Query psy8001
Match_columns 172
No_of_seqs 147 out of 1629
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 00:18:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 4.3E-20 9.3E-25 131.4 11.3 86 67-154 31-116 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.7E-18 3.8E-23 139.5 13.9 84 67-152 266-349 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 4.6E-18 1E-22 137.0 10.7 82 69-152 2-83 (352)
4 KOG0122|consensus 99.8 1.3E-17 2.8E-22 124.5 11.8 84 67-152 186-269 (270)
5 TIGR01659 sex-lethal sex-letha 99.8 7.2E-18 1.6E-22 135.6 11.0 85 65-151 102-186 (346)
6 PF00076 RRM_1: RNA recognitio 99.7 2E-17 4.4E-22 103.0 9.0 70 73-145 1-70 (70)
7 KOG0149|consensus 99.7 2.1E-17 4.5E-22 122.9 7.8 81 67-150 9-89 (247)
8 KOG0125|consensus 99.7 1.8E-16 3.9E-21 122.9 10.9 83 68-154 94-176 (376)
9 KOG0121|consensus 99.7 5.6E-17 1.2E-21 110.3 7.0 82 68-151 34-115 (153)
10 TIGR01645 half-pint poly-U bin 99.7 2.3E-16 5E-21 133.8 10.3 81 68-150 105-185 (612)
11 PF14259 RRM_6: RNA recognitio 99.7 2.9E-16 6.3E-21 98.2 8.0 70 73-145 1-70 (70)
12 KOG0130|consensus 99.7 1.7E-16 3.6E-21 108.9 7.3 86 64-151 66-151 (170)
13 TIGR01645 half-pint poly-U bin 99.7 4.1E-16 8.9E-21 132.3 10.9 83 69-153 203-285 (612)
14 TIGR01659 sex-lethal sex-letha 99.7 7.3E-16 1.6E-20 124.0 10.3 82 69-152 192-275 (346)
15 KOG4207|consensus 99.7 3E-16 6.5E-21 114.8 7.0 86 64-151 7-92 (256)
16 PLN03120 nucleic acid binding 99.6 1.5E-15 3.3E-20 116.0 10.0 76 70-151 4-79 (260)
17 TIGR01628 PABP-1234 polyadenyl 99.6 1.4E-15 3.1E-20 129.8 10.7 78 72-151 2-79 (562)
18 PLN03213 repressor of silencin 99.6 1.3E-15 2.7E-20 123.9 9.7 81 67-153 7-89 (759)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.6 6.2E-15 1.3E-19 124.3 14.4 82 68-151 293-374 (509)
20 KOG0145|consensus 99.6 9.4E-16 2E-20 115.8 8.2 85 67-153 38-122 (360)
21 KOG0148|consensus 99.6 1.1E-15 2.3E-20 115.9 8.4 84 68-153 60-143 (321)
22 KOG0107|consensus 99.6 1.4E-15 3.1E-20 108.5 7.8 78 68-152 8-85 (195)
23 KOG0113|consensus 99.6 3.8E-15 8.2E-20 114.2 10.6 89 65-155 96-184 (335)
24 KOG0145|consensus 99.6 3.3E-15 7.1E-20 112.9 9.5 86 64-151 272-357 (360)
25 KOG0117|consensus 99.6 2.3E-15 4.9E-20 120.8 8.9 82 68-151 81-163 (506)
26 TIGR01622 SF-CC1 splicing fact 99.6 5.8E-15 1.3E-19 123.0 10.6 79 70-150 186-264 (457)
27 TIGR01648 hnRNP-R-Q heterogene 99.6 5.9E-15 1.3E-19 124.9 10.4 80 68-150 56-136 (578)
28 TIGR01628 PABP-1234 polyadenyl 99.6 7.6E-15 1.6E-19 125.3 10.8 83 67-152 282-364 (562)
29 smart00362 RRM_2 RNA recogniti 99.6 1.4E-14 3.1E-19 89.4 9.3 72 72-147 1-72 (72)
30 PLN03121 nucleic acid binding 99.6 1.1E-14 2.3E-19 109.9 10.2 76 69-150 4-79 (243)
31 KOG0108|consensus 99.6 8.3E-15 1.8E-19 120.0 9.1 81 71-153 19-99 (435)
32 smart00360 RRM RNA recognition 99.6 2.2E-14 4.8E-19 88.2 8.7 71 75-147 1-71 (71)
33 KOG0131|consensus 99.6 4.7E-15 1E-19 106.5 5.8 83 66-150 5-87 (203)
34 KOG0148|consensus 99.6 1.4E-14 3E-19 110.0 8.6 77 67-151 161-237 (321)
35 COG0724 RNA-binding proteins ( 99.6 2.5E-14 5.4E-19 109.6 10.2 79 70-150 115-193 (306)
36 TIGR01622 SF-CC1 splicing fact 99.6 2.4E-14 5.2E-19 119.3 10.9 81 68-151 87-167 (457)
37 KOG0111|consensus 99.6 3.1E-15 6.8E-20 110.5 4.0 84 68-153 8-91 (298)
38 KOG0146|consensus 99.5 9.6E-15 2.1E-19 110.8 6.3 87 65-153 280-366 (371)
39 KOG0126|consensus 99.5 6.7E-16 1.4E-20 110.9 -0.3 82 68-151 33-114 (219)
40 TIGR01648 hnRNP-R-Q heterogene 99.5 6.8E-14 1.5E-18 118.6 10.8 78 70-157 233-312 (578)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 9.9E-14 2.2E-18 116.5 11.1 79 67-152 272-351 (481)
42 cd00590 RRM RRM (RNA recogniti 99.5 2.6E-13 5.6E-18 84.2 9.9 74 72-148 1-74 (74)
43 KOG0144|consensus 99.5 1.4E-13 3.1E-18 110.2 10.5 83 68-152 32-117 (510)
44 KOG0124|consensus 99.5 2.2E-14 4.7E-19 113.0 5.0 80 70-151 113-192 (544)
45 KOG0127|consensus 99.5 2.3E-13 5.1E-18 111.8 8.5 83 68-153 115-197 (678)
46 KOG0131|consensus 99.4 2.5E-13 5.3E-18 97.8 5.9 86 67-153 93-178 (203)
47 KOG0114|consensus 99.4 8.4E-13 1.8E-17 86.9 7.9 79 68-151 16-94 (124)
48 smart00361 RRM_1 RNA recogniti 99.4 8.9E-13 1.9E-17 82.6 7.7 62 84-147 2-70 (70)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.2E-12 2.6E-17 110.0 10.1 75 70-152 2-78 (481)
50 KOG0105|consensus 99.4 8.6E-13 1.9E-17 95.3 6.7 80 68-152 4-83 (241)
51 KOG0144|consensus 99.4 5.2E-13 1.1E-17 107.1 5.8 82 69-153 123-207 (510)
52 KOG0127|consensus 99.4 2.5E-12 5.3E-17 105.9 9.6 87 64-152 286-378 (678)
53 KOG0147|consensus 99.4 5.1E-13 1.1E-17 109.8 5.4 77 72-150 280-356 (549)
54 PF13893 RRM_5: RNA recognitio 99.4 2.5E-12 5.4E-17 76.9 6.9 56 87-149 1-56 (56)
55 KOG4849|consensus 99.3 2.5E-12 5.4E-17 100.9 7.4 160 3-163 10-173 (498)
56 KOG4661|consensus 99.3 1.2E-11 2.6E-16 102.5 11.4 86 67-154 402-487 (940)
57 KOG0109|consensus 99.3 1.9E-12 4E-17 99.4 5.9 73 71-153 3-75 (346)
58 KOG0117|consensus 99.3 3.2E-12 7E-17 102.9 7.4 74 71-154 260-333 (506)
59 KOG4208|consensus 99.3 8.6E-12 1.9E-16 91.5 7.7 83 68-152 47-130 (214)
60 KOG0415|consensus 99.3 5.2E-12 1.1E-16 99.3 6.8 83 67-151 236-318 (479)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.2 7.9E-11 1.7E-15 99.5 11.6 77 67-150 172-258 (509)
62 KOG4206|consensus 99.2 5.1E-11 1.1E-15 88.6 8.7 77 71-152 10-90 (221)
63 KOG4212|consensus 99.2 3.8E-11 8.2E-16 96.8 8.1 84 71-157 45-129 (608)
64 KOG0123|consensus 99.2 8.1E-11 1.8E-15 95.5 8.5 74 73-151 79-152 (369)
65 KOG0116|consensus 99.2 2.6E-10 5.6E-15 93.3 10.4 81 70-153 288-368 (419)
66 KOG0110|consensus 99.1 5E-11 1.1E-15 100.7 4.9 83 70-154 613-695 (725)
67 KOG0153|consensus 99.1 2.3E-10 5E-15 89.8 8.0 83 63-153 221-304 (377)
68 KOG0123|consensus 99.1 2E-10 4.4E-15 93.3 8.0 75 71-153 2-76 (369)
69 KOG4205|consensus 99.1 7.4E-11 1.6E-15 93.2 4.8 82 69-153 5-86 (311)
70 KOG4212|consensus 99.1 1.5E-10 3.2E-15 93.4 6.3 76 67-149 533-608 (608)
71 KOG1548|consensus 99.1 1.1E-09 2.5E-14 85.9 10.0 87 67-156 131-225 (382)
72 KOG0146|consensus 99.1 2.6E-10 5.7E-15 86.9 6.3 81 68-151 17-100 (371)
73 KOG0226|consensus 99.1 1.6E-10 3.5E-15 87.3 4.9 83 67-151 187-269 (290)
74 KOG0109|consensus 99.1 2.2E-10 4.8E-15 88.1 5.3 76 67-152 75-150 (346)
75 KOG0110|consensus 99.0 6.8E-10 1.5E-14 94.0 7.7 77 72-150 517-596 (725)
76 KOG0124|consensus 99.0 7.6E-10 1.6E-14 87.7 7.4 81 69-151 209-289 (544)
77 KOG0533|consensus 99.0 1.4E-09 3E-14 83.0 8.6 83 68-153 81-163 (243)
78 KOG0132|consensus 99.0 8E-10 1.7E-14 94.4 7.0 74 70-151 421-494 (894)
79 KOG4209|consensus 98.9 1.2E-09 2.5E-14 83.4 5.1 81 68-151 99-179 (231)
80 KOG4205|consensus 98.9 2.1E-09 4.5E-14 85.0 5.4 86 69-157 96-181 (311)
81 KOG1457|consensus 98.9 5.8E-08 1.3E-12 72.5 11.7 83 68-152 32-118 (284)
82 KOG0151|consensus 98.8 2.5E-08 5.5E-13 84.8 9.1 83 67-151 171-256 (877)
83 KOG0106|consensus 98.8 6.3E-09 1.4E-13 77.9 4.8 72 71-152 2-73 (216)
84 PF04059 RRM_2: RNA recognitio 98.8 6.2E-08 1.3E-12 64.1 9.0 80 70-151 1-86 (97)
85 KOG4211|consensus 98.8 3.6E-08 7.8E-13 80.7 8.6 81 66-152 6-86 (510)
86 KOG4454|consensus 98.7 6.7E-09 1.5E-13 77.1 3.1 85 69-157 8-92 (267)
87 KOG4660|consensus 98.7 1.4E-08 3E-13 84.2 4.7 72 67-145 72-143 (549)
88 KOG0120|consensus 98.6 7.4E-08 1.6E-12 80.2 4.7 84 67-152 286-369 (500)
89 KOG1190|consensus 98.5 4.7E-07 1E-11 72.9 8.4 79 70-155 297-376 (492)
90 PF11608 Limkain-b1: Limkain b 98.5 1.3E-06 2.7E-11 55.7 7.3 69 71-150 3-75 (90)
91 KOG4211|consensus 98.4 9.8E-07 2.1E-11 72.5 8.1 87 68-157 101-187 (510)
92 KOG1995|consensus 98.4 6.4E-07 1.4E-11 71.0 5.0 86 66-153 62-155 (351)
93 KOG1456|consensus 98.2 9.2E-05 2E-09 59.4 14.3 82 64-152 281-363 (494)
94 KOG1457|consensus 98.1 4.3E-06 9.4E-11 62.6 4.2 67 68-140 208-274 (284)
95 KOG0106|consensus 98.1 3.8E-06 8.2E-11 63.1 3.9 75 65-149 94-168 (216)
96 KOG0147|consensus 98.1 1.4E-06 3.1E-11 72.4 1.8 82 66-150 175-256 (549)
97 KOG4210|consensus 98.0 3.1E-06 6.8E-11 66.7 3.0 81 70-153 184-265 (285)
98 KOG4206|consensus 98.0 4.3E-05 9.3E-10 57.3 7.9 78 66-150 142-220 (221)
99 COG5175 MOT2 Transcriptional r 97.8 5.6E-05 1.2E-09 59.9 6.2 79 70-150 114-201 (480)
100 KOG4307|consensus 97.7 0.00013 2.8E-09 62.7 7.6 76 71-148 868-943 (944)
101 PF08777 RRM_3: RNA binding mo 97.7 7E-05 1.5E-09 50.4 4.7 71 70-148 1-76 (105)
102 KOG1365|consensus 97.7 0.00015 3.2E-09 58.5 6.5 81 70-151 280-361 (508)
103 KOG3152|consensus 97.6 4.3E-05 9.2E-10 58.3 2.7 73 69-143 73-157 (278)
104 KOG0105|consensus 97.6 0.0004 8.6E-09 50.9 7.2 69 64-141 109-177 (241)
105 KOG2314|consensus 97.5 0.00025 5.3E-09 59.7 6.1 80 68-150 56-142 (698)
106 KOG1190|consensus 97.4 0.00039 8.4E-09 56.5 6.3 78 68-151 412-490 (492)
107 KOG1548|consensus 97.4 0.00084 1.8E-08 53.4 7.3 85 67-157 262-357 (382)
108 KOG1365|consensus 97.3 0.00031 6.8E-09 56.6 4.5 82 68-151 159-242 (508)
109 KOG1456|consensus 97.2 0.0017 3.8E-08 52.3 7.2 82 68-156 118-203 (494)
110 KOG0120|consensus 97.2 0.0014 3E-08 55.1 6.7 63 86-150 425-490 (500)
111 PF08952 DUF1866: Domain of un 97.1 0.0019 4.1E-08 45.7 6.3 55 86-151 52-106 (146)
112 KOG2193|consensus 97.1 0.00054 1.2E-08 56.0 3.6 73 71-151 2-75 (584)
113 KOG0129|consensus 97.0 0.0024 5.2E-08 53.3 7.0 66 66-133 366-432 (520)
114 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0034 7.4E-08 36.8 5.2 52 71-131 2-53 (53)
115 KOG2416|consensus 96.9 0.0045 9.7E-08 52.7 7.4 83 62-151 436-521 (718)
116 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0064 1.4E-07 40.5 6.7 77 70-150 6-90 (100)
117 KOG0112|consensus 96.8 0.0072 1.6E-07 53.7 8.6 80 66-153 451-532 (975)
118 KOG0128|consensus 96.8 0.00065 1.4E-08 59.6 2.1 80 70-152 736-815 (881)
119 KOG0129|consensus 96.8 0.0047 1E-07 51.7 6.7 63 70-135 259-327 (520)
120 KOG4307|consensus 96.7 0.0063 1.4E-07 52.8 6.8 85 63-150 427-512 (944)
121 KOG2253|consensus 96.6 0.0047 1E-07 53.0 5.7 73 66-149 36-108 (668)
122 KOG4676|consensus 96.5 0.0045 9.8E-08 50.2 4.7 75 72-149 9-86 (479)
123 KOG0128|consensus 96.5 0.00023 5E-09 62.3 -2.9 69 70-141 667-735 (881)
124 PF10309 DUF2414: Protein of u 96.5 0.031 6.6E-07 33.8 7.1 55 71-134 6-62 (62)
125 KOG2202|consensus 96.5 0.0018 3.8E-08 49.7 2.1 62 86-150 84-146 (260)
126 PF03467 Smg4_UPF3: Smg-4/UPF3 96.3 0.0065 1.4E-07 44.7 4.1 81 68-150 5-96 (176)
127 PF11767 SET_assoc: Histone ly 96.2 0.023 5E-07 34.8 5.6 55 81-146 11-65 (66)
128 KOG1855|consensus 95.9 0.011 2.4E-07 48.5 4.1 68 68-137 229-309 (484)
129 KOG0115|consensus 95.8 0.013 2.9E-07 45.0 4.1 75 71-148 32-110 (275)
130 PF07576 BRAP2: BRCA1-associat 95.8 0.14 3E-06 34.7 8.5 67 72-141 15-81 (110)
131 KOG2068|consensus 95.7 0.0055 1.2E-07 48.7 1.5 78 71-151 78-162 (327)
132 KOG1996|consensus 95.5 0.062 1.3E-06 42.3 6.8 63 85-149 301-364 (378)
133 PF04847 Calcipressin: Calcipr 95.4 0.08 1.7E-06 39.2 6.8 62 83-152 8-71 (184)
134 PF15023 DUF4523: Protein of u 95.2 0.16 3.6E-06 35.9 7.4 76 65-150 81-160 (166)
135 PF08675 RNA_bind: RNA binding 95.2 0.082 1.8E-06 33.9 5.3 53 72-135 11-63 (87)
136 PF03880 DbpA: DbpA RNA bindin 94.7 0.061 1.3E-06 33.6 4.0 61 80-149 11-74 (74)
137 KOG0112|consensus 94.1 0.012 2.6E-07 52.3 -0.4 80 67-149 369-448 (975)
138 KOG4410|consensus 93.9 1.3 2.8E-05 35.0 10.3 50 68-124 328-377 (396)
139 KOG2591|consensus 93.8 0.16 3.6E-06 43.2 5.7 75 67-148 172-248 (684)
140 KOG4210|consensus 93.4 0.045 9.7E-07 43.3 1.6 82 68-151 86-167 (285)
141 KOG4285|consensus 92.5 0.58 1.3E-05 37.1 6.6 70 71-150 198-268 (350)
142 KOG2135|consensus 91.7 0.11 2.4E-06 43.3 1.9 71 72-151 374-445 (526)
143 KOG0804|consensus 89.4 2.4 5.2E-05 35.5 7.6 69 70-141 74-142 (493)
144 KOG4660|consensus 89.2 0.7 1.5E-05 39.4 4.6 85 67-151 358-472 (549)
145 smart00596 PRE_C2HC PRE_C2HC d 88.6 0.87 1.9E-05 28.0 3.5 62 85-150 2-63 (69)
146 KOG4574|consensus 86.9 3.7 8.1E-05 37.1 7.7 72 72-151 300-373 (1007)
147 KOG4676|consensus 85.1 0.22 4.8E-06 40.7 -0.5 71 70-147 151-221 (479)
148 PF07530 PRE_C2HC: Associated 84.7 2.3 5E-05 26.1 4.0 63 85-151 2-64 (68)
149 KOG4483|consensus 82.1 4.8 0.00011 33.3 5.9 57 69-133 390-446 (528)
150 PF03468 XS: XS domain; Inter 73.1 15 0.00032 25.1 5.5 46 82-132 29-75 (116)
151 KOG2318|consensus 72.0 27 0.00058 30.5 7.8 81 67-149 171-305 (650)
152 KOG4454|consensus 68.9 1 2.2E-05 34.3 -1.0 73 68-143 78-154 (267)
153 KOG2193|consensus 64.5 0.63 1.4E-05 38.6 -3.0 77 70-152 80-157 (584)
154 KOG4019|consensus 64.2 6.8 0.00015 28.9 2.5 73 71-151 11-89 (193)
155 COG0724 RNA-binding proteins ( 58.5 16 0.00035 27.1 3.9 65 66-132 221-285 (306)
156 PF15513 DUF4651: Domain of un 57.4 26 0.00057 21.1 3.8 18 85-104 9-26 (62)
157 PRK14548 50S ribosomal protein 56.1 51 0.0011 21.1 6.4 57 72-132 22-79 (84)
158 PRK11558 putative ssRNA endonu 55.9 27 0.0006 23.0 4.0 49 70-123 27-75 (97)
159 PF09707 Cas_Cas2CT1978: CRISP 55.3 36 0.00077 21.9 4.4 48 70-122 25-72 (86)
160 TIGR03636 L23_arch archaeal ri 55.2 50 0.0011 20.7 6.3 56 72-131 15-71 (77)
161 PRK10905 cell division protein 50.3 81 0.0018 25.5 6.6 64 68-137 245-309 (328)
162 KOG2295|consensus 48.7 2.6 5.7E-05 36.2 -2.0 73 69-143 230-302 (648)
163 KOG1295|consensus 47.8 24 0.00053 29.0 3.4 69 70-140 7-78 (376)
164 KOG0226|consensus 46.1 33 0.00072 26.9 3.7 77 67-146 93-172 (290)
165 PRK12280 rplW 50S ribosomal pr 40.8 1.3E+02 0.0028 21.7 5.9 35 72-107 23-58 (158)
166 CHL00030 rpl23 ribosomal prote 40.7 1E+02 0.0022 20.1 5.4 35 72-107 20-55 (93)
167 TIGR01873 cas_CT1978 CRISPR-as 38.6 71 0.0015 20.6 3.9 48 70-123 25-74 (87)
168 KOG4008|consensus 35.6 34 0.00074 26.4 2.3 29 67-95 37-65 (261)
169 KOG0156|consensus 33.5 1.2E+02 0.0025 26.1 5.5 59 74-144 36-97 (489)
170 PRK10629 EnvZ/OmpR regulon mod 30.3 1.9E+02 0.0041 20.0 8.1 72 70-150 35-109 (127)
171 PF03439 Spt5-NGN: Early trans 29.2 74 0.0016 20.1 2.9 26 113-138 43-68 (84)
172 PF11823 DUF3343: Protein of u 28.1 58 0.0013 19.8 2.2 28 115-142 2-29 (73)
173 COG0030 KsgA Dimethyladenosine 28.0 73 0.0016 25.0 3.1 35 70-106 95-129 (259)
174 KOG2855|consensus 27.6 1E+02 0.0022 25.1 3.9 49 68-121 59-107 (330)
175 PF10567 Nab6_mRNP_bdg: RNA-re 27.3 1.6E+02 0.0034 23.7 4.8 80 69-150 14-106 (309)
176 PF00276 Ribosomal_L23: Riboso 27.0 1.4E+02 0.003 19.2 3.9 34 72-106 21-55 (91)
177 PF11215 DUF3010: Protein of u 26.7 1.9E+02 0.004 20.5 4.6 41 89-137 55-95 (138)
178 cd04908 ACT_Bt0572_1 N-termina 26.6 1.4E+02 0.003 17.4 7.5 47 85-137 16-62 (66)
179 PF05189 RTC_insert: RNA 3'-te 26.4 1.8E+02 0.0038 18.9 4.4 49 72-121 12-64 (103)
180 PF04026 SpoVG: SpoVG; InterP 25.9 1.6E+02 0.0034 18.8 3.9 26 98-123 2-27 (84)
181 PF04127 DFP: DNA / pantothena 23.5 3E+02 0.0065 20.2 5.6 59 72-134 20-79 (185)
182 cd00027 BRCT Breast Cancer Sup 23.2 1.5E+02 0.0032 16.5 3.3 25 71-95 2-26 (72)
183 KOG4365|consensus 22.9 14 0.00029 31.2 -1.8 77 72-151 5-81 (572)
184 PF07292 NID: Nmi/IFP 35 domai 22.7 44 0.00095 21.6 0.9 23 68-90 50-72 (88)
185 PF11411 DNA_ligase_IV: DNA li 22.3 71 0.0015 17.0 1.5 15 81-95 20-34 (36)
186 PTZ00191 60S ribosomal protein 21.7 3.1E+02 0.0067 19.5 6.3 53 72-128 83-136 (145)
187 KOG4840|consensus 21.6 2E+02 0.0043 22.4 4.3 74 70-149 37-115 (299)
188 COG5193 LHP1 La protein, small 21.1 39 0.00084 28.2 0.5 60 71-132 175-244 (438)
189 cd04889 ACT_PDH-BS-like C-term 21.0 1.7E+02 0.0036 16.2 6.0 43 85-131 13-55 (56)
190 PRK11901 hypothetical protein; 20.3 4.8E+02 0.01 21.3 11.2 65 67-137 242-307 (327)
191 PF00398 RrnaAD: Ribosomal RNA 20.2 1.5E+02 0.0033 22.8 3.6 27 69-95 96-124 (262)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=4.3e-20 Score=131.45 Aligned_cols=86 Identities=27% Similarity=0.475 Sum_probs=80.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+||++.+++++|+++|.+|| .|..+.|+.|+.+++++|||||+|.+.++|+.||+.||+..|+|+.|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCc
Q psy8001 147 AYPTRNVL 154 (172)
Q Consensus 147 ~~a~~~~~ 154 (172)
+++..+..
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99986543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=1.7e-18 Score=139.51 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=79.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...+.+|||+|||+.+++++|+++|++|| .|..++|++|+.+|.++|||||+|.+.++|.+||..|||..|+||.|+|
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG--~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V 343 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFG--AVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQV 343 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.|+..+
T Consensus 344 ~~~~~~ 349 (352)
T TIGR01661 344 SFKTNK 349 (352)
T ss_pred EEccCC
Confidence 998754
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=4.6e-18 Score=137.04 Aligned_cols=82 Identities=26% Similarity=0.341 Sum_probs=78.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||..+++++|+++|+.|| .|..|+|++|+.+|+++|||||+|.+.++|++||+.|||..|.|+.|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G--~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIG--EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccC--CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 357899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
+++.
T Consensus 80 a~~~ 83 (352)
T TIGR01661 80 ARPS 83 (352)
T ss_pred eccc
Confidence 8753
No 4
>KOG0122|consensus
Probab=99.76 E-value=1.3e-17 Score=124.55 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=80.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
..+.++|-|.||+.+++|++|+++|.+|| .+..+.|.+|+.||.++|||||.|.+.++|.+||+.|||.-+++-.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg--~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFG--PITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccC--ccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 44678899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
+|++|+
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999985
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=7.2e-18 Score=135.57 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=80.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|..|| .|..|+|+.|+.+++++|||||+|.+.++|++||+.||+..|.+++|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G--~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i 179 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIG--PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRL 179 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCcee
Confidence 3445678999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEeccCC
Q psy8001 145 MVAYPTR 151 (172)
Q Consensus 145 ~v~~a~~ 151 (172)
+|.++++
T Consensus 180 ~V~~a~p 186 (346)
T TIGR01659 180 KVSYARP 186 (346)
T ss_pred eeecccc
Confidence 9999875
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=2e-17 Score=102.96 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 73 v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
|||+|||..+++++|+++|++|| .+..+.+..+ .++..+|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g--~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFG--KIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTS--TEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhh--hccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999 8999999998 4888999999999999999999999999999999875
No 7
>KOG0149|consensus
Probab=99.72 E-value=2.1e-17 Score=122.93 Aligned_cols=81 Identities=21% Similarity=0.468 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
+..-++||||+|+|.+..++|+++|.+|| .|.+..|+.|+.+|++||||||+|++.++|.+|++- -...|+||+-+|
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfG--eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFG--EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhC--ceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 44457899999999999999999999999 999999999999999999999999999999999984 557899999999
Q ss_pred eccC
Q psy8001 147 AYPT 150 (172)
Q Consensus 147 ~~a~ 150 (172)
++|.
T Consensus 86 nlA~ 89 (247)
T KOG0149|consen 86 NLAS 89 (247)
T ss_pred chhh
Confidence 9876
No 8
>KOG0125|consensus
Probab=99.70 E-value=1.8e-16 Score=122.86 Aligned_cols=83 Identities=25% Similarity=0.314 Sum_probs=75.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
....+|+|+|||+...+-||+.+|.+|| .|..|.|+.+. ..+||||||+|.+.++|++|.+.|||..+.||+|.|.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG--~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFG--KVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhC--ceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 3446899999999999999999999999 99999999873 4579999999999999999999999999999999999
Q ss_pred ccCCCCc
Q psy8001 148 YPTRNVL 154 (172)
Q Consensus 148 ~a~~~~~ 154 (172)
.|..+..
T Consensus 170 ~ATarV~ 176 (376)
T KOG0125|consen 170 NATARVH 176 (376)
T ss_pred ccchhhc
Confidence 9987543
No 9
>KOG0121|consensus
Probab=99.70 E-value=5.6e-17 Score=110.27 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=77.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++||||||.+.++|+.|.++|+.+| .|..|.+-.|+.+-...|||||+|.+.++|+.|++.++|..|+.+.|++.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG--~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCG--DIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhcc--chheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3458999999999999999999999999 99999999999888899999999999999999999999999999999999
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
|...
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 9853
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.68 E-value=2.3e-16 Score=133.79 Aligned_cols=81 Identities=25% Similarity=0.451 Sum_probs=77.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++||||||++.+++++|+++|.+|| .|..|+|++|+.+|+++|||||+|.+.++|++|++.|||..|+||.|+|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG--~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFG--PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccC--CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 4568999999999999999999999999 99999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q psy8001 148 YPT 150 (172)
Q Consensus 148 ~a~ 150 (172)
+..
T Consensus 183 rp~ 185 (612)
T TIGR01645 183 RPS 185 (612)
T ss_pred ccc
Confidence 654
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=2.9e-16 Score=98.18 Aligned_cols=70 Identities=36% Similarity=0.517 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 73 v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
|||+|||+++++++|+++|+.+| .+..+++..++. +..+|+|||+|.+.++|..|++.+++..++|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g--~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFG--PVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSS--BEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcC--CcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999 899999999986 88999999999999999999999999999999875
No 12
>KOG0130|consensus
Probab=99.67 E-value=1.7e-16 Score=108.95 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=80.9
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 64 ~~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
|...-.++.|||.++...++|++|.+.|..|| .|..+++..|+.||..+|||+|+|.+..+|++|+..|||..|.|+.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyG--eiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYG--EIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcc--cccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 34455689999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cEEeccCC
Q psy8001 144 PMVAYPTR 151 (172)
Q Consensus 144 l~v~~a~~ 151 (172)
|.|.|+--
T Consensus 144 v~VDw~Fv 151 (170)
T KOG0130|consen 144 VSVDWCFV 151 (170)
T ss_pred eeEEEEEe
Confidence 99999964
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=4.1e-16 Score=132.28 Aligned_cols=83 Identities=14% Similarity=0.238 Sum_probs=78.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+||++.+++++|+++|+.|| .|..++|.+++.+|+++|||||+|.+.++|..||+.||+..|+|+.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 446899999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy8001 149 PTRNV 153 (172)
Q Consensus 149 a~~~~ 153 (172)
+...+
T Consensus 281 Ai~pP 285 (612)
T TIGR01645 281 CVTPP 285 (612)
T ss_pred cCCCc
Confidence 98654
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=7.3e-16 Score=124.01 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=76.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC--cccEE
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG--RKPMV 146 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g--~~l~v 146 (172)
..++|||+|||+.+++++|+++|++|| .|..++|++++.+++++|||||+|.+.++|++||+.||+..+.+ +.|+|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG--~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYG--QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcC--CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 356899999999999999999999999 89999999999999999999999999999999999999998876 68999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.+++..
T Consensus 270 ~~a~~~ 275 (346)
T TIGR01659 270 RLAEEH 275 (346)
T ss_pred EECCcc
Confidence 998753
No 15
>KOG4207|consensus
Probab=99.65 E-value=3e-16 Score=114.82 Aligned_cols=86 Identities=22% Similarity=0.278 Sum_probs=81.8
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 64 ~~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
+++....+.|.|-||.+.++.++|+.+|++|| .|-.|.|.+|+.|+.++|||||-|.+..+|+.|+++|+|.+|+|+.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG--~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe 84 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYG--RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE 84 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhC--cccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccce
Confidence 46667788999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cEEeccCC
Q psy8001 144 PMVAYPTR 151 (172)
Q Consensus 144 l~v~~a~~ 151 (172)
|.|..|+-
T Consensus 85 lrVq~ary 92 (256)
T KOG4207|consen 85 LRVQMARY 92 (256)
T ss_pred eeehhhhc
Confidence 99999873
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.5e-15 Score=116.00 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=70.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
.++|||+||++.+++++|+++|+.|| .|..|.|+.++. .+|||||+|.+.++|+.||. |||..|.|+.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G--~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSG--DIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEec
Confidence 46899999999999999999999999 999999998763 46899999999999999996 9999999999999998
Q ss_pred CC
Q psy8001 150 TR 151 (172)
Q Consensus 150 ~~ 151 (172)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 73
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.64 E-value=1.4e-15 Score=129.81 Aligned_cols=78 Identities=23% Similarity=0.384 Sum_probs=75.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccCC
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTR 151 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~~ 151 (172)
+|||+|||..++|++|+++|++|| .|..|+|++|+.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G--~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFG--PVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999 899999999999999999999999999999999999999999999999999864
No 18
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=1.3e-15 Score=123.90 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCH--HHHHHHHHHCCCceeCCccc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSE--ESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~--~~a~~al~~l~g~~l~g~~l 144 (172)
...+.+||||||++.+++++|+..|+.|| .|..|.|++. +| +|||||+|.+. .++.+||..|||..+.|+.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFG--sVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMG--TVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 44568999999999999999999999999 9999999944 66 89999999977 78999999999999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
+|..|++.-
T Consensus 81 KVNKAKP~Y 89 (759)
T PLN03213 81 RLEKAKEHY 89 (759)
T ss_pred EEeeccHHH
Confidence 999998743
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.64 E-value=6.2e-15 Score=124.30 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=77.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
....+|||+|||+.+++++|+++|..|| .+..+.|+.++.+|.++|||||+|.+.++|..||+.|||..|+|+.|.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFG--DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3457899999999999999999999999 89999999999899999999999999999999999999999999999999
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
++..
T Consensus 371 ~a~~ 374 (509)
T TIGR01642 371 RACV 374 (509)
T ss_pred ECcc
Confidence 9864
No 20
>KOG0145|consensus
Probab=99.63 E-value=9.4e-16 Score=115.84 Aligned_cols=85 Identities=24% Similarity=0.316 Sum_probs=80.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|.|.-||..++++|++.+|...| .|++|++++|+.+|++-||+||.|-++++|++||..|||..|..+.|+|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiG--eiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhccc--ceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 45677899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
++|++.+
T Consensus 116 SyARPSs 122 (360)
T KOG0145|consen 116 SYARPSS 122 (360)
T ss_pred EeccCCh
Confidence 9998743
No 21
>KOG0148|consensus
Probab=99.63 E-value=1.1e-15 Score=115.91 Aligned_cols=84 Identities=21% Similarity=0.379 Sum_probs=80.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...+-|||+.|...++-+.|++.|.+|| .|..++|++|..|+++|||+||.|.+.++|+.||..|||.=|++|.|+..
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFG--evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFG--EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhcccc--ccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 3367899999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy8001 148 YPTRNV 153 (172)
Q Consensus 148 ~a~~~~ 153 (172)
||.+++
T Consensus 138 WATRKp 143 (321)
T KOG0148|consen 138 WATRKP 143 (321)
T ss_pred ccccCc
Confidence 998765
No 22
>KOG0107|consensus
Probab=99.62 E-value=1.4e-15 Score=108.55 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++||||||+..+++.||...|..|| .+..|-|-.+ ..|||||+|.+.-+|+.|+..|+|..|+|..|+|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG--~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYG--PLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcC--cceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 4578999999999999999999999999 8888877554 58999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
.+.-.
T Consensus 81 ~S~G~ 85 (195)
T KOG0107|consen 81 LSTGR 85 (195)
T ss_pred eecCC
Confidence 98753
No 23
>KOG0113|consensus
Probab=99.62 E-value=3.8e-15 Score=114.24 Aligned_cols=89 Identities=18% Similarity=0.355 Sum_probs=82.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
+..++=++|||+-|++.++|..|+..|..|| .|..|+|++|+.||+++|||||+|...-+..+|.+..+|..|+|+.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG--~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYG--PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcC--cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 3456678999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCcc
Q psy8001 145 MVAYPTRNVLY 155 (172)
Q Consensus 145 ~v~~a~~~~~~ 155 (172)
.|.+-......
T Consensus 174 ~VDvERgRTvk 184 (335)
T KOG0113|consen 174 LVDVERGRTVK 184 (335)
T ss_pred EEEeccccccc
Confidence 99988764433
No 24
>KOG0145|consensus
Probab=99.62 E-value=3.3e-15 Score=112.92 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=80.6
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 64 ~~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
+.....+++|||-||.++++|.-|+++|.+|| .+..|+|++|-.+.+++||+||++.+.++|..||..|||..+++|.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFG--Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv 349 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFG--AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 349 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCccc--ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceE
Confidence 34456689999999999999999999999999 9999999999989999999999999999999999999999999999
Q ss_pred cEEeccCC
Q psy8001 144 PMVAYPTR 151 (172)
Q Consensus 144 l~v~~a~~ 151 (172)
|.|++...
T Consensus 350 LQVsFKtn 357 (360)
T KOG0145|consen 350 LQVSFKTN 357 (360)
T ss_pred EEEEEecC
Confidence 99998754
No 25
>KOG0117|consensus
Probab=99.61 E-value=2.3e-15 Score=120.82 Aligned_cols=82 Identities=18% Similarity=0.408 Sum_probs=76.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC-CcccEE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH-GRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~-g~~l~v 146 (172)
..+|-||||.||.++.|++|..+|.+.| .|-.++||+|+++|.++|||||+|.+.++|+.||+.||+.+|. |+.|.|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG--~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIG--KIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhcc--ceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 6789999999999999999999999999 9999999999999999999999999999999999999999885 888887
Q ss_pred eccCC
Q psy8001 147 AYPTR 151 (172)
Q Consensus 147 ~~a~~ 151 (172)
..+-.
T Consensus 159 c~Sva 163 (506)
T KOG0117|consen 159 CVSVA 163 (506)
T ss_pred EEeee
Confidence 76653
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=5.8e-15 Score=123.01 Aligned_cols=79 Identities=32% Similarity=0.537 Sum_probs=76.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
..+|||+||+..+++++|+++|..|| .|..|.++.++.+|+++|||||+|.+.++|..|++.|||..|.|+.|+|.++
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEc
Confidence 57899999999999999999999999 8999999999988999999999999999999999999999999999999997
Q ss_pred C
Q psy8001 150 T 150 (172)
Q Consensus 150 ~ 150 (172)
.
T Consensus 264 ~ 264 (457)
T TIGR01622 264 Q 264 (457)
T ss_pred c
Confidence 6
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.60 E-value=5.9e-15 Score=124.94 Aligned_cols=80 Identities=20% Similarity=0.388 Sum_probs=73.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC-CcccEE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH-GRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~-g~~l~v 146 (172)
..+++|||+|||++++|++|+++|+++| .|..++|++| .+|+++|||||+|.+.++|++||+.||+..|. |+.|.|
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G--~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAG--PIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhC--CEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 3568999999999999999999999999 8999999999 69999999999999999999999999999885 788777
Q ss_pred eccC
Q psy8001 147 AYPT 150 (172)
Q Consensus 147 ~~a~ 150 (172)
..+.
T Consensus 133 ~~S~ 136 (578)
T TIGR01648 133 CISV 136 (578)
T ss_pred cccc
Confidence 6654
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.59 E-value=7.6e-15 Score=125.32 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+||++.+++++|+++|+.|| .|..++++.+. +|.++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G--~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V 358 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECG--EITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYV 358 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcC--CeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEE
Confidence 34567899999999999999999999999 89999999994 8999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.++.++
T Consensus 359 ~~a~~k 364 (562)
T TIGR01628 359 ALAQRK 364 (562)
T ss_pred EeccCc
Confidence 999864
No 29
>smart00362 RRM_2 RNA recognition motif.
Probab=99.59 E-value=1.4e-14 Score=89.41 Aligned_cols=72 Identities=36% Similarity=0.484 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
+|||+|||..+++++|+++|.++| .+..+.+..++ +.++|+|||+|.+.++|+.|++.|++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g--~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFG--PIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcC--CEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999 89999988876 6788999999999999999999999999999998874
No 30
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=109.91 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=69.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
.+++|||+||++.+++++|+++|+.|| .|..|+|+++. ..+|||||+|.+.++++.|+. |+|..|.++.|.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G--~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCG--AIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcC--CeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 568999999999999999999999999 99999999874 456899999999999999995 999999999999987
Q ss_pred cC
Q psy8001 149 PT 150 (172)
Q Consensus 149 a~ 150 (172)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 54
No 31
>KOG0108|consensus
Probab=99.58 E-value=8.3e-15 Score=120.01 Aligned_cols=81 Identities=22% Similarity=0.450 Sum_probs=78.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
+.|||||+|+.+++++|..+|+..| .|..++++.|+.+|+.+||||++|.+.+.++.|++.|||.++.||+|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g--~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVG--PVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccC--ccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 8999999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy8001 151 RNV 153 (172)
Q Consensus 151 ~~~ 153 (172)
...
T Consensus 97 ~~~ 99 (435)
T KOG0108|consen 97 NRK 99 (435)
T ss_pred ccc
Confidence 543
No 32
>smart00360 RRM RNA recognition motif.
Probab=99.57 E-value=2.2e-14 Score=88.21 Aligned_cols=71 Identities=34% Similarity=0.474 Sum_probs=66.8
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 75 VGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 75 V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
|+|||..+++++|+++|.++| .+..+.+..++.++.++|||||+|.+.++|..|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g--~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFG--KIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhC--CEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999 89999999988778899999999999999999999999999999998874
No 33
>KOG0131|consensus
Probab=99.56 E-value=4.7e-15 Score=106.55 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=78.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
+.+...+||||||+..++++.|+++|-+.| .+..+++.+|+.++..+||||++|.++++|+-|++.||...|.||.|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqag--pVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIr 82 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAG--PVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIR 82 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcC--ceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeE
Confidence 345567999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EeccC
Q psy8001 146 VAYPT 150 (172)
Q Consensus 146 v~~a~ 150 (172)
|..+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 99886
No 34
>KOG0148|consensus
Probab=99.56 E-value=1.4e-14 Score=109.96 Aligned_cols=77 Identities=21% Similarity=0.406 Sum_probs=72.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...+|+|||||++..++|++|++.|+.|| .|.+|++..+ +||+||.|.+.|+|..||..+|+.+|.|+.++|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG--~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFG--PIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCC--cceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 46789999999999999999999999999 9999999876 589999999999999999999999999999999
Q ss_pred eccCC
Q psy8001 147 AYPTR 151 (172)
Q Consensus 147 ~~a~~ 151 (172)
.|-+.
T Consensus 233 sWGKe 237 (321)
T KOG0148|consen 233 SWGKE 237 (321)
T ss_pred ecccc
Confidence 99885
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=2.5e-14 Score=109.63 Aligned_cols=79 Identities=33% Similarity=0.511 Sum_probs=76.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
.++|||+||++.+++++|+++|..|| .+..+.+..++.++..+|||||+|.+.+++..|++.|+|..|.|++|.|.++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g--~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFG--PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC--ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 58999999999999999999999999 8999999999889999999999999999999999999999999999999996
Q ss_pred C
Q psy8001 150 T 150 (172)
Q Consensus 150 ~ 150 (172)
.
T Consensus 193 ~ 193 (306)
T COG0724 193 Q 193 (306)
T ss_pred c
Confidence 5
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=2.4e-14 Score=119.30 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=76.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
....+|||+|||..+++++|+++|+++| .|..|+|+.|+.+|+++|||||+|.+.++|.+||. |+|..|.|+.|.|.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G--~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVG--KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3467899999999999999999999999 99999999999999999999999999999999997 89999999999998
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
++..
T Consensus 164 ~~~~ 167 (457)
T TIGR01622 164 SSQA 167 (457)
T ss_pred ecch
Confidence 8753
No 37
>KOG0111|consensus
Probab=99.55 E-value=3.1e-15 Score=110.52 Aligned_cols=84 Identities=24% Similarity=0.326 Sum_probs=79.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
....+||||+|...++|.-|...|-+|| +|..|.+..|-.+++++|||||+|...++|.+||.-||+.+|.||.|+|.
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFG--DI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFG--DIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhcccccc--chhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 3457899999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy8001 148 YPTRNV 153 (172)
Q Consensus 148 ~a~~~~ 153 (172)
+|+|..
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 999844
No 38
>KOG0146|consensus
Probab=99.55 E-value=9.6e-15 Score=110.80 Aligned_cols=87 Identities=17% Similarity=0.286 Sum_probs=82.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
...+++|+|||--||...++.||.+.|-.|| .|.+.++..|+.|..+|+|+||.|.+..+++.||..|||..|+-++|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFG--hivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFG--HIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhcccc--ceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 4578899999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
+|...+++.
T Consensus 358 KVQLKRPkd 366 (371)
T KOG0146|consen 358 KVQLKRPKD 366 (371)
T ss_pred hhhhcCccc
Confidence 999887654
No 39
>KOG0126|consensus
Probab=99.54 E-value=6.7e-16 Score=110.93 Aligned_cols=82 Identities=23% Similarity=0.454 Sum_probs=77.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
.+..-|||||||+..||-+|--.|++|| .+..|.+++|+.||+++||||+.|.+.-+.-.|+.-|||..|.||.|+|.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyG--e~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYG--EIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccC--ceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 3556899999999999999999999999 89999999999999999999999999999999999999999999999998
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
+...
T Consensus 111 Hv~~ 114 (219)
T KOG0126|consen 111 HVSN 114 (219)
T ss_pred eccc
Confidence 7753
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=6.8e-14 Score=118.57 Aligned_cols=78 Identities=24% Similarity=0.241 Sum_probs=71.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhc--CCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSI--GVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~--g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
..+|||+||++.+++++|+++|++| | .|..|+++ ++||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G--~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPG--KVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCC--ceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4689999999999999999999999 9 89988764 4699999999999999999999999999999999
Q ss_pred ccCCCCcchh
Q psy8001 148 YPTRNVLYQF 157 (172)
Q Consensus 148 ~a~~~~~~~~ 157 (172)
++++....++
T Consensus 303 ~Akp~~~~~~ 312 (578)
T TIGR01648 303 LAKPVDKKSY 312 (578)
T ss_pred EccCCCcccc
Confidence 9998765544
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.52 E-value=9.9e-14 Score=116.51 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=72.8
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 67 SSSHCNLYVGNLTW-WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 67 ~~~~~~v~V~nL~~-~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
...+++|||+||++ .+++++|+++|+.|| .|..|+|+.++ +|||||+|.+.++|+.||..|||..|.|+.|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~ 344 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--NVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLR 344 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 34678999999998 699999999999999 99999998863 68999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.+++..
T Consensus 345 v~~s~~~ 351 (481)
T TIGR01649 345 VCPSKQQ 351 (481)
T ss_pred EEEcccc
Confidence 9998764
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=2.6e-13 Score=84.17 Aligned_cols=74 Identities=32% Similarity=0.477 Sum_probs=68.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
+|+|+|||..+++++|+++|..+| .+..+.+..++.+ ..+|+|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g--~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFG--KVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcC--CEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999 8999999887744 6789999999999999999999999999999999874
No 43
>KOG0144|consensus
Probab=99.51 E-value=1.4e-13 Score=110.25 Aligned_cols=83 Identities=24% Similarity=0.445 Sum_probs=76.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc-eeCC--ccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL-ELHG--RKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~-~l~g--~~l 144 (172)
.+..++|||-+|..|+|.||+.+|++|| .|.+|.|++||.++.++|||||.|.+.++|.+|+.+||+. .|-| ..|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg--~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYG--NVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhC--ceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 5567899999999999999999999999 8999999999999999999999999999999999999988 4444 689
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
.|++|...
T Consensus 110 qvk~Ad~E 117 (510)
T KOG0144|consen 110 QVKYADGE 117 (510)
T ss_pred eecccchh
Confidence 99999853
No 44
>KOG0124|consensus
Probab=99.50 E-value=2.2e-14 Score=113.03 Aligned_cols=80 Identities=25% Similarity=0.461 Sum_probs=76.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
.|+||||.+.+...|+.|+..|..|| .|+++.+.+|+.|++++|||||+|.-.+.|+.|++.|||.+++||.|+|...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFG--PIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFG--PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCC--CcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 58999999999999999999999999 9999999999999999999999999999999999999999999999999855
Q ss_pred CC
Q psy8001 150 TR 151 (172)
Q Consensus 150 ~~ 151 (172)
..
T Consensus 191 sN 192 (544)
T KOG0124|consen 191 SN 192 (544)
T ss_pred CC
Confidence 43
No 45
>KOG0127|consensus
Probab=99.46 E-value=2.3e-13 Score=111.80 Aligned_cols=83 Identities=16% Similarity=0.314 Sum_probs=76.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
.....|.|+||||.+...+|+.+|+.|| .+..|.|.+.+ .|+.+|||||.|....+|+.||+.|||.+|+||.|-|.
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G--~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVD 191 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFG--KVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVD 191 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcc--eEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEe
Confidence 3478999999999999999999999999 99999999776 56666999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy8001 148 YPTRNV 153 (172)
Q Consensus 148 ~a~~~~ 153 (172)
||-++.
T Consensus 192 WAV~Kd 197 (678)
T KOG0127|consen 192 WAVDKD 197 (678)
T ss_pred eecccc
Confidence 998754
No 46
>KOG0131|consensus
Probab=99.43 E-value=2.5e-13 Score=97.76 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=78.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...+.++||+||.+.++|..|.+.|+.||+ -+..-+++++..||..+||||+.|.+.+.+.+|++.|||..+++++|.|
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~-l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGV-LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccc-cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 345589999999999999999999999994 3555689999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
+++..+.
T Consensus 172 ~ya~k~~ 178 (203)
T KOG0131|consen 172 SYAFKKD 178 (203)
T ss_pred EEEEecC
Confidence 9998644
No 47
>KOG0114|consensus
Probab=99.43 E-value=8.4e-13 Score=86.86 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
..+..|||.|||+.++.+++.++|.+|| .|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|..++++.|.|-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg--~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYG--TIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhccc--ceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 4456899999999999999999999999 89999987654 458999999999999999999999999999999998
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
+-.+
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 8765
No 48
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=8.9e-13 Score=82.56 Aligned_cols=62 Identities=13% Similarity=0.250 Sum_probs=55.5
Q ss_pred HHHHHHHHH----hcCCCCeEEEE-EEecCCC--CCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 84 EADMSDAIR----SIGVPDFIDVK-FFENASN--GQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 84 ~~~l~~~f~----~~g~~~~~~~~-i~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
+++|+++|. .|| .+..+. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG--~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFG--EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcC--CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568888888 999 899885 7777766 8899999999999999999999999999999999863
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.41 E-value=1.2e-12 Score=109.96 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=68.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHC--CCceeCCcccEEe
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL--PTLELHGRKPMVA 147 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l--~g~~l~g~~l~v~ 147 (172)
...|||+|||+.+++++|+++|++|| .|..+.++.+ +|||||+|.+.++|++|++.| ++..|.|+.|.|.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG--~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~ 73 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFG--PVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFN 73 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEE
Confidence 35899999999999999999999999 8999998753 579999999999999999864 7889999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
++..+
T Consensus 74 ~s~~~ 78 (481)
T TIGR01649 74 YSTSQ 78 (481)
T ss_pred ecCCc
Confidence 99754
No 50
>KOG0105|consensus
Probab=99.39 E-value=8.6e-13 Score=95.34 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||||||..+.+.+|.++|.+|| .|..|.+-. ......||||+|.+.-+|+.||..-+|..++|.+|+|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg--~i~~ieLK~---r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYG--RIREIELKN---RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhc--ceEEEEecc---CCCCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 3467999999999999999999999999 888877522 23346799999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
++...
T Consensus 79 fprgg 83 (241)
T KOG0105|consen 79 FPRGG 83 (241)
T ss_pred eccCC
Confidence 99753
No 51
>KOG0144|consensus
Probab=99.39 E-value=5.2e-13 Score=107.06 Aligned_cols=82 Identities=20% Similarity=0.356 Sum_probs=74.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc-eeCC--cccE
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL-ELHG--RKPM 145 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~-~l~g--~~l~ 145 (172)
...+||||-|+..++|.+++.+|++|| .|+.|.|++|. .+.++|||||.|.+.+.|..||+.|||. .+.| ..|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG--~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFG--HIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhC--ccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 367899999999999999999999999 89999999998 7899999999999999999999999999 4444 7899
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|+||..+.
T Consensus 200 VkFADtqk 207 (510)
T KOG0144|consen 200 VKFADTQK 207 (510)
T ss_pred EEecccCC
Confidence 99998654
No 52
>KOG0127|consensus
Probab=99.38 E-value=2.5e-12 Score=105.88 Aligned_cols=87 Identities=20% Similarity=0.284 Sum_probs=78.6
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHC-----CC-c
Q psy8001 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL-----PT-L 137 (172)
Q Consensus 64 ~~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l-----~g-~ 137 (172)
....+.+.+|||+|||+++++++|.++|++|| .+..+.|+.++.|+.++|.|||.|.+..++..||... .| .
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ 363 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFG--EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV 363 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhc--cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE
Confidence 34566778999999999999999999999999 9999999999999999999999999999999999865 23 5
Q ss_pred eeCCcccEEeccCCC
Q psy8001 138 ELHGRKPMVAYPTRN 152 (172)
Q Consensus 138 ~l~g~~l~v~~a~~~ 152 (172)
.|+||.|+|..|-.+
T Consensus 364 ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 364 LLDGRLLKVTLAVTR 378 (678)
T ss_pred EEeccEEeeeeccch
Confidence 789999999988753
No 53
>KOG0147|consensus
Probab=99.38 E-value=5.1e-13 Score=109.76 Aligned_cols=77 Identities=32% Similarity=0.488 Sum_probs=73.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
.||||||++++++++|+.+|..|| .|..|.+..|..||.++||+|++|.+.++|..|++.|||.+|.|+.|+|..-.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg--~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFG--KIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcc--cceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 399999999999999999999999 99999999999999999999999999999999999999999999999987654
No 54
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=2.5e-12 Score=76.91 Aligned_cols=56 Identities=25% Similarity=0.477 Sum_probs=50.5
Q ss_pred HHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 87 MSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 87 l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
|+++|++|| .|..+.+..++ +++|||+|.+.++|..|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG--~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFG--EVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS---EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcc--cEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999 99999886643 689999999999999999999999999999999986
No 55
>KOG4849|consensus
Probab=99.35 E-value=2.5e-12 Score=100.93 Aligned_cols=160 Identities=31% Similarity=0.451 Sum_probs=121.4
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCC-CCCCCCCCCCcceEEEcCC
Q psy8001 3 LYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFP---EHTGRSPARYRHHRYS-HHHSQATSSSHCNLYVGNL 78 (172)
Q Consensus 3 ~~~d~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~V~nL 78 (172)
||.|+-.-+.|++++.....+++.++..++ +++...++.. ...+++......+... ...........+++|||||
T Consensus 10 l~~~~~q~~~~~~E~~~~D~~eL~ee~I~~-~~~~~~~~~~~e~~~~~P~~~~~~~~~~~~~~~~~s~~Grk~~~YvGNL 88 (498)
T KOG4849|consen 10 LGDGNEQHDGPIDENALLDGKELKEEDIDD-YDEAIAPTNSTESAKVSPTITTVTAPTAIGAKPATSSEGRKYCCYVGNL 88 (498)
T ss_pred hcCCcccccCchhhhccccchhhhhcccCc-hhhcCCCCCccchhhcCCCcccccccccccCCccccccCceEEEEecce
Confidence 677788888899999988888888765554 5555423321 1122222222222221 1223344567789999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccCCCCcchhh
Q psy8001 79 TWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFE 158 (172)
Q Consensus 79 ~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~~~~~~~~~ 158 (172)
-|++|+++|.+.+...|+..+..+++..++.+|++||||+|...+..+.++.++.|--..|+|+.-.|--.+..+.++|+
T Consensus 89 ~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~NK~~~ak~E 168 (498)
T KOG4849|consen 89 LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYNKTNQAKLE 168 (498)
T ss_pred eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccchhhHHHHH
Confidence 99999999999999999657888999999999999999999999999999999999999999998888777777888887
Q ss_pred hcCcc
Q psy8001 159 AQNPL 163 (172)
Q Consensus 159 ~~~~~ 163 (172)
...++
T Consensus 169 ~~~~K 173 (498)
T KOG4849|consen 169 DAQAK 173 (498)
T ss_pred HHHhh
Confidence 66555
No 56
>KOG4661|consensus
Probab=99.34 E-value=1.2e-11 Score=102.47 Aligned_cols=86 Identities=24% Similarity=0.309 Sum_probs=79.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...+.+|||++|...+...+|+.+|++|| .|...+|+.+-.+...++|+||++.+.++|.+||+.||.++|+|+.|.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyG--KVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYG--KVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhc--ceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 45578999999999999999999999999 9999999998777778899999999999999999999999999999999
Q ss_pred eccCCCCc
Q psy8001 147 AYPTRNVL 154 (172)
Q Consensus 147 ~~a~~~~~ 154 (172)
+.++..+.
T Consensus 480 EkaKNEp~ 487 (940)
T KOG4661|consen 480 EKAKNEPG 487 (940)
T ss_pred eecccCcc
Confidence 99986443
No 57
>KOG0109|consensus
Probab=99.34 E-value=1.9e-12 Score=99.36 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=68.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
..|||||||..+++.+|+.+|++|| +|.+|.|+.+ ||||..++...++.||+-|||..|+|..|+|+-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~yg--kVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYG--KVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhC--ceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 4799999999999999999999999 9999999764 99999999999999999999999999999999998
Q ss_pred CCC
Q psy8001 151 RNV 153 (172)
Q Consensus 151 ~~~ 153 (172)
.++
T Consensus 73 sKs 75 (346)
T KOG0109|consen 73 SKS 75 (346)
T ss_pred ccC
Confidence 763
No 58
>KOG0117|consensus
Probab=99.33 E-value=3.2e-12 Score=102.92 Aligned_cols=74 Identities=24% Similarity=0.202 Sum_probs=69.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
..|||.||+..+|++.|+++|.+|| .+.+|+.++| ||||.|.+.++|.+|++.+||..|+|..|.|.+||
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G--~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFG--KVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhcc--ceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4699999999999999999999999 9999988755 99999999999999999999999999999999999
Q ss_pred CCCc
Q psy8001 151 RNVL 154 (172)
Q Consensus 151 ~~~~ 154 (172)
+...
T Consensus 330 P~~k 333 (506)
T KOG0117|consen 330 PVDK 333 (506)
T ss_pred Chhh
Confidence 8643
No 59
>KOG4208|consensus
Probab=99.31 E-value=8.6e-12 Score=91.47 Aligned_cols=83 Identities=19% Similarity=0.246 Sum_probs=75.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhc-CCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSI-GVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~-g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....-+||..+|....+.++..+|.++ | .+..+++-+++.||.++|||||+|.+.+.|+.|-+.||+..|.|+.|.|
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g--~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGG--TVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCC--eeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 344579999999999999999999988 5 6778888899999999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887764
No 60
>KOG0415|consensus
Probab=99.30 E-value=5.2e-12 Score=99.32 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=79.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
.++...|||..|++.++.++|.-+|+.|| .|.+|.|++|+.||.+..||||+|.+.+++++|...|++..|+.++|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG--~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFG--KIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcc--cceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 45567899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q psy8001 147 AYPTR 151 (172)
Q Consensus 147 ~~a~~ 151 (172)
.++..
T Consensus 314 DFSQS 318 (479)
T KOG0415|consen 314 DFSQS 318 (479)
T ss_pred ehhhh
Confidence 99875
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.25 E-value=7.9e-11 Score=99.45 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCC----------CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCC
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGV----------PDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPT 136 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~----------~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g 136 (172)
.....+|||||||+.+++++|+++|..++. ..|..+. .+..+|||||+|.+.++|..||. |+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 445678999999999999999999997620 0223333 24467999999999999999995 999
Q ss_pred ceeCCcccEEeccC
Q psy8001 137 LELHGRKPMVAYPT 150 (172)
Q Consensus 137 ~~l~g~~l~v~~a~ 150 (172)
..|.|+.|+|....
T Consensus 245 ~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 245 IIYSNVFLKIRRPH 258 (509)
T ss_pred eEeeCceeEecCcc
Confidence 99999999997654
No 62
>KOG4206|consensus
Probab=99.24 E-value=5.1e-11 Score=88.61 Aligned_cols=77 Identities=18% Similarity=0.362 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCCHHHHHH----HHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 71 CNLYVGNLTWWTTEADMSD----AIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~----~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
.+|||.||+..+..++|+. +|++|| .+..|.... +.+.+|-|||.|.+.+.|-.|++.|+|..+.|+.+++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG--~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFG--KILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhC--CeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 3999999999999999988 999999 888877654 7789999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.||+..
T Consensus 85 qyA~s~ 90 (221)
T KOG4206|consen 85 QYAKSD 90 (221)
T ss_pred ecccCc
Confidence 999864
No 63
>KOG4212|consensus
Probab=99.23 E-value=3.8e-11 Score=96.80 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=76.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHH-hcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIR-SIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~-~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
..+||.|||+++.+.+|+++|. +.| .|..|.++.|. +|+.+|+|.|+|++++.+++|++.||-+.+.||.|.|+..
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvG--ev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVG--EVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcC--ceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3599999999999999999997 678 89999999998 9999999999999999999999999999999999999988
Q ss_pred CCCCcchh
Q psy8001 150 TRNVLYQF 157 (172)
Q Consensus 150 ~~~~~~~~ 157 (172)
......+.
T Consensus 122 ~d~q~~~~ 129 (608)
T KOG4212|consen 122 HDEQRDQY 129 (608)
T ss_pred Cchhhhhh
Confidence 65444443
No 64
>KOG0123|consensus
Probab=99.19 E-value=8.1e-11 Score=95.54 Aligned_cols=74 Identities=30% Similarity=0.466 Sum_probs=70.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccCC
Q psy8001 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTR 151 (172)
Q Consensus 73 v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~~ 151 (172)
|||-||+..++..+|.++|+.|| .|.+|++..+. +| ++|| ||+|.+.++|.+||..|||..+.|++|.|....+
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g--~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFG--NILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhc--CeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 99999999999999999999999 99999999987 55 8999 9999999999999999999999999999987765
No 65
>KOG0116|consensus
Probab=99.17 E-value=2.6e-10 Score=93.34 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
...|||.|||.+++.++|+++|..|| .|....|......++..+||||+|.+.++++.||++ +-..|++++|.|+..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG--~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFG--PIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcc--cccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 44599999999999999999999999 888887766543455558999999999999999996 678999999999988
Q ss_pred CCCC
Q psy8001 150 TRNV 153 (172)
Q Consensus 150 ~~~~ 153 (172)
+...
T Consensus 365 ~~~~ 368 (419)
T KOG0116|consen 365 RPGF 368 (419)
T ss_pred cccc
Confidence 8644
No 66
>KOG0110|consensus
Probab=99.13 E-value=5e-11 Score=100.74 Aligned_cols=83 Identities=16% Similarity=0.318 Sum_probs=76.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
++.|+|.|||+.++-.+++.+|..|| .+..|+|......+.++|||||+|-+..+|..|+..|.++.|.||+|.++||
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFG--qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFG--QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhccc--ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 67899999999999999999999999 8999998876556778999999999999999999999999999999999999
Q ss_pred CCCCc
Q psy8001 150 TRNVL 154 (172)
Q Consensus 150 ~~~~~ 154 (172)
+..+.
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 97554
No 67
>KOG0153|consensus
Probab=99.13 E-value=2.3e-10 Score=89.80 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=70.9
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH-HCCCceeCC
Q psy8001 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME-RLPTLELHG 141 (172)
Q Consensus 63 ~~~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~-~l~g~~l~g 141 (172)
.++.+..-.+|||++|...++|.+|+++|.+|| .+.++.++.. +++|||+|.+.++|+.|.+ .+|-..|+|
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyG--eirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYG--EIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcC--CeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecc
Confidence 345566677999999999999999999999999 8999988653 4699999999999988876 566668899
Q ss_pred cccEEeccCCCC
Q psy8001 142 RKPMVAYPTRNV 153 (172)
Q Consensus 142 ~~l~v~~a~~~~ 153 (172)
++|+|.|.++..
T Consensus 293 ~Rl~i~Wg~~~~ 304 (377)
T KOG0153|consen 293 FRLKIKWGRPKQ 304 (377)
T ss_pred eEEEEEeCCCcc
Confidence 999999998733
No 68
>KOG0123|consensus
Probab=99.12 E-value=2e-10 Score=93.25 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=70.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
..|||| +.+++..|.++|+..| .+.++++++|- | +.|||||.|.+.++|++||+.||...+.|+.|++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~--~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAG--PVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccC--CceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 468999 8999999999999999 99999999998 6 99999999999999999999999999999999999997
Q ss_pred CCC
Q psy8001 151 RNV 153 (172)
Q Consensus 151 ~~~ 153 (172)
+..
T Consensus 74 rd~ 76 (369)
T KOG0123|consen 74 RDP 76 (369)
T ss_pred cCC
Confidence 643
No 69
>KOG4205|consensus
Probab=99.11 E-value=7.4e-11 Score=93.21 Aligned_cols=82 Identities=27% Similarity=0.475 Sum_probs=75.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++||||+|+|.++++.|+..|.+|| .+..+.+++|+.+++++||+||+|.+.+...++|. ..-+.|+|+.|.+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~G--ev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFG--EVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccC--ceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCcccccee
Confidence 568999999999999999999999999 89999999999999999999999999999988887 466789999999998
Q ss_pred cCCCC
Q psy8001 149 PTRNV 153 (172)
Q Consensus 149 a~~~~ 153 (172)
|.++-
T Consensus 82 av~r~ 86 (311)
T KOG4205|consen 82 AVSRE 86 (311)
T ss_pred ccCcc
Confidence 87643
No 70
>KOG4212|consensus
Probab=99.11 E-value=1.5e-10 Score=93.41 Aligned_cols=76 Identities=29% Similarity=0.396 Sum_probs=68.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....|+|||.|||+.+|+..|++-|..|| .+....|+. +|+++| .|.|.++++|++|+..|+|..|.||.|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G--~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V 605 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIG--HVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKV 605 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhcc--ceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeee
Confidence 44568999999999999999999999999 888888844 577777 89999999999999999999999999999
Q ss_pred ecc
Q psy8001 147 AYP 149 (172)
Q Consensus 147 ~~a 149 (172)
.+.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 863
No 71
>KOG1548|consensus
Probab=99.08 E-value=1.1e-09 Score=85.90 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=76.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeE--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCce
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFI--------DVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLE 138 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~--------~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~ 138 (172)
...+..|||+|||..+|.+++.++|++|| -|. .|++.++. .|..+|-|++.|...++.+.|++.|++..
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcG--iI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCG--IIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcc--eEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccc
Confidence 34567899999999999999999999999 342 48898888 59999999999999999999999999999
Q ss_pred eCCcccEEeccCCCCcch
Q psy8001 139 LHGRKPMVAYPTRNVLYQ 156 (172)
Q Consensus 139 l~g~~l~v~~a~~~~~~~ 156 (172)
|.|++|+|+.|+-+....
T Consensus 208 ~rg~~~rVerAkfq~Kge 225 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQMKGE 225 (382)
T ss_pred ccCcEEEEehhhhhhccC
Confidence 999999999998544333
No 72
>KOG0146|consensus
Probab=99.08 E-value=2.6e-10 Score=86.90 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCce-eCC--ccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLE-LHG--RKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~-l~g--~~l 144 (172)
.+..+||||.|...-.|+|++.+|..|| .+.++.+.+.. .|.+||++||.|.+..+|+.||..|||.. +-| ..|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG--~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFG--NIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccC--CcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 3567899999999999999999999999 89999999987 78899999999999999999999999984 444 578
Q ss_pred EEeccCC
Q psy8001 145 MVAYPTR 151 (172)
Q Consensus 145 ~v~~a~~ 151 (172)
.|+++.-
T Consensus 94 VVK~ADT 100 (371)
T KOG0146|consen 94 VVKFADT 100 (371)
T ss_pred EEEeccc
Confidence 9998864
No 73
>KOG0226|consensus
Probab=99.07 E-value=1.6e-10 Score=87.32 Aligned_cols=83 Identities=14% Similarity=0.238 Sum_probs=77.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++||+|.|.-.++++-|-..|.+|- .....++++|+.+|+++||+||.|.+..++-+|+..|+|.-++.+.|++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfp--sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFP--SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhcc--chhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 35678999999999999999999999999 8999999999999999999999999999999999999999999999988
Q ss_pred eccCC
Q psy8001 147 AYPTR 151 (172)
Q Consensus 147 ~~a~~ 151 (172)
+.+.-
T Consensus 265 RkS~w 269 (290)
T KOG0226|consen 265 RKSEW 269 (290)
T ss_pred hhhhH
Confidence 76543
No 74
>KOG0109|consensus
Probab=99.06 E-value=2.2e-10 Score=88.11 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=69.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|+||||.+.++..||+..|.+|| .+.+++|+. +|+||.|.-.++|..||+.|++.+++|++|+|
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~yg--pviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYG--PVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccC--Cceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeee
Confidence 34567899999999999999999999999 899999865 49999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
..+..+
T Consensus 145 q~stsr 150 (346)
T KOG0109|consen 145 QLSTSR 150 (346)
T ss_pred eeeccc
Confidence 988753
No 75
>KOG0110|consensus
Probab=99.04 E-value=6.8e-10 Score=93.99 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=68.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNG---QSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g---~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
.|||.||++.++.++|...|...| .+..+.|...+... .+.|||||+|.+.++|..|++.|+|+.|+|+.|.|++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G--~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQG--TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcC--eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 399999999999999999999999 88888777655221 2459999999999999999999999999999999999
Q ss_pred cC
Q psy8001 149 PT 150 (172)
Q Consensus 149 a~ 150 (172)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 97
No 76
>KOG0124|consensus
Probab=99.03 E-value=7.6e-10 Score=87.68 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=76.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
.-++|||..++++.+|++|+..|..|| .|.+|.+-++...+.++||+|++|.+..+...||..||=..|+|..|+|-.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 346899999999999999999999999 999999999998888999999999999999999999999999999999987
Q ss_pred cCC
Q psy8001 149 PTR 151 (172)
Q Consensus 149 a~~ 151 (172)
+-.
T Consensus 287 ~vT 289 (544)
T KOG0124|consen 287 CVT 289 (544)
T ss_pred ccC
Confidence 764
No 77
>KOG0533|consensus
Probab=99.03 E-value=1.4e-09 Score=83.05 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=75.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
.....|+|.||++.+.+++|+++|..|| .+..+.+.+++ +|.+.|.|-|.|...++|++|++.|||..++|+.|++.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~--~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFG--ELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhc--cceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3347899999999999999999999999 78888888888 89999999999999999999999999999999999988
Q ss_pred ccCCCC
Q psy8001 148 YPTRNV 153 (172)
Q Consensus 148 ~a~~~~ 153 (172)
.....+
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 776544
No 78
>KOG0132|consensus
Probab=99.01 E-value=8e-10 Score=94.39 Aligned_cols=74 Identities=14% Similarity=0.346 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
.++||||.|+..+++.+|.++|..|| .|.+|.++- ++|||||.+....+|++|+..|+...+.++.|+|.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefG--eiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFG--EIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcc--cceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 36899999999999999999999999 899998765 4689999999999999999999999999999999999
Q ss_pred CC
Q psy8001 150 TR 151 (172)
Q Consensus 150 ~~ 151 (172)
..
T Consensus 493 ~g 494 (894)
T KOG0132|consen 493 VG 494 (894)
T ss_pred cc
Confidence 75
No 79
>KOG4209|consensus
Probab=98.94 E-value=1.2e-09 Score=83.41 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
.+...+||||+.+.++.+++..+|..|| .+..+.|..|+.+|..+||+||+|.+.+.++.++. |+|..|.|+.+.|.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg--~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCG--GINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccC--CccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3445899999999999999999999999 89999999999999999999999999999999999 99999999999998
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
+.+-
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 8763
No 80
>KOG4205|consensus
Probab=98.90 E-value=2.1e-09 Score=85.04 Aligned_cols=86 Identities=27% Similarity=0.343 Sum_probs=78.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
....||||+|+..+++.+++++|.++| .+..+-++.|..+.+.+||+||.|.+.+++++++. ..-+.|.|+.+.|..
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKR 172 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEee
Confidence 456899999999999999999999999 89999999999999999999999999999999987 588899999999999
Q ss_pred cCCCCcchh
Q psy8001 149 PTRNVLYQF 157 (172)
Q Consensus 149 a~~~~~~~~ 157 (172)
|-++...+.
T Consensus 173 A~pk~~~~~ 181 (311)
T KOG4205|consen 173 AIPKEVMQS 181 (311)
T ss_pred ccchhhccc
Confidence 988655544
No 81
>KOG1457|consensus
Probab=98.87 E-value=5.8e-08 Score=72.47 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEe-cCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC---Ccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE-NASNGQSKGFCTVTLGSEESMSLVMERLPTLELH---GRK 143 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~-~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~---g~~ 143 (172)
+.-.+|||++||.++...+|..+|..|. .-+.+.+-+ ++....++-+||++|.+..+|.+|+..|||..++ +..
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~--GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFH--GYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCC--CccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3456999999999999999999999886 555554433 2222234579999999999999999999999887 578
Q ss_pred cEEeccCCC
Q psy8001 144 PMVAYPTRN 152 (172)
Q Consensus 144 l~v~~a~~~ 152 (172)
|++++|+..
T Consensus 110 LhiElAKSN 118 (284)
T KOG1457|consen 110 LHIELAKSN 118 (284)
T ss_pred eEeeehhcC
Confidence 999999864
No 82
>KOG0151|consensus
Probab=98.81 E-value=2.5e-08 Score=84.76 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=73.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASN---GQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~---g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
.+.+++|||+||++.++++.|...|..|| .+..++|++-+.. ...+.++||.|-+..++++|++.|+|..+.++.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfg--PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFG--PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccC--cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 45578899999999999999999999999 8999999885522 234569999999999999999999999999999
Q ss_pred cEEeccCC
Q psy8001 144 PMVAYPTR 151 (172)
Q Consensus 144 l~v~~a~~ 151 (172)
+++-|.+.
T Consensus 249 ~K~gWgk~ 256 (877)
T KOG0151|consen 249 MKLGWGKA 256 (877)
T ss_pred eeeccccc
Confidence 99999975
No 83
>KOG0106|consensus
Probab=98.80 E-value=6.3e-09 Score=77.94 Aligned_cols=72 Identities=21% Similarity=0.355 Sum_probs=65.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
..||||+|++.+.+.+|..+|..|| .+..+.+ ..||+||+|.+..+|+.|+..||+..|+|-++.|++++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg--~~~d~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYG--KIPDADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcc--cccccee--------ecccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 4699999999999999999999999 7777765 35799999999999999999999999999889999998
Q ss_pred CC
Q psy8001 151 RN 152 (172)
Q Consensus 151 ~~ 152 (172)
..
T Consensus 72 ~~ 73 (216)
T KOG0106|consen 72 GK 73 (216)
T ss_pred cc
Confidence 53
No 84
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.80 E-value=6.2e-08 Score=64.06 Aligned_cols=80 Identities=10% Similarity=0.078 Sum_probs=68.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhc--CCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC----Ccc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSI--GVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH----GRK 143 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~--g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~----g~~ 143 (172)
+++|.|.|+|-..+.++|.+.+... | ....+.+..|-.++-+.|||||.|.+.+.+..-.+.++|..+. .+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g--~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKG--KYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccC--cceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 3689999999999999999998753 4 5677888888888889999999999999999999999999775 345
Q ss_pred cEEeccCC
Q psy8001 144 PMVAYPTR 151 (172)
Q Consensus 144 l~v~~a~~ 151 (172)
..|.+|+-
T Consensus 79 c~i~yAri 86 (97)
T PF04059_consen 79 CEISYARI 86 (97)
T ss_pred EEEehhHh
Confidence 67777753
No 85
>KOG4211|consensus
Probab=98.77 E-value=3.6e-08 Score=80.73 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
......-|-+.+|||++|++||+++|+.++ |..+.+.+. +|+..|-|||+|.+.++++.|++ .+...+..|-|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~---I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIE 79 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG---IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIE 79 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc---eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEE
Confidence 344556788999999999999999999999 677655544 89999999999999999999999 488899999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|..+...
T Consensus 80 Vf~~~~~ 86 (510)
T KOG4211|consen 80 VFTAGGA 86 (510)
T ss_pred EEccCCc
Confidence 9988654
No 86
>KOG4454|consensus
Probab=98.74 E-value=6.7e-09 Score=77.14 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=74.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
...+|||+|+...++|+-|.++|-+-| .|.++.|..++ .++.+ ||||.|.++.+..-|++.+||..+.++.+.+.+
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaG--PV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAG--PVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccC--ceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 346899999999999999999999999 89999988777 56666 999999999999999999999999999999987
Q ss_pred cCCCCcchh
Q psy8001 149 PTRNVLYQF 157 (172)
Q Consensus 149 a~~~~~~~~ 157 (172)
-...+..+.
T Consensus 84 r~G~shapl 92 (267)
T KOG4454|consen 84 RCGNSHAPL 92 (267)
T ss_pred ccCCCcchh
Confidence 766544443
No 87
>KOG4660|consensus
Probab=98.72 E-value=1.4e-08 Score=84.20 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=65.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....+|+|-|||..+++++|+.+|+.|| .|..|+. +...+|.+||+|.+.-+|++|++.|++.+|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yG--eir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYG--EIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhc--chhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 45567999999999999999999999999 8888655 445689999999999999999999999999999988
No 88
>KOG0120|consensus
Probab=98.56 E-value=7.4e-08 Score=80.21 Aligned_cols=84 Identities=20% Similarity=0.371 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
......+||++||...++..+++++..|| .+....++.|..+|.++||||.+|.+..-...|+..|||..+++++|.|
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg--~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFG--PLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcc--cchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 34567899999999999999999999999 9999999999989999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
..|...
T Consensus 364 q~A~~g 369 (500)
T KOG0120|consen 364 QRAIVG 369 (500)
T ss_pred ehhhcc
Confidence 988753
No 89
>KOG1190|consensus
Probab=98.54 E-value=4.7e-07 Score=72.91 Aligned_cols=79 Identities=24% Similarity=0.244 Sum_probs=71.3
Q ss_pred cceEEEcCCC-CCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 70 HCNLYVGNLT-WWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 70 ~~~v~V~nL~-~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
++.|-|.||. ..+|.+-|..+|+-|| +|.+|+|++++ +--|+|.+.+...|+.|+..|+|..|.|++|+|.+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYG--dVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYG--DVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhc--ceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 6788999987 5789999999999999 99999999975 35799999999999999999999999999999999
Q ss_pred cCCCCcc
Q psy8001 149 PTRNVLY 155 (172)
Q Consensus 149 a~~~~~~ 155 (172)
++..+..
T Consensus 370 SKH~~vq 376 (492)
T KOG1190|consen 370 SKHTNVQ 376 (492)
T ss_pred ccCcccc
Confidence 9975543
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.46 E-value=1.3e-06 Score=55.73 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=46.6
Q ss_pred ceEEEcCCCCCCCHHHHH----HHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 71 CNLYVGNLTWWTTEADMS----DAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~----~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
.-|+|.|||...+...++ +++.-+|= .+..| ..+-|+|-|.+.+.|++|.+.|+|..+.|++|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-kVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-KVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC-EEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 368999999998877655 55556661 33333 2468999999999999999999999999999999
Q ss_pred eccC
Q psy8001 147 AYPT 150 (172)
Q Consensus 147 ~~a~ 150 (172)
++..
T Consensus 72 ~~~~ 75 (90)
T PF11608_consen 72 SFSP 75 (90)
T ss_dssp ESS-
T ss_pred EEcC
Confidence 9985
No 91
>KOG4211|consensus
Probab=98.44 E-value=9.8e-07 Score=72.49 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
.....|-+++||+.+++++|.+||+.+-++.. .+.++.+. .++..|-|||.|.+.+.|+.||.. |...|+.|-|.|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCccccc-ceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 35568999999999999999999998883222 45566666 677899999999999999999996 8889999999999
Q ss_pred ccCCCCcchh
Q psy8001 148 YPTRNVLYQF 157 (172)
Q Consensus 148 ~a~~~~~~~~ 157 (172)
.+.......+
T Consensus 178 ~Ss~~e~~~~ 187 (510)
T KOG4211|consen 178 RSSRAEVKRA 187 (510)
T ss_pred hhHHHHHHhh
Confidence 8875443333
No 92
>KOG1995|consensus
Probab=98.36 E-value=6.4e-07 Score=70.99 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=77.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeE--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFI--------DVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~--------~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
......+|||-+|+..+++.+|.++|.++| .|. .|+|..|+.|+..||-|.|+|.+...|+.||..+++.
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg--~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCG--VIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcc--eeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 355667899999999999999999999999 442 3778889999999999999999999999999999999
Q ss_pred eeCCcccEEeccCCCC
Q psy8001 138 ELHGRKPMVAYPTRNV 153 (172)
Q Consensus 138 ~l~g~~l~v~~a~~~~ 153 (172)
.++|..|+|..|...+
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999999987654
No 93
>KOG1456|consensus
Probab=98.21 E-value=9.2e-05 Score=59.42 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=72.8
Q ss_pred CCCCCCcceEEEcCCCC-CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 64 QATSSSHCNLYVGNLTW-WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 64 ~~~~~~~~~v~V~nL~~-~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
+.....++.++|.+|.. .++.+.|..+|..|| +|.+|++++.+ .|-|.|++.+..+.++|+..||+..+-|.
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~ 353 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGG 353 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccc
Confidence 34556788999999985 566788999999999 99999999865 57899999999999999999999999999
Q ss_pred ccEEeccCCC
Q psy8001 143 KPMVAYPTRN 152 (172)
Q Consensus 143 ~l~v~~a~~~ 152 (172)
+|.|..++..
T Consensus 354 kl~v~~SkQ~ 363 (494)
T KOG1456|consen 354 KLNVCVSKQN 363 (494)
T ss_pred eEEEeecccc
Confidence 9999999863
No 94
>KOG1457|consensus
Probab=98.08 E-value=4.3e-06 Score=62.62 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=54.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH 140 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~ 140 (172)
....+|||.||...++|++|+++|+.|. ....++|. .+ +| -..||++|.+.+.|..|+..|+|..|.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~--gf~~l~~~-~~-~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYP--GFHILKIR-AR-GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCC--CceEEEEe-cC-CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 3456799999999999999999999998 66666652 22 22 348999999999999999999988663
No 95
>KOG0106|consensus
Probab=98.08 E-value=3.8e-06 Score=63.12 Aligned_cols=75 Identities=27% Similarity=0.387 Sum_probs=64.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
.+....+.+.|-|+.-.+.+.+|.++|..+| .+....+ ..+++||+|.+.+++..|+..|+|..+.|+.|
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g--~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l 163 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG--EVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRI 163 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccC--CCchhhh--------hccccceeehhhhhhhhcchhccchhhcCcee
Confidence 4455678999999999999999999999999 5533222 45799999999999999999999999999999
Q ss_pred EEecc
Q psy8001 145 MVAYP 149 (172)
Q Consensus 145 ~v~~a 149 (172)
.+...
T Consensus 164 ~~~~~ 168 (216)
T KOG0106|consen 164 SVEKN 168 (216)
T ss_pred eeccc
Confidence 99544
No 96
>KOG0147|consensus
Probab=98.08 E-value=1.4e-06 Score=72.38 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=74.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
+.....+||+--|....+..+|.++|+..| .|..|.++.|+.++.++|-|||+|.+.+....||. |.|..+.|..|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~g--kVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVG--KVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhc--CcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeE
Confidence 344567888888888999999999999999 99999999999999999999999999999999995 899999999999
Q ss_pred EeccC
Q psy8001 146 VAYPT 150 (172)
Q Consensus 146 v~~a~ 150 (172)
|....
T Consensus 252 vq~sE 256 (549)
T KOG0147|consen 252 VQLSE 256 (549)
T ss_pred ecccH
Confidence 98664
No 97
>KOG4210|consensus
Probab=98.04 E-value=3.1e-06 Score=66.66 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=73.4
Q ss_pred cceEE-EcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 70 HCNLY-VGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 70 ~~~v~-V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++| |+||++.+++++|+.+|..+| .+..+++..+..++..+||+|+.|........++.. +...+.++.+.+.+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~--~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSG--EITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred cccceeecccccccchHHHhhhccCcC--cceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 34555 999999999999999999999 899999999999999999999999999999999886 88899999999999
Q ss_pred cCCCC
Q psy8001 149 PTRNV 153 (172)
Q Consensus 149 a~~~~ 153 (172)
..+..
T Consensus 261 ~~~~~ 265 (285)
T KOG4210|consen 261 DEPRP 265 (285)
T ss_pred CCCCc
Confidence 88754
No 98
>KOG4206|consensus
Probab=97.98 E-value=4.3e-05 Score=57.26 Aligned_cols=78 Identities=13% Similarity=0.240 Sum_probs=68.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC-Cccc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH-GRKP 144 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~-g~~l 144 (172)
..+++..+|+.|||..++.+.+..+|.+|. ...+++++..+ ++.|||+|.+...+..|...|+|..|- ...|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~--g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m 214 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFP--GFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTM 214 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCc--ccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceE
Confidence 355677899999999999999999999999 89999887653 679999999999999999999999887 6778
Q ss_pred EEeccC
Q psy8001 145 MVAYPT 150 (172)
Q Consensus 145 ~v~~a~ 150 (172)
.|.+++
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 887764
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.81 E-value=5.6e-05 Score=59.93 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=60.2
Q ss_pred cceEEEcCCCCCCCHHH----H--HHHHHhcCCCCeEEEEEEecCCCCC-cccE--EEEEeCCHHHHHHHHHHCCCceeC
Q psy8001 70 HCNLYVGNLTWWTTEAD----M--SDAIRSIGVPDFIDVKFFENASNGQ-SKGF--CTVTLGSEESMSLVMERLPTLELH 140 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~----l--~~~f~~~g~~~~~~~~i~~~~~~g~-~~g~--afv~f~~~~~a~~al~~l~g~~l~ 140 (172)
..-+||-+|++.+..++ | .++|.+|| .|..|.|.+.-.... ..+. .|++|.+.++|.+||...+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyG--kI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYG--KIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhcc--ceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34689999998776665 2 47899999 888886644321111 1233 399999999999999999999999
Q ss_pred CcccEEeccC
Q psy8001 141 GRKPMVAYPT 150 (172)
Q Consensus 141 g~~l~v~~a~ 150 (172)
||.|+..+-.
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999987754
No 100
>KOG4307|consensus
Probab=97.73 E-value=0.00013 Score=62.74 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=65.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
+.|-|.|+|+.++-+||.+||..|-+ ...+|.+-++ +.|...|-|-|.|.+.++|.+|...|++..|.+|+|.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~-~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEP-DPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhccccc-CCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 37889999999999999999999983 3445554443 4789999999999999999999999999999999988763
No 101
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.71 E-value=7e-05 Score=50.40 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=43.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc-----eeCCccc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL-----ELHGRKP 144 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~-----~l~g~~l 144 (172)
++.|.|.+++..++-++|++.|+.|| .|..|.+... ---|||-|.+.+.|+.|+..+... .|.+..+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g--~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~ 72 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFG--EVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEV 72 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcC--CcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceE
Confidence 46789999999999999999999999 8999887442 238999999999999998866544 5556555
Q ss_pred EEec
Q psy8001 145 MVAY 148 (172)
Q Consensus 145 ~v~~ 148 (172)
.++.
T Consensus 73 ~~~v 76 (105)
T PF08777_consen 73 TLEV 76 (105)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 5543
No 102
>KOG1365|consensus
Probab=97.66 E-value=0.00015 Score=58.49 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=68.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCC-CCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGV-PDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~-~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
.-+|.+++||+.++.++|-++|..|.. +....|+++.+- .|+..|-|||+|.+.++|.+|....|.+...+|.|.|..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 558999999999999999999998873 023458888875 688889999999999999999998888887899999987
Q ss_pred cCC
Q psy8001 149 PTR 151 (172)
Q Consensus 149 a~~ 151 (172)
+.-
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 754
No 103
>KOG3152|consensus
Probab=97.61 E-value=4.3e-05 Score=58.33 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=61.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCC--------CCccc----EEEEEeCCHHHHHHHHHHCCC
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASN--------GQSKG----FCTVTLGSEESMSLVMERLPT 136 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~--------g~~~g----~afv~f~~~~~a~~al~~l~g 136 (172)
....||+++||+.++..-|+++|+.|| .|-.|.+-....+ |.+++ -|.|+|.+...|.++...||+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yG--eVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn 150 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYG--EVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNN 150 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhcc--ccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCC
Confidence 446899999999999999999999999 7888887665544 33332 267899999999999999999
Q ss_pred ceeCCcc
Q psy8001 137 LELHGRK 143 (172)
Q Consensus 137 ~~l~g~~ 143 (172)
..|+|++
T Consensus 151 ~~Iggkk 157 (278)
T KOG3152|consen 151 TPIGGKK 157 (278)
T ss_pred CccCCCC
Confidence 9999986
No 104
>KOG0105|consensus
Probab=97.58 E-value=0.0004 Score=50.87 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=59.9
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 64 QATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 64 ~~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
++.....+.|.|++||.+.++++|+++..+-| .++...+.+| |++.|+|-..++.+-|++.|+...+..
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 34445678999999999999999999999999 8998888665 488999999999999999999886653
No 105
>KOG2314|consensus
Probab=97.51 E-value=0.00025 Score=59.71 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=63.0
Q ss_pred CCcceEEEcCCCCCCCH------HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC-
Q psy8001 68 SSHCNLYVGNLTWWTTE------ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH- 140 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~------~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~- 140 (172)
.-...|+|-|+|-.-.. .-|..+|+++| .+....+.-+.. |.++||.|++|.+..+|+.|++.|||..|+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g--k~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAG--KIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhc--cccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 34457889999853322 23567899999 888888887774 449999999999999999999999999886
Q ss_pred CcccEEeccC
Q psy8001 141 GRKPMVAYPT 150 (172)
Q Consensus 141 g~~l~v~~a~ 150 (172)
++++.|..-+
T Consensus 133 nHtf~v~~f~ 142 (698)
T KOG2314|consen 133 NHTFFVRLFK 142 (698)
T ss_pred cceEEeehhh
Confidence 5677776543
No 106
>KOG1190|consensus
Probab=97.45 E-value=0.00039 Score=56.49 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=63.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc-ccEE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR-KPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~-~l~v 146 (172)
++..++..+|+|.+++|++++..|...| ...+.... -++.+-++++.+.+.++|-.|+..+|.+.+++. .|+|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g--~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPG--GQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCC--ceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 4566899999999999999999999888 44333222 333456999999999999999999999998765 8999
Q ss_pred eccCC
Q psy8001 147 AYPTR 151 (172)
Q Consensus 147 ~~a~~ 151 (172)
++++.
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 99874
No 107
>KOG1548|consensus
Probab=97.38 E-value=0.00084 Score=53.45 Aligned_cols=85 Identities=13% Similarity=0.256 Sum_probs=64.5
Q ss_pred CCCcceEEEcCCC----CCCC-------HHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCC
Q psy8001 67 SSSHCNLYVGNLT----WWTT-------EADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135 (172)
Q Consensus 67 ~~~~~~v~V~nL~----~~~~-------~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 135 (172)
....++|.+.|+= +..+ .++|++-..+|| .+.+|.|. ++ ...|.+-|.|.+.++|..||+.|+
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G--~v~~vvv~-d~---hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFG--QVRKVVVY-DR---HPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhC--CcceEEEe-cc---CCCceeEEEeCChHHHHHHHHHhc
Confidence 3456788888873 2233 245666778999 78888654 33 256899999999999999999999
Q ss_pred CceeCCcccEEeccCCCCcchh
Q psy8001 136 TLELHGRKPMVAYPTRNVLYQF 157 (172)
Q Consensus 136 g~~l~g~~l~v~~a~~~~~~~~ 157 (172)
|.-++||+|..+........+.
T Consensus 336 GR~fdgRql~A~i~DG~t~~~~ 357 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDGKTKFQT 357 (382)
T ss_pred CeeecceEEEEEEeCCcceeee
Confidence 9999999999988776554443
No 108
>KOG1365|consensus
Probab=97.33 E-value=0.00031 Score=56.63 Aligned_cols=82 Identities=16% Similarity=0.173 Sum_probs=62.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhc-CCC-CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSI-GVP-DFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~-g~~-~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.+.-.|.+++||+++++.++.++|... -+- ....|-++... +|+..|-|||.|..+++|+.||.. |...|+-|.|.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 445567888999999999999999621 100 23455555544 788899999999999999999986 77777777787
Q ss_pred EeccCC
Q psy8001 146 VAYPTR 151 (172)
Q Consensus 146 v~~a~~ 151 (172)
+..+..
T Consensus 237 lFRSTa 242 (508)
T KOG1365|consen 237 LFRSTA 242 (508)
T ss_pred HHHHhH
Confidence 766543
No 109
>KOG1456|consensus
Probab=97.18 E-value=0.0017 Score=52.29 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=64.7
Q ss_pred CCcceEEEc--CCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC--Ccc
Q psy8001 68 SSHCNLYVG--NLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH--GRK 143 (172)
Q Consensus 68 ~~~~~v~V~--nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~--g~~ 143 (172)
..+..|.+. |--+.+|-+-|..+....| ++.+|.|+.. +|. .|.|+|.+.+.|++|...|||..|. .-.
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~G--kVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCT 190 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQG--KVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCT 190 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCC--ceEEEEEEec--cce---eeEEeechhHHHHHHHhhccccccccccee
Confidence 334444444 4446788888999999999 8999987664 555 7999999999999999999999774 369
Q ss_pred cEEeccCCCCcch
Q psy8001 144 PMVAYPTRNVLYQ 156 (172)
Q Consensus 144 l~v~~a~~~~~~~ 156 (172)
|+|++|++..++=
T Consensus 191 LKIeyAkP~rlnV 203 (494)
T KOG1456|consen 191 LKIEYAKPTRLNV 203 (494)
T ss_pred EEEEecCcceeee
Confidence 9999999855443
No 110
>KOG0120|consensus
Probab=97.15 E-value=0.0014 Score=55.13 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCCCeEEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 86 DMSDAIRSIGVPDFIDVKFFENASN---GQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 86 ~l~~~f~~~g~~~~~~~~i~~~~~~---g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
+++.-+++|| .+..|.+.+.-.+ .-..|--||+|.+.+++++|.+.|+|..+.||.|...|-.
T Consensus 425 dvr~ec~k~g--~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFG--AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccC--ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 3455677889 7888888776222 2346789999999999999999999999999999988864
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.13 E-value=0.0019 Score=45.69 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccCC
Q psy8001 86 DMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTR 151 (172)
Q Consensus 86 ~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~~ 151 (172)
+|-+.|..|| .+.=++++. +.-.|+|.+...|.+|+. |+|..++|+.|+|+...+
T Consensus 52 ~ll~~~~~~G--evvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYG--EVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS---ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCC--ceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 5677888899 666556543 356899999999999998 799999999999998765
No 112
>KOG2193|consensus
Probab=97.09 E-value=0.00054 Score=55.98 Aligned_cols=73 Identities=21% Similarity=0.278 Sum_probs=58.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc-eeCCcccEEecc
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL-ELHGRKPMVAYP 149 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~-~l~g~~l~v~~a 149 (172)
..+|++||.+.++.++|..+|...-. ....-.++ ..||+||...+...|.+|++.++|. ++.|+++.|.++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~-~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKI-PGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccC-CCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 36899999999999999999975431 11111122 3589999999999999999999998 899999999887
Q ss_pred CC
Q psy8001 150 TR 151 (172)
Q Consensus 150 ~~ 151 (172)
-+
T Consensus 74 v~ 75 (584)
T KOG2193|consen 74 VP 75 (584)
T ss_pred hh
Confidence 65
No 113
>KOG0129|consensus
Probab=97.04 E-value=0.0024 Score=53.34 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=58.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHH-hcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIR-SIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~-~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~ 133 (172)
.-++..+||||+||.-++.++|-.+|. -|| .|..+.|-.|..-.-.+|=|-|+|.+..+.-+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyG--gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFG--GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcC--ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 345678999999999999999999998 699 899999988865677899999999999999999973
No 114
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.94 E-value=0.0034 Score=36.78 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=40.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al 131 (172)
+.|-|.+.+.... +.+..+|..|| .|..+.+. ....+.++.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fG--eI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFG--EIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcC--CEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 3577888886665 44666999999 88887763 23459999999999999985
No 115
>KOG2416|consensus
Probab=96.88 E-value=0.0045 Score=52.66 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=65.0
Q ss_pred CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee--
Q psy8001 62 HSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL-- 139 (172)
Q Consensus 62 ~~~~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l-- 139 (172)
+.+........|+|.||=.-.|.-.|+.++..-|- .|... + +|+ -+..|||.|.+.++|...+.+|||..+
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg-~Vee~-W-mDk----IKShCyV~yss~eEA~atr~AlhnV~WP~ 508 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGG-NVEEF-W-MDK----IKSHCYVSYSSVEEAAATREALHNVQWPP 508 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccC-chHHH-H-HHH----hhcceeEecccHHHHHHHHHHHhccccCC
Confidence 34555666778999999999999999999995441 44444 2 233 477999999999999999999999965
Q ss_pred -CCcccEEeccCC
Q psy8001 140 -HGRKPMVAYPTR 151 (172)
Q Consensus 140 -~g~~l~v~~a~~ 151 (172)
+++.|.+.|...
T Consensus 509 sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 509 SNPKHLIADFVRA 521 (718)
T ss_pred CCCceeEeeecch
Confidence 567888888875
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.86 E-value=0.0064 Score=40.46 Aligned_cols=77 Identities=9% Similarity=0.025 Sum_probs=51.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEE-EEecC------CCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVK-FFENA------SNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~-i~~~~------~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
.+.|.|-+.|.. ....+-+.|++|| .|.+.. +.++. .......+-.|.|.+..+|.+||.. ||..|.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G--~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFG--TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS---EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcc--eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCc
Confidence 456889999987 4567888999999 776553 11100 0012345899999999999999984 99999885
Q ss_pred -ccEEeccC
Q psy8001 143 -KPMVAYPT 150 (172)
Q Consensus 143 -~l~v~~a~ 150 (172)
.+-|.+++
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 55677764
No 117
>KOG0112|consensus
Probab=96.85 E-value=0.0072 Score=53.66 Aligned_cols=80 Identities=15% Similarity=0.271 Sum_probs=68.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC--cc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG--RK 143 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g--~~ 143 (172)
.......+|+++|..++....|...|..|| .+..|.+ + .| .-|+++.|.+...++.|+..|-|..|+| ++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fG--pir~Idy--~--hg--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFG--PIRIIDY--R--HG--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRR 522 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccC--cceeeec--c--cC--CcceeeecccCccchhhHHHHhcCcCCCCCcc
Confidence 456678999999999999999999999999 7776554 2 23 3599999999999999999999999987 78
Q ss_pred cEEeccCCCC
Q psy8001 144 PMVAYPTRNV 153 (172)
Q Consensus 144 l~v~~a~~~~ 153 (172)
|+|.++....
T Consensus 523 ~rvdla~~~~ 532 (975)
T KOG0112|consen 523 LRVDLASPPG 532 (975)
T ss_pred cccccccCCC
Confidence 9999998643
No 118
>KOG0128|consensus
Probab=96.82 E-value=0.00065 Score=59.63 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=71.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
...|+|+|.|+..|.++|+.++..+| .+..+.++..+ .|+.+|-+||.|.+..++.+++...+...+..+.+.|..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~g--n~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTG--NVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccC--Cccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 46789999999999999999999999 78888877777 8999999999999999999999888888888888888876
Q ss_pred CCC
Q psy8001 150 TRN 152 (172)
Q Consensus 150 ~~~ 152 (172)
.+.
T Consensus 813 np~ 815 (881)
T KOG0128|consen 813 NPE 815 (881)
T ss_pred CCc
Confidence 653
No 119
>KOG0129|consensus
Probab=96.78 E-value=0.0047 Score=51.65 Aligned_cols=63 Identities=24% Similarity=0.493 Sum_probs=46.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCC-CC--Cccc---EEEEEeCCHHHHHHHHHHCC
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENAS-NG--QSKG---FCTVTLGSEESMSLVMERLP 135 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~-~g--~~~g---~afv~f~~~~~a~~al~~l~ 135 (172)
.+.||||+||+.++|+.|...|..|| . ..|.+..... .+ -.+| |.|+.|.++.+....|.++.
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FG--s-~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFG--S-VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccceeecCCCccccHHHHHhhccccc--c-eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 46899999999999999999999999 3 2333332110 11 1356 99999999998887776544
No 120
>KOG4307|consensus
Probab=96.66 E-value=0.0063 Score=52.77 Aligned_cols=85 Identities=11% Similarity=-0.062 Sum_probs=67.6
Q ss_pred CCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFID-VKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 63 ~~~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~-~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
.+.+...+.+|||-.||..+++..+.++|+..- .|+. |.|-+.+ +++.++-|||.|...+++..|+..-+-..++.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~--~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~ 503 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA--AVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH 503 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhh--hhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCc
Confidence 345667788999999999999999999999877 4544 6666666 77888999999999888888877545556677
Q ss_pred cccEEeccC
Q psy8001 142 RKPMVAYPT 150 (172)
Q Consensus 142 ~~l~v~~a~ 150 (172)
|.|+|.-..
T Consensus 504 r~irv~si~ 512 (944)
T KOG4307|consen 504 RIIRVDSIA 512 (944)
T ss_pred eEEEeechh
Confidence 888887544
No 121
>KOG2253|consensus
Probab=96.61 E-value=0.0047 Score=53.05 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=61.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
..+...+|||+|+...+..+.++.++..+| .+..++.+ -|||+.|.......+|+..|+-..++|.++.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g--~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSG--FVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCC--cchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 344556899999999999999999999999 56655432 2999999999999999999999999999887
Q ss_pred Eecc
Q psy8001 146 VAYP 149 (172)
Q Consensus 146 v~~a 149 (172)
+...
T Consensus 105 ~~~d 108 (668)
T KOG2253|consen 105 ENVD 108 (668)
T ss_pred ccch
Confidence 7653
No 122
>KOG4676|consensus
Probab=96.50 E-value=0.0045 Score=50.19 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=60.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASN---GQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~---g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
.|.|.||.+.++.+.++.+|.-+| .|..+.++-+..+ ......|||.|.+...+..|- .|.++.+-++.|.|..
T Consensus 9 vIqvanispsat~dqm~tlFg~lG--kI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLG--KIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhcc--ccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 899999999999999999999999 8999888764322 224568999999999988774 5777877777665554
Q ss_pred c
Q psy8001 149 P 149 (172)
Q Consensus 149 a 149 (172)
.
T Consensus 86 ~ 86 (479)
T KOG4676|consen 86 Y 86 (479)
T ss_pred c
Confidence 3
No 123
>KOG0128|consensus
Probab=96.48 E-value=0.00023 Score=62.33 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=57.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
-+++||+||+..+.+.+|...|..+| .+..+.+...+.+++.+|+||+.|...+.+.+||.. +...+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~--~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f-~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSG--TIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF-RDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccc--hhhhHHHHHHhhccccccceeeEeecCCchhhhhhh-hhhhhhh
Confidence 46789999999999999999999999 566665555666888999999999999999999985 4444444
No 124
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.47 E-value=0.031 Score=33.81 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhc--CCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSI--GVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL 134 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~--g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l 134 (172)
.+|+|.++.. .+-++++.+|..| +. ....|.++-|. =|-|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~-~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEE-GPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccC-CCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4799999974 6667899999988 11 25678888775 4679999999999999864
No 125
>KOG2202|consensus
Probab=96.46 E-value=0.0018 Score=49.67 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=49.3
Q ss_pred HHHHHHH-hcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 86 DMSDAIR-SIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 86 ~l~~~f~-~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
++...|. +|| .+.++.|..+. .-...|=.||.|...++|++|++.||+.-+.|++|.+++..
T Consensus 84 d~f~E~~~kyg--Eiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYG--EIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhh--hhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444455 889 78887665543 22347889999999999999999999999999999998774
No 126
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.26 E-value=0.0065 Score=44.67 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=50.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHh-cCCCCe---EEEEEEecC--CCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRS-IGVPDF---IDVKFFENA--SNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~-~g~~~~---~~~~i~~~~--~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
..+..|-|++||+..++++++..++. ++ .. ..+.-.... .......-|||.|.+.+++......++|..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~--~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLP--DEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--S--SE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcc--cccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34568999999999999999887776 66 44 233211221 112234679999999999999999999987755
Q ss_pred cc-----cEEeccC
Q psy8001 142 RK-----PMVAYPT 150 (172)
Q Consensus 142 ~~-----l~v~~a~ 150 (172)
.+ -.|++|-
T Consensus 83 ~kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 83 SKGNEYPAVVEFAP 96 (176)
T ss_dssp TTS-EEEEEEEE-S
T ss_pred CCCCCcceeEEEcc
Confidence 33 3555554
No 127
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.21 E-value=0.023 Score=34.84 Aligned_cols=55 Identities=7% Similarity=0.079 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 81 WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 81 ~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
.++-++++..|..|+ ...| ..|+ +|- ||.|.+..+|++|.+..+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I--~~d~-tGf-----YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRI--RDDR-TGF-----YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceE--EecC-CEE-----EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 456789999999999 3443 4454 433 89999999999999999999998887765
No 128
>KOG1855|consensus
Probab=95.91 E-value=0.011 Score=48.53 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=55.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEec---CCC--CC--------cccEEEEEeCCHHHHHHHHHHC
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFEN---ASN--GQ--------SKGFCTVTLGSEESMSLVMERL 134 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~---~~~--g~--------~~g~afv~f~~~~~a~~al~~l 134 (172)
...++|.+.|||.+-.-+-|.++|+.+| .|..|+|+.- ..+ +. .+-+|+|+|...+.|.+|.+.|
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G--~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVG--SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhccc--ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3577899999999888899999999999 8999998764 211 11 2558999999999999999977
Q ss_pred CCc
Q psy8001 135 PTL 137 (172)
Q Consensus 135 ~g~ 137 (172)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 544
No 129
>KOG0115|consensus
Probab=95.84 E-value=0.013 Score=45.02 Aligned_cols=75 Identities=19% Similarity=0.128 Sum_probs=58.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc----eeCCcccEE
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL----ELHGRKPMV 146 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~----~l~g~~l~v 146 (172)
..|||.||...+.-+.+.+.|+.|| .+....++.|- .++..+-++|.|...-.+..|+..+... ...++..-|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg--~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFG--PIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcC--ccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 6899999999999999999999999 77665544443 6778889999999999999999877444 334444444
Q ss_pred ec
Q psy8001 147 AY 148 (172)
Q Consensus 147 ~~ 148 (172)
..
T Consensus 109 eP 110 (275)
T KOG0115|consen 109 EP 110 (275)
T ss_pred Ch
Confidence 43
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.79 E-value=0.14 Score=34.70 Aligned_cols=67 Identities=7% Similarity=0.057 Sum_probs=48.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
.+-+...|..+..++|..+.+.+-. .+..++|++|.. .++=.+++.|.+.++|..-...+||..+..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~-~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFRE-DIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccc-cEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555566666677666666553 578889988742 245568999999999999999999996654
No 131
>KOG2068|consensus
Probab=95.66 E-value=0.0055 Score=48.71 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=59.4
Q ss_pred ceEEEcCCCCCCCHHHH-H--HHHHhcCCCCeEEEEEEecCC----CCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 71 CNLYVGNLTWWTTEADM-S--DAIRSIGVPDFIDVKFFENAS----NGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l-~--~~f~~~g~~~~~~~~i~~~~~----~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
.-+||-+|+.....+++ + ..|.+|| .+..|.+..+.. .+... -++|+|...++|..||...+|..++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqyg--ki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYG--KINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccc--cceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhh
Confidence 45788888876655444 3 5788999 888888777651 12222 3899999999999999999999999999
Q ss_pred cEEeccCC
Q psy8001 144 PMVAYPTR 151 (172)
Q Consensus 144 l~v~~a~~ 151 (172)
|+..+...
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 87776654
No 132
>KOG1996|consensus
Probab=95.55 E-value=0.062 Score=42.28 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEecCCCCCc-ccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 85 ADMSDAIRSIGVPDFIDVKFFENASNGQS-KGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 85 ~~l~~~f~~~g~~~~~~~~i~~~~~~g~~-~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
++++.-..+|| .+..|.|..++.-... .---||+|...++|-+|+--|||..|+||.++.-+-
T Consensus 301 de~keEceKyg--~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYG--KVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhc--ceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46677888999 8888887776533332 235899999999999999999999999998875443
No 133
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.40 E-value=0.08 Score=39.20 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCC--CceeCCcccEEeccCCC
Q psy8001 83 TEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP--TLELHGRKPMVAYPTRN 152 (172)
Q Consensus 83 ~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~--g~~l~g~~l~v~~a~~~ 152 (172)
....|+++|..++ .+..+.++. +-+-..|.|.+.+.|.+|...|+ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~--~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYD--PPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcC--CceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3478999999999 666665443 34568899999999999999999 99999999999988643
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.20 E-value=0.16 Score=35.87 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=56.6
Q ss_pred CCCCCcceEEEcCCCCCCC----HHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC
Q psy8001 65 ATSSSHCNLYVGNLTWWTT----EADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH 140 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~----~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~ 140 (172)
..+++..+|.|+=|..++. -..+...++.|| .|.+|.+. | +.-|.|.|.+..+|-.|+.+++. ...
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG--pI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~p 150 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG--PIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAP 150 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcC--Ccceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCC
Confidence 3456667888875544433 334556778899 89888762 2 34799999999999999998876 778
Q ss_pred CcccEEeccC
Q psy8001 141 GRKPMVAYPT 150 (172)
Q Consensus 141 g~~l~v~~a~ 150 (172)
|..+.++|-.
T Consensus 151 gtm~qCsWqq 160 (166)
T PF15023_consen 151 GTMFQCSWQQ 160 (166)
T ss_pred CceEEeeccc
Confidence 8889998864
No 135
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.16 E-value=0.082 Score=33.87 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCC
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 135 (172)
..+|+ +|..|...||.++|+.|| . ..|.++.|- =|||.....+.+..++..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG--~-I~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFG--Q-IYVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCC--C-EEEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCC--c-EEEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 44454 999999999999999999 3 345555542 79999999999999988765
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.75 E-value=0.061 Score=33.61 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHhcC-CC--CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 80 WWTTEADMSDAIRSIG-VP--DFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 80 ~~~~~~~l~~~f~~~g-~~--~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
..++..+|-.++...+ .. .|-.+.|. ..|+||+... +.++.+++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4677888888888664 11 34456653 2399999976 4778899999999999999999865
No 137
>KOG0112|consensus
Probab=94.09 E-value=0.012 Score=52.30 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=63.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...+.+||+|||+..+++.+|+..|..+| .+..|.|-.-+ -+...-|+||.|.+...+-.|+..+.+..|..-.+++
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~g--kve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESG--KVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhc--cccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 34567899999999999999999999999 78888764433 2333459999999999999999989988776544444
Q ss_pred ecc
Q psy8001 147 AYP 149 (172)
Q Consensus 147 ~~a 149 (172)
.+.
T Consensus 446 glG 448 (975)
T KOG0112|consen 446 GLG 448 (975)
T ss_pred ccc
Confidence 444
No 138
>KOG4410|consensus
Probab=93.90 E-value=1.3 Score=35.00 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=36.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCH
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSE 124 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~ 124 (172)
+..+.|+++||+.++.-.+|+..+.+.+ .. -..|.+ ..+.|-||+.|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~--~~-pm~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRE--CT-PMSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcC--CC-ceeEee----ecCCcceeEecCCc
Confidence 4456799999999999999999999888 21 222322 22578899999653
No 139
>KOG2591|consensus
Probab=93.82 E-value=0.16 Score=43.23 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=55.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc--eeCCccc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL--ELHGRKP 144 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~--~l~g~~l 144 (172)
...+|.|.++.|+..+-.++++.+|..-.-+.+..|.+-.+. + =||+|.+..+|+.|.+.|... .|.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--n-----WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--N-----WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--c-----eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 345788999999999999999999986331166677665542 2 289999999999998766544 6777776
Q ss_pred EEec
Q psy8001 145 MVAY 148 (172)
Q Consensus 145 ~v~~ 148 (172)
..+.
T Consensus 245 mARI 248 (684)
T KOG2591|consen 245 MARI 248 (684)
T ss_pred hhhh
Confidence 5443
No 140
>KOG4210|consensus
Probab=93.36 E-value=0.045 Score=43.32 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=63.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
..-+++|++++.+.+.+.+...++...| ......+.....+..++|++++.|...+.+..||.......+.++.+...
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g--~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAG--LRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred cccccccccccccchhhccccccchhhc--CcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 3567899999999999998889999888 44454445545577789999999999999999998544457777776655
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
....
T Consensus 164 l~~~ 167 (285)
T KOG4210|consen 164 LNTR 167 (285)
T ss_pred cccc
Confidence 5543
No 141
>KOG4285|consensus
Probab=92.49 E-value=0.58 Score=37.09 Aligned_cols=70 Identities=9% Similarity=-0.021 Sum_probs=49.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc-ccEEecc
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR-KPMVAYP 149 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~-~l~v~~a 149 (172)
.=|-|-++++.-. ..+..+|.+|| .|.+.- ++.+..|-+|-|.+.-+|++||. .||..|+|. .|-|..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG--~Vvkhv------~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCG--EVVKHV------TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhC--eeeeee------cCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 3455667776544 56778999999 665432 22233489999999999999998 499999986 4556654
Q ss_pred C
Q psy8001 150 T 150 (172)
Q Consensus 150 ~ 150 (172)
.
T Consensus 268 t 268 (350)
T KOG4285|consen 268 T 268 (350)
T ss_pred C
Confidence 3
No 142
>KOG2135|consensus
Probab=91.66 E-value=0.11 Score=43.30 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=54.5
Q ss_pred eEEEcCCCCCC-CHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 72 NLYVGNLTWWT-TEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 72 ~v~V~nL~~~~-~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
.+-+.-.++.. +.++|-.+|.+|| .|..|-+-+. .-.|.|+|.+..+|-.|-. .++..|+||-|+|.|-+
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG--~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFG--EIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcC--ccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 33444445443 3578899999999 8888776443 3478999999999977765 69999999999999998
Q ss_pred C
Q psy8001 151 R 151 (172)
Q Consensus 151 ~ 151 (172)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 7
No 143
>KOG0804|consensus
Probab=89.35 E-value=2.4 Score=35.52 Aligned_cols=69 Identities=9% Similarity=0.126 Sum_probs=57.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
...|.|-.+|-.++--||-.|...+-. .|..++|++|..- ++=..++.|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~-~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIK-QISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhh-hhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 678999999999999999999887653 5889999996522 23358999999999999999999997654
No 144
>KOG4660|consensus
Probab=89.21 E-value=0.7 Score=39.39 Aligned_cols=85 Identities=8% Similarity=0.099 Sum_probs=55.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCC--------------------------CeEEEEEEecCCCCCcccEEEEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVP--------------------------DFIDVKFFENASNGQSKGFCTVT 120 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~--------------------------~~~~~~i~~~~~~g~~~g~afv~ 120 (172)
....+++.|+|++...+..+|.++....-.. .-..+.+..|=.+..+.|||||.
T Consensus 358 ~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFIN 437 (549)
T KOG4660|consen 358 RDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFIN 437 (549)
T ss_pred ccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEe
Confidence 3456677778887777766666554322100 22234444443344568999999
Q ss_pred eCCHHHHHHHHHHCCCce---eCC-cccEEeccCC
Q psy8001 121 LGSEESMSLVMERLPTLE---LHG-RKPMVAYPTR 151 (172)
Q Consensus 121 f~~~~~a~~al~~l~g~~---l~g-~~l~v~~a~~ 151 (172)
|-+.+++..+.+++||.. +.+ +...+.||+-
T Consensus 438 m~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 438 MTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred ecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 999999999999999994 444 3456777764
No 145
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=88.55 E-value=0.87 Score=28.05 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 85 ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 85 ~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
++|.+.|...|. .+..++-+..+.++..-..-||+.....+-.. .|+=..|+|++|.|+...
T Consensus 2 ~~I~~~L~~~G~-~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGF-PVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCC-ceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 467888999996 68888888887666656678888875543332 466678999999998664
No 146
>KOG4574|consensus
Probab=86.92 E-value=3.7 Score=37.07 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=58.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee--CCcccEEecc
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL--HGRKPMVAYP 149 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l--~g~~l~v~~a 149 (172)
+.++.|..-..+...|..++.+|| .+.....+++- ..|.|+|.+.+.|-.|+++|+|.++ -|-..+|.+|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYG--SVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhc--chhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 445566677788888999999999 78777655542 3799999999999999999999954 4677899988
Q ss_pred CC
Q psy8001 150 TR 151 (172)
Q Consensus 150 ~~ 151 (172)
+.
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 85
No 147
>KOG4676|consensus
Probab=85.10 E-value=0.22 Score=40.73 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=54.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
..+++|++|.-.|...++.+.|..+| .+...++- .+-..-+|-++|........|++ ++|.++.-+...+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~G--ev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~a 221 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKG--EVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRA 221 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcc--hhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhh
Confidence 46799999999999999999999999 66655543 33455688899999888888887 57777664443333
No 148
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=84.67 E-value=2.3 Score=26.10 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccCC
Q psy8001 85 ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTR 151 (172)
Q Consensus 85 ~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~~ 151 (172)
++|.+.|...|- .+.++.-+..+.+...-..-||++....+ ..+.|+=..|++.+|.|+..+.
T Consensus 2 ~~I~~~L~~~G~-~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGH-PVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCC-ceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCC
Confidence 567888888885 57788777776566666788888876544 3345666789999999997654
No 149
>KOG4483|consensus
Probab=82.10 E-value=4.8 Score=33.33 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=47.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~ 133 (172)
-...|-|.++|....-++|-..|..|+. .-..|+++-|. .+|..|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3467889999998888999999999983 45667777764 899999999999999873
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=73.09 E-value=15 Score=25.08 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCC-HHHHHHHHH
Q psy8001 82 TTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGS-EESMSLVME 132 (172)
Q Consensus 82 ~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~-~~~a~~al~ 132 (172)
.+.++|++.|+.|. .+ +++.++++ ..+.|+++|.|.. -.-...|++
T Consensus 29 ~~~~~l~~~l~~f~--p~-kv~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFN--PL-KVKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH-----S-EEEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC--Cc-eeEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 34578999999998 44 57777775 2568999999974 444455554
No 151
>KOG2318|consensus
Probab=72.00 E-value=27 Score=30.50 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=59.0
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHHhc----CCCCeEEEEEEecC----------CCCC-------------------
Q psy8001 67 SSSHCNLYVGNLTWW-TTEADMSDAIRSI----GVPDFIDVKFFENA----------SNGQ------------------- 112 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~-~~~~~l~~~f~~~----g~~~~~~~~i~~~~----------~~g~------------------- 112 (172)
...+.+|-|.||.|. +...+|.-+|+.| | .|.+|.|.... .+|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gG--silSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGG--SILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCC--ceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 455678999999985 6778999998876 5 57777776421 1111
Q ss_pred -----------------c-ccEEEEEeCCHHHHHHHHHHCCCceeCC--cccEEecc
Q psy8001 113 -----------------S-KGFCTVTLGSEESMSLVMERLPTLELHG--RKPMVAYP 149 (172)
Q Consensus 113 -----------------~-~g~afv~f~~~~~a~~al~~l~g~~l~g--~~l~v~~a 149 (172)
. .=||.|+|.+...|......++|.++.. ..|-+++-
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 1279999999999999999999998875 44555443
No 152
>KOG4454|consensus
Probab=68.93 E-value=1 Score=34.27 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=58.3
Q ss_pred CCcceEEEcC----CCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 68 SSHCNLYVGN----LTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 68 ~~~~~v~V~n----L~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
....+++.|| |...++++.+...|+.-| .+..+++..+. +|+++-++|+.+.-....-.++..+.+..+--++
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~--p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~ 154 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAG--PIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKK 154 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccC--CCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCcCCCC
Confidence 3456778888 888899999999999999 88888888877 4888899999998888888888877776443333
No 153
>KOG2193|consensus
Probab=64.46 E-value=0.63 Score=38.60 Aligned_cols=77 Identities=10% Similarity=0.137 Sum_probs=61.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEE-EecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKF-FENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i-~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
...+-|.|+|+...++.|..++..|| .+..+.. +.+..+ ..--|+|...+.+..||..|+|..+.+..++|.|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg--~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYG--TVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccC--CHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34688999999999999999999999 7776653 333322 2234678899999999999999999999999988
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
-...
T Consensus 154 iPde 157 (584)
T KOG2193|consen 154 IPDE 157 (584)
T ss_pred Cchh
Confidence 7643
No 154
>KOG4019|consensus
Probab=64.18 E-value=6.8 Score=28.93 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=48.4
Q ss_pred ceEEEcCCCCCCCH-----HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc-cc
Q psy8001 71 CNLYVGNLTWWTTE-----ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR-KP 144 (172)
Q Consensus 71 ~~v~V~nL~~~~~~-----~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~-~l 144 (172)
.++.+.+++..+.. .....+|.++. ......+++ +.++--|.|.+.+.|..|...+++..|.|+ .+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n--~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQIN--EDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhC--cchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 45667777654432 23345566666 333322222 345566789999999999999999999998 77
Q ss_pred EEeccCC
Q psy8001 145 MVAYPTR 151 (172)
Q Consensus 145 ~v~~a~~ 151 (172)
+.-++.+
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 7766654
No 155
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=58.49 E-value=16 Score=27.13 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=43.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~ 132 (172)
.......+++++++..++...+...|..+| .+....+...........+.++.+.....+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRG--DIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccc--cceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 345567899999999999999999999999 77666555444333334444444444444444443
No 156
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=57.35 E-value=26 Score=21.09 Aligned_cols=18 Identities=11% Similarity=0.301 Sum_probs=14.0
Q ss_pred HHHHHHHHhcCCCCeEEEEE
Q psy8001 85 ADMSDAIRSIGVPDFIDVKF 104 (172)
Q Consensus 85 ~~l~~~f~~~g~~~~~~~~i 104 (172)
++|+++|+.+| .|.-+.+
T Consensus 9 ~~iR~~fs~lG--~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLG--EIAVLYV 26 (62)
T ss_pred HHHHHHHHhcC--cEEEEEE
Confidence 57999999999 6665543
No 157
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=56.13 E-value=51 Score=21.09 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=41.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~ 132 (172)
+-|+-..+..++..++++.+.. ||+ .+..|..+.-+ . ..-=|||.+.....|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~V-kV~~VnT~~~~-~--~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDV-KVEKVNTLITP-K--GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC-ceEEEEeEEcC-C--CcEEEEEEeCCCCcHHHHHH
Confidence 3555566789999999999986 786 78888766654 1 12259999988887765543
No 158
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=55.92 E-value=27 Score=23.02 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=30.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCC
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGS 123 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~ 123 (172)
..-||||+++..+.+.-...+-+.++ .- .+-+++ +.+ .-.||.|-++..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~--~G-~avmv~-~~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAE--EG-NVVMAW-ATN-TESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCC--CC-cEEEEE-cCC-CCCCcEEEecCC
Confidence 34699999998887665444444455 32 333344 223 334999998865
No 159
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=55.33 E-value=36 Score=21.93 Aligned_cols=48 Identities=29% Similarity=0.329 Sum_probs=30.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeC
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~ 122 (172)
..-|||||++..+.+.-...+....+ . -++-+++...+ ..||+|-++.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~--~-G~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIG--D-GSAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCC--C-ccEEEEEccCC--CCCEEEEEeC
Confidence 34699999999888765555555444 2 24444443323 6789998884
No 160
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=55.24 E-value=50 Score=20.73 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=40.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al 131 (172)
+-|+-..+..++..+++..++. ||+ .+..|..+.-+. ..-=|||.+.....|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~V-kV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDV-KVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC-ceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 4566677889999999999986 786 788887655442 1225999998777765543
No 161
>PRK10905 cell division protein DamX; Validated
Probab=50.28 E-value=81 Score=25.54 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=40.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCc-ccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQS-KGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~-~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
..+++|-|+.+. +++.|+.+..++| +....+.....+|+. --.-+-.|.+.++|++|+..|-..
T Consensus 245 a~~YTLQL~A~S---s~~~l~~fakKlg---L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 245 SSHYTLQLSSSS---NYDNLNGWAKKEN---LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCceEEEEEecC---CHHHHHHHHHHcC---CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 445677666544 5677888888888 233333343334542 223445789999999999987643
No 162
>KOG2295|consensus
Probab=48.69 E-value=2.6 Score=36.21 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=51.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
..|.++|+|+++.++-++|..++..+- .+..+.+-.+-.-.+...++.|.|.---...-|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~--~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIP--GFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCc--hheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 457899999999999999999999887 5555544332212234567888897655666666667777655443
No 163
>KOG1295|consensus
Probab=47.84 E-value=24 Score=29.04 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=47.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEE-EEEEecCCC--CCcccEEEEEeCCHHHHHHHHHHCCCceeC
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFID-VKFFENASN--GQSKGFCTVTLGSEESMSLVMERLPTLELH 140 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~-~~i~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~g~~l~ 140 (172)
-+.|-|.+||...++.+|.+.+..+- .-.. ..+...... ....+.+||.|...++...-...++|+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~--~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFP--EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCc--cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 45788999999999988887776654 2222 122211101 112578999999999988888889988654
No 164
>KOG0226|consensus
Probab=46.05 E-value=33 Score=26.86 Aligned_cols=77 Identities=3% Similarity=-0.015 Sum_probs=51.5
Q ss_pred CCCcceEEEcCCCCCCCHHH-H--HHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 67 SSSHCNLYVGNLTWWTTEAD-M--SDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~-l--~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
.+.-+..+++|+-..+..+- | ...|+.+- .+...++++++ -+...+++|+.|........+-..-++..++-+.
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p--~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~ 169 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYP--SLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPP 169 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccch--hhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcc
Confidence 35566778888766666554 3 56677777 67777777776 6677899999998766666555444555555555
Q ss_pred cEE
Q psy8001 144 PMV 146 (172)
Q Consensus 144 l~v 146 (172)
|+.
T Consensus 170 VR~ 172 (290)
T KOG0226|consen 170 VRL 172 (290)
T ss_pred eee
Confidence 444
No 165
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=40.83 E-value=1.3e+02 Score=21.73 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=27.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEec
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFEN 107 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~~ 107 (172)
+.|+-.++..++..+|+..|.. ||+ .+..|..+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~V-kV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKV-KVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC-ceEEEEeEec
Confidence 4677778899999999999986 786 7878766543
No 166
>CHL00030 rpl23 ribosomal protein L23
Probab=40.72 E-value=1e+02 Score=20.10 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEec
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFEN 107 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~~ 107 (172)
+-|+-..+..++..++++.++. ||+ .+..|..+.-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~V-kV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGV-KVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC-eEEEEEEEEc
Confidence 4566667889999999999986 786 7888776554
No 167
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=38.63 E-value=71 Score=20.64 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=28.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhc--CCCCeEEEEEEecCCCCCcccEEEEEeCC
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSI--GVPDFIDVKFFENASNGQSKGFCTVTLGS 123 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~--g~~~~~~~~i~~~~~~g~~~g~afv~f~~ 123 (172)
..-||||+++..+.+. |.+...+. + . -.+-+++. +....||.|-++..
T Consensus 25 ~~GVyVg~~s~rVRe~-lW~~v~~~~~~--~-G~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRER-IWDYLAQHCPP--K-GSLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHH-HHHHHHHhCCC--C-ccEEEEEe--CCCCCCcEEEecCC
Confidence 3469999999888765 44444443 3 2 23434433 22356899988864
No 168
>KOG4008|consensus
Probab=35.56 E-value=34 Score=26.44 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=25.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcC
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIG 95 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g 95 (172)
.....++|+-|+|...+++.|..+.+++|
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg 65 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLG 65 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhh
Confidence 34456899999999999999999999998
No 169
>KOG0156|consensus
Probab=33.47 E-value=1.2e+02 Score=26.14 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=43.2
Q ss_pred EEcCCCCCCC---HHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 74 YVGNLTWWTT---EADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 74 ~V~nL~~~~~---~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
+||||+.-.. ...++++=.+|| .+-.+++-.. -.|...+.+.|+.++.. |+..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yG--pi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYG--PVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhC--CeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 4778775443 344555556899 8888777332 37888999999999985 8999999875
No 170
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=30.33 E-value=1.9e+02 Score=20.02 Aligned_cols=72 Identities=11% Similarity=0.008 Sum_probs=50.5
Q ss_pred cceEEEcCCCCC---CCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 70 HCNLYVGNLTWW---TTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 70 ~~~v~V~nL~~~---~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...|.|+..... .+-..+.+.+..-|+ .+.++..- .+-..|.|.+.++..+|.+.|....-++..|-+
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI-~~ksi~~~--------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAl 105 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGI-HIKSITPE--------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQ 105 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCC-CcceEEee--------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 345666655333 456778888988885 45665441 125689999999999999988877666777777
Q ss_pred eccC
Q psy8001 147 AYPT 150 (172)
Q Consensus 147 ~~a~ 150 (172)
..+.
T Consensus 106 nl~p 109 (127)
T PRK10629 106 QDDN 109 (127)
T ss_pred ecCC
Confidence 7665
No 171
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.15 E-value=74 Score=20.05 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=21.7
Q ss_pred cccEEEEEeCCHHHHHHHHHHCCCce
Q psy8001 113 SKGFCTVTLGSEESMSLVMERLPTLE 138 (172)
Q Consensus 113 ~~g~afv~f~~~~~a~~al~~l~g~~ 138 (172)
.+||-||+=.+..+...|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 68999999999999999998766543
No 172
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.08 E-value=58 Score=19.83 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=22.0
Q ss_pred cEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 115 GFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 115 g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
.+.++.|.+...|.+|-+.|....+.++
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3789999999999888887776655444
No 173
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=27.98 E-value=73 Score=24.98 Aligned_cols=35 Identities=11% Similarity=0.006 Sum_probs=26.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEe
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~ 106 (172)
.....|+|||+.++-.-+..++...- .+....+|.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~--~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKF--IIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccC--ccceEEEEe
Confidence 34677999999999998888887665 444555544
No 174
>KOG2855|consensus
Probab=27.57 E-value=1e+02 Score=25.11 Aligned_cols=49 Identities=27% Similarity=0.295 Sum_probs=36.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTL 121 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f 121 (172)
..+...|||++..+.--.+|-..+.++++ ....++...+ ...++++|..
T Consensus 59 LG~~~afiGkvGdD~fG~~l~~~L~~~~V-~~~~v~~~~~----~~T~~a~i~v 107 (330)
T KOG2855|consen 59 LGGRVAFIGKVGDDEFGDDLLDILKQNGV-DTSGVKFDEN----ARTACATITV 107 (330)
T ss_pred cCcceeeeecccchhhHHHHHHHHhhCCc-ccccceecCC----CceEEEEEEE
Confidence 44678999999999888999999999986 5666554333 3456666655
No 175
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=27.30 E-value=1.6e+02 Score=23.67 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=53.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecC-------CCCCcccEEEEEeCCHHHHHH----HHHHCCCc
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENA-------SNGQSKGFCTVTLGSEESMSL----VMERLPTL 137 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~-------~~g~~~g~afv~f~~~~~a~~----al~~l~g~ 137 (172)
.++.|...|+...++--.+...|-+|| .|+.|.++.+. ..-+...-..+.|-+.+.+.. .++.|...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~--pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFG--PIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccC--ceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 456788899998888777778888999 99999998765 112234567888887765422 22222222
Q ss_pred --eeCCcccEEeccC
Q psy8001 138 --ELHGRKPMVAYPT 150 (172)
Q Consensus 138 --~l~g~~l~v~~a~ 150 (172)
.+....|.|++..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 5666677766654
No 176
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=27.01 E-value=1.4e+02 Score=19.19 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=25.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEe
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFE 106 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~ 106 (172)
..|+-.++..++..+|++++.. ||+ .+..|..+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V-~V~~Vnt~~ 55 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGV-KVKKVNTMN 55 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTS-EEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCC-CeeEEEEeE
Confidence 4556667889999999999985 886 677776544
No 177
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.67 E-value=1.9e+02 Score=20.46 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=25.4
Q ss_pred HHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 89 DAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 89 ~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
.++..|+ |..|-|......|+..|-+ +.| ..+.||+.+.+.
T Consensus 55 kl~~dy~---Vd~VvIk~R~~KGKfAGga-~~F----KmEaaIQL~~~~ 95 (138)
T PF11215_consen 55 KLMEDYK---VDKVVIKERATKGKFAGGA-VGF----KMEAAIQLIDDV 95 (138)
T ss_pred HHHHHcC---CCEEEEEecccCCCccCCc-hhH----HHHHHHHhcCCC
Confidence 3445556 6677766655567765554 666 567778766544
No 178
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.63 E-value=1.4e+02 Score=17.36 Aligned_cols=47 Identities=6% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 85 ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 85 ~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
.++-++|.+.|. +|.++...... . ++.--+.+.+.+.+.++|+. +|.
T Consensus 16 a~v~~~l~~~~i-nI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 16 AAVTEILSEAGI-NIRALSIADTS---E-FGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred HHHHHHHHHCCC-CEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHH-CCC
Confidence 567888988886 68887754432 2 36656667777677777764 444
No 179
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=26.38 E-value=1.8e+02 Score=18.94 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=28.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEe----cCCCCCcccEEEEEe
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE----NASNGQSKGFCTVTL 121 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~----~~~~g~~~g~afv~f 121 (172)
..|+.|||..+.+.++...-..+.. ....+.|.. ....+.+.|++.+-+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~-~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNW-YGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCT-TCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhh-hCCCeEEEEecccCccCCCCCceEEEEE
Confidence 4589999999998877666555541 122444433 233555677765544
No 180
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=25.89 E-value=1.6e+02 Score=18.79 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred CeEEEEEEecCCCCCcccEEEEEeCC
Q psy8001 98 DFIDVKFFENASNGQSKGFCTVTLGS 123 (172)
Q Consensus 98 ~~~~~~i~~~~~~g~~~g~afv~f~~ 123 (172)
.+..++|-.-...|+.+|||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46677776665568889999999975
No 181
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=23.48 E-value=3e+02 Score=20.20 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=40.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHC
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ-SKGFCTVTLGSEESMSLVMERL 134 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~-~~g~afv~f~~~~~a~~al~~l 134 (172)
.=||+|....-.-..|-+.|...| - .|.++..+.+-. ..+.-.+.+.+.++...++..+
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~G--a--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRG--A--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-----EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred ceEecCCCcCHHHHHHHHHHHHCC--C--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 458999998888889999888888 2 566666653322 4588999999999998888743
No 182
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=23.20 E-value=1.5e+02 Score=16.49 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=20.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIG 95 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g 95 (172)
+.+++.+........+|.+++..+|
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~G 26 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLG 26 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcC
Confidence 4677777766788899999999998
No 183
>KOG4365|consensus
Probab=22.85 E-value=14 Score=31.20 Aligned_cols=77 Identities=3% Similarity=-0.238 Sum_probs=53.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccCC
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTR 151 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~~ 151 (172)
..|+..++-..+++++.-.|..|| -|..+..-+.-..|...-.+|+.... ..+..+|.-+.-..+.|.+++|..++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~--~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPS--IISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCc--ceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456778888899999999999999 56555443333234445567777654 455667776666778888888888764
No 184
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=22.67 E-value=44 Score=21.63 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=18.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHH
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDA 90 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~ 90 (172)
....+|-|.|||....+++|++.
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheee
Confidence 34568999999999999988743
No 185
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.31 E-value=71 Score=16.99 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHhcC
Q psy8001 81 WTTEADMSDAIRSIG 95 (172)
Q Consensus 81 ~~~~~~l~~~f~~~g 95 (172)
.+++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 678899999998765
No 186
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.65 E-value=3.1e+02 Score=19.55 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=37.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHH
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~ 128 (172)
+-|+-.++..++..+|++.++. |++ .+..|..+.-+. |. -=|||.+....+|.
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~V-kV~kVNTli~p~-g~--KKA~V~L~~~~~ai 136 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDV-KVVKVNTLITPD-GL--KKAYIRLSPDVDAL 136 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCC-eeEEEEeEEcCC-Cc--eEEEEEECCCCcHH
Confidence 4556667788999999999986 786 788876555432 21 25899997666543
No 187
>KOG4840|consensus
Probab=21.59 E-value=2e+02 Score=22.45 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=37.6
Q ss_pred cceEEEcCCCCCCCH----HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeC-CHHHHHHHHHHCCCceeCCccc
Q psy8001 70 HCNLYVGNLTWWTTE----ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG-SEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~----~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~-~~~~a~~al~~l~g~~l~g~~l 144 (172)
..-||||+|....-. ++|-..+-+.+ +.++.--....-.||+.-... +.++...+++.+.+..+.-..+
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~------wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vV 110 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENS------WSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVV 110 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhcc------ceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceE
Confidence 456999998765433 33333343333 111111101112356655554 6677788888666555444444
Q ss_pred EEecc
Q psy8001 145 MVAYP 149 (172)
Q Consensus 145 ~v~~a 149 (172)
-|-++
T Consensus 111 L~GhS 115 (299)
T KOG4840|consen 111 LVGHS 115 (299)
T ss_pred EEecC
Confidence 44444
No 188
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.07 E-value=39 Score=28.19 Aligned_cols=60 Identities=8% Similarity=-0.019 Sum_probs=45.1
Q ss_pred ceEEEcCCCCCCCHH--------HHHHHHHh--cCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q psy8001 71 CNLYVGNLTWWTTEA--------DMSDAIRS--IGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~--------~l~~~f~~--~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~ 132 (172)
..+|+.+++.....+ ++...|.. ++ .+..+..-++..+...+|--|++|.....+++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~--~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHA--PPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccC--ChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 456777776655444 78888887 45 67777777776677788889999999999998863
No 189
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=21.01 E-value=1.7e+02 Score=16.22 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q psy8001 85 ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131 (172)
Q Consensus 85 ~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al 131 (172)
..+...|.+.|+ ++..+.+.... ...+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~i-nI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGI-NIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCC-CEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 456678888886 68777755432 24567777778877666654
No 190
>PRK11901 hypothetical protein; Reviewed
Probab=20.25 E-value=4.8e+02 Score=21.27 Aligned_cols=65 Identities=12% Similarity=0.219 Sum_probs=43.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcc-cEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSK-GFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~-g~afv~f~~~~~a~~al~~l~g~ 137 (172)
....++|-+..+ ..++.|..|..+++ +..+++.....+|+.- -.-|-.|.+.++|..|+..|-..
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~---L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN---LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC---cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 355677766654 45778888888877 4456666655455431 22334788999999999987644
No 191
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.20 E-value=1.5e+02 Score=22.84 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHH--hcC
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIR--SIG 95 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~--~~g 95 (172)
...-+.|||||+.++..-|.+++. .+|
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g 124 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFG 124 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGC
T ss_pred CCceEEEEEecccchHHHHHHHhhccccc
Confidence 345789999999999999998887 455
Done!