0.623 Sum_probs=14.9
Q ss_pred cEEEEEeCCChhHHHHHHHHH
Q psy8000 125 FIRFYSQRFCAFSHRVHLILY 145 (328)
Q Consensus 125 ~l~LY~~~~cP~a~RVrl~L~ 145 (328)
.+.++..+.||||++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 566678999999998866665
No 202
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=23.37 E-value=4.1e+02 Score=21.58 Aligned_cols=58 Identities=7% Similarity=0.096 Sum_probs=35.1
Q ss_pred EEEEEeCCChhHHHHHHHHHHCCC--c--eeEEEecCCCCchhhhhhCCCCCccEEE--eCCEee
Q psy8000 126 IRFYSQRFCAFSHRVHLILYANNI--T--HDTVYINTANKPKWFLDRFFPPKVPLIQ--HMDIPI 184 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl~L~ekGI--p--ye~v~vd~~~k~e~~l~~nP~GkVPvL~--d~g~vL 184 (328)
+.-++..+||.|+...=++++.-- + .....||....++ ..+..--..+|++. .+|+.+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHHHcCCCCCCEEEEEECCEEE
Confidence 444778899999987666643321 1 3455666555443 23333334699998 677655
No 203
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=22.98 E-value=1.1e+02 Score=26.00 Aligned_cols=32 Identities=19% Similarity=0.059 Sum_probs=21.4
Q ss_pred EEEEEeCCChhHHHH----HHHHHHCCCceeEEEec
Q psy8000 126 IRFYSQRFCAFSHRV----HLILYANNITHDTVYIN 157 (328)
Q Consensus 126 l~LY~~~~cP~a~RV----rl~L~ekGIpye~v~vd 157 (328)
+.+|....||||.-. +-+....+++++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 367899999999654 33444556776666653
No 204
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=22.52 E-value=1.9e+02 Score=21.90 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=11.7
Q ss_pred hhHHHhhhhheeeeee
Q psy8000 5 GLRAFYHQKLQLVLVM 20 (328)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (328)
..++||.+.|.+-+.+
T Consensus 13 ~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 13 AAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHhcCceEEE
Confidence 3578999988776654
No 205
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.02 E-value=1e+02 Score=26.55 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=21.6
Q ss_pred EEEEEeCCChhHH----HHHHHHHHC----CCceeEEEecC
Q psy8000 126 IRFYSQRFCAFSH----RVHLILYAN----NITHDTVYINT 158 (328)
Q Consensus 126 l~LY~~~~cP~a~----RVrl~L~ek----GIpye~v~vd~ 158 (328)
+.+|....||||. +.+-++... +++++.+++.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 3678899999997 444444454 56666666543
No 206
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=20.89 E-value=3.8e+02 Score=21.94 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=36.5
Q ss_pred EEEEEeCCChhHHHHHH-HH------HHCCCceeEEEecCCCCchh---hhh----hCCCCCccEEE---eCCEeeccH
Q psy8000 126 IRFYSQRFCAFSHRVHL-IL------YANNITHDTVYINTANKPKW---FLD----RFFPPKVPLIQ---HMDIPITDS 187 (328)
Q Consensus 126 l~LY~~~~cP~a~RVrl-~L------~ekGIpye~v~vd~~~k~e~---~l~----~nP~GkVPvL~---d~g~vL~ES 187 (328)
+-.++..+|++|++..- ++ ....=.|..+.+|....++. +.+ ..-.+-+|+++ .+|+.++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 33467789999997742 22 22222577777776554432 111 12345689888 467777765
Done!