BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8001
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VSH4|CPSF6_DROME Cleavage and polyadenylation specificity factor subunit CG7185
OS=Drosophila melanogaster GN=CG7185 PE=1 SV=2
Length = 652
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 98/163 (60%), Gaps = 15/163 (9%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPARYRHHRYSH 60
+DLYDD +G GPT++ S G T D + +P ++G Y
Sbjct: 30 VDLYDD--IG-GPTESAASGGGGGGTPSAD-GAAGPGSGEPGERNSGGPNGVY------- 78
Query: 61 HHSQATSSSHCN----LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGF 116
H S + + N LYVGNLTWWTT+ D+++++R IGV D +VKFFEN +NGQSKGF
Sbjct: 79 HQSSGSLTPTMNRRYQLYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGF 138
Query: 117 CTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEA 159
++LGSE S+ V+++LP E+HG+ P+V YP++ L QFE+
Sbjct: 139 SVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFES 181
>sp|Q6NWC6|CPSF6_DANRE Cleavage and polyadenylation specificity factor subunit 6 OS=Danio
rerio GN=cpsf6 PE=2 SV=1
Length = 545
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 87/147 (59%), Gaps = 15/147 (10%)
Query: 28 HDDIDLYDDVTLQPFPEHTGRSPAR--YRHHRYSHHHSQATSSSHCN-----------LY 74
HD IDLYDDV + P + G +P Y + ++ + + N LY
Sbjct: 27 HDQIDLYDDV-ISPS-ANNGDAPEDRDYLDSLPAPGGNEGSKGAPANVVYTYNGKRIALY 84
Query: 75 VGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL 134
+GNLTWWTT+ D++DAIRSIG+ D +++KFFEN +NGQSKGF V +GS+ S +M+ L
Sbjct: 85 IGNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLMDLL 144
Query: 135 PTLELHGRKPMVAYPTRNVLYQFEAQN 161
ELHG+ P+V + L QFE Q+
Sbjct: 145 SKRELHGQNPIVTPCNKQSLSQFEMQS 171
>sp|Q16630|CPSF6_HUMAN Cleavage and polyadenylation specificity factor subunit 6 OS=Homo
sapiens GN=CPSF6 PE=1 SV=2
Length = 551
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 84/153 (54%), Gaps = 27/153 (17%)
Query: 28 HDDIDLYDDV------------------TLQP-FPEHTGRSPARYRHHRYSHHHSQATSS 68
HD IDLYDDV TL P + G+ A + Y+
Sbjct: 27 HDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYT--------G 78
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S
Sbjct: 79 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 138
Query: 129 LVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN 161
+M+ LP ELHG+ P+V + L QFE Q+
Sbjct: 139 KLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQS 171
>sp|Q0P5D2|CPSF6_BOVIN Cleavage and polyadenylation specificity factor subunit 6 OS=Bos
taurus GN=CPSF6 PE=2 SV=1
Length = 551
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 84/153 (54%), Gaps = 27/153 (17%)
Query: 28 HDDIDLYDDV------------------TLQP-FPEHTGRSPARYRHHRYSHHHSQATSS 68
HD IDLYDDV TL P + G+ A + Y+
Sbjct: 27 HDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYT--------G 78
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S
Sbjct: 79 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 138
Query: 129 LVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN 161
+M+ LP ELHG+ P+V + L QFE Q+
Sbjct: 139 KLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQS 171
>sp|Q6NVF9|CPSF6_MOUSE Cleavage and polyadenylation specificity factor subunit 6 OS=Mus
musculus GN=Cpsf6 PE=1 SV=1
Length = 551
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 84/153 (54%), Gaps = 27/153 (17%)
Query: 28 HDDIDLYDDV------------------TLQP-FPEHTGRSPARYRHHRYSHHHSQATSS 68
HD IDLYDDV TL P + G+ A + Y+
Sbjct: 27 HDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYT--------G 78
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S
Sbjct: 79 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 138
Query: 129 LVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN 161
+M+ LP ELHG+ P+V + L QFE Q+
Sbjct: 139 KLMDLLPKRELHGQSPVVTPCNKQFLSQFEMQS 171
>sp|Q5ZL34|CPSF6_CHICK Cleavage and polyadenylation specificity factor subunit 6 OS=Gallus
gallus GN=CPSF6 PE=2 SV=1
Length = 551
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 81/149 (54%), Gaps = 19/149 (12%)
Query: 28 HDDIDLYDDVT---------------LQPFPEHTGRSPARYRHHRYSHHHSQATSSSHCN 72
HD IDLYDDV + P G + + ++
Sbjct: 27 HDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSVGDDVGKGAAPNVVYTYT----GKRIA 82
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S +M+
Sbjct: 83 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 142
Query: 133 RLPTLELHGRKPMVAYPTRNVLYQFEAQN 161
LP ELHG+ P+V + L QFE Q+
Sbjct: 143 LLPKRELHGQNPVVTPCNKQFLSQFEMQS 171
>sp|Q6DDW4|CPSF6_XENLA Cleavage and polyadenylation specificity factor subunit 6
OS=Xenopus laevis GN=cpsf6 PE=2 SV=1
Length = 548
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 85/147 (57%), Gaps = 15/147 (10%)
Query: 28 HDDIDLYDDVTLQPFPEHTGRSPA--RYRHHRYSHHHSQATSSSHCN-----------LY 74
HD I+LY+DV L P + G +P Y + + S N LY
Sbjct: 27 HDQIELYEDV-LSPS-ANNGDAPEDRDYMDNLAASVGDDVVKGSVPNIVYTYTGKRIALY 84
Query: 75 VGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL 134
+GNLTWWTT+ D++DA+ S+GV D +++KFFEN +NGQSKGF + + SE S +M+ L
Sbjct: 85 IGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSKKLMDLL 144
Query: 135 PTLELHGRKPMVAYPTRNVLYQFEAQN 161
P E+HG+KP+V + L QFE Q+
Sbjct: 145 PKREMHGQKPIVTPCNKQFLSQFEMQS 171
>sp|Q5NVH8|CPSF6_PONAB Cleavage and polyadenylation specificity factor subunit 6 OS=Pongo
abelii GN=CPSF6 PE=2 SV=1
Length = 552
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 83/153 (54%), Gaps = 27/153 (17%)
Query: 28 HDDIDLYDDV------------------TLQP-FPEHTGRSPARYRHHRYSHHHSQATSS 68
HD IDLYDDV TL P + G+ A + Y+
Sbjct: 27 HDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYT--------G 78
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
LY+GNLT WTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S
Sbjct: 79 KRIALYIGNLTRWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 138
Query: 129 LVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN 161
+M+ LP ELHG+ P+V + L QFE Q+
Sbjct: 139 KLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQS 171
>sp|Q8N684|CPSF7_HUMAN Cleavage and polyadenylation specificity factor subunit 7 OS=Homo
sapiens GN=CPSF7 PE=1 SV=1
Length = 471
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 92/186 (49%), Gaps = 28/186 (15%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGRS----PARY 53
+D+Y D P NT D IDLYDDV T QP + + + P R
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 54 RHHRYSHHHSQATSSSHCNL-------YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
++ + A ++ L YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSR 166
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ +R
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQ----AR 173
Query: 167 SRRSYR 172
R R
Sbjct: 174 KRECVR 179
>sp|Q5XI29|CPSF7_RAT Cleavage and polyadenylation specificity factor subunit 7 OS=Rattus
norvegicus GN=Cpsf7 PE=2 SV=1
Length = 462
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 22/175 (12%)
Query: 1 MDLYDDAILGMG-PTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPARYRHHRYS 59
+DLYDD + P+D +S STE V +P P+ ++PA + YS
Sbjct: 28 IDLYDDVLTAASQPSDDRSS-----STEPPP-----PVRQEPAPKPNNKTPAIL--YTYS 75
Query: 60 HHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTV 119
S+ +YVG+ +WWTT+ + IRSIGV D +++KF EN +NGQSKG+ V
Sbjct: 76 GLRSR-----RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEV 130
Query: 120 TLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----PLRSRSRRS 170
+ SE S+ ++E LP L+G K V TR L QFEAQ P R+ SR S
Sbjct: 131 VVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIPPRAHSRDS 185
>sp|Q8BTV2|CPSF7_MOUSE Cleavage and polyadenylation specificity factor subunit 7 OS=Mus
musculus GN=Cpsf7 PE=1 SV=2
Length = 471
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 91/173 (52%), Gaps = 22/173 (12%)
Query: 1 MDLYDDAILGMG-PTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPARYRHHRYS 59
+DLYDD + P+D +S STE V +P P+ ++PA + YS
Sbjct: 28 IDLYDDVLTAASQPSDDRSS-----STEPPP-----PVRQEPAPKPNNKTPAIL--YTYS 75
Query: 60 HHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTV 119
S+ +YVG+ +WWTT+ + IRSIGV D +++KF EN +NGQSKG+ V
Sbjct: 76 GLRSR-----RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEV 130
Query: 120 TLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRSRRSYR 172
+ SE S+ ++E LP L+G K V TR L QFEAQ +R R R
Sbjct: 131 VVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQ----ARKRECVR 179
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
LYV NL+W T + DA P F+ K + S+G+S+GF +T S E+M+ +
Sbjct: 218 KLYVANLSWALTSQGLRDAFAD--QPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSAL 275
Query: 132 ERLPTLELHGR 142
+ + +EL GR
Sbjct: 276 DTMNEVELEGR 286
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LYVGNL + T + +S+ G +++ + + +S+GF VT+GS E +
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVY--DRVTDRSRGFAFVTMGSVEEAKEAIR 173
Query: 133 RLPTLELHGRKPMVAYP 149
++ GR V +P
Sbjct: 174 LFDGSQVGGRTVKVNFP 190
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T + + +A G D ID K + G+S+GF VT S+E+M +E
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYG--DVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 134 LPTLELHGRKPMV 146
+ +L GR V
Sbjct: 67 MNGQDLDGRNITV 79
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
S ++VG +++ T E + +A G + +D K + G+S+GF VT S E S
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYG--EVVDAKIIVDRETGRSRGFAFVTFTSTEEAS 89
Query: 129 LVMERLPTLELHGRKPMVAYPT 150
M+ L +LHGR+ V Y T
Sbjct: 90 NAMQ-LDGQDLHGRRIRVNYAT 110
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T+ + +A S G + +D K + G+S+GF VT SE SM +E
Sbjct: 11 FVGGLAWATSNESLENAFASYG--EILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 134 LPTLELHGRKPMV 146
+ EL GR V
Sbjct: 69 MNGKELDGRNITV 81
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T + D+ G D ID K + +G+S+GF VT E++M +E
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFG--DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 134 LPTLELHGRKPMV 146
+ EL GR V
Sbjct: 67 MNGKELDGRVITV 79
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L++G L+W T +A + DA G D +D K + G+S+GF V E + + +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 133 RLPTLELHGR 142
+ EL+GR
Sbjct: 95 EMDGKELNGR 104
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T + A + G ID K + G+S+GF VT SE+SM +E
Sbjct: 11 FVGGLAWATNNETLEQAFANFG--QVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 134 LPTLELHGRKPMV 146
+ EL GR V
Sbjct: 69 MNGKELDGRNITV 81
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T + + A G D D K + G+S+GF VT E+SM +E
Sbjct: 9 FVGGLAWATNDESLEQAFSQFG--DITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 134 LPTLELHGRKPMV 146
+ EL GR V
Sbjct: 67 MNGQELDGRNITV 79
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana
GN=RBG1 PE=2 SV=2
Length = 149
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
+VG L W T E + G + D K + G+SKGF VT E+SM ++
Sbjct: 10 CFVGGLAWATDEQSIERCFNEFG--EVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAID 67
Query: 133 RLPTLELHGR 142
R+ EL GR
Sbjct: 68 RMNGQELDGR 77
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T E + A G + +D K + G+S+GF VT E+SM +E
Sbjct: 11 FVGGLAWATDERSLETAFSQFG--ELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 134 LPTLELHGRKPMV 146
+ +L GR V
Sbjct: 69 MNGQDLDGRSITV 81
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T +A++ G + ID K + G+S+GF VT E+SM ++
Sbjct: 9 FVGGLAWATGDAELERTFSQFG--EVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 134 LPTLELHGRKPMV 146
+ EL GR V
Sbjct: 67 MNGKELDGRTITV 79
>sp|P40565|IST3_YEAST U2 snRNP component IST3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=IST3 PE=1 SV=1
Length = 148
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
+Y+GNL TE D+ GVP +DV + + G+S+GF + + S L ++
Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVP--VDVILSRDENTGESQGFAYLKYEDQRSTILAVD 90
Query: 133 RLPTLELHGRKPMVAY----PTRNVLYQFEA 159
L ++ GR + + P R++ +EA
Sbjct: 91 NLNGFKIGGRALKIDHTFYRPKRSLQKYYEA 121
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus GN=Tra2a PE=1
SV=1
Length = 281
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 56 HRYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKG 115
+R H S+A + L V L+ +TTE D+ + G ++V + + G+S+G
Sbjct: 102 NRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVY--DQRTGRSRG 159
Query: 116 FCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148
F V + MER +EL GR+ V Y
Sbjct: 160 FAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens GN=TRA2A PE=1
SV=1
Length = 282
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 56 HRYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKG 115
+R H S+A + L V L+ +TTE D+ + G ++V + + G+S+G
Sbjct: 104 NRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVY--DQRTGRSRG 161
Query: 116 FCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148
F V + MER +EL GR+ V Y
Sbjct: 162 FAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
+YVGNL W + + G +D K + +G+S+GF VT S E ++ +E
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQG--KVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247
Query: 133 RLPTLELHGR----KPMVAYPTR 151
L ++L+GR P A P R
Sbjct: 248 SLDGVDLNGRAIRVSPAEARPPR 270
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESM 127
S ++VGNL + A +++ G + ++V + + G+S+GF VT+ S+E +
Sbjct: 84 SPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIY--DKLTGRSRGFGFVTMSSKEEV 141
Query: 128 SLVMERLPTLELHGR 142
++ EL GR
Sbjct: 142 EAACQQFNGYELDGR 156
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSE 124
A+ +VG L W T + + A G D ID K + G+S+GF VT E
Sbjct: 2 ASGDVEYRCFVGGLAWATDDRALETAFAQYG--DVIDSKIINDRETGRSRGFGFVTFKDE 59
Query: 125 ESMSLVMERLPTLELHGRKPMV 146
++M +E + +L GR V
Sbjct: 60 KAMKDAIEGMNGQDLDGRSITV 81
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 41 PFPEHTGRSPARYRHHRYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFI 100
P PE S R + S +YVGNL W + + G +
Sbjct: 164 PPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQG--KVV 221
Query: 101 DVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR----KPMVAYPTR 151
D K + +G+S+GF VT S E ++ +E L ++L+GR P A P R
Sbjct: 222 DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 276
Score = 37.0 bits (84), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESM 127
S ++VGNL + A +++ G + ++V + + G+S+GF VT+ S+E +
Sbjct: 84 SPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIY--DKLTGRSRGFGFVTMSSKEEV 141
Query: 128 SLVMERLPTLELHGR 142
++ EL GR
Sbjct: 142 EAACQQFNGYELDGR 156
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 22 EHVSTEHDDIDLYDDVTLQPFPEHTGRSPARYRHHRYSHHHSQATSSSHCN--LYVGNLT 79
+ V TE + D DVT G + A + S + S A+ + L+VG L+
Sbjct: 5 KQVDTEINGEDFTKDVTADGPGSENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLS 64
Query: 80 WWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
W TTE ++ D G + I+VK + G+S+GF + + E++ V
Sbjct: 65 WETTEKELRDHFGKYGEIESINVK--TDPQTGRSRGFAFIVFTNTEAIDKV 113
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGS 123
+ + H ++VG LT ++ ++ G + ++V+ + Q KGFC +T S
Sbjct: 129 KKAKARHGKIFVGGLTTEISDEEIKTYFGQFG--NIVEVEMPFDKQKSQRKGFCFITFDS 186
Query: 124 EESMSLVMERLPTLELHGRKPMVAYPT 150
E+ ++ ++ + P ++ G++ V T
Sbjct: 187 EQVVTDLL-KTPKQKIAGKEVDVKRAT 212
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L+VG L+W T ++ + A S G + + + G+S+GF V+ E+S + ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFG--EVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 133 RLPTLELHGRKPMVAYPT 150
+ EL+GR+ V T
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LYVGNL+W + + + G ++ + + +G+SKGF VTL S + + +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQG--KVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 133 RLPTLELHGRKPMVA 147
L +L GR+ V+
Sbjct: 317 SLNGADLDGRQIRVS 331
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESM 127
S L+VGNL++ A ++ S G + ++V + + G+S+GF VT+ + +
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIY--DKVTGRSRGFGFVTMSTAAEV 153
Query: 128 SLVMERLPTLELHGR 142
++ E GR
Sbjct: 154 EAAAQQFNGYEFEGR 168
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 52 RYRHHRYSHH------HSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFF 105
+Y +H + HH H A + + ++VG+L W EA ++ A S + + +K
Sbjct: 78 QYPNHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVI 137
Query: 106 ENASNGQSKGFCTVTLGSEESMSLVMERL 134
N NG S+G+ V S + V++
Sbjct: 138 RNKHNGSSEGYGFVEFESHDVADKVLQEF 166
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
S L++G + + E + +A G + +D + + G+S+GF VT S E+ S
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYG--EVVDTRVILDRETGRSRGFGFVTFTSSEAAS 95
Query: 129 LVMERLPTLELHGRKPMVAYP 149
++ L +LHGR V Y
Sbjct: 96 SAIQALDGRDLHGRVVKVNYA 116
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 55 HHRYSHHHSQATSSS--HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
H S H++A ++ +++G L+W TT+ D+ D G D +D + G+
Sbjct: 77 HSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFG--DVVDCTLKLDPITGR 134
Query: 113 SKGFCTVTLGSEESMSLVMER 133
S+GF V ES+ VM++
Sbjct: 135 SRGFGFVLFKESESVDKVMDQ 155
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
++VG L+ T E + + G + I++ +N +N + +GFC +T EE + +ME
Sbjct: 182 IFVGGLSPDTPEEKIREYFGGFGEVESIELPM-DNKTN-KRRGFCFITFKEEEPVKKIME 239
Query: 133 R 133
+
Sbjct: 240 K 240
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
S +YVGNL+W + + + G + +D K + +G+S+GF VT S + ++
Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQG--NVVDAKVVYDRDSGRSRGFGFVTYSSAKEVN 263
Query: 129 LVMERLPTLELHGRKPMVAYPTRNVLYQF 157
++ L ++L GR V+ QF
Sbjct: 264 DAIDSLNGIDLDGRSIRVSAAEERPRRQF 292
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESM 127
S L+VGNL + A ++ G + ++V + + +G+S+GF VT+ ++E +
Sbjct: 85 SEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIY--DKLSGRSRGFGFVTMSTKEEV 142
Query: 128 SLVMERLPTLELHGRKPMV 146
++ E+ GR V
Sbjct: 143 EAAEQQFNGYEIDGRAIRV 161
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L+VG L+W TT+ ++S G D ID +N +G+S+GF VT +++ V++
Sbjct: 9 LFVGGLSWETTQENLSRYFCRFG--DIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ 66
Query: 133 RLP 135
P
Sbjct: 67 NGP 69
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 41 PFPEHTGRSPARYRHHRYSHH------HSQATSSSHCNLYVGNLTWWTTEADMSDAIRSI 94
PFP + +Y +H + HH H A + + ++VG+L W EA ++ + S
Sbjct: 70 PFPPY-----HQYPNHHHLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASG 124
Query: 95 GVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL 134
+ + VK N +NG S+G+ V S + V+
Sbjct: 125 DEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREF 164
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 57 RYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGF 116
R H ++A +C L V L+ +TTE D+ + G DV + + +S+GF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGP--IADVSIVYDQQSRRSRGF 161
Query: 117 CTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148
V + + ER +EL GR+ V +
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDF 193
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 57 RYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGF 116
R H ++A +C L V L+ +TTE D+ + G DV + + +S+GF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGP--IADVSIVYDQQSRRSRGF 161
Query: 117 CTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148
V + + ER +EL GR+ V +
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDF 193
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 57 RYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGF 116
R H ++A +C L V L+ +TTE D+ + G DV + + +S+GF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGP--IADVSIVYDQQSRRSRGF 161
Query: 117 CTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148
V + + ER +EL GR+ V +
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDF 193
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 57 RYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGF 116
R H ++A +C L V L+ +TTE D+ + G DV + + +S+GF
Sbjct: 104 RRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGP--IADVSIVYDQQSRRSRGF 161
Query: 117 CTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148
V + + ER +EL GR+ V +
Sbjct: 162 AFVYFENVDDAKEAKERANGMELDGRRIRVDF 193
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
S +YVGNL+W + + + G + +D K + +G+S+GF VT S + ++
Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQG--NVVDAKVVYDRDSGRSRGFGFVTYSSSKEVN 262
Query: 129 LVMERLPTLELHGRKPMVAYPTRNVLYQF 157
++ L ++L GR V+ QF
Sbjct: 263 DAIDSLNGVDLDGRSIRVSAAEERPRRQF 291
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESM 127
S L+VGNL + A ++ G + ++V + + G+S+GF VT+ ++E +
Sbjct: 84 SEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIY--DKLTGRSRGFGFVTMSTKEEV 141
Query: 128 SLVMERLPTLELHGRKPMV 146
++ E+ GR V
Sbjct: 142 EAAEQQFNGYEIDGRAIRV 160
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 55 HHRYSHHHSQATSSS--HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
H S HS+A ++ +++G L+W TT+ D+ D G + +D + G+
Sbjct: 79 HSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFG--EVVDCTLKLDPITGR 136
Query: 113 SKGFCTVTLGSEESMSLVMER 133
S+GF V ES+ VM++
Sbjct: 137 SRGFGFVLFKESESVDKVMDQ 157
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
++VG L+ T E + + G + I++ +N +N + +GFC +T EE + +ME
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPM-DNKTN-KRRGFCFITFKEEEPVKKIME 241
Query: 133 R 133
+
Sbjct: 242 K 242
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T + + A G + +D K + G+S+GF VT E+SM +E
Sbjct: 11 FVGGLAWATDDRALETAFSQYG--EVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 134 LPTLELHGRKPMV 146
+ +L GR V
Sbjct: 69 MNGQDLDGRSITV 81
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
++VG L + TE D+ G + +++ + G+SKGFC + + S L ++
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYG--EIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVD 95
Query: 133 RLPTLELHGR 142
+++ GR
Sbjct: 96 NFNGIKIKGR 105
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 60 HHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTV 119
H + A +++G L+W TT+ D+ D G + +D + G+S+GF V
Sbjct: 86 HTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFG--EVVDCTLKLDPITGRSRGFGFV 143
Query: 120 TLGSEESMSLVMER 133
ES+ VM++
Sbjct: 144 LFKESESVDKVMDQ 157
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
++VG L+ T E + + G + I++ +N +N + +GFC +T EE + +ME
Sbjct: 184 IFVGGLSPDTPEEKIREYFGGFGEVESIELPM-DNKTN-KRRGFCFITFKEEEPVKKIME 241
Query: 133 R 133
+
Sbjct: 242 K 242
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
S C +++G L W TTE ++ + G D+K ++ + G+S+GF ++ S
Sbjct: 155 SKESCKMFIGGLNWDTTEDNLREYFGKYGT--VTDLKIMKDPATGRSRGFGFLSFEKPSS 212
Query: 127 MSLVMERLPTLELHGRKPMVAYP 149
+ V++ L+ P A P
Sbjct: 213 VDEVVKTQHILDGKVIDPKRAIP 235
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVP--DFIDVKFFENASNGQSKGFCTVTL 121
Q S+ LYVG+L + TE D +R I P ++ ++ G+SKG+ +T
Sbjct: 243 QKGSAGPMRLYVGSLHFNITE----DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298
Query: 122 GSEESMSLVMERLPTLELHGRKPMVAYPT 150
E +E+L EL GR V + T
Sbjct: 299 SDSECAKKALEQLNGFELAGRPMKVGHVT 327
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVP--DFIDVKFFENASNGQSKGFCTVTL 121
Q S+ LYVG+L + TE D +R I P ++ ++ G+SKG+ +T
Sbjct: 243 QKGSAGPMRLYVGSLHFNITE----DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298
Query: 122 GSEESMSLVMERLPTLELHGRKPMVAYPT 150
E +E+L EL GR V + T
Sbjct: 299 SDSECAKKALEQLNGFELAGRPMKVGHVT 327
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVP--DFIDVKFFENASNGQSKGFCTVTL 121
Q S+ LYVG+L + TE D +R I P ++ ++ G+SKG+ +T
Sbjct: 243 QKGSAGPMRLYVGSLHFNITE----DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITF 298
Query: 122 GSEESMSLVMERLPTLELHGRKPMVAYPT 150
E +E+L EL GR V + T
Sbjct: 299 SDSECAKKALEQLNGFELAGRPMKVGHVT 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,054,189
Number of Sequences: 539616
Number of extensions: 2779618
Number of successful extensions: 7970
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 7762
Number of HSP's gapped (non-prelim): 262
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)