Query psy8001
Match_columns 172
No_of_seqs 147 out of 1629
Neff 9.0
Searched_HMMs 29240
Date Sat Aug 17 00:18:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 3.4E-24 1.2E-28 142.6 10.8 82 68-151 17-98 (99)
2 3n9u_C Cleavage and polyadenyl 99.9 1.2E-23 4E-28 150.9 8.8 101 68-168 53-153 (156)
3 3s8s_A Histone-lysine N-methyl 99.9 2.7E-22 9.2E-27 135.8 11.3 82 69-152 5-86 (110)
4 2fy1_A RNA-binding motif prote 99.9 6.7E-22 2.3E-26 135.0 12.0 84 68-154 5-88 (116)
5 3bs9_A Nucleolysin TIA-1 isofo 99.9 4.9E-22 1.7E-26 128.5 10.6 83 68-152 4-86 (87)
6 2dgo_A Cytotoxic granule-assoc 99.9 2.1E-21 7.1E-26 132.0 14.0 89 65-155 10-98 (115)
7 3md1_A Nuclear and cytoplasmic 99.9 7.5E-22 2.6E-26 126.5 10.9 81 70-152 1-81 (83)
8 3p5t_L Cleavage and polyadenyl 99.9 1.3E-22 4.5E-27 132.4 7.3 83 71-153 2-84 (90)
9 3q2s_C Cleavage and polyadenyl 99.9 1.7E-22 5.7E-27 153.3 8.7 96 69-164 67-162 (229)
10 2la6_A RNA-binding protein FUS 99.9 1E-21 3.5E-26 130.2 11.4 84 65-150 8-99 (99)
11 2lkz_A RNA-binding protein 5; 99.9 1.2E-22 4E-27 134.1 6.6 85 67-151 6-94 (95)
12 2cpz_A CUG triplet repeat RNA- 99.9 2.4E-21 8.1E-26 131.8 13.2 85 66-152 21-105 (115)
13 1x5u_A Splicing factor 3B subu 99.9 1.8E-21 6E-26 130.2 12.2 87 65-153 10-96 (105)
14 2khc_A Testis-specific RNP-typ 99.9 2.7E-21 9.2E-26 132.0 13.0 84 65-150 35-118 (118)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.3E-21 4.5E-26 125.9 10.3 82 67-150 4-85 (85)
16 2lxi_A RNA-binding protein 10; 99.9 2.9E-22 1E-26 131.2 6.8 82 71-153 2-84 (91)
17 2jrs_A RNA-binding protein 39; 99.9 3.4E-21 1.2E-25 129.9 12.0 86 65-152 21-106 (108)
18 2cqc_A Arginine/serine-rich sp 99.9 3.9E-21 1.3E-25 126.2 12.0 85 65-151 10-94 (95)
19 1p27_B RNA-binding protein 8A; 99.9 2E-21 6.9E-26 130.2 10.8 85 66-152 19-103 (106)
20 2x1f_A MRNA 3'-END-processing 99.9 2.4E-21 8.1E-26 127.7 11.0 85 70-156 2-86 (96)
21 2dnz_A Probable RNA-binding pr 99.9 2.6E-21 8.9E-26 127.1 11.0 82 69-152 4-85 (95)
22 1u6f_A Tcubp1, RNA-binding pro 99.9 2.1E-20 7.1E-25 131.1 16.1 87 65-153 37-123 (139)
23 2cq0_A Eukaryotic translation 99.9 2.1E-21 7.1E-26 129.5 10.5 85 66-152 11-95 (103)
24 2dgs_A DAZ-associated protein 99.9 3.1E-21 1.1E-25 127.8 11.1 84 66-152 6-89 (99)
25 1whw_A Hypothetical protein ri 99.9 3.3E-21 1.1E-25 127.6 11.2 85 67-153 5-89 (99)
26 4f25_A Polyadenylate-binding p 99.9 2.4E-21 8.4E-26 131.9 10.7 80 70-153 5-84 (115)
27 2dnm_A SRP46 splicing factor; 99.9 1.4E-21 4.7E-26 130.4 9.3 86 65-152 8-93 (103)
28 2div_A TRNA selenocysteine ass 99.9 4E-21 1.4E-25 127.2 11.4 84 67-152 6-94 (99)
29 3ex7_B RNA-binding protein 8A; 99.9 1.5E-21 5E-26 134.8 9.7 87 65-153 17-103 (126)
30 2e5h_A Zinc finger CCHC-type a 99.9 2.7E-21 9.4E-26 126.7 10.2 82 67-150 13-94 (94)
31 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.8E-21 1.6E-25 136.9 12.3 84 68-153 37-120 (156)
32 2do4_A Squamous cell carcinoma 99.9 6E-21 2.1E-25 126.6 11.8 85 66-153 13-97 (100)
33 1x4h_A RNA-binding protein 28; 99.9 5.7E-21 1.9E-25 128.9 11.7 86 65-152 10-101 (111)
34 2cpf_A RNA binding motif prote 99.9 4.7E-21 1.6E-25 126.6 10.9 83 68-152 3-88 (98)
35 1x5s_A Cold-inducible RNA-bind 99.9 3E-21 1E-25 128.4 10.0 85 67-153 9-93 (102)
36 1x5t_A Splicing factor 3B subu 99.9 2.6E-21 8.7E-26 127.4 9.4 82 69-152 4-86 (96)
37 2cph_A RNA binding motif prote 99.9 6.3E-21 2.2E-25 127.9 11.5 87 65-153 10-98 (107)
38 2dhg_A TRNA selenocysteine ass 99.9 6.4E-21 2.2E-25 127.3 11.2 85 66-153 5-91 (104)
39 3ns6_A Eukaryotic translation 99.9 1.4E-21 4.8E-26 130.0 7.8 82 68-151 4-92 (100)
40 1x4c_A Splicing factor, argini 99.9 1E-20 3.4E-25 127.4 12.0 78 67-153 12-94 (108)
41 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.2E-21 7.5E-26 129.1 8.5 84 67-152 9-92 (102)
42 1oo0_B CG8781-PA, drosophila Y 99.9 4.5E-21 1.5E-25 129.3 10.1 85 66-152 22-106 (110)
43 2dgp_A Bruno-like 4, RNA bindi 99.9 6.2E-21 2.1E-25 127.8 10.6 85 66-152 9-96 (106)
44 3ulh_A THO complex subunit 4; 99.8 1.1E-20 3.7E-25 126.8 11.3 83 65-150 24-106 (107)
45 2cpe_A RNA-binding protein EWS 99.8 6E-21 2E-25 129.3 10.0 86 66-153 11-104 (113)
46 2cqd_A RNA-binding region cont 99.8 1.9E-20 6.5E-25 127.5 12.5 85 65-152 12-96 (116)
47 2ywk_A Putative RNA-binding pr 99.8 1.1E-20 3.6E-25 124.2 10.8 83 66-151 12-94 (95)
48 1p1t_A Cleavage stimulation fa 99.8 3.1E-21 1.1E-25 128.8 8.3 85 68-154 6-90 (104)
49 2dnh_A Bruno-like 5, RNA bindi 99.8 2E-20 6.9E-25 125.0 12.1 82 68-152 13-97 (105)
50 3s7r_A Heterogeneous nuclear r 99.8 1.4E-20 4.7E-25 121.7 10.7 81 66-149 7-87 (87)
51 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-20 4.3E-25 123.1 10.6 84 66-153 4-87 (92)
52 2dgx_A KIAA0430 protein; RRM d 99.8 1.3E-20 4.3E-25 124.4 10.6 82 67-153 6-91 (96)
53 2kxn_B Transformer-2 protein h 99.8 9E-21 3.1E-25 131.7 10.4 86 65-152 41-126 (129)
54 2m2b_A RNA-binding protein 10; 99.8 3.3E-21 1.1E-25 134.1 8.1 84 67-153 20-109 (131)
55 3ucg_A Polyadenylate-binding p 99.8 1.3E-20 4.5E-25 122.2 10.5 80 70-152 6-85 (89)
56 2dis_A Unnamed protein product 99.8 1.8E-20 6E-25 126.1 11.1 85 68-154 6-94 (109)
57 2d9p_A Polyadenylate-binding p 99.8 1.8E-20 6.1E-25 125.0 10.9 83 66-152 11-93 (103)
58 4a8x_A RNA-binding protein wit 99.8 1E-20 3.5E-25 122.4 9.4 82 69-152 3-85 (88)
59 2dng_A Eukaryotic translation 99.8 2.5E-20 8.4E-25 124.3 11.5 83 66-152 11-93 (103)
60 2cqp_A RNA-binding protein 12; 99.8 8.7E-21 3E-25 125.3 9.2 83 68-152 13-95 (98)
61 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.7E-20 5.9E-25 135.4 11.0 86 65-152 67-152 (165)
62 2cq4_A RNA binding motif prote 99.8 6.3E-21 2.2E-25 129.5 8.1 81 68-151 23-103 (114)
63 2do0_A HnRNP M, heterogeneous 99.8 5.2E-20 1.8E-24 124.8 12.7 83 67-152 12-94 (114)
64 1sjq_A Polypyrimidine tract-bi 99.8 1.8E-20 6E-25 125.5 9.9 84 66-157 12-97 (105)
65 2dh8_A DAZ-associated protein 99.8 1.5E-20 5E-25 125.8 9.4 86 65-153 11-96 (105)
66 2mss_A Protein (musashi1); RNA 99.8 8.4E-21 2.9E-25 119.4 7.5 75 72-149 1-75 (75)
67 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.6E-20 2.3E-24 122.2 12.3 83 66-152 11-93 (103)
68 2kt5_A RNA and export factor-b 99.8 1.3E-19 4.6E-24 124.7 14.2 85 66-153 31-115 (124)
69 1x4b_A Heterogeneous nuclear r 99.8 1.6E-20 5.4E-25 127.9 9.3 82 68-152 25-106 (116)
70 1x4e_A RNA binding motif, sing 99.8 3E-21 1E-25 124.3 5.2 81 68-150 3-83 (85)
71 1s79_A Lupus LA protein; RRM, 99.8 2.6E-20 9E-25 124.6 9.8 80 68-151 9-88 (103)
72 2db1_A Heterogeneous nuclear r 99.8 6.8E-21 2.3E-25 130.4 7.1 86 67-156 14-102 (118)
73 1wi8_A EIF-4B, eukaryotic tran 99.8 3.8E-20 1.3E-24 123.6 10.6 82 67-152 12-94 (104)
74 2cq3_A RNA-binding protein 9; 99.8 8E-20 2.7E-24 121.8 12.2 85 65-153 10-94 (103)
75 2rs2_A Musashi-1, RNA-binding 99.8 2.8E-20 9.5E-25 125.6 9.6 84 66-152 21-104 (109)
76 2ki2_A SS-DNA binding protein 99.8 5.8E-21 2E-25 124.3 5.9 80 71-153 2-81 (90)
77 2cpy_A RNA-binding protein 12; 99.8 7.3E-21 2.5E-25 129.3 6.6 86 68-157 13-99 (114)
78 2ek1_A RNA-binding protein 12; 99.8 9.9E-21 3.4E-25 124.3 7.0 81 69-151 14-94 (95)
79 2err_A Ataxin-2-binding protei 99.8 2.9E-20 9.9E-25 125.4 9.3 85 65-153 24-108 (109)
80 2cqg_A TDP-43, TAR DNA-binding 99.8 1.6E-19 5.5E-24 120.3 12.8 82 67-152 12-93 (103)
81 1x5o_A RNA binding motif, sing 99.8 1.4E-19 4.7E-24 122.8 12.4 83 67-152 22-112 (114)
82 2kn4_A Immunoglobulin G-bindin 99.8 4.9E-20 1.7E-24 131.8 10.6 83 68-152 68-150 (158)
83 2cpi_A CCR4-NOT transcription 99.8 3.5E-20 1.2E-24 125.4 9.3 86 68-155 13-104 (111)
84 1wel_A RNA-binding protein 12; 99.8 6.7E-21 2.3E-25 131.3 5.7 84 67-153 22-105 (124)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.3E-19 4.4E-24 126.9 12.1 81 67-149 60-140 (140)
86 2dgw_A Probable RNA-binding pr 99.8 1.1E-19 3.6E-24 118.5 10.9 81 67-152 7-87 (91)
87 2jwn_A Embryonic polyadenylate 99.8 6.2E-20 2.1E-24 126.2 10.3 81 69-152 35-115 (124)
88 2lea_A Serine/arginine-rich sp 99.8 1.3E-20 4.6E-25 131.8 7.0 86 65-152 42-127 (135)
89 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-20 3.9E-25 125.5 6.3 84 66-153 15-99 (100)
90 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.5E-20 5.1E-25 118.7 6.5 76 71-149 1-76 (77)
91 2fc8_A NCL protein; structure 99.8 9.3E-20 3.2E-24 121.2 10.2 81 67-152 12-92 (102)
92 2nlw_A Eukaryotic translation 99.8 6E-20 2.1E-24 123.0 9.3 81 67-151 12-99 (105)
93 1x4a_A Splicing factor, argini 99.8 3.2E-19 1.1E-23 120.0 12.8 82 66-152 18-99 (109)
94 2cpx_A Hypothetical protein FL 99.8 5.1E-20 1.7E-24 125.0 8.7 84 67-152 22-105 (115)
95 2a3j_A U1 small nuclear ribonu 99.8 1.6E-19 5.6E-24 125.0 11.3 82 67-153 26-111 (127)
96 2lmi_A GRSF-1, G-rich sequence 99.8 1.2E-20 4.2E-25 126.8 5.2 84 66-153 7-93 (107)
97 1wg5_A Heterogeneous nuclear r 99.8 8.1E-20 2.8E-24 122.2 9.1 83 67-153 12-95 (104)
98 1fj7_A Nucleolin RBD1, protein 99.8 1.7E-20 5.8E-25 124.6 5.5 81 68-152 15-95 (101)
99 2wbr_A GW182, gawky, LD47780P; 99.8 8.4E-20 2.9E-24 117.6 8.5 73 70-150 7-79 (89)
100 2hgl_A HNRPF protein, heteroge 99.8 3.9E-20 1.3E-24 129.6 7.4 84 65-152 39-125 (136)
101 1wez_A HnRNP H', FTP-3, hetero 99.8 7.7E-20 2.6E-24 122.0 8.3 80 68-152 13-92 (102)
102 3beg_B Splicing factor, argini 99.8 7.2E-20 2.5E-24 124.7 7.9 76 68-152 14-94 (115)
103 2dnq_A RNA-binding protein 4B; 99.8 4.9E-19 1.7E-23 115.2 11.1 77 67-153 5-81 (90)
104 2fc9_A NCL protein; structure 99.8 2.8E-19 9.7E-24 118.7 10.1 81 66-152 11-91 (101)
105 2ad9_A Polypyrimidine tract-bi 99.8 2E-19 6.9E-24 123.0 9.4 81 68-156 29-111 (119)
106 2hvz_A Splicing factor, argini 99.8 1.6E-19 5.6E-24 119.8 8.8 76 71-153 1-76 (101)
107 2e5j_A Methenyltetrahydrofolat 99.8 4.1E-19 1.4E-23 117.2 10.6 78 68-152 17-94 (97)
108 2dgu_A Heterogeneous nuclear r 99.8 4.9E-19 1.7E-23 118.0 11.1 79 68-156 9-87 (103)
109 2ytc_A PRE-mRNA-splicing facto 99.8 6.9E-19 2.4E-23 113.1 11.3 78 65-150 7-85 (85)
110 1iqt_A AUF1, heterogeneous nuc 99.8 6.9E-20 2.3E-24 115.1 6.2 75 72-149 1-75 (75)
111 1nu4_A U1A RNA binding domain; 99.8 1.2E-19 4E-24 119.6 7.6 83 66-153 4-90 (97)
112 2krb_A Eukaryotic translation 99.8 8.9E-20 3E-24 116.5 6.8 73 71-147 2-81 (81)
113 3r27_A HnRNP L, heterogeneous 99.8 3.3E-19 1.1E-23 118.2 9.7 79 67-153 18-98 (100)
114 2cq1_A PTB-like protein L; RRM 99.8 5.1E-19 1.8E-23 117.8 10.6 80 68-155 13-94 (101)
115 1x4g_A Nucleolysin TIAR; struc 99.8 5.8E-19 2E-23 118.8 10.8 79 67-153 22-100 (109)
116 2la4_A Nuclear and cytoplasmic 99.8 3.3E-19 1.1E-23 118.3 9.2 76 68-151 25-100 (101)
117 1wex_A Hypothetical protein (r 99.8 6.1E-19 2.1E-23 118.1 10.2 78 68-153 13-92 (104)
118 1why_A Hypothetical protein ri 99.8 7.2E-19 2.5E-23 115.9 10.2 78 68-153 15-94 (97)
119 2f3j_A RNA and export factor b 99.8 5.9E-19 2E-23 128.8 10.7 86 66-154 84-169 (177)
120 2jvo_A Nucleolar protein 3; nu 99.8 6.5E-19 2.2E-23 118.7 9.9 77 66-152 27-103 (108)
121 2xnq_A Nuclear polyadenylated 99.8 1.1E-18 3.6E-23 115.4 10.7 76 67-152 19-95 (97)
122 2dnn_A RNA-binding protein 12; 99.8 3.8E-19 1.3E-23 120.1 8.6 79 68-151 14-92 (109)
123 4f02_A Polyadenylate-binding p 99.8 7.7E-19 2.6E-23 131.4 11.2 83 69-153 14-96 (213)
124 3lqv_A PRE-mRNA branch site pr 99.8 9.3E-19 3.2E-23 118.8 10.6 79 68-151 6-84 (115)
125 2jvr_A Nucleolar protein 3; RN 99.8 5E-19 1.7E-23 119.8 9.0 80 68-152 26-105 (111)
126 2cpj_A Non-POU domain-containi 99.8 7.5E-19 2.6E-23 116.2 9.6 79 67-153 12-90 (99)
127 2dha_A FLJ20171 protein; RRM d 99.8 1.2E-19 4E-24 125.1 5.6 82 68-153 21-106 (123)
128 1x4d_A Matrin 3; structural ge 99.8 5.2E-19 1.8E-23 117.9 8.4 76 68-151 13-91 (102)
129 2lcw_A RNA-binding protein FUS 99.7 9.7E-21 3.3E-25 129.0 0.0 84 68-153 5-96 (116)
130 1fjc_A Nucleolin RBD2, protein 99.8 4.4E-19 1.5E-23 116.6 8.0 79 67-152 13-91 (96)
131 3md3_A Nuclear and cytoplasmic 99.8 2.2E-18 7.4E-23 122.9 12.0 84 66-151 83-166 (166)
132 2e44_A Insulin-like growth fac 99.8 1.5E-18 5.1E-23 114.0 10.2 80 68-153 13-93 (96)
133 2kvi_A Nuclear polyadenylated 99.8 8.5E-19 2.9E-23 115.4 8.7 77 67-153 7-84 (96)
134 2xs2_A Deleted in azoospermia- 99.8 2.8E-19 9.6E-24 118.9 6.4 81 67-152 6-86 (102)
135 2dgt_A RNA-binding protein 30; 99.8 1.8E-18 6.3E-23 112.9 10.2 77 66-152 6-82 (92)
136 2dnp_A RNA-binding protein 14; 99.8 2.3E-18 8E-23 111.9 10.3 76 67-152 6-81 (90)
137 2cpd_A Apobec-1 stimulating pr 99.8 4.3E-18 1.5E-22 112.5 11.7 76 68-153 13-90 (99)
138 1fxl_A Paraneoplastic encephal 99.8 3.3E-18 1.1E-22 122.1 11.7 82 70-153 2-83 (167)
139 3egn_A RNA-binding protein 40; 99.8 2.3E-19 8E-24 126.4 5.4 81 67-152 42-130 (143)
140 3pgw_S U1-70K; protein-RNA com 99.8 1.9E-18 6.4E-23 142.2 11.6 86 67-154 99-184 (437)
141 2i2y_A Fusion protein consists 99.8 1.6E-18 5.5E-23 123.0 9.6 80 66-152 69-148 (150)
142 1b7f_A Protein (SXL-lethal pro 99.8 2.1E-18 7.2E-23 123.5 10.3 82 69-152 2-83 (168)
143 2yh0_A Splicing factor U2AF 65 99.8 1.4E-17 4.8E-22 122.3 14.1 85 67-153 111-195 (198)
144 1x4f_A Matrin 3; structural ge 99.8 1.7E-18 5.8E-23 117.2 8.4 79 67-153 22-103 (112)
145 1wf1_A RNA-binding protein RAL 99.8 1E-17 3.4E-22 112.9 12.2 74 68-151 25-99 (110)
146 2cqh_A IGF-II mRNA-binding pro 99.8 1.7E-18 5.9E-23 113.2 8.1 76 68-152 6-83 (93)
147 2qfj_A FBP-interacting repress 99.8 4.1E-18 1.4E-22 126.7 11.1 84 68-153 123-206 (216)
148 1sjr_A Polypyrimidine tract-bi 99.8 5.8E-18 2E-22 121.4 11.4 81 67-153 43-125 (164)
149 2hgm_A HNRPF protein, heteroge 99.8 1.2E-18 4.2E-23 120.3 7.4 79 68-151 40-120 (126)
150 2e5g_A U6 snRNA-specific termi 99.8 5.3E-18 1.8E-22 111.2 10.0 76 69-152 7-82 (94)
151 2j8a_A Histone-lysine N-methyl 99.8 1.6E-18 5.5E-23 118.9 7.7 81 71-153 3-97 (136)
152 1whx_A Hypothetical protein ri 99.8 2.3E-18 7.9E-23 116.5 8.1 76 69-152 9-84 (111)
153 2g4b_A Splicing factor U2AF 65 99.8 6.4E-18 2.2E-22 121.5 10.8 80 69-150 93-172 (172)
154 1x5p_A Negative elongation fac 99.8 1.7E-17 5.8E-22 109.3 11.6 75 68-152 13-87 (97)
155 4f02_A Polyadenylate-binding p 99.7 4.5E-18 1.5E-22 127.2 9.8 79 70-152 103-181 (213)
156 1l3k_A Heterogeneous nuclear r 99.7 9.4E-18 3.2E-22 123.0 11.1 85 65-152 8-92 (196)
157 2hgn_A Heterogeneous nuclear r 99.7 6.7E-19 2.3E-23 123.7 4.6 82 67-153 43-124 (139)
158 2cjk_A Nuclear polyadenylated 99.7 3.3E-18 1.1E-22 122.4 7.7 81 69-152 86-166 (167)
159 3zzy_A Polypyrimidine tract-bi 99.7 1.4E-17 4.9E-22 115.2 10.2 80 68-154 26-108 (130)
160 2cq2_A Hypothetical protein LO 99.7 1.3E-17 4.3E-22 113.1 9.1 78 67-152 22-106 (114)
161 1l3k_A Heterogeneous nuclear r 99.7 1.9E-17 6.6E-22 121.3 10.6 83 68-153 102-184 (196)
162 2e5i_A Heterogeneous nuclear r 99.7 9.3E-17 3.2E-21 110.5 13.1 79 68-154 23-104 (124)
163 3tyt_A Heterogeneous nuclear r 99.7 1.5E-17 5.2E-22 124.0 9.8 78 69-153 3-81 (205)
164 2qfj_A FBP-interacting repress 99.7 1.9E-17 6.6E-22 123.1 10.3 83 69-153 27-109 (216)
165 3md3_A Nuclear and cytoplasmic 99.7 2E-17 6.7E-22 117.9 9.5 80 71-153 1-80 (166)
166 1b7f_A Protein (SXL-lethal pro 99.7 3.7E-17 1.3E-21 116.9 10.8 80 68-149 87-168 (168)
167 1wg1_A KIAA1579 protein, homol 99.7 1.5E-17 5.2E-22 107.7 7.7 75 69-152 4-78 (88)
168 2diu_A KIAA0430 protein; struc 99.7 4.8E-17 1.7E-21 105.7 9.7 71 71-153 10-85 (96)
169 1fxl_A Paraneoplastic encephal 99.7 4.5E-17 1.6E-21 116.1 10.4 79 69-149 87-167 (167)
170 2dnl_A Cytoplasmic polyadenyla 99.7 1.1E-17 3.8E-22 113.5 6.8 78 68-150 6-86 (114)
171 3d2w_A TAR DNA-binding protein 99.7 3.3E-17 1.1E-21 106.5 7.7 75 67-152 8-84 (89)
172 3nmr_A Cugbp ELAV-like family 99.7 8.7E-17 3E-21 115.6 10.5 80 68-150 93-175 (175)
173 3nmr_A Cugbp ELAV-like family 99.7 8.1E-17 2.8E-21 115.8 10.0 81 69-151 2-87 (175)
174 2bz2_A Negative elongation fac 99.7 8.1E-17 2.8E-21 110.5 9.1 75 68-152 37-111 (121)
175 2voo_A Lupus LA protein; RNA-b 99.7 1.6E-16 5.4E-21 117.4 10.4 78 70-151 109-186 (193)
176 3pgw_A U1-A; protein-RNA compl 99.7 1.5E-16 5E-21 123.3 10.8 83 66-153 5-91 (282)
177 2cjk_A Nuclear polyadenylated 99.7 7.5E-17 2.6E-21 115.3 8.2 79 69-151 2-80 (167)
178 2hzc_A Splicing factor U2AF 65 99.7 2E-16 6.7E-21 101.8 8.9 73 69-148 5-86 (87)
179 2pe8_A Splicing factor 45; RRM 99.7 3.9E-16 1.3E-20 104.5 10.4 81 69-151 7-93 (105)
180 1fje_B Nucleolin RBD12, protei 99.7 1.1E-16 3.8E-21 115.4 8.1 78 68-152 97-174 (175)
181 2adc_A Polypyrimidine tract-bi 99.7 2.3E-16 7.9E-21 119.1 10.0 79 67-152 31-110 (229)
182 3pgw_A U1-A; protein-RNA compl 99.7 2.6E-15 8.9E-20 116.2 15.4 78 66-150 203-281 (282)
183 1wf0_A TDP-43, TAR DNA-binding 99.7 5.6E-17 1.9E-21 104.9 4.9 75 69-152 4-78 (88)
184 3smz_A Protein raver-1, ribonu 99.7 5.1E-16 1.8E-20 120.3 11.1 82 69-152 94-175 (284)
185 2ghp_A U4/U6 snRNA-associated 99.7 2.1E-16 7.2E-21 122.9 8.8 83 67-152 207-291 (292)
186 3u1l_A PRE-mRNA-splicing facto 99.7 2.8E-16 9.7E-21 119.3 9.0 79 67-153 131-230 (240)
187 3smz_A Protein raver-1, ribonu 99.6 5.5E-16 1.9E-20 120.1 9.8 83 68-153 182-265 (284)
188 1fje_B Nucleolin RBD12, protei 99.6 6.6E-17 2.2E-21 116.7 4.0 83 66-152 9-91 (175)
189 1qm9_A Polypyrimidine tract-bi 99.6 5E-16 1.7E-20 114.3 7.3 76 70-152 3-79 (198)
190 2dit_A HIV TAT specific factor 99.6 8.1E-15 2.8E-19 99.0 10.9 80 68-153 13-103 (112)
191 1jmt_A Splicing factor U2AF 35 99.6 4.6E-16 1.6E-20 104.0 4.7 72 75-149 20-103 (104)
192 3sde_A Paraspeckle component 1 99.6 3.8E-15 1.3E-19 114.5 9.6 78 66-151 18-95 (261)
193 3tyt_A Heterogeneous nuclear r 99.6 1.9E-15 6.4E-20 112.6 7.6 77 69-149 122-204 (205)
194 3sde_A Paraspeckle component 1 99.6 5.3E-15 1.8E-19 113.7 9.4 81 68-151 94-178 (261)
195 2yh0_A Splicing factor U2AF 65 99.6 6.5E-16 2.2E-20 113.3 3.2 77 69-152 3-88 (198)
196 3v4m_A Splicing factor U2AF 65 99.6 1.4E-14 4.8E-19 96.9 8.9 81 69-151 4-96 (105)
197 1qm9_A Polypyrimidine tract-bi 99.6 8.6E-15 2.9E-19 107.6 8.6 79 68-152 118-197 (198)
198 2ghp_A U4/U6 snRNA-associated 99.6 1.1E-14 3.9E-19 113.1 9.5 82 65-151 36-117 (292)
199 2adc_A Polypyrimidine tract-bi 99.6 1.6E-14 5.3E-19 109.0 9.8 79 68-152 149-228 (229)
200 2g4b_A Splicing factor U2AF 65 99.5 5.8E-14 2E-18 100.6 10.2 77 69-152 3-88 (172)
201 3ue2_A Poly(U)-binding-splicin 99.5 4.2E-14 1.4E-18 96.5 8.6 81 69-151 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.2E-13 1.4E-17 88.8 11.7 65 80-153 27-91 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.7E-13 5.7E-18 109.2 9.8 78 66-151 14-98 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.1E-12 3.7E-17 88.9 6.2 76 70-151 7-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 7.3E-12 2.5E-16 80.6 7.4 73 68-151 5-85 (91)
206 1owx_A Lupus LA protein, SS-B, 99.2 4.1E-11 1.4E-15 81.6 8.2 80 63-150 11-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 4.7E-11 1.6E-15 77.2 6.0 74 67-151 12-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 3.5E-10 1.2E-14 84.7 8.0 66 83-150 142-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 4.5E-07 1.6E-11 59.9 8.5 73 69-149 20-97 (117)
210 1wey_A Calcipressin 1; structu 97.9 5.3E-05 1.8E-09 49.6 8.0 75 70-152 5-84 (104)
211 1uw4_A UPF3X; nonsense mediate 97.7 0.00015 5.2E-09 46.5 7.3 70 71-142 2-73 (91)
212 2dhx_A Poly (ADP-ribose) polym 97.5 0.0017 6E-08 42.3 10.2 75 67-151 5-83 (104)
213 1whv_A Poly(A)-specific ribonu 97.0 0.0022 7.6E-08 41.4 6.3 53 71-134 17-69 (100)
214 1wwh_A Nucleoporin 35, nucleop 96.9 0.01 3.5E-07 39.7 9.0 74 67-150 21-95 (119)
215 2kn4_A Immunoglobulin G-bindin 96.8 0.0014 4.7E-08 45.7 4.4 35 101-137 2-36 (158)
216 2l08_A Regulator of nonsense t 96.7 0.0019 6.4E-08 41.7 3.9 71 70-142 9-81 (97)
217 3ctr_A Poly(A)-specific ribonu 96.5 0.003 1E-07 40.9 4.1 53 72-135 8-60 (101)
218 2i2y_A Fusion protein consists 96.4 0.0017 5.7E-08 45.0 2.6 40 111-151 10-50 (150)
219 3p3d_A Nucleoporin 53; structu 95.7 0.02 6.7E-07 39.0 5.3 78 70-151 7-98 (132)
220 3pq1_A Poly(A) RNA polymerase; 95.7 0.0069 2.4E-07 49.8 3.3 55 70-132 53-107 (464)
221 3d45_A Poly(A)-specific ribonu 86.7 1.8 6.3E-05 35.9 7.0 54 71-135 441-494 (507)
222 2g0c_A ATP-dependent RNA helic 73.8 2 6.8E-05 25.6 2.2 61 81-150 12-75 (76)
223 4e8u_A Putative uncharacterize 51.9 59 0.002 22.8 7.0 46 82-132 33-81 (172)
224 4eyt_A Telomerase associated p 37.3 75 0.0026 19.8 7.6 57 68-134 10-66 (129)
225 3fut_A Dimethyladenosine trans 31.3 50 0.0017 24.7 3.9 33 71-106 111-143 (271)
226 3ts2_A Protein LIN-28 homolog 27.8 12 0.00042 25.5 -0.1 10 113-122 20-29 (148)
227 3j21_T 50S ribosomal protein L 27.1 1.1E+02 0.0038 18.7 6.5 57 72-132 24-81 (86)
228 3uzu_A Ribosomal RNA small sub 24.8 25 0.00085 26.5 1.2 34 71-106 115-148 (279)
229 2i9x_A Putative septation prot 24.1 1.3E+02 0.0044 18.5 4.2 26 98-123 5-30 (87)
230 3lpe_A Putative transcription 22.5 76 0.0026 19.5 3.0 25 113-137 49-73 (92)
231 2cu1_A Mitogen-activated prote 22.4 1.5E+02 0.005 18.9 4.2 65 76-151 22-87 (103)
232 3tqs_A Ribosomal RNA small sub 21.9 34 0.0012 25.3 1.4 32 73-106 99-130 (255)
233 2ia9_A Putative septation prot 21.9 1.5E+02 0.005 18.8 4.2 26 98-123 5-30 (100)
234 2i9z_A Putative septation prot 21.4 1.5E+02 0.0053 18.9 4.2 26 98-123 5-30 (105)
235 2lfv_A Protein DAMX; cell divi 26.9 20 0.00068 23.0 0.0 62 70-137 25-87 (106)
236 3h7h_B Transcription elongatio 20.6 76 0.0026 20.2 2.7 25 113-137 50-74 (106)
237 3iz5_X 60S ribosomal protein L 20.0 2.1E+02 0.0072 19.5 5.0 54 72-129 90-144 (152)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=142.56 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=78.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
..+++|||+|||+.+++++|+++|++|| .|..++|++|+.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIG--EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3467899999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
+|+|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9975
No 2
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=150.91 Aligned_cols=101 Identities=45% Similarity=0.697 Sum_probs=89.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+||++.+++++|+++|+.||.+.|..++|+.|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 35679999999999999999999999994358999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhcCccccccc
Q psy8001 148 YPTRNVLYQFEAQNPLRSRSR 168 (172)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~ 168 (172)
++.+++..+++...+++...+
T Consensus 133 ~a~~~~~~~~e~~~rkr~~~~ 153 (156)
T 3n9u_C 133 PATRQNLSQFEAQARKRECVR 153 (156)
T ss_dssp ECCHHHHHHHHHHHHHHHC--
T ss_pred EcCCCcchhhhhhcccccCCC
Confidence 999988888887777665443
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=135.81 Aligned_cols=82 Identities=13% Similarity=0.144 Sum_probs=78.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
+..+|||+||++.+++++|+++|++|| .|..++|++|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYG--EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcC--CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9754
No 4
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.88 E-value=6.7e-22 Score=135.01 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=79.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++|| .|..+.|+.++ +|+++|||||+|.+.++|++|++.|||..|.|+.|+|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHG--PISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSS--CCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4557999999999999999999999999 89999999998 99999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q psy8001 148 YPTRNVL 154 (172)
Q Consensus 148 ~a~~~~~ 154 (172)
++++...
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9987553
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=128.46 Aligned_cols=83 Identities=24% Similarity=0.378 Sum_probs=76.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||..+++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3567999999999999999999999999 89999999998899999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++++
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99764
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=2.1e-21 Score=131.99 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=82.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|+.|| .|..|+|+.++.++.++|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445678999999999999999999999999 89999999998899999999999999999999999999999999999
Q ss_pred EEeccCCCCcc
Q psy8001 145 MVAYPTRNVLY 155 (172)
Q Consensus 145 ~v~~a~~~~~~ 155 (172)
+|.++++....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999875533
No 7
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=7.5e-22 Score=126.49 Aligned_cols=81 Identities=19% Similarity=0.409 Sum_probs=77.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
+++|||+|||+.+++++|+++|++|| .+..+.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTST--TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 36899999999999999999999999 9999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q psy8001 150 TRN 152 (172)
Q Consensus 150 ~~~ 152 (172)
+++
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 865
No 8
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=1.3e-22 Score=132.37 Aligned_cols=83 Identities=51% Similarity=0.930 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
++|||+|||+.+++++|+++|++||+..+..++++.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 58999999999999999999999994358899999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy8001 151 RNV 153 (172)
Q Consensus 151 ~~~ 153 (172)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 9
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.87 E-value=1.7e-22 Score=153.33 Aligned_cols=96 Identities=49% Similarity=0.871 Sum_probs=85.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+||++.+++++|+++|++||+..|..|+|++|+.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 56799999999999999999999999933489999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhcCccc
Q psy8001 149 PTRNVLYQFEAQNPLR 164 (172)
Q Consensus 149 a~~~~~~~~~~~~~~~ 164 (172)
+++....+++...+.+
T Consensus 147 a~~~~~~~~~~~~~~~ 162 (229)
T 3q2s_C 147 VNKQFLSQFEMQSRKT 162 (229)
T ss_dssp CCHHHHHHHHHHTCC-
T ss_pred CCCCccchhhhhcccc
Confidence 9987777766555543
No 10
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=130.17 Aligned_cols=84 Identities=20% Similarity=0.322 Sum_probs=78.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCC
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFID--------VKFFENASNGQSKGFCTVTLGSEESMSLVMERLPT 136 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~--------~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g 136 (172)
......++|||+|||+.+++++|+++|++|| .+.. ++++.++.+|+++|||||+|.+.++|++|++.|||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTS--CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445568999999999999999999999999 8888 99999998999999999999999999999999999
Q ss_pred ceeCCcccEEeccC
Q psy8001 137 LELHGRKPMVAYPT 150 (172)
Q Consensus 137 ~~l~g~~l~v~~a~ 150 (172)
..|.|+.|+|++|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999884
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=134.14 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=77.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc----eeCCc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL----ELHGR 142 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~----~l~g~ 142 (172)
.....+|||+|||+.+++++|+++|++||.+.+..|++++|+.+|+++|||||+|.+.++|++||+.|||. .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 34456899999999999999999999999334678999999999999999999999999999999999997 59999
Q ss_pred ccEEeccCC
Q psy8001 143 KPMVAYPTR 151 (172)
Q Consensus 143 ~l~v~~a~~ 151 (172)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999974
No 12
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=2.4e-21 Score=131.77 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=79.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..++|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFG--NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGS--CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567999999999999999999999999 899999999998999999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|++++++
T Consensus 99 V~~a~~~ 105 (115)
T 2cpz_A 99 VQLKRSK 105 (115)
T ss_dssp EECCCCS
T ss_pred EEEcCCC
Confidence 9999864
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.8e-21 Score=130.25 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=81.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..+.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAG--PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445668999999999999999999999999 99999999999899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
+|.++++..
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 999998653
No 14
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=2.7e-21 Score=132.02 Aligned_cols=84 Identities=19% Similarity=0.349 Sum_probs=78.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..++|+.++.+|+++|||||+|.+.++|++|++.|||..|+|++|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFG--NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSC--EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445678999999999999999999999999 99999999998899999999999999999999999999999999999
Q ss_pred EEeccC
Q psy8001 145 MVAYPT 150 (172)
Q Consensus 145 ~v~~a~ 150 (172)
+|++++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999884
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=1.3e-21 Score=125.91 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .+..+.++.++.++.++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccC--CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567999999999999999999999999 9999999999889999999999999999999999999999999999999
Q ss_pred eccC
Q psy8001 147 AYPT 150 (172)
Q Consensus 147 ~~a~ 150 (172)
++++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9985
No 16
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=2.9e-22 Score=131.16 Aligned_cols=82 Identities=27% Similarity=0.368 Sum_probs=75.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCC-CceeCCcccEEecc
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP-TLELHGRKPMVAYP 149 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~-g~~l~g~~l~v~~a 149 (172)
.+|||+|||+.+++++|+++|++||. .+..|+|++|+.+|.++|||||+|.+.++|++||+.|+ +..++|++|+|++|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~-~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGV-QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTC-CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCC-EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999993 37889999999999999999999999999999999874 56899999999999
Q ss_pred CCCC
Q psy8001 150 TRNV 153 (172)
Q Consensus 150 ~~~~ 153 (172)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8754
No 17
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=129.89 Aligned_cols=86 Identities=27% Similarity=0.422 Sum_probs=80.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||..+++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFG--RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTS--CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3344567999999999999999999999999 99999999999899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
+|++++++
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99999764
No 18
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.9e-21 Score=126.15 Aligned_cols=85 Identities=28% Similarity=0.429 Sum_probs=79.6
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..+.++.++.++.++|||||+|.+.++|++|++.|||..|+|++|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYG--PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTS--CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3345568999999999999999999999999 99999999999899999999999999999999999999999999999
Q ss_pred EEeccCC
Q psy8001 145 MVAYPTR 151 (172)
Q Consensus 145 ~v~~a~~ 151 (172)
+|++++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999874
No 19
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2e-21 Score=130.15 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=79.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.|+.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 344568999999999999999999999999 999999999998999999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.+++++
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9999754
No 20
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.86 E-value=2.4e-21 Score=127.70 Aligned_cols=85 Identities=21% Similarity=0.367 Sum_probs=80.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
.++|||+|||..+++++|+++|++|| .|..++++.++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVG--PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 46899999999999999999999999 9999999999989999999999999999999999999999999999999999
Q ss_pred CCCCcch
Q psy8001 150 TRNVLYQ 156 (172)
Q Consensus 150 ~~~~~~~ 156 (172)
+++....
T Consensus 80 ~~~~~~~ 86 (96)
T 2x1f_A 80 SNSDISG 86 (96)
T ss_dssp SCSSGGG
T ss_pred CCCCCCC
Confidence 8765443
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=127.09 Aligned_cols=82 Identities=27% Similarity=0.447 Sum_probs=78.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||+.+++++|+++|++|| .|..+.++.++.+++++|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFG--KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 457999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
++++
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9764
No 22
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-20 Score=131.05 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=81.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|+.|| .|..|+|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYG--PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHS--CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3445668999999999999999999999999 99999999999899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
+|+++++..
T Consensus 115 ~v~~a~~~~ 123 (139)
T 1u6f_A 115 KVALAASGH 123 (139)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999998653
No 23
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-21 Score=129.52 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=80.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFG--SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTC--CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 345668999999999999999999999999 999999999998999999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.+++++
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999764
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.1e-21 Score=127.75 Aligned_cols=84 Identities=18% Similarity=0.352 Sum_probs=78.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.|+.++.++.++|||||+|.+.++|++||+ ||+..|.|+.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFG--VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSS--CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 344567999999999999999999999999 99999999999899999999999999999999999 999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.+++++
T Consensus 83 V~~a~~~ 89 (99)
T 2dgs_A 83 VKRAEPR 89 (99)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999864
No 25
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.3e-21 Score=127.57 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=80.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .|..+.|+.++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYG--PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34568999999999999999999999999 9999999999989999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
.+++++.
T Consensus 83 ~~a~~~~ 89 (99)
T 1whw_A 83 LPSTIKK 89 (99)
T ss_dssp EECCCCS
T ss_pred EEcCCCc
Confidence 9998753
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=2.4e-21 Score=131.94 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=74.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
..+|||+|||+.+++++|+++|++|| .|..++|++++ +.++|||||+|.+.++|++||+.|||..|+|+.|+|.++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G--~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccC--CEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45899999999999999999999999 99999999985 457999999999999999999999999999999999999
Q ss_pred CCCC
Q psy8001 150 TRNV 153 (172)
Q Consensus 150 ~~~~ 153 (172)
+++.
T Consensus 81 ~~~~ 84 (115)
T 4f25_A 81 KSRK 84 (115)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8643
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=130.40 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=80.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..+.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYG--RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3445568999999999999999999999999 89999999999899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
+|.+++..
T Consensus 86 ~V~~a~~~ 93 (103)
T 2dnm_A 86 RVQVARYG 93 (103)
T ss_dssp EEEECSSC
T ss_pred EEEECCcC
Confidence 99999864
No 28
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=127.18 Aligned_cols=84 Identities=23% Similarity=0.403 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeE-EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc--
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFI-DVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK-- 143 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~-~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~-- 143 (172)
....++|||+|||+.+++++|+++|++|| .+. .++|+.++.++.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMG--ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTT--CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhC--CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 34567999999999999999999999999 888 9999999999999999999999999999999999999999999
Q ss_pred --cEEeccCCC
Q psy8001 144 --PMVAYPTRN 152 (172)
Q Consensus 144 --l~v~~a~~~ 152 (172)
|+|.++++.
T Consensus 84 ~~l~v~~a~~~ 94 (99)
T 2div_A 84 KRFKLNYATYS 94 (99)
T ss_dssp EECCEEETTCC
T ss_pred eeEEEeecCCC
Confidence 999999764
No 29
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.5e-21 Score=134.78 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=80.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..|.|+.++.++.++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3445578999999999999999999999999 99999999999899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
.|+++++..
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999998644
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=126.74 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .|..+.++.++.++.++|||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYG--KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTS--CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34567999999999999999999999999 8999999999988999999999999999999999999999999999999
Q ss_pred eccC
Q psy8001 147 AYPT 150 (172)
Q Consensus 147 ~~a~ 150 (172)
++|+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 31
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=4.8e-21 Score=136.93 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=79.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++|| .|..|.|+.++.++.++|||||+|.+.++|++||+.||+..|.|+.|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSG--DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567999999999999999999999999 89999999999899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy8001 148 YPTRNV 153 (172)
Q Consensus 148 ~a~~~~ 153 (172)
++++..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 998643
No 32
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=6e-21 Score=126.60 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=79.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.|+.++ +|+++|||||+|.+.++|++|++.|||..|.|+.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHG--TVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567999999999999999999999999 89999999998 999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|.+++++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998653
No 33
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.7e-21 Score=128.91 Aligned_cols=86 Identities=17% Similarity=0.318 Sum_probs=80.4
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCC------Cce
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP------TLE 138 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~------g~~ 138 (172)
......++|||+|||+.+++++|+++|.+|| .|..|.|++++.++.++|||||+|.+.++|++||+.|| +..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFG--DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 3445567999999999999999999999999 99999999999899999999999999999999999999 999
Q ss_pred eCCcccEEeccCCC
Q psy8001 139 LHGRKPMVAYPTRN 152 (172)
Q Consensus 139 l~g~~l~v~~a~~~ 152 (172)
|+|+.|+|.+++++
T Consensus 88 ~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 88 LDGRQLKVDLAVTR 101 (111)
T ss_dssp SSSCEEEEECCCCC
T ss_pred EcCEEEEEEECCCC
Confidence 99999999999864
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.7e-21 Score=126.63 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=77.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCC---CCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENAS---NGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~---~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
.+.++|||+|||+.+++++|+++|++|| .|..+.|+.++. ++.++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVG--AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3567999999999999999999999999 899999999886 56899999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
+|+++++.
T Consensus 81 ~V~~a~~~ 88 (98)
T 2cpf_A 81 EVRISERA 88 (98)
T ss_dssp EEECSSCS
T ss_pred EEEEccCC
Confidence 99999764
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3e-21 Score=128.44 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=79.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .|..+.|+.++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHS--CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567999999999999999999999999 8999999999989999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
.++++..
T Consensus 87 ~~a~~~~ 93 (102)
T 1x5s_A 87 DQAGKSS 93 (102)
T ss_dssp EEEECCC
T ss_pred EECCCCC
Confidence 9997643
No 36
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-21 Score=127.36 Aligned_cols=82 Identities=21% Similarity=0.373 Sum_probs=78.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDV-KFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~-~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
..++|||+|||+.+++++|+++|++|| .|..+ +|+.++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFG--VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS--CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 567999999999999999999999999 89899 999998899999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++++
T Consensus 82 ~a~~~ 86 (96)
T 1x5t_A 82 YAFKK 86 (96)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 99764
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=127.87 Aligned_cols=87 Identities=15% Similarity=0.373 Sum_probs=80.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEec-CCCCCcccEEEEEeCCHHHHHHHHHHC-CCceeCCc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFEN-ASNGQSKGFCTVTLGSEESMSLVMERL-PTLELHGR 142 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~-~~~g~~~g~afv~f~~~~~a~~al~~l-~g~~l~g~ 142 (172)
......++|||+|||+.+++++|+++|++|| .|..|.|+.+ +.++.++|||||+|.+.++|++||+.| |+..|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFG--ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccC--CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3345568999999999999999999999999 9999999998 789999999999999999999999999 99999999
Q ss_pred ccEEeccCCCC
Q psy8001 143 KPMVAYPTRNV 153 (172)
Q Consensus 143 ~l~v~~a~~~~ 153 (172)
.|+|+++++..
T Consensus 88 ~l~v~~a~~~~ 98 (107)
T 2cph_A 88 RLVLEWADSEV 98 (107)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 99999998643
No 38
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.4e-21 Score=127.28 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=79.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCce-eCCcc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLE-LHGRK 143 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~-l~g~~ 143 (172)
.....++|||+|||+.+++++|+++|++ || .|..+.|+.++ +|.++|||||+|.+.++|++||+.|||.. |+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G--~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYP--SCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCT--TEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCC--CeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 3445689999999999999999999999 99 99999999999 99999999999999999999999999999 99999
Q ss_pred cEEeccCCCC
Q psy8001 144 PMVAYPTRNV 153 (172)
Q Consensus 144 l~v~~a~~~~ 153 (172)
|+|+++++..
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 9999997643
No 39
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=1.4e-21 Score=129.96 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=77.9
Q ss_pred CCcceEEEcCCCC------CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 68 SSHCNLYVGNLTW------WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 68 ~~~~~v~V~nL~~------~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
...++|||+|||+ .+++++|+++|++|| .|..++|++++.+|+++|||||+|.+.++|++||+.|||..|.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G--~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG--KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC--CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3467899999999 999999999999999 99999999999899999999999999999999999999999999
Q ss_pred -cccEEeccCC
Q psy8001 142 -RKPMVAYPTR 151 (172)
Q Consensus 142 -~~l~v~~a~~ 151 (172)
+.|+|.++.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999964
No 40
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=127.43 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC-----
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG----- 141 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g----- 141 (172)
....++|||+|||+.+++++|+++|.+|| .|..+.|+.+ |||||+|.+.++|++||+.|||..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34568999999999999999999999999 8999999775 899999999999999999999999999
Q ss_pred cccEEeccCCCC
Q psy8001 142 RKPMVAYPTRNV 153 (172)
Q Consensus 142 ~~l~v~~a~~~~ 153 (172)
+.|+|++++++.
T Consensus 83 ~~i~V~~a~~~~ 94 (108)
T 1x4c_A 83 AYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEESSCCS
T ss_pred eEEEEEeCCCCC
Confidence 999999998743
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-21 Score=129.13 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=79.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .|..+.|+.++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTS--CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567999999999999999999999999 8999999999889999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.++++.
T Consensus 87 ~~a~~~ 92 (102)
T 2cqb_A 87 NLAKPM 92 (102)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999864
No 42
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.85 E-value=4.5e-21 Score=129.34 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=79.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345668999999999999999999999999 999999999998999999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.+++++
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 9999753
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=6.2e-21 Score=127.77 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=79.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee---CCc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL---HGR 142 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l---~g~ 142 (172)
.....++|||+|||+.+++++|+++|++|| .|..++|+.++.+++++|||||+|.+.++|++|++.|||..+ .|+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHS--CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 344567999999999999999999999999 899999999998999999999999999999999999999988 899
Q ss_pred ccEEeccCCC
Q psy8001 143 KPMVAYPTRN 152 (172)
Q Consensus 143 ~l~v~~a~~~ 152 (172)
.|+|+++++.
T Consensus 87 ~l~v~~a~~~ 96 (106)
T 2dgp_A 87 PIQVKPADSE 96 (106)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEECCcc
Confidence 9999999764
No 44
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=1.1e-20 Score=126.81 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=78.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..+.|+.++ +|+++|||||+|.+.++|++||+.|||..|+|+.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445678999999999999999999999999 89999999999 99999999999999999999999999999999999
Q ss_pred EEeccC
Q psy8001 145 MVAYPT 150 (172)
Q Consensus 145 ~v~~a~ 150 (172)
+|++++
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 45
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6e-21 Score=129.33 Aligned_cols=86 Identities=20% Similarity=0.292 Sum_probs=79.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeE--------EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFI--------DVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~--------~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
.....++|||+|||+.+++++|+++|++|| .|. .++|+.++.+++++|||||+|.+.++|++||+.|||.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCG--VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTS--CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 345668999999999999999999999999 787 6999999889999999999999999999999999999
Q ss_pred eeCCcccEEeccCCCC
Q psy8001 138 ELHGRKPMVAYPTRNV 153 (172)
Q Consensus 138 ~l~g~~l~v~~a~~~~ 153 (172)
.|.|+.|+|.++++..
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKP 104 (113)
T ss_dssp EETTEECEEECSSCCC
T ss_pred ccCCCEEEEEECCCCC
Confidence 9999999999998653
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-20 Score=127.45 Aligned_cols=85 Identities=20% Similarity=0.379 Sum_probs=79.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..++|+.++.+++++|||||+|.+.++|++||+.|++ .|.|+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFG--DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTS--CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 3445668999999999999999999999999 899999999998999999999999999999999999998 8999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
+|++++..
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999764
No 47
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=124.15 Aligned_cols=83 Identities=24% Similarity=0.344 Sum_probs=77.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..++|+.++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAG--PLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 344568999999999999999999999999 89999999998 489999999999999999999999999999999999
Q ss_pred EeccCC
Q psy8001 146 VAYPTR 151 (172)
Q Consensus 146 v~~a~~ 151 (172)
|++++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 48
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=128.76 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=79.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVG--PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTS--CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcC--CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3457899999999999999999999999 89999999999899999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q psy8001 148 YPTRNVL 154 (172)
Q Consensus 148 ~a~~~~~ 154 (172)
++++...
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9987543
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=2e-20 Score=125.04 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=77.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC---ccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG---RKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g---~~l 144 (172)
...++|||+|||+.+++++|+++|++|| .|..+.|+.++ +|.++|||||+|.+.++|++||+.|||..+.| +.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFG--VIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 4567999999999999999999999999 89999999998 89999999999999999999999999999998 999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
+|.++++.
T Consensus 90 ~V~~a~~~ 97 (105)
T 2dnh_A 90 VVKFADTD 97 (105)
T ss_dssp EEEESCSS
T ss_pred EEEECccC
Confidence 99999764
No 50
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.4e-20 Score=121.72 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=75.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..++++.++.+|+++|||||+|.+.++|++|++ +++..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFG--EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 345667999999999999999999999999 99999999999899999999999999999999997 588999999999
Q ss_pred Eecc
Q psy8001 146 VAYP 149 (172)
Q Consensus 146 v~~a 149 (172)
|++|
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 51
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=1.3e-20 Score=123.08 Aligned_cols=84 Identities=25% Similarity=0.308 Sum_probs=77.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.++.+ ++.++|||||+|.+.++|++|++.|||..|+|+.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECG--HVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTS--CEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344668999999999999999999999999 8999999874 788999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|+++++..
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998643
No 52
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=124.37 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMS----DAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~----~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
..++++|||+|||+.+++++|+ ++|++|| .|..++|+.++.+ +|||||+|.+.++|++||+.|||..|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G--~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHG--KVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccC--cEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3456799999999999999999 9999999 9999999998755 88999999999999999999999999999
Q ss_pred ccEEeccCCCC
Q psy8001 143 KPMVAYPTRNV 153 (172)
Q Consensus 143 ~l~v~~a~~~~ 153 (172)
+|+|+++++..
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 99999998653
No 53
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=9e-21 Score=131.74 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=80.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
....+.++|||+|||+.+++++|+++|++|| .|..+.|++++.++.++|||||+|.+.++|++||+.|||..|.|++|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYG--PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTS--CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445668999999999999999999999999 99999999999899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
+|++++++
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99999764
No 54
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-21 Score=134.12 Aligned_cols=84 Identities=14% Similarity=0.270 Sum_probs=78.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEE--EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc----eeC
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFID--VKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL----ELH 140 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~--~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~----~l~ 140 (172)
.....+|||+|||+.+++++|+++|.+|| .|.. |+|++|+.+|+++|||||+|.+. +|++||+.|||. .|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G--~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYA--VLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGC--CCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567999999999999999999999999 7866 99999999999999999999999 999999999999 999
Q ss_pred CcccEEeccCCCC
Q psy8001 141 GRKPMVAYPTRNV 153 (172)
Q Consensus 141 g~~l~v~~a~~~~ 153 (172)
|+.|+|+++++..
T Consensus 97 gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GKTINVEFAKGSK 109 (131)
T ss_dssp GCCCCCEECCCSC
T ss_pred CEEEEEEECCCCC
Confidence 9999999998754
No 55
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=1.3e-20 Score=122.19 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=76.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
.++|||+|||+.+++++|+++|++|| .|..+.++.++.++.++|||||+|.+.++|++|+ .|||..+.|+.|+|.++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG--SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC--CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 46899999999999999999999999 9999999999989999999999999999999999 89999999999999999
Q ss_pred CCC
Q psy8001 150 TRN 152 (172)
Q Consensus 150 ~~~ 152 (172)
++.
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 763
No 56
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=126.15 Aligned_cols=85 Identities=19% Similarity=0.438 Sum_probs=78.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCC-eEEEEEE-ecCCCCCcccEEEEEeCCHHHHHHHHHHCC--CceeCCcc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPD-FIDVKFF-ENASNGQSKGFCTVTLGSEESMSLVMERLP--TLELHGRK 143 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~-~~~~~i~-~~~~~g~~~g~afv~f~~~~~a~~al~~l~--g~~l~g~~ 143 (172)
...++|||+|||+.+++++|+++|.+|| . |..+.++ .++.+|.++|||||+|.+.++|+.|++.|| +..+.|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVT--EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHS--TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhc--CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 4568999999999999999999999999 8 9999998 788888999999999999999999999996 58999999
Q ss_pred cEEeccCCCCc
Q psy8001 144 PMVAYPTRNVL 154 (172)
Q Consensus 144 l~v~~a~~~~~ 154 (172)
|+|.++++...
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=124.97 Aligned_cols=83 Identities=25% Similarity=0.314 Sum_probs=77.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.|+.+ ++.++|||||+|.+.++|++||+.|||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFG--TITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTS--CEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 344667999999999999999999999999 8999999988 889999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|++++++
T Consensus 87 V~~a~~~ 93 (103)
T 2d9p_A 87 VALAQRK 93 (103)
T ss_dssp EEECSSC
T ss_pred EEEeccc
Confidence 9999864
No 58
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=122.39 Aligned_cols=82 Identities=12% Similarity=0.197 Sum_probs=76.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCC-cccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ-SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~-~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
..++|||+|||+.+++++|+++|++|| .+..+.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYG--KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 356899999999999999999999999 999999999987766 89999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
++.+.
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99754
No 59
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.5e-20 Score=124.34 Aligned_cols=83 Identities=20% Similarity=0.367 Sum_probs=77.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| |..+.|+.++.+++++|||||+|.+.++|++|| .|||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS---IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC---EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC---ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 344568999999999999999999999998 889999999989999999999999999999999 7999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.++++.
T Consensus 87 V~~a~~~ 93 (103)
T 2dng_A 87 VDIAEGR 93 (103)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999764
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=8.7e-21 Score=125.32 Aligned_cols=83 Identities=12% Similarity=0.112 Sum_probs=77.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|.+|| .+..+.++.++.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQ--VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSC--CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC--CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4457999999999999999999999999 78778888888899999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++.+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 99754
No 61
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.84 E-value=1.7e-20 Score=135.37 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=80.0
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+.+|++|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3445678999999999999999999999999 99999999999899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
.|.++.+.
T Consensus 145 ~V~~a~~~ 152 (165)
T 1rk8_A 145 QVDWCFVK 152 (165)
T ss_dssp EEEESEEC
T ss_pred EEEEecCC
Confidence 99999764
No 62
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.3e-21 Score=129.46 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|+.|| .|..+.|+.++.+|.++|||||+|.+.++|++|| .|||..|+|+.|+|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVG--KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 4567999999999999999999999999 9999999999988999999999999999999999 899999999999999
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
++++
T Consensus 100 ~a~~ 103 (114)
T 2cq4_A 100 ASQA 103 (114)
T ss_dssp EHHH
T ss_pred ecCC
Confidence 9864
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=5.2e-20 Score=124.76 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|.+|| .|..+.|+.++ +++++|||||+|.+.++|++||+.|||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAG--VVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 34567999999999999999999999999 99999999998 6999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
++++..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 999753
No 64
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=125.45 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCC--ceeCCcc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPT--LELHGRK 143 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g--~~l~g~~ 143 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.|+.+ +|||||+|.+.++|+.|++.|++ ..|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG--~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHC--CEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 344567999999999999999999999999 9999999864 69999999999999999998864 7899999
Q ss_pred cEEeccCCCCcchh
Q psy8001 144 PMVAYPTRNVLYQF 157 (172)
Q Consensus 144 l~v~~a~~~~~~~~ 157 (172)
|+|.+++++.....
T Consensus 84 l~V~~A~~~~~~~~ 97 (105)
T 1sjq_A 84 IYIQFSNHKELKTD 97 (105)
T ss_dssp CCBCCCSSSSCCCT
T ss_pred EEEEEcCCCCCCcc
Confidence 99999987654443
No 65
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=125.78 Aligned_cols=86 Identities=22% Similarity=0.356 Sum_probs=79.9
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..+.|+.++.++.++|||||+|.+.++|++||+. |+..|.|+.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYG--EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTS--CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 3445668999999999999999999999999 999999999998999999999999999999999998 9999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
.|++++++.
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 999998653
No 66
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=8.4e-21 Score=119.42 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
+|||+|||+.+++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|++|++ |||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFG--KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTS--CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999 89999999999899999999999999999999998 9999999999999976
No 67
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.6e-20 Score=122.17 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=76.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..|.|+.++.+ ++|||||+|.+.++|++|++.|||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIG--PCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcC--CEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 344567999999999999999999999999 9999999998633 689999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.+++++
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 9999864
No 68
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=1.3e-19 Score=124.66 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=79.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..++|+.++ +|+++|||||+|.+.++|++|++.|||..|+|+.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTS--CCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345668999999999999999999999999 89999999999 999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|++|....
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 99998754
No 69
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=127.87 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=77.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|..|| .|..+.|+.++.++.++|||||+|.+.++|++||+. ++..|+|+.|+|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSC--CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 4467999999999999999999999999 899999999998999999999999999999999997 9999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++++
T Consensus 102 ~a~~~ 106 (116)
T 1x4b_A 102 RAVAR 106 (116)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 99764
No 70
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-21 Score=124.34 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=76.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
.+.++|||+|||+.+++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|++|++.|||..|.|+.|+|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYG--KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTS--CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeec
Confidence 3567999999999999999999999999 99999999999899999999999999999999999999999999999988
Q ss_pred ccC
Q psy8001 148 YPT 150 (172)
Q Consensus 148 ~a~ 150 (172)
+++
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 71
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.6e-20 Score=124.56 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=75.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
....+|||+|||+.+++++|+++|++|| .|..|.|++++. |.++|||||+|.+.++|+.||. ++|..|+|+.|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G--~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKG--QVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSS--CEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcC--CEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 3457999999999999999999999999 999999999986 9999999999999999999999 89999999999999
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8853
No 72
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.83 E-value=6.8e-21 Score=130.35 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=77.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCC---eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPD---FIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~---~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
....++|||+|||+.+++++|+++|+.|| . |..|+|+.++. |+++|||||+|.+.++|++||+ ||+..|+|+.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCT--IHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSC--BTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcC--CccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34567999999999999999999999999 6 78999999985 9999999999999999999999 9999999999
Q ss_pred cEEeccCCCCcch
Q psy8001 144 PMVAYPTRNVLYQ 156 (172)
Q Consensus 144 l~v~~a~~~~~~~ 156 (172)
|+|.++......+
T Consensus 90 i~V~~a~~~~~~~ 102 (118)
T 2db1_A 90 IEVFKSHRTEMDW 102 (118)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
Confidence 9999997654333
No 73
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=123.63 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=76.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASN-GQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~-g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
....++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ ++++|||||+|.+.++|++|| .||+..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC---EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC---ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 34558999999999999999999999999 889999999887 899999999999999999999 8999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|++++++
T Consensus 88 V~~a~~~ 94 (104)
T 1wi8_A 88 VDVADQA 94 (104)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9999864
No 74
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8e-20 Score=121.76 Aligned_cols=85 Identities=27% Similarity=0.356 Sum_probs=77.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..+.|+.++. .++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTS--CEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3344567999999999999999999999999 999999998863 389999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
+|.+++++.
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999998753
No 75
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=2.8e-20 Score=125.56 Aligned_cols=84 Identities=20% Similarity=0.387 Sum_probs=75.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|+.|| .|..+.|+.++.+|.++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFG--EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccC--CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 344567999999999999999999999999 9999999999989999999999999999999999975 5999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.++.++
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9999764
No 76
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=5.8e-21 Score=124.26 Aligned_cols=80 Identities=25% Similarity=0.426 Sum_probs=73.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
++|||+|||..+++++|+++|++|| .+..+.+++++.+|.++|||||+|.+.+ |++|+..|||..++|+.|+|++|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG--KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT--CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC--CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 5799999999999999999999999 8999999999989999999999999999 999999999999999999999998
Q ss_pred CCC
Q psy8001 151 RNV 153 (172)
Q Consensus 151 ~~~ 153 (172)
+..
T Consensus 79 ~~~ 81 (90)
T 2ki2_A 79 PKK 81 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 77
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.3e-21 Score=129.34 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=78.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCe-EEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDF-IDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~-~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...++|||+|||+.+++++|+++|+.|| .+ ..|+|++++ +|+++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g--~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIP--VDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSC--CCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCC--CcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 4567999999999999999999999999 78 789999999 999999999999999999999996 999999999999
Q ss_pred eccCCCCcchh
Q psy8001 147 AYPTRNVLYQF 157 (172)
Q Consensus 147 ~~a~~~~~~~~ 157 (172)
.++.+......
T Consensus 89 ~~a~~~~~~~~ 99 (114)
T 2cpy_A 89 HVVTLEDMREI 99 (114)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 99987554444
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=9.9e-21 Score=124.29 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=75.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||+.+++++|+++|.+|| .+..+.++.++.+++++|||||+|.+.++|++||+.|||..|.|+.|+|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQ--VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSC--BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 357999999999999999999999999 888888888888999999999999999999999999999999999999998
Q ss_pred cCC
Q psy8001 149 PTR 151 (172)
Q Consensus 149 a~~ 151 (172)
++.
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 863
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=125.43 Aligned_cols=85 Identities=27% Similarity=0.343 Sum_probs=77.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||..+++++|+++|++|| .|..+.++.++ +.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTC--CCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcC--CEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445667999999999999999999999999 89999999885 4489999999999999999999999999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
+|++++++.
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999998753
No 80
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-19 Score=120.27 Aligned_cols=82 Identities=27% Similarity=0.385 Sum_probs=76.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|.+|| .|..+.|+.++.+|.++|||||+|.+.++|++||+ ++..|+|+.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFG--EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcC--CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34567899999999999999999999999 99999999999899999999999999999999999 578999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.++.++
T Consensus 88 ~~a~~~ 93 (103)
T 2cqg_A 88 KLPNSK 93 (103)
T ss_dssp ECCCTT
T ss_pred EecCCC
Confidence 999764
No 81
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=122.76 Aligned_cols=83 Identities=17% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee-------
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL------- 139 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l------- 139 (172)
....++|||+|||+.+++++|+++|.+|| .|..++|+.++ ++.++|||||+|.+.++|++||+.|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFG--QVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 34567999999999999999999999999 89999999999 999999999999999999999999999999
Q ss_pred -CCcccEEeccCCC
Q psy8001 140 -HGRKPMVAYPTRN 152 (172)
Q Consensus 140 -~g~~l~v~~a~~~ 152 (172)
.++.|.|.++++.
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5777999999754
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.82 E-value=4.9e-20 Score=131.75 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=79.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++|| .|..+.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|+|.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567999999999999999999999999 99999999999899999999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
++++.
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99764
No 83
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=125.40 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=77.7
Q ss_pred CCcceEEEcCCCCCCCHHHHH---HHHHhcCCCCeEEEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 68 SSHCNLYVGNLTWWTTEADMS---DAIRSIGVPDFIDVKFFENASNG---QSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~---~~f~~~g~~~~~~~~i~~~~~~g---~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
...++|||+|||+.+++++|+ ++|++|| .|..+.|+.++.++ .++|||||+|.+.++|++||+.|||..|+|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G--~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFG--KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTS--CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccC--CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 345799999999999999999 9999999 99999999987654 456999999999999999999999999999
Q ss_pred cccEEeccCCCCcc
Q psy8001 142 RKPMVAYPTRNVLY 155 (172)
Q Consensus 142 ~~l~v~~a~~~~~~ 155 (172)
+.|+|.+++++...
T Consensus 91 r~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 91 RTLKASLGTTKYCS 104 (111)
T ss_dssp EEEEEESCCCCSCS
T ss_pred EEEEEEeccccccc
Confidence 99999999876533
No 84
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-21 Score=131.32 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|..|| .|..+.++.+..+|+++|||||+|.+.++|++||+ |||..|+|+.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLD--IVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSC--BCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 44568999999999999999999999999 77776666666799999999999999999999999 9999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
.++.+..
T Consensus 99 ~~a~~~~ 105 (124)
T 1wel_A 99 HPITKKG 105 (124)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997644
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=126.87 Aligned_cols=81 Identities=22% Similarity=0.342 Sum_probs=76.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
.....+|||+|||..+++++|+++|++|| .|..++++.++.+++++|||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGS--CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcC--CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567999999999999999999999999 9999999999889999999999999999999999999999999999999
Q ss_pred ecc
Q psy8001 147 AYP 149 (172)
Q Consensus 147 ~~a 149 (172)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 86
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=118.53 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=74.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|+.|+ +..++|+++ .+|+++|||||+|.+.++|++||+ |||..|+|+.|.|
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~~---i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPLK---PVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTSC---CSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhCC---ceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 34567999999999999999999999995 778999998 589999999999999999999999 9999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.+++++
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 999765
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.82 E-value=6.2e-20 Score=126.23 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=76.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||+.+++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|++|| .|||..|+|+.|+|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCG--SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTS--CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 457999999999999999999999999 9999999999889999999999999999999999 7999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
++..
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9753
No 88
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.3e-20 Score=131.84 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=80.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|++|| .|..+.|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGS--CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445567999999999999999999999999 89999999999899999999999999999999999999999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
+|+++++.
T Consensus 120 ~V~~a~~~ 127 (135)
T 2lea_A 120 RVQMARYG 127 (135)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999764
No 89
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=125.46 Aligned_cols=84 Identities=19% Similarity=0.278 Sum_probs=74.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENA-SNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~-~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
.....++|||+|||+.+++++|+++|++|| +..+.|+.++ .+|+++|||||+|.+.++|++|| .|||..|+|+.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC---EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 344568999999999999999999999999 8899999988 68999999999999999999999 799999999999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
+|+++++++
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998653
No 90
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=118.73 Aligned_cols=76 Identities=20% Similarity=0.424 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
++|||+|||+.+++++|+++|++|| .+..+.++.++.+|+++|||||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFG--EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTS--CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999 89999999999899999999999999999999999999 9999999999986
No 91
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.3e-20 Score=121.17 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=74.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|+.++ .+.++.++.++.++|||||+|.+.++|++||+.|||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~-----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV-----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS-----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe-----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44567999999999999999999999776 6778888889999999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
++++++
T Consensus 87 ~~a~~~ 92 (102)
T 2fc8_A 87 DWAKPK 92 (102)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999864
No 92
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=123.03 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCCCC------CHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC
Q psy8001 67 SSSHCNLYVGNLTWWT------TEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH 140 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~------~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~ 140 (172)
....++|||+|||+.+ ++++|+++|++|| .|..+.|+ +.+|+++|||||+|.+.++|++||+.|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--KITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS--CEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC--CEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3446799999999999 7899999999999 89999987 358899999999999999999999999999999
Q ss_pred Cc-ccEEeccCC
Q psy8001 141 GR-KPMVAYPTR 151 (172)
Q Consensus 141 g~-~l~v~~a~~ 151 (172)
|+ .|+|.++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 98 999999964
No 93
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-19 Score=120.04 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=74.3
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.|.. ++.++|||||+|.+.++|++||+.||+..|.|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYG--AIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567999999999999999999999999 899998855 455799999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|+++++.
T Consensus 93 V~~a~~~ 99 (109)
T 1x4a_A 93 VEFPRSG 99 (109)
T ss_dssp EECCCCC
T ss_pred EEEcccC
Confidence 9999764
No 94
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.1e-20 Score=125.00 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|.+|| .|..+.+..+..+++++|||||+|.+.++|++||+.|||..|.|+.|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQ--EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHH--HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567999999999999999999999999 6633222222227889999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.++++.
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999864
No 95
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=125.02 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMS----DAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~----~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
..+.++|||+||++.+++++|+ ++|++|| .|..|.+.. +++++|||||+|.+.++|+.|++.|||..|.|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G--~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQG--DILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCC--CeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 3456799999999999999876 6999999 898887643 678999999999999999999999999999999
Q ss_pred ccEEeccCCCC
Q psy8001 143 KPMVAYPTRNV 153 (172)
Q Consensus 143 ~l~v~~a~~~~ 153 (172)
.|+|.+++.+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999998654
No 96
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=126.84 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=77.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCC---eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPD---FIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~---~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
.....++|||+|||+.+++++|+++|+.|| . +..|+|+.++. |+++|||||+|.+.++|++||+ ||+..|+|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g--~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCR--IRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSC--BTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcC--CcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 345678999999999999999999999998 6 78999999986 9999999999999999999999 999999999
Q ss_pred ccEEeccCCCC
Q psy8001 143 KPMVAYPTRNV 153 (172)
Q Consensus 143 ~l~v~~a~~~~ 153 (172)
.|+|.++.+..
T Consensus 83 ~i~V~~a~~~~ 93 (107)
T 2lmi_A 83 YVEVYEINNED 93 (107)
T ss_dssp CCCCEECCHHH
T ss_pred EEEEEECCHHH
Confidence 99999997643
No 97
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.1e-20 Score=122.20 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=75.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEE-EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFID-VKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~-~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
....++|||+|||+.+++++|+++|.+|| .+.. +.|+.+ .+|+++|||||+|.+.++|++||+. |+..|+||.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLE--IVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCC--EEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34567999999999999999999999999 7876 888888 5899999999999999999999997 99999999999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|.++.+..
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987643
No 98
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-20 Score=124.64 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=73.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++|| .+.. .++.++.+|.++|||||+|.+.++|++||+ |||..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELF--AKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHH--HHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC--Ccce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3467999999999999999999999999 7766 667777788999999999999999999999 99999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++++
T Consensus 91 ~a~~~ 95 (101)
T 1fj7_A 91 KPKGR 95 (101)
T ss_dssp CCSCC
T ss_pred EcCCC
Confidence 99764
No 99
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=8.4e-20 Score=117.62 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
..-|||+||++.+++++|+++|.+|| .|..++++. ++|||||+|.+.++|++|++.||+..+.|+.|+|++|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G--~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG--PLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS--CEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC--CEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 45799999999999999999999999 999999865 5899999999999999999999999999999999998
Q ss_pred C
Q psy8001 150 T 150 (172)
Q Consensus 150 ~ 150 (172)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 100
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=3.9e-20 Score=129.57 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=77.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCC---eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPD---FIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~---~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
+.....++|||+|||+.+++++|+++|++|| . +..|+|++++. |+++|||||+|.+.++|++||+ ||+..|+|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G--~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCT--IHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCC--CSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 3345668999999999999999999999999 6 78999999986 9999999999999999999999 99999999
Q ss_pred cccEEeccCCC
Q psy8001 142 RKPMVAYPTRN 152 (172)
Q Consensus 142 ~~l~v~~a~~~ 152 (172)
|.|+|.++.+.
T Consensus 115 r~i~V~~a~~~ 125 (136)
T 2hgl_A 115 RYIEVFKSHRT 125 (136)
T ss_dssp SEEEEEECCHH
T ss_pred EEEEEEECChH
Confidence 99999998654
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=122.03 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=73.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++|| .+ .|+|++++ +|+++|||||+|.+.++|++||+ +|+..|+||.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN--PM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC--CS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC--ce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 4457999999999999999999999999 45 99999998 89999999999999999999995 79999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
++.+.
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 88653
No 102
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=7.2e-20 Score=124.66 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=66.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc----
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK---- 143 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~---- 143 (172)
...++|||+|||+.+++++|+++|.+|| .|..+.|+.+ |||||+|.+.++|++||+.|||..|+|++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGS--CEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 4568999999999999999999999999 8999998765 89999999999999999999999999999
Q ss_pred -cEEeccCCC
Q psy8001 144 -PMVAYPTRN 152 (172)
Q Consensus 144 -l~v~~a~~~ 152 (172)
|+|..+.+.
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 777777653
No 103
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=115.18 Aligned_cols=77 Identities=21% Similarity=0.345 Sum_probs=71.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .|..+.++ +|||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYG--KVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSS--CEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEE
Confidence 44568999999999999999999999999 89999886 589999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
++++++.
T Consensus 75 ~~a~~~~ 81 (90)
T 2dnq_A 75 EASKNKS 81 (90)
T ss_dssp ECSSCCC
T ss_pred EECCCCC
Confidence 9998643
No 104
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=118.67 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=73.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .| +++.+ .+++++|||||+|.+.++|++||+.|||..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g--~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKAT--FI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCS--EE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--EE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 344568999999999999999999999999 55 66666 4889999999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|++++++
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9999764
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=122.99 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCC--ceeCCcccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPT--LELHGRKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g--~~l~g~~l~ 145 (172)
.+..+|||+|||+.+++++|+++|++|| .|..+.|+.+ +|||||+|.+.++|++|++.|++ ..|.|+.|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG--~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTS--CCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4567999999999999999999999999 8999999875 69999999999999999998884 689999999
Q ss_pred EeccCCCCcch
Q psy8001 146 VAYPTRNVLYQ 156 (172)
Q Consensus 146 v~~a~~~~~~~ 156 (172)
|.+++++....
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998765444
No 106
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=119.84 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=71.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
++|||+|||+.+++++|+++|++|| .|..+.++.+ ++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYG--PLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHC--CCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 4799999999999999999999999 8999999876 68999999999999999999999999999999999998
Q ss_pred CCC
Q psy8001 151 RNV 153 (172)
Q Consensus 151 ~~~ 153 (172)
+..
T Consensus 74 ~~~ 76 (101)
T 2hvz_A 74 GMP 76 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 107
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=117.16 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++|| .|. +.++.+ .++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G--~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELG--SVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTT--CCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcC--CEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4457999999999999999999999999 665 566654 578999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++++
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99864
No 108
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.80 E-value=4.9e-19 Score=118.05 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=71.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++|| .|..+.++ +|||||+|.+.++|++||+.|||..|.|+.|+|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFG--KLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHS--CEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 4557999999999999999999999999 89999875 4699999999999999999999999999999999
Q ss_pred ccCCCCcch
Q psy8001 148 YPTRNVLYQ 156 (172)
Q Consensus 148 ~a~~~~~~~ 156 (172)
++++.....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998765433
No 109
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.9e-19 Score=113.09 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=71.2
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHC-CCceeCCcc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL-PTLELHGRK 143 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l-~g~~l~g~~ 143 (172)
......++|||+|||..+++++|+++|++|| .+..+.+++ .+|||||+|.+.++|++|++.| +|..+.|+.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFG--EIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTS--CEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCC--CEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3345567999999999999999999999999 899999876 3689999999999999999998 999999999
Q ss_pred cEEeccC
Q psy8001 144 PMVAYPT 150 (172)
Q Consensus 144 l~v~~a~ 150 (172)
|+|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999985
No 110
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=6.9e-20 Score=115.13 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
+|||+|||+.+++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|++|++ +++..++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFG--EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHS--CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999999999 89999999999899999999999999999999998 5999999999999875
No 111
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=1.2e-19 Score=119.58 Aligned_cols=83 Identities=11% Similarity=0.234 Sum_probs=74.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH----HHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMS----DAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~----~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
...+.++|||+|||+.+++++|+ ++|++|| .+..+.++. +|.++|||||+|.+.++|+.|++.|||..++|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G--~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFG--QILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGS--CEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 34466799999999999999999 9999999 899998763 57789999999999999999999999999999
Q ss_pred cccEEeccCCCC
Q psy8001 142 RKPMVAYPTRNV 153 (172)
Q Consensus 142 ~~l~v~~a~~~~ 153 (172)
+.|+|.++++..
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999999998754
No 112
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=8.9e-20 Score=116.52 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=67.6
Q ss_pred ceEEEcCCCCCC------CHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc-c
Q psy8001 71 CNLYVGNLTWWT------TEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR-K 143 (172)
Q Consensus 71 ~~v~V~nL~~~~------~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~-~ 143 (172)
++|||+|||+.+ ++++|+++|++|| .|..+.++ +.+|+++|||||+|.+.++|++|++.|||..|+|+ +
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--KITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC--CEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC--CeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCcee
Confidence 589999999999 7799999999999 89999887 34889999999999999999999999999999999 8
Q ss_pred cEEe
Q psy8001 144 PMVA 147 (172)
Q Consensus 144 l~v~ 147 (172)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8873
No 113
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=118.19 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCce--eCCccc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLE--LHGRKP 144 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~--l~g~~l 144 (172)
..+...|||+|||+.+++++|+++|++|| .|..+.+++ .+|||||+|.+.++|.+|++.|++.. |.|+.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG--~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFG--PISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34567999999999999999999999999 899999874 46899999999999999999999875 889999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
.|++++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998754
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.1e-19 Score=117.82 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=71.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHC--CCceeCCcccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL--PTLELHGRKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l--~g~~l~g~~l~ 145 (172)
.+.++|||+|||+.+++++|+++|++|| .|..+.++.+ +|||||+|.+.++|+.|++.| ++..|.|+.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG--~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFG--KVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4567999999999999999999999999 8999988764 799999999999999999977 46789999999
Q ss_pred EeccCCCCcc
Q psy8001 146 VAYPTRNVLY 155 (172)
Q Consensus 146 v~~a~~~~~~ 155 (172)
|.+++.+...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999875433
No 115
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-19 Score=118.82 Aligned_cols=79 Identities=18% Similarity=0.389 Sum_probs=73.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||..+++++|+++|++|| .|..+.|+.+ +|||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFG--QIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHS--CEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34567999999999999999999999999 8999998875 689999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
.++++..
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4g_A 94 YWGKESP 100 (109)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9998753
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.3e-19 Score=118.35 Aligned_cols=76 Identities=22% Similarity=0.487 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||..+++++|+++|++|| .|..++++ +++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFG--FILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTS--CCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCC--CEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3457999999999999999999999999 89999886 357999999999999999999999999999999999
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9975
No 117
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=118.08 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc--eeCCcccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL--ELHGRKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~--~l~g~~l~ 145 (172)
.+..+|||+|||+.+++++|+++|++|| .|..+.++.+ +|||||+|.+.++|++|++.|++. .|.|+.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG--~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFG--TICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTS--CEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4557999999999999999999999999 8999988753 689999999999999999988765 59999999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|.+++.+.
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99998654
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.2e-19 Score=115.92 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=71.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC--CcccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH--GRKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~--g~~l~ 145 (172)
...++|||+|||+.+++++|+++|++|| .|..+.++.+ +|||||+|.+.++|++|++.|||..|. |+.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFG--SIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTS--CEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3457999999999999999999999999 8999988643 689999999999999999999999999 99999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|++++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998653
No 119
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.79 E-value=5.9e-19 Score=128.82 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=80.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..|.|+.++ ++.++|||||+|.+.++|++||+.|||..|+|+.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTS--CCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 345678999999999999999999999999 89999999998 999999999999999999999999999999999999
Q ss_pred EeccCCCCc
Q psy8001 146 VAYPTRNVL 154 (172)
Q Consensus 146 v~~a~~~~~ 154 (172)
|+++.....
T Consensus 161 V~~a~~~~~ 169 (177)
T 2f3j_A 161 IQLVASQID 169 (177)
T ss_dssp EEEESSGGG
T ss_pred EEEecCCCC
Confidence 999986543
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=6.5e-19 Score=118.66 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=71.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.++ +|||||+|.+.++|++|++.|||..++|+.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFG--PMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTS--CCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345567999999999999999999999999 89999886 68999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.++++.
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 9999864
No 121
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=1.1e-18 Score=115.36 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=70.2
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 67 SSSHCNLYVGNLTW-WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 67 ~~~~~~v~V~nL~~-~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
....++|||+|||+ .+++++|+++|++|| .|..+.+ .+|||||+|.+.++|++|++.|||..++|++|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G--~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGS--CEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34567999999998 999999999999999 8999988 278999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|++++..
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999764
No 122
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=120.07 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|+.|+ |..|+|+.++ +|+++|||||+|.+.++|++|| .||+..|+||.|.|.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~~---v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGLR---VDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTSC---CCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccCC---eeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 3467999999999999999999999996 6799999998 4999999999999999999999 599999999999999
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 8864
No 123
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=7.7e-19 Score=131.38 Aligned_cols=83 Identities=17% Similarity=0.307 Sum_probs=78.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
+.++|||+|||+.+++++|+++|++|| .|..|+|++|+.+++++|||||+|.+.++|++||+.||+..+.|+.|++.+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAG--PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy8001 149 PTRNV 153 (172)
Q Consensus 149 a~~~~ 153 (172)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87643
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=9.3e-19 Score=118.79 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=73.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|+.|| .|..+.++.+ +.++|||||+|.+.++|++|++.|||..++|+.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYG--PIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3457999999999999999999999999 8999999865 4568999999999999999999999999999999999
Q ss_pred ccCC
Q psy8001 148 YPTR 151 (172)
Q Consensus 148 ~a~~ 151 (172)
++++
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 9975
No 125
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=5e-19 Score=119.79 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|++||. .|..+.+.. .+++|||||+|.+.++|++||+.|||..|+|+.|+|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~-~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSL-ETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTC-CCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCC-eeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 35689999999999999999999999992 266676643 2478999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 99753
No 126
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.5e-19 Score=116.24 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .|..+.++.+ +|||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTC--CCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34567999999999999999999999999 8999988753 689999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
.++++..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 9998753
No 127
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=125.06 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=74.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCe----EEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDF----IDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~----~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
...++|||+|||+.+++++|+++|++|| .| ..|+|+.++ +|+++|||||+|.+.++|++||+. |+..|+||.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g--~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHC--PITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTS--CCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhC--CccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeE
Confidence 4567999999999999999999999999 54 689999986 899999999999999999999995 999999999
Q ss_pred cEEeccCCCC
Q psy8001 144 PMVAYPTRNV 153 (172)
Q Consensus 144 l~v~~a~~~~ 153 (172)
|.|..+.+..
T Consensus 97 i~V~~a~~~e 106 (123)
T 2dha_A 97 IELFRSTAAE 106 (123)
T ss_dssp ECCEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999886543
No 128
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.2e-19 Score=117.94 Aligned_cols=76 Identities=7% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc--eeCCccc
Q psy8001 68 SSHCNLYVGNLTW-WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL--ELHGRKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~-~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~--~l~g~~l 144 (172)
.+..+|||+|||+ .+++++|+++|++|| .|..+.|+++ +|||||+|.+.++|+.||+.||+. .|.|+.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG--~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFG--VISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGS--CEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcC--CEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 3567999999999 999999999999999 9999999765 489999999999999999999864 5999999
Q ss_pred EEeccCC
Q psy8001 145 MVAYPTR 151 (172)
Q Consensus 145 ~v~~a~~ 151 (172)
+|.+|+.
T Consensus 85 ~V~~a~~ 91 (102)
T 1x4d_A 85 RVHLSQK 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9999975
No 129
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=9.7e-21 Score=128.97 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=78.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEE--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFID--------VKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL 139 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~--------~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l 139 (172)
.+.++|||+|||+.+++++|+++|++|| .+.. +.|+.++.+++++|||||+|.+.++|++||+.|||..|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567999999999999999999999999 8888 89999988999999999999999999999999999999
Q ss_pred CCcccEEeccCCCC
Q psy8001 140 HGRKPMVAYPTRNV 153 (172)
Q Consensus 140 ~g~~l~v~~a~~~~ 153 (172)
.|+.|+|++++++.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999998643
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-19 Score=116.60 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=70.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .+..+ ..++.++|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g--~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEE--EECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCC--cEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34568999999999999999999999999 66544 237889999999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.+++++
T Consensus 86 ~~a~~~ 91 (96)
T 1fjc_A 86 YYTGEK 91 (96)
T ss_dssp EECSSS
T ss_pred EEcCCC
Confidence 999764
No 131
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.2e-18 Score=122.94 Aligned_cols=84 Identities=19% Similarity=0.425 Sum_probs=79.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||..+++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 344567999999999999999999999999 999999999988999999999999999999999999999999999999
Q ss_pred EeccCC
Q psy8001 146 VAYPTR 151 (172)
Q Consensus 146 v~~a~~ 151 (172)
|.+|++
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999863
No 132
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=114.05 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEE-EEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDV-KFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~-~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...++|||+|||+.+++++|+++|++|| .|..+ .++.++.++ .|||+|.+.++|+.|++.|||..|+|+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYG--VVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHS--CEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3457999999999999999999999999 89999 488776443 3999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
+++++..
T Consensus 87 ~~a~~~~ 93 (96)
T 2e44_A 87 AYIPDEM 93 (96)
T ss_dssp EECCCCC
T ss_pred EEcCccc
Confidence 9998753
No 133
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.5e-19 Score=115.45 Aligned_cols=77 Identities=16% Similarity=0.287 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 67 SSSHCNLYVGNLTW-WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 67 ~~~~~~v~V~nL~~-~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
..+.++|||+|||+ .+++++|+++|++|| .|..+.+. +|||||+|.+.++|+.|++.|||..+.|+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTC--CCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34678999999999 999999999999999 89998873 68999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|+++++..
T Consensus 77 V~~a~~~~ 84 (96)
T 2kvi_A 77 LEVSSSNA 84 (96)
T ss_dssp EEEEECCC
T ss_pred EEEcCcCC
Confidence 99997654
No 134
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=2.8e-19 Score=118.89 Aligned_cols=81 Identities=20% Similarity=0.378 Sum_probs=75.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .|..+.++.++ +|.++|||||+|.+.++|++|++ ++..|+|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYG--SVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEE
Confidence 34457999999999999999999999999 99999999999 99999999999999999999998 999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.++.+.
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 998753
No 135
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=112.87 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=70.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..+.++ ++||||+|.+.++|++|++.|||..|.|+.|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYG--PVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTS--CCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 345568999999999999999999999999 89999885 34999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|++++++
T Consensus 76 V~~a~~~ 82 (92)
T 2dgt_A 76 VQLSTSR 82 (92)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 9999764
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=111.92 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .|..+.++ ++||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRG--RVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHS--CEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCC--CEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567999999999999999999999999 89999885 349999999999999999999999999999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
+++++.
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999764
No 137
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=112.54 Aligned_cols=76 Identities=26% Similarity=0.233 Sum_probs=69.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhc--CCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSI--GVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~--g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
...++|||+|||+.+++++|+++|++| | .|..+++ .+|||||+|.+.++|++|++.|||..|.|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g--~v~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERVKK--------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTT--CEEEEEE--------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCc--ceEEEEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 456799999999999999999999999 8 7888876 367999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|.++++..
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99998643
No 138
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=3.3e-18 Score=122.10 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=78.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
.++|||+|||+.+++++|+++|+.|| .+..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEec
Confidence 46899999999999999999999999 9999999999989999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy8001 150 TRNV 153 (172)
Q Consensus 150 ~~~~ 153 (172)
.+..
T Consensus 80 ~~~~ 83 (167)
T 1fxl_A 80 RPSS 83 (167)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8643
No 139
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=126.37 Aligned_cols=81 Identities=21% Similarity=0.374 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEE--------EEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCce
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDV--------KFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLE 138 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~--------~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~ 138 (172)
....++|||+|||+.+++++|+.+|+.|| .|..+ .+. .+|.++|||||+|.+.++|.+||+.|||..
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYV--DFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGC--CTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 44567999999999999999999999999 66553 322 278899999999999999999999999999
Q ss_pred eCCcccEEeccCCC
Q psy8001 139 LHGRKPMVAYPTRN 152 (172)
Q Consensus 139 l~g~~l~v~~a~~~ 152 (172)
|.|+.|.|.++++.
T Consensus 117 ~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 117 LFGKPMVVQFARSA 130 (143)
T ss_dssp ETTEECEEEECCCS
T ss_pred eCCcEEEEEECCCC
Confidence 99999999999764
No 140
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=1.9e-18 Score=142.15 Aligned_cols=86 Identities=15% Similarity=0.322 Sum_probs=80.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+||++.+++++|+.+|++|| .|..|.|+.++.+|.++|||||+|.+.++|++||+.|||..|+|+.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYG--PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 34567999999999999999999999999 8999999999989999999999999999999999999999999999999
Q ss_pred eccCCCCc
Q psy8001 147 AYPTRNVL 154 (172)
Q Consensus 147 ~~a~~~~~ 154 (172)
.++.+...
T Consensus 177 ~~a~~~~~ 184 (437)
T 3pgw_S 177 DVERGRTV 184 (437)
T ss_pred EEeCCCCC
Confidence 99986543
No 141
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.6e-18 Score=122.98 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=73.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|++|| .|..++++.+ ++|||||+|.+.++|+.|++.|||..|+|+.|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYG--PLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHS--CEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344568999999999999999999999999 9999999876 589999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|++++++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999764
No 142
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=2.1e-18 Score=123.48 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=78.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
+.++|||+|||+.+++++|+++|+.|| .+..+.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIG--PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 457999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
+.+.
T Consensus 80 ~~~~ 83 (168)
T 1b7f_A 80 ARPG 83 (168)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
No 143
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.76 E-value=1.4e-17 Score=122.29 Aligned_cols=85 Identities=16% Similarity=0.329 Sum_probs=80.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|++|++.|||..|+|+.|.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFG--PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBS--CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC--CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 35668999999999999999999999999 9999999999889999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
.++++..
T Consensus 189 ~~a~~~~ 195 (198)
T 2yh0_A 189 QRASVGA 195 (198)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998653
No 144
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=117.16 Aligned_cols=79 Identities=11% Similarity=0.124 Sum_probs=69.8
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCC--ceeCCcc
Q psy8001 67 SSSHCNLYVGNLTWW-TTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPT--LELHGRK 143 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~-~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g--~~l~g~~ 143 (172)
..+.++|||+|||+. +++++|+++|++|| .|..+.|++ .+|||||+|.+.++|+.|++.||+ ..|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG--~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG--KIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS--CCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC--CEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 345679999999998 99999999999999 899999864 479999999999999999998864 5699999
Q ss_pred cEEeccCCCC
Q psy8001 144 PMVAYPTRNV 153 (172)
Q Consensus 144 l~v~~a~~~~ 153 (172)
|+|.+++...
T Consensus 94 l~V~~a~~~~ 103 (112)
T 1x4f_A 94 VKVDLSEKYK 103 (112)
T ss_dssp CEEEEECSCS
T ss_pred EEEEECcccc
Confidence 9999997643
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=1e-17 Score=112.88 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 68 SSHCNLYVGNLTWW-TTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~-~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
...++|||+|||+. +++++|+++|++|| .|..+.+ ++|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G--~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYG--RVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGS--CCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34579999999999 99999999999999 8989887 5799999999999999999999999999999999
Q ss_pred eccCC
Q psy8001 147 AYPTR 151 (172)
Q Consensus 147 ~~a~~ 151 (172)
++++.
T Consensus 95 ~~a~~ 99 (110)
T 1wf1_A 95 NMAGE 99 (110)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99975
No 146
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=113.16 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCC-eEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCC-ceeCCcccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPD-FIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPT-LELHGRKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~-~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g-~~l~g~~l~ 145 (172)
...++|||+|||+.+++++|+++|++|| . +..+.+. ++|||||+|.+.++|++|++.||| ..|+|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRK--LPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTT--CCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcC--CceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4557999999999999999999999999 6 4544442 478999999999999999999999 999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|++++++
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999864
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=4.1e-18 Score=126.73 Aligned_cols=84 Identities=13% Similarity=0.256 Sum_probs=79.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||..+++++|+++|++|| .|..++++.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFG--KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG 200 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccC--CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEE
Confidence 3457999999999999999999999999 99999999999899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy8001 148 YPTRNV 153 (172)
Q Consensus 148 ~a~~~~ 153 (172)
++.++.
T Consensus 201 ~a~~~~ 206 (216)
T 2qfj_A 201 KAVTPP 206 (216)
T ss_dssp ECSSCS
T ss_pred EecCCC
Confidence 998754
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=5.8e-18 Score=121.44 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC--ccc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG--RKP 144 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g--~~l 144 (172)
......|||+||++.+++++|+++|++|| .|.+|.|..++ .+|||||+|.+.++|+.|++.|||..|.| +.|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG--~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHS--CEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 34456899999999999999999999999 99999986532 57899999999999999999999999965 999
Q ss_pred EEeccCCCC
Q psy8001 145 MVAYPTRNV 153 (172)
Q Consensus 145 ~v~~a~~~~ 153 (172)
+|+|++++.
T Consensus 117 ~V~~Ak~~~ 125 (164)
T 1sjr_A 117 RIDFSKLTS 125 (164)
T ss_dssp EEEECSSSS
T ss_pred EEEEecCCc
Confidence 999999764
No 149
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=1.2e-18 Score=120.33 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=71.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeE--EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFI--DVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~--~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
...++|||+|||+.+++++|+++|++|+ +. .|+|+.|+. |+++|||||+|.+.++|++||+ +++..|+||.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~---i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE---IVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC---EEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC---ceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 4557899999999999999999999998 44 899999985 9999999999999999999998 588999999999
Q ss_pred EeccCC
Q psy8001 146 VAYPTR 151 (172)
Q Consensus 146 v~~a~~ 151 (172)
|..+.+
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=111.16 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=68.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
...+|||+|||+.+++++|+++|++|| .|..| +.++.+|+ ||||+|.+.++|++||+ |||..|+|+.|.|++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFG--PVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTS--CEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 346899999999999999999999999 88876 66665665 99999999999999999 999999999999998
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
+.++
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 8654
No 151
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.6e-18 Score=118.90 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=73.0
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCC----HHH----HHHHHH--HCCC
Q psy8001 71 CNLYVGNL----TWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGS----EES----MSLVME--RLPT 136 (172)
Q Consensus 71 ~~v~V~nL----~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~----~~~----a~~al~--~l~g 136 (172)
..|||+|| ++.+++.+|+++|+.|| .|.++.++.|+.||.++|||||+|.+ .++ |.+|+. .|||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG--eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG--EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS--CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 58999999 99999999999999999 89999999999999999999999995 322 788888 7899
Q ss_pred ceeCCcccEEeccCCCC
Q psy8001 137 LELHGRKPMVAYPTRNV 153 (172)
Q Consensus 137 ~~l~g~~l~v~~a~~~~ 153 (172)
..|+|++|+|.+.+...
T Consensus 81 ~~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 81 CFIMGFKFEVILNKHSI 97 (136)
T ss_dssp EEETTEEEEEEECCTTH
T ss_pred CeecCcEEEEEECcccH
Confidence 99999999999887543
No 152
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=116.46 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=70.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||+.+++++|+++|++|| .|..+.|+. .+|||||+|.+.++|+.||+.|||..|.|+.|.|.|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFG--SLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457999999999999999999999999 899988753 568999999999999999999999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
++..
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 9753
No 153
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.75 E-value=6.4e-18 Score=121.48 Aligned_cols=80 Identities=16% Similarity=0.345 Sum_probs=76.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
...+|||+|||+.+++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|++|.|++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFG--PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTS--CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcC--CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 367899999999999999999999999 999999999988999999999999999999999999999999999999998
Q ss_pred cC
Q psy8001 149 PT 150 (172)
Q Consensus 149 a~ 150 (172)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-17 Score=109.32 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=68.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|| .+++++|+++|++|| .|..+.|. .++|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G--~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTS--CEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCC--CEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35679999996 899999999999999 89999884 467999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++++
T Consensus 83 ~a~~~ 87 (97)
T 1x5p_A 83 IARKQ 87 (97)
T ss_dssp CCSSC
T ss_pred ECCCC
Confidence 99764
No 155
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=4.5e-18 Score=127.18 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=74.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
..+|||+||++.+++++|+++|++|| .|..++|++++ +.++|||||+|.+.++|++||+.|||..|+|++|+|.++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cccceECCcccccHHHHHHHHHhhcC--CeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46899999999999999999999999 99999999985 457999999999999999999999999999999999999
Q ss_pred CCC
Q psy8001 150 TRN 152 (172)
Q Consensus 150 ~~~ 152 (172)
+++
T Consensus 179 ~~~ 181 (213)
T 4f02_A 179 KSR 181 (213)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=9.4e-18 Score=123.01 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=78.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|++||+. ++..+.|+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWG--TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 3445678999999999999999999999999 899999999998999999999999999999999985 9999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
.|.++...
T Consensus 85 ~v~~~~~~ 92 (196)
T 1l3k_A 85 EPKRAVSR 92 (196)
T ss_dssp EEEECCC-
T ss_pred eeecccCc
Confidence 99998764
No 157
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=6.7e-19 Score=123.71 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....++|||+|||+.+++++|+++|++|| . ..|+|+.|+. |+++|||||+|.+.++|++|| .+|+..|+||.|+|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G--i-~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN--P-VRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC--C-SEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--C-eEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 34567999999999999999999999999 3 3899999984 999999999999999999999 68999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
..+.+..
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9987653
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=3.3e-18 Score=122.41 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=76.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
...+|||+|||..+++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|.+|++ ++|..++|+.|.|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWG--TIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKR 162 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTS--CCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCc--cEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEee
Confidence 356899999999999999999999999 89999999998899999999999999999999998 899999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
+.++
T Consensus 163 a~pk 166 (167)
T 2cjk_A 163 AEPR 166 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9864
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=1.4e-17 Score=115.25 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=72.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHCCCceeCC--ccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGF-CTVTLGSEESMSLVMERLPTLELHG--RKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~g~~l~g--~~l 144 (172)
..-..|||+||++.+++++|+++|++|| .|.+|.++.+ .+|| |||+|.+.++|+.|++.|||..|.| +.|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG--~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSS--CEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcC--CEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 4456899999999999999999999999 9999988764 3677 9999999999999999999999988 899
Q ss_pred EEeccCCCCc
Q psy8001 145 MVAYPTRNVL 154 (172)
Q Consensus 145 ~v~~a~~~~~ 154 (172)
+|+++++...
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999997643
No 160
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=113.07 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=69.2
Q ss_pred CCCcceEEE--cCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee-----
Q psy8001 67 SSSHCNLYV--GNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL----- 139 (172)
Q Consensus 67 ~~~~~~v~V--~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l----- 139 (172)
..+..+||| |||++.+++++|+++|++|| .|..+.|+. .+|||||+|.+.++|++|++.|||..|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG--~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHS--CEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcC--CeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 344678999 77999999999999999999 899887753 368999999999999999999999998
Q ss_pred CCcccEEeccCCC
Q psy8001 140 HGRKPMVAYPTRN 152 (172)
Q Consensus 140 ~g~~l~v~~a~~~ 152 (172)
.|+.|.|.+++..
T Consensus 94 ~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 94 QKITLYLNFVEKV 106 (114)
T ss_dssp CEEECEEEEESCC
T ss_pred CCcEEEEEecccC
Confidence 7899999999753
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.9e-17 Score=121.32 Aligned_cols=83 Identities=17% Similarity=0.288 Sum_probs=75.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|||+.+++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 3457999999999999999999999999 999999999998999999999999999999999985 8999999999999
Q ss_pred ccCCCC
Q psy8001 148 YPTRNV 153 (172)
Q Consensus 148 ~a~~~~ 153 (172)
++.++.
T Consensus 179 ~a~~k~ 184 (196)
T 1l3k_A 179 KALSKQ 184 (196)
T ss_dssp ECC---
T ss_pred ecCChh
Confidence 998653
No 162
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=9.3e-17 Score=110.51 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=69.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccE-EEEEeCCHHHHHHHHHHCCCceeCC--ccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGF-CTVTLGSEESMSLVMERLPTLELHG--RKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~-afv~f~~~~~a~~al~~l~g~~l~g--~~l 144 (172)
.....|||+||++.+++++|+++|++|| .|..|.|+. + .|| |||+|.+.++|..|++.|||..|.| +.|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG--~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVG--KVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTS--CEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcC--CEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 3445689999999999999999999999 999999864 2 276 9999999999999999999999988 689
Q ss_pred EEeccCCCCc
Q psy8001 145 MVAYPTRNVL 154 (172)
Q Consensus 145 ~v~~a~~~~~ 154 (172)
+|.+|+++.+
T Consensus 95 ~V~~Ak~~~l 104 (124)
T 2e5i_A 95 KIEYARPTRL 104 (124)
T ss_dssp EEECCSCSCC
T ss_pred EEEEecCCcc
Confidence 9999997653
No 163
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.5e-17 Score=123.95 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=72.3
Q ss_pred CcceEEEcCCC-CCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 69 SHCNLYVGNLT-WWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 69 ~~~~v~V~nL~-~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
++++|||+||+ +.+++++|+++|++|| .|..|+|+.+ .+|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G--~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYG--NVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTS--CEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcC--CeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 56799999999 8999999999999999 9999999765 37999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy8001 148 YPTRNV 153 (172)
Q Consensus 148 ~a~~~~ 153 (172)
+++...
T Consensus 76 ~s~~~~ 81 (205)
T 3tyt_A 76 VSKQPA 81 (205)
T ss_dssp ECSCSC
T ss_pred EccCCc
Confidence 997543
No 164
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.9e-17 Score=123.09 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=75.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||+.+++++|+++|+.|| .|..+.+++++.+|.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFG--PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCC--CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 357899999999999999999999999 999999999998999999999999999999999999999999999999998
Q ss_pred cCCCC
Q psy8001 149 PTRNV 153 (172)
Q Consensus 149 a~~~~ 153 (172)
+....
T Consensus 105 ~~~~~ 109 (216)
T 2qfj_A 105 PSNIG 109 (216)
T ss_dssp CSCCG
T ss_pred CCCcc
Confidence 87643
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-17 Score=117.94 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=74.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
.+|||+|||..+++++|+++|++|| .|..+.++.++ +++++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGG--PIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGS--CEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcC--CeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 3799999999999999999999999 99999999998 67899999999999999999999999999999999999997
Q ss_pred CCC
Q psy8001 151 RNV 153 (172)
Q Consensus 151 ~~~ 153 (172)
+..
T Consensus 78 ~~~ 80 (166)
T 3md3_A 78 QSQ 80 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=3.7e-17 Score=116.94 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=75.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC--cccE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG--RKPM 145 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g--~~l~ 145 (172)
...++|||+|||..+++++|+++|++|| .+..+.+++++.+|.++|||||+|.+.++|.+|++.|||..+.| ++|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCC--cEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 3457999999999999999999999999 99999999999899999999999999999999999999999988 9999
Q ss_pred Eecc
Q psy8001 146 VAYP 149 (172)
Q Consensus 146 v~~a 149 (172)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 167
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=1.5e-17 Score=107.68 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=67.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||+.+++++|+++|++|. +..+++. +++|||||+|.+.++|++|++.|||..++|++|+|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYD---LKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSC---CCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCC---eEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 457899999999999999999999994 5666663 5789999999999999999999999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
+...
T Consensus 75 a~~~ 78 (88)
T 1wg1_A 75 QPTD 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9753
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=105.75 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=63.4
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHHhc-CCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 71 CNLYVGNLTWWTTEAD----MSDAIRSI-GVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~----l~~~f~~~-g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
+.|||+|||+.+++++ |+++|++| | .|..| ++ |||||.|.+.++|.+|++.|||..+.||.|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG--~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGG--KVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTC--CEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCC--eeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 3499999999999988 55899999 7 67776 34 9999999999999999999999999999999
Q ss_pred EeccCCCC
Q psy8001 146 VAYPTRNV 153 (172)
Q Consensus 146 v~~a~~~~ 153 (172)
|.+|+...
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998643
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=4.5e-17 Score=116.13 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=74.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc--cEE
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK--PMV 146 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~--l~v 146 (172)
...+|||+|||..+++++|+++|++|| .+..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+. |+|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcC--CEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 457899999999999999999999999 9999999999889999999999999999999999999999999975 888
Q ss_pred ecc
Q psy8001 147 AYP 149 (172)
Q Consensus 147 ~~a 149 (172)
+||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=113.52 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=67.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCC---CCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASN---GQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~---g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
...++|||+|||+.+++++|+++|++|| .|. +.++.++.+ |+++|||||+|.+.++|++||+.|+ .++|+.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G--~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFG--PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTC--CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcC--CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 3457899999999999999999999999 787 888888766 7899999999999999999999984 3677777
Q ss_pred EEeccC
Q psy8001 145 MVAYPT 150 (172)
Q Consensus 145 ~v~~a~ 150 (172)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 766554
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=3.3e-17 Score=106.52 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=62.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCce--eCCccc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLE--LHGRKP 144 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~--l~g~~l 144 (172)
....++|||+|||+.+++++|+++|++|| .|..++|+++ ++|||||+|.+.++|++ |++.. +.|++|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G--~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYG--EVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34567999999999999999999999999 9999998774 68999999999999883 45554 569999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
.|.++.++
T Consensus 77 ~v~~a~~k 84 (89)
T 3d2w_A 77 HISNAEPK 84 (89)
T ss_dssp EEEECC--
T ss_pred EEEEcCCC
Confidence 99999764
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=8.7e-17 Score=115.60 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=73.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC---Cccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH---GRKP 144 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~---g~~l 144 (172)
....+|||+|||+.+++++|+++|++|| .|..+.++.++ +|.++|||||+|.+.++|.+|++.|||..+. |+.|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFG--QIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 3567899999999999999999999999 89999999987 6899999999999999999999999999776 4999
Q ss_pred EEeccC
Q psy8001 145 MVAYPT 150 (172)
Q Consensus 145 ~v~~a~ 150 (172)
.|.+|.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999873
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=8.1e-17 Score=115.76 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=74.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHCCCceeC---Ccc
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNG--QSKGFCTVTLGSEESMSLVMERLPTLELH---GRK 143 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g--~~~g~afv~f~~~~~a~~al~~l~g~~l~---g~~ 143 (172)
+.++|||+|||+.+++++|+++|++|| .|..+++++++.++ +++|||||+|.+.++|++|++.|||..+. ++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYG--AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 457999999999999999999999999 99999999999776 89999999999999999999999998776 577
Q ss_pred cEEeccCC
Q psy8001 144 PMVAYPTR 151 (172)
Q Consensus 144 l~v~~a~~ 151 (172)
+.+.++..
T Consensus 80 ~~~~~~~~ 87 (175)
T 3nmr_A 80 IQMKPADS 87 (175)
T ss_dssp CEEEECGG
T ss_pred eEEccccc
Confidence 88887764
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=8.1e-17 Score=110.51 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=68.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
...++|||+|| .+++++|+++|++|| .|..+.+. .++|||||+|.+.++|++||+.|||..|.|+.|+|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G--~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTC--CCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccC--CEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45679999996 699999999999999 88888875 468999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
++++.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99865
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=1.6e-16 Score=117.43 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=72.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEecc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYP 149 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a 149 (172)
.++|||+|||+.+++++|+++|++|| .|..|+|+++. +|.++|||||+|.+.++|++|++.+ +..++|+.|.|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKG--QVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSC--CEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCC--CEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEh
Confidence 57899999999999999999999999 99999999987 6889999999999999999999865 56999999999988
Q ss_pred CC
Q psy8001 150 TR 151 (172)
Q Consensus 150 ~~ 151 (172)
+.
T Consensus 185 ~~ 186 (193)
T 2voo_A 185 DD 186 (193)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.5e-16 Score=123.26 Aligned_cols=83 Identities=11% Similarity=0.235 Sum_probs=75.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHH----HHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMS----DAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG 141 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~----~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g 141 (172)
.....++|||+|||+.+++++|+ ++|+.|| .|..|++++ +++++|||||+|.+.++|++||+.|||..|.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G--~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFG--QILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccC--CeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 44567899999999999999977 8999999 899998875 78899999999999999999999999999999
Q ss_pred cccEEeccCCCC
Q psy8001 142 RKPMVAYPTRNV 153 (172)
Q Consensus 142 ~~l~v~~a~~~~ 153 (172)
+.|+|.+++...
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999997644
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=7.5e-17 Score=115.33 Aligned_cols=79 Identities=23% Similarity=0.472 Sum_probs=73.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
+.++|||+|||+.+++++|+++|+.|| .+..+++++++.+|.++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYG--TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTC--CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccc
Confidence 357999999999999999999999999 99999999999899999999999999999999999 46799999999998
Q ss_pred cCC
Q psy8001 149 PTR 151 (172)
Q Consensus 149 a~~ 151 (172)
+.+
T Consensus 78 ~~~ 80 (167)
T 2cjk_A 78 AIP 80 (167)
T ss_dssp CCC
T ss_pred ccc
Confidence 865
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.68 E-value=2e-16 Score=101.85 Aligned_cols=73 Identities=23% Similarity=0.377 Sum_probs=63.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhc----CCC-----CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSI----GVP-----DFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL 139 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~----g~~-----~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l 139 (172)
..++|||+|||+.+++++|+++|++| |.. .+..+.+..+ +|||||+|.+.++|++|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45799999999999999999999999 621 2667776543 799999999999999999 8999999
Q ss_pred CCcccEEec
Q psy8001 140 HGRKPMVAY 148 (172)
Q Consensus 140 ~g~~l~v~~ 148 (172)
+|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999984
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=3.9e-16 Score=104.50 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=71.6
Q ss_pred CcceEEEcCCCC-----CCCHHHHHHHHHhcCCCCeEEEEEEecCCC-CCcccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 69 SHCNLYVGNLTW-----WTTEADMSDAIRSIGVPDFIDVKFFENASN-GQSKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 69 ~~~~v~V~nL~~-----~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~-g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
+...|+|.||.. .-++++|++.|++|| .|..+.|+.++.+ +.++|||||+|.+.++|.+|++.|||..++||
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G--~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG--KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGS--CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC--CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 456899999963 236899999999999 9999999998754 67899999999999999999999999999999
Q ss_pred ccEEeccCC
Q psy8001 143 KPMVAYPTR 151 (172)
Q Consensus 143 ~l~v~~a~~ 151 (172)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999964
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.1e-16 Score=115.42 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEe
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVA 147 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~ 147 (172)
....+|||+|||..+++++|+++|++|| .+..+ ..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g--~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDAL--EIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCS--EEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcC--eEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3567999999999999999999999999 55544 4488899999999999999999999999999999999999
Q ss_pred ccCCC
Q psy8001 148 YPTRN 152 (172)
Q Consensus 148 ~a~~~ 152 (172)
+++++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99764
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.3e-16 Score=119.10 Aligned_cols=79 Identities=23% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 67 SSSHCNLYVGNLTW-WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 67 ~~~~~~v~V~nL~~-~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
..+.++|||+|||+ .+++++|+++|++|| .|..++++.++ +|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G--~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYG--DVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHT--CEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 45668999999999 999999999999999 89999998875 78999999999999999999999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.+++..
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999854
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=2.6e-15 Score=116.20 Aligned_cols=78 Identities=14% Similarity=0.211 Sum_probs=71.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC-Cccc
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH-GRKP 144 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~-g~~l 144 (172)
.....++|||+||+..+++++|+++|++|| .|..++++.++ +|||||+|.+.++|++|++.|||..|. |+.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFP--GFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcC--CeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 344578899999999999999999999999 99999998654 589999999999999999999999999 9999
Q ss_pred EEeccC
Q psy8001 145 MVAYPT 150 (172)
Q Consensus 145 ~v~~a~ 150 (172)
+|.|++
T Consensus 276 ~v~~ak 281 (282)
T 3pgw_A 276 KISFAK 281 (282)
T ss_pred EEEEec
Confidence 999986
No 183
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.6e-17 Score=104.90 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=64.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||+.+++++|+++|++|| .|..+.|+.+ ++|||||+|.+.++|++|+. ....+.|++|.|.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYG--DVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTS--CCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEe
Confidence 457999999999999999999999999 8999998754 68999999999999975433 23456899999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
++++
T Consensus 75 a~~~ 78 (88)
T 1wf0_A 75 AEPK 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=5.1e-16 Score=120.31 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=78.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
..++|||+|||+.+++++|+++|+.|| .+..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFG--SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcC--CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456999999999999999999999999 899999999998999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
+.+.
T Consensus 172 a~~~ 175 (284)
T 3smz_A 172 TDAG 175 (284)
T ss_dssp CCGG
T ss_pred CCCC
Confidence 9764
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.66 E-value=2.1e-16 Score=122.93 Aligned_cols=83 Identities=10% Similarity=0.144 Sum_probs=75.8
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHHHhcCCCCeEEEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 67 SSSHCNLYVGNLTWW-TTEADMSDAIRSIGVPDFIDVKFFENAS-NGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~-~~~~~l~~~f~~~g~~~~~~~~i~~~~~-~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
.....+|||+|||+. +++++|+++|+.|| .|..++++.+.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFG--SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGS--CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccC--CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 345679999999999 99999999999999 999999999875 5899999999999999999999 999999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
.|.+++++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999864
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=2.8e-16 Score=119.35 Aligned_cols=79 Identities=19% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCC---------CHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 67 SSSHCNLYVGNLTWWT---------TEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~---------~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
.....+||||||+..+ ++++|+.+|++|| .|..|+|+. ++|||||+|.+.++|+.|++.|+|.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG--~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG--DIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS--CEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccC--CEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 3456799999999998 7999999999999 999999985 4799999999999999999999999
Q ss_pred ee------------CCcccEEeccCCCC
Q psy8001 138 EL------------HGRKPMVAYPTRNV 153 (172)
Q Consensus 138 ~l------------~g~~l~v~~a~~~~ 153 (172)
.| .|+.|.|.||+..+
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EEeccccccccccCCCCEEEEEEccCCC
Confidence 99 89999999998644
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.65 E-value=5.5e-16 Score=120.14 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCcceEEEcCCCCCC-CHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEE
Q psy8001 68 SSHCNLYVGNLTWWT-TEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~-~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v 146 (172)
....+|||+|||+.+ ++++|+++|+.|| .|..+.|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVH--SPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSS--CCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCC--CeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 456789999999995 9999999999999 89999999988 8999999999999999999999999999999999999
Q ss_pred eccCCCC
Q psy8001 147 AYPTRNV 153 (172)
Q Consensus 147 ~~a~~~~ 153 (172)
.++++..
T Consensus 259 ~~a~~~~ 265 (284)
T 3smz_A 259 SFCAPGP 265 (284)
T ss_dssp EECCSSS
T ss_pred EEecCCC
Confidence 9998754
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=6.6e-17 Score=116.67 Aligned_cols=83 Identities=24% Similarity=0.324 Sum_probs=72.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|..|| .+.. .++.+..+|.++|||||+|.+.++|++|++ |||..+.|+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g--~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELF--AKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHH--HHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhC--Ccce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEE
Confidence 345678999999999999999999999999 5554 334455578899999999999999999995 999999999999
Q ss_pred EeccCCC
Q psy8001 146 VAYPTRN 152 (172)
Q Consensus 146 v~~a~~~ 152 (172)
|.++.+.
T Consensus 85 v~~~~~~ 91 (175)
T 1fje_B 85 LEKPKGR 91 (175)
T ss_dssp EECCCCS
T ss_pred EecCCCc
Confidence 9999864
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=5e-16 Score=114.28 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=71.2
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEec
Q psy8001 70 HCNLYVGNLTW-WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148 (172)
Q Consensus 70 ~~~v~V~nL~~-~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~ 148 (172)
+++|||+|||+ .+++++|+++|+.|| .|..++++.++ +|||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G--~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYG--DVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTC--CCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 57999999999 999999999999999 89999998764 78999999999999999999999999999999999
Q ss_pred cCCC
Q psy8001 149 PTRN 152 (172)
Q Consensus 149 a~~~ 152 (172)
++..
T Consensus 76 a~~~ 79 (198)
T 1qm9_A 76 SKHQ 79 (198)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9864
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.1e-15 Score=99.00 Aligned_cols=80 Identities=11% Similarity=0.126 Sum_probs=68.0
Q ss_pred CCcceEEEcCCCCCCC-----------HHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCC
Q psy8001 68 SSHCNLYVGNLTWWTT-----------EADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPT 136 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~-----------~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g 136 (172)
....+|+|.||..... +++|+++|++|| .|..+.| .++ .++|||||+|.+.++|++|++.|||
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G--~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG--QIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS--CCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC--CEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 3467899999944332 579999999999 8999955 554 3789999999999999999999999
Q ss_pred ceeCCcccEEeccCCCC
Q psy8001 137 LELHGRKPMVAYPTRNV 153 (172)
Q Consensus 137 ~~l~g~~l~v~~a~~~~ 153 (172)
..|+|+.|+|.++.+..
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999997643
No 191
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.61 E-value=4.6e-16 Score=103.98 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=64.6
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 75 VGNLTWWTTEADMSDAI------------RSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 75 V~nL~~~~~~~~l~~~f------------~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
+.||++.+++++|++.| ++|| .|..+.|++++ +++++|||||+|.+.++|.+|++.|||..++||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G--~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG--EVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 56788888888777666 9999 99999999887 578899999999999999999999999999999
Q ss_pred ccEEecc
Q psy8001 143 KPMVAYP 149 (172)
Q Consensus 143 ~l~v~~a 149 (172)
.|+|.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.60 E-value=3.8e-15 Score=114.52 Aligned_cols=78 Identities=26% Similarity=0.358 Sum_probs=71.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccE
Q psy8001 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPM 145 (172)
Q Consensus 66 ~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~ 145 (172)
.....++|||+|||+.+++++|+++|+.|| .|..+.+.+ .+|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYG--EPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGC--CCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 345668999999999999999999999999 899998854 369999999999999999999999999999999
Q ss_pred EeccCC
Q psy8001 146 VAYPTR 151 (172)
Q Consensus 146 v~~a~~ 151 (172)
|.++.+
T Consensus 90 v~~a~~ 95 (261)
T 3sde_A 90 IRFATH 95 (261)
T ss_dssp EEECCC
T ss_pred eeeccc
Confidence 999976
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.9e-15 Score=112.58 Aligned_cols=77 Identities=13% Similarity=0.052 Sum_probs=67.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCCCe--EEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc----
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDF--IDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR---- 142 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~--~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~---- 142 (172)
+..+|||+|||+.+++++|+++|++|| .+ ..++++.++ +..+|||||+|.+.++|.+||..|||..|.|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G--~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELG--VKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHT--CCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 456899999999999999999999999 77 889988775 55679999999999999999999999999987
Q ss_pred ccEEecc
Q psy8001 143 KPMVAYP 149 (172)
Q Consensus 143 ~l~v~~a 149 (172)
.+.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 4555543
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=5.3e-15 Score=113.70 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=73.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc-eeC---Ccc
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL-ELH---GRK 143 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~-~l~---g~~ 143 (172)
..+.+|||+|||+.+++++|+++|+.|| .|..+.|+.+. +|.++|||||+|.+.++|.+|+..||+. .+. ++.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFG--PVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcC--CeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 3467999999999999999999999999 99999999995 8999999999999999999999999554 444 999
Q ss_pred cEEeccCC
Q psy8001 144 PMVAYPTR 151 (172)
Q Consensus 144 l~v~~a~~ 151 (172)
|.|.++.+
T Consensus 171 i~v~~~~~ 178 (261)
T 3sde_A 171 VIVEPMEQ 178 (261)
T ss_dssp CEEEECCC
T ss_pred EEEeeccc
Confidence 99999975
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=6.5e-16 Score=113.29 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=64.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcC----CC-----CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSIG----VP-----DFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL 139 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~g----~~-----~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l 139 (172)
..++|||+|||+.+++++|+++|+.|| +. .+..+. .+.++|||||+|.+.++|++|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~------~~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ------INQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEE------EETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeE------ecCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 357999999999999999999999994 11 133333 3456899999999999999999 7999999
Q ss_pred CCcccEEeccCCC
Q psy8001 140 HGRKPMVAYPTRN 152 (172)
Q Consensus 140 ~g~~l~v~~a~~~ 152 (172)
.|+.|.|.+++..
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998764
No 196
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=1.4e-14 Score=96.89 Aligned_cols=81 Identities=15% Similarity=0.042 Sum_probs=69.3
Q ss_pred CcceEEEcCC--CCCCC--------HHHHHHHHHhcCCCCeEEEEEEecCCC--CCcccEEEEEeCCHHHHHHHHHHCCC
Q psy8001 69 SHCNLYVGNL--TWWTT--------EADMSDAIRSIGVPDFIDVKFFENASN--GQSKGFCTVTLGSEESMSLVMERLPT 136 (172)
Q Consensus 69 ~~~~v~V~nL--~~~~~--------~~~l~~~f~~~g~~~~~~~~i~~~~~~--g~~~g~afv~f~~~~~a~~al~~l~g 136 (172)
+...|.+.|+ +.... +++|++.|++|| .|.++.|++++.+ +.++||+||+|.+.++|.+|++.|||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G--~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG--LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS--CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC--CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4567889987 33332 368999999999 9999999988754 36789999999999999999999999
Q ss_pred ceeCCcccEEeccCC
Q psy8001 137 LELHGRKPMVAYPTR 151 (172)
Q Consensus 137 ~~l~g~~l~v~~a~~ 151 (172)
..++||.|+|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999853
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=8.6e-15 Score=107.62 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC-CcccEE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH-GRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~-g~~l~v 146 (172)
.+..+|||+|||..+++++|+++|++||. .+..++++.+ .+|||||+|.+.++|.+|++.|||..++ |+.|+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGG-VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTS-CCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCC-CceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEE
Confidence 45689999999999999999999999993 3778887654 3789999999999999999999999999 999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.+++++
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 999764
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=1.1e-14 Score=113.13 Aligned_cols=82 Identities=11% Similarity=0.105 Sum_probs=70.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 65 ~~~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
......++|||+|||+.+++++|+++|+.|| .|..+.|+.++. + ++|||||+|.+.++|++|++ |||..+.|+.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCG--PIIHVDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGS--CEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 3445678999999999999999999999999 999999999873 3 47999999999999999996 89999999999
Q ss_pred EEeccCC
Q psy8001 145 MVAYPTR 151 (172)
Q Consensus 145 ~v~~a~~ 151 (172)
.|.++..
T Consensus 111 ~v~~~~~ 117 (292)
T 2ghp_A 111 IVSHLTE 117 (292)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9998864
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.6e-14 Score=109.00 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC-CcccEE
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH-GRKPMV 146 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~-g~~l~v 146 (172)
.+..+|||+|||+.+++++|+++|++||. .|..++++.+ .+|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~-~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGG-VVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSC-CEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCC-CeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 34689999999999999999999999993 4788888653 3789999999999999999999999999 999999
Q ss_pred eccCCC
Q psy8001 147 AYPTRN 152 (172)
Q Consensus 147 ~~a~~~ 152 (172)
.|++++
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 999764
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=5.8e-14 Score=100.63 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=65.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhc----CCC-----CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSI----GVP-----DFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL 139 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~----g~~-----~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l 139 (172)
+.++|||+|||+.+++++|+++|++| |.. .+..+.+ +.++|||||+|.+.++|++|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 521 2444444 345899999999999999999 7999999
Q ss_pred CCcccEEeccCCC
Q psy8001 140 HGRKPMVAYPTRN 152 (172)
Q Consensus 140 ~g~~l~v~~a~~~ 152 (172)
.|+.|.|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999998753
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=4.2e-14 Score=96.47 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=69.9
Q ss_pred CcceEEEcCCCC--CC---CHHHHHHHHHhcCCCCeEEEEEEecCC----CCCcccEEEEEeCCHHHHHHHHHHCCCcee
Q psy8001 69 SHCNLYVGNLTW--WT---TEADMSDAIRSIGVPDFIDVKFFENAS----NGQSKGFCTVTLGSEESMSLVMERLPTLEL 139 (172)
Q Consensus 69 ~~~~v~V~nL~~--~~---~~~~l~~~f~~~g~~~~~~~~i~~~~~----~g~~~g~afv~f~~~~~a~~al~~l~g~~l 139 (172)
+...|++.|+-. .+ -+++|++.|++|| .|..|.|+.++. ++.++||+||+|.+.++|.+|++.|||..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G--~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFG--AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTS--CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccC--CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 356899999832 22 2689999999999 999999999864 356789999999999999999999999999
Q ss_pred CCcccEEeccCC
Q psy8001 140 HGRKPMVAYPTR 151 (172)
Q Consensus 140 ~g~~l~v~~a~~ 151 (172)
+||.|+|.++..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999999853
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.2e-13 Score=88.84 Aligned_cols=65 Identities=8% Similarity=0.123 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccCCCC
Q psy8001 80 WWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNV 153 (172)
Q Consensus 80 ~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~~~~ 153 (172)
..+++++|+++|++|| .|..|.|+ ++++|||||+|.+.++|+.|++.+++ +.|+.|+|+|++...
T Consensus 27 ~~~te~~L~~~F~~~G--~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYG--EVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTS--CEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcC--CEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 4689999999999999 89999987 35789999999999999999997554 689999999998653
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=1.7e-13 Score=109.17 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=66.0
Q ss_pred CCCCcceEEEcC--CCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeC---
Q psy8001 66 TSSSHCNLYVGN--LTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELH--- 140 (172)
Q Consensus 66 ~~~~~~~v~V~n--L~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~--- 140 (172)
...+..+||||| |++.+++++|+++|++|| .|..|.+.. ++|||||+|.+.++|++||+.|||..+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G--~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTS--CEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcC--CeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 345567999999 578999999999999999 898877642 4799999999999999999999999883
Q ss_pred Cc--ccEEeccCC
Q psy8001 141 GR--KPMVAYPTR 151 (172)
Q Consensus 141 g~--~l~v~~a~~ 151 (172)
|+ .|.|.++..
T Consensus 86 g~~~~ly~~~~~~ 98 (345)
T 3tht_A 86 GQKITLYLNFVEK 98 (345)
T ss_dssp SCEEECEEEECSS
T ss_pred CCceEEEEEEeec
Confidence 45 578888753
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=1.1e-12 Score=88.87 Aligned_cols=76 Identities=16% Similarity=0.105 Sum_probs=63.1
Q ss_pred cceEEEcCCCCCC----------CHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee
Q psy8001 70 HCNLYVGNLTWWT----------TEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL 139 (172)
Q Consensus 70 ~~~v~V~nL~~~~----------~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l 139 (172)
...|.+.|+=... -+++|++.|++|| .|..+.|.++. .+||+||+|.+.++|.+|++.|||..+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG--~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG--GVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT--CCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC--CEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4467777763211 1357899999999 89999886653 489999999999999999999999999
Q ss_pred CCcccEEeccCC
Q psy8001 140 HGRKPMVAYPTR 151 (172)
Q Consensus 140 ~g~~l~v~~a~~ 151 (172)
+||.|+|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999964
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=7.3e-12 Score=80.62 Aligned_cols=73 Identities=23% Similarity=0.205 Sum_probs=61.6
Q ss_pred CCcceEEEcCCC----CCCCH----HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCcee
Q psy8001 68 SSHCNLYVGNLT----WWTTE----ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLEL 139 (172)
Q Consensus 68 ~~~~~v~V~nL~----~~~~~----~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l 139 (172)
++..+|+|.-.+ ..+.. .+|.+.|++|| .+..++++.++ +||+|.+.++|.+||+ |||..+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG--EVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC--CEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC--CeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 345678887765 23333 57899999999 89999998764 8999999999999998 999999
Q ss_pred CCcccEEeccCC
Q psy8001 140 HGRKPMVAYPTR 151 (172)
Q Consensus 140 ~g~~l~v~~a~~ 151 (172)
+||.|+|+++++
T Consensus 74 ~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 74 LNRTITIALKSP 85 (91)
T ss_dssp TTEEEEEEECCC
T ss_pred CCeEEEEEeCCC
Confidence 999999999875
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=4.1e-11 Score=81.59 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=69.9
Q ss_pred CCCCCCCcceEEEcCCCCC-CCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCC-HHHHHHHHHHCC--Cce
Q psy8001 63 SQATSSSHCNLYVGNLTWW-TTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGS-EESMSLVMERLP--TLE 138 (172)
Q Consensus 63 ~~~~~~~~~~v~V~nL~~~-~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~-~~~a~~al~~l~--g~~ 138 (172)
....-..++.|||+||++. ++.++|+++|++|| .|..|.++.+.. .|||.|.+ ..+|+.|++.|| +..
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G--~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHG--EIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSC--CEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcE
Confidence 3355677899999999999 99999999999999 999999987653 59999999 899999999995 678
Q ss_pred eCCcccEEeccC
Q psy8001 139 LHGRKPMVAYPT 150 (172)
Q Consensus 139 l~g~~l~v~~a~ 150 (172)
|.|..+.++...
T Consensus 83 i~g~~~~~evL~ 94 (121)
T 1owx_A 83 LRNKEVTWEVLE 94 (121)
T ss_dssp TTSSSEEEEECC
T ss_pred EeCcEEEEEECC
Confidence 999988887665
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=4.7e-11 Score=77.22 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=61.9
Q ss_pred CCCcceEEEcCCCCC-----CCH----HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 67 SSSHCNLYVGNLTWW-----TTE----ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~-----~~~----~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
.++..+|+|.-++.. +.. .+|.+.|.+|| .+..++++.|+ +||+|.+.++|.+||+ |||.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG--TIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS--CCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC--CEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 345668999887632 333 56889999999 88899998874 9999999999999999 9999
Q ss_pred eeCCcccEEeccCC
Q psy8001 138 ELHGRKPMVAYPTR 151 (172)
Q Consensus 138 ~l~g~~l~v~~a~~ 151 (172)
.++||.|+|++..+
T Consensus 81 ~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 81 KVKGRAVKISGPSS 94 (95)
T ss_dssp EETTEEEEEECCCC
T ss_pred eeCCeEEEEeccCC
Confidence 99999999997653
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.08 E-value=3.5e-10 Score=84.65 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=59.7
Q ss_pred CHHHHHHHHHhcCCCCeEEEEEEecCC----CCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 83 TEADMSDAIRSIGVPDFIDVKFFENAS----NGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 83 ~~~~l~~~f~~~g~~~~~~~~i~~~~~----~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
.+++|++.|++|| .|..+.|+++.. ++.++|++||+|.+.++|.+|++.|||..++||.|.|.+..
T Consensus 142 ~~~dl~~e~~~~G--~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFG--AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTS--CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccC--CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4678999999999 999999986543 44889999999999999999999999999999999999985
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=4.5e-07 Score=59.88 Aligned_cols=73 Identities=5% Similarity=-0.017 Sum_probs=64.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhc-----CCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcc
Q psy8001 69 SHCNLYVGNLTWWTTEADMSDAIRSI-----GVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRK 143 (172)
Q Consensus 69 ~~~~v~V~nL~~~~~~~~l~~~f~~~-----g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~ 143 (172)
...+|-+-|||..++.+-|+.++..+ | .+..+.+..|- +-|+|+|.+...|.+|.-.|+|.+|.||+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g--~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEK--DIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTT--TCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCcc--ceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 34678889999999999999999999 8 88898887663 68999999999999998889999999999
Q ss_pred cEEecc
Q psy8001 144 PMVAYP 149 (172)
Q Consensus 144 l~v~~a 149 (172)
|+|.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 998743
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.95 E-value=5.3e-05 Score=49.64 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=60.5
Q ss_pred cceEEEcCCCCCCC-H----HHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCccc
Q psy8001 70 HCNLYVGNLTWWTT-E----ADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKP 144 (172)
Q Consensus 70 ~~~v~V~nL~~~~~-~----~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l 144 (172)
.++|+|.||+..+- . +.++.+|..++ ......... +-.-..|.|.+.++|.+|...||+..+.|++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~--~~~tF~~lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYD--KDTTFQYFK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTC--SSCEEEEET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhC--cCcceeecC------cceEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 35899999987552 2 56789999999 666655443 23356899999999999999999999999999
Q ss_pred EEeccCCC
Q psy8001 145 MVAYPTRN 152 (172)
Q Consensus 145 ~v~~a~~~ 152 (172)
+|-++.+.
T Consensus 77 r~YFgq~~ 84 (104)
T 1wey_A 77 KLYFAQTL 84 (104)
T ss_dssp EEECCCCS
T ss_pred EEEecCCC
Confidence 99999753
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.73 E-value=0.00015 Score=46.50 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=58.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCC--cccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ--SKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~--~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
++|-|++||+..+|+++.+.++.+. .+.....+..+.+.+ ..+-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4789999999999999999999888 776666766654433 346799999999999999999999987653
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.0017 Score=42.28 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=59.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHh----cCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRS----IGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~----~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
...+.+|.|.|||..+.++.|.-+|+. .|= .+..+.... +-|+|+|.+...|++.|+. ..+.|.|.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG-~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGG-PVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCC-CEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCc-eeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 345679999999999999999999986 221 466665421 5789999999999999983 47899999
Q ss_pred ccEEeccCC
Q psy8001 143 KPMVAYPTR 151 (172)
Q Consensus 143 ~l~v~~a~~ 151 (172)
.|.|....+
T Consensus 75 ~LsV~P~~~ 83 (104)
T 2dhx_A 75 QLSLRPAPP 83 (104)
T ss_dssp BCEEEECCC
T ss_pred EEEEEcCCC
Confidence 999987654
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.02 E-value=0.0022 Score=41.36 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=43.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL 134 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l 134 (172)
..++| ++|..+.-.||.++|+.|| . ..|+++-|- -|||.|.+.+.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fg--g-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFG--N-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTC--S-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccC--C-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34555 9999999999999999998 2 345566553 7999999999999999865
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.89 E-value=0.01 Score=39.71 Aligned_cols=74 Identities=5% Similarity=-0.084 Sum_probs=58.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCC-cccE
Q psy8001 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHG-RKPM 145 (172)
Q Consensus 67 ~~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g-~~l~ 145 (172)
....+-|.|-+++... -..+...|++|| .|.+... . ....+-.|.|.+..+|++||. .||..|.| -.|-
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G--~Iv~~~~---~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIG 90 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYG--NILKHVM---S---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIG 90 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTS--CEEEEEE---C---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhC--cEEEecc---C---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEE
Confidence 3446789999999885 567888999999 7877664 1 123599999999999999998 59999985 6788
Q ss_pred EeccC
Q psy8001 146 VAYPT 150 (172)
Q Consensus 146 v~~a~ 150 (172)
|....
T Consensus 91 V~p~~ 95 (119)
T 1wwh_A 91 VKPCI 95 (119)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88754
No 215
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.79 E-value=0.0014 Score=45.68 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=29.2
Q ss_pred EEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 101 DVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 101 ~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
.++|+++. ..++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 46677774 368999999999999999999887754
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.66 E-value=0.0019 Score=41.75 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=51.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCC--cccEEEEEeCCHHHHHHHHHHCCCceeCCc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ--SKGFCTVTLGSEESMSLVMERLPTLELHGR 142 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~--~~g~afv~f~~~~~a~~al~~l~g~~l~g~ 142 (172)
.-.|-|+.||+..||+++.+.++.+- .+.....+..+.+.+ ...-|||.|.+.++.....+.++|..+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLP--AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCS--SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcC--ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 35799999999999998877766554 433222332222222 245799999999999999999999987653
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.51 E-value=0.003 Score=40.85 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=44.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCC
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 135 (172)
.++| ++|..+.-.||.++|+.|| -..|+++-|- -|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3455 9999999999999999999 4456666653 79999999999999998654
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.40 E-value=0.0017 Score=44.99 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=36.9
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHC-CCceeCCcccEEeccCC
Q psy8001 111 GQSKGFCTVTLGSEESMSLVMERL-PTLELHGRKPMVAYPTR 151 (172)
Q Consensus 111 g~~~g~afv~f~~~~~a~~al~~l-~g~~l~g~~l~v~~a~~ 151 (172)
...+|+++++|.+.++|++|++.| ||..++| .|.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 456899999999999999999999 9999999 999998875
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.74 E-value=0.02 Score=38.96 Aligned_cols=78 Identities=9% Similarity=0.020 Sum_probs=55.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEE-EEEEe------------cCCCC-CcccEEEEEeCCHHHHHHHHHHCC
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFID-VKFFE------------NASNG-QSKGFCTVTLGSEESMSLVMERLP 135 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~-~~i~~------------~~~~g-~~~g~afv~f~~~~~a~~al~~l~ 135 (172)
...|.|-+.|.... ..+-+.|++|| .|.+ ..+.. .+..+ ....+-.|.|.+..+|.+||. .|
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G--~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFG--TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGS--CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhc--eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 45788889977665 45678899999 6654 21110 00011 134688999999999999998 59
Q ss_pred CceeCCcccEEeccCC
Q psy8001 136 TLELHGRKPMVAYPTR 151 (172)
Q Consensus 136 g~~l~g~~l~v~~a~~ 151 (172)
|..|.|..|-|....+
T Consensus 83 G~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CeEeCcEEEEEEECCH
Confidence 9999999999988864
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.66 E-value=0.0069 Score=49.84 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=40.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~ 132 (172)
.+.|+|. .+..+++.+|.++|++|| .|..+.+..+ .| -|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g--~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFG--PINNHFFYES--FG---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGS--CCCCEEEECS--SS---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcC--CcceEEEEcc--CC---eEEEEEeCCHHHHHHHHh
Confidence 4689997 799999999999999999 8998876543 33 599999999999887765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.68 E-value=1.8 Score=35.88 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=43.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCC
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~ 135 (172)
..++|+ ++..|...+|.++|+.|| . ..|+++.+ ..|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg--~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFG--N-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGC--C-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcC--C-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 355565 888999999999999999 3 34555443 279999999999999999875
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.84 E-value=2 Score=25.65 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHhcC-CC--CeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccC
Q psy8001 81 WTTEADMSDAIRSIG-VP--DFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPT 150 (172)
Q Consensus 81 ~~~~~~l~~~f~~~g-~~--~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~ 150 (172)
.+...+|-.++..-+ .. .+-.+.+. ..|.||+... ..+..+++.|++..+.|+.++|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 455567777776543 10 23445542 2388999975 45677888899999999999998764
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.88 E-value=59 Score=22.82 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=31.3
Q ss_pred CCHHHHHHHH--HhcCCCCeEEEEEEecCCCCCcccEEEEEeCC-HHHHHHHHH
Q psy8001 82 TTEADMSDAI--RSIGVPDFIDVKFFENASNGQSKGFCTVTLGS-EESMSLVME 132 (172)
Q Consensus 82 ~~~~~l~~~f--~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~-~~~a~~al~ 132 (172)
.+..+|++.| +.|. . ..++.++++ ..+.|++.|.|.+ -.-...|+.
T Consensus 33 ~s~~~l~~~~~~~~F~--p-~kv~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFN--P-TRVRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCC--C-SEEEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCC--C-ceeEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3457899977 8888 3 456667765 3478999999974 444455554
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=37.32 E-value=75 Score=19.84 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=46.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHC
Q psy8001 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERL 134 (172)
Q Consensus 68 ~~~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l 134 (172)
..+|-+-|-|+|..+-..++--.....| .-..+..+ -|.|.+.|.+.++...||+.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlg--yefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLG--YEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTC--CCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcC--eeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 3567889999999999999888888888 55555542 357899999999999998765
No 225
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=31.31 E-value=50 Score=24.72 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=26.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEe
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~ 106 (172)
..+.|+|||+.++...|..++.. . .+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~--~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-G--RFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-C--CEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-C--CCCEEEEEe
Confidence 56889999999999999999987 6 666665554
No 226
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.83 E-value=12 Score=25.54 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=8.1
Q ss_pred cccEEEEEeC
Q psy8001 113 SKGFCTVTLG 122 (172)
Q Consensus 113 ~~g~afv~f~ 122 (172)
.+||+||+-.
T Consensus 20 ~kGfGFI~~~ 29 (148)
T 3ts2_A 20 RMGFGFLSMT 29 (148)
T ss_dssp TTTEEEEEEE
T ss_pred CCCeeEEeeC
Confidence 4799999865
No 227
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.07 E-value=1.1e+02 Score=18.69 Aligned_cols=57 Identities=23% Similarity=0.171 Sum_probs=39.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHH
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~ 132 (172)
+-|+-.....++..++++.+.. |++ .+..+..+.-+ .|. -=|||.+....+|.....
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~V-kV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNV-KVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTC-CEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCC-CceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHH
Confidence 3455566788999999999986 786 78888765543 221 258999987766654433
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.79 E-value=25 Score=26.48 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=26.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEe
Q psy8001 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106 (172)
Q Consensus 71 ~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~ 106 (172)
....|+|||+.++...|..++.... .+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~--~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAP--VVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGG--GEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccC--CccEEEEEe
Confidence 3578999999999999999887655 466655554
No 229
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.13 E-value=1.3e+02 Score=18.47 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=19.9
Q ss_pred CeEEEEEEecCCCCCcccEEEEEeCC
Q psy8001 98 DFIDVKFFENASNGQSKGFCTVTLGS 123 (172)
Q Consensus 98 ~~~~~~i~~~~~~g~~~g~afv~f~~ 123 (172)
.|..+++..-...|+-++||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 56677776655578889999999964
No 230
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.53 E-value=76 Score=19.45 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=21.3
Q ss_pred cccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 113 SKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 113 ~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
.+||-||++...++...+|+...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 7899999999998888888766655
No 231
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=22.40 E-value=1.5e+02 Score=18.85 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=43.9
Q ss_pred cCCCCCCCHHHHHHHHH-hcCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHCCCceeCCcccEEeccCC
Q psy8001 76 GNLTWWTTEADMSDAIR-SIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTR 151 (172)
Q Consensus 76 ~nL~~~~~~~~l~~~f~-~~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~al~~l~g~~l~g~~l~v~~a~~ 151 (172)
-.++.-+..++|+.... .|| ....++.. +. -..|-..+.++..+||+.|+.. -.-+.|++-...+
T Consensus 22 i~f~RPv~f~eL~~Kv~~~fG--q~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 22 LQFPRPVKLEDLRSKAKIAFG--QSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVIN 87 (103)
T ss_dssp EEEESSCCHHHHHHHHHHHHS--SCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEEC
T ss_pred EeccCCccHHHHHHHHHHHhC--CeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecC
Confidence 34567888888887775 699 66666554 21 3578899999999999987655 3334444444433
No 232
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=21.86 E-value=34 Score=25.31 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=25.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEe
Q psy8001 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106 (172)
Q Consensus 73 v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~ 106 (172)
..|+|||+.++...|..++.... .+....++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~--~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIH--CIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGG--GEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCC--ChheEEEEE
Confidence 37999999999999999998766 566655554
No 233
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.85 E-value=1.5e+02 Score=18.77 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=20.0
Q ss_pred CeEEEEEEecCCCCCcccEEEEEeCC
Q psy8001 98 DFIDVKFFENASNGQSKGFCTVTLGS 123 (172)
Q Consensus 98 ~~~~~~i~~~~~~g~~~g~afv~f~~ 123 (172)
.|..++|..-...|+-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 56777776655568889999999964
No 234
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.40 E-value=1.5e+02 Score=18.87 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=19.5
Q ss_pred CeEEEEEEecCCCCCcccEEEEEeCC
Q psy8001 98 DFIDVKFFENASNGQSKGFCTVTLGS 123 (172)
Q Consensus 98 ~~~~~~i~~~~~~g~~~g~afv~f~~ 123 (172)
.+..++|..-...|+-++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 56667766655578889999999964
No 235
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=26.87 E-value=20 Score=23.03 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=35.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCCCeEEEEEEecCCCCCcc-cEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 70 HCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSK-GFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 70 ~~~v~V~nL~~~~~~~~l~~~f~~~g~~~~~~~~i~~~~~~g~~~-g~afv~f~~~~~a~~al~~l~g~ 137 (172)
+++|-+... .+++++..+..+.+ +..+.+.+...+|+.- -.-+-.|.+.++|.+|+..|-..
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~---l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN---LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 455555433 34566777777776 3345555543333321 12334788999999998877543
No 236
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.59 E-value=76 Score=20.21 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHCCCc
Q psy8001 113 SKGFCTVTLGSEESMSLVMERLPTL 137 (172)
Q Consensus 113 ~~g~afv~f~~~~~a~~al~~l~g~ 137 (172)
.+||-||+=....+...|++.+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999998765544
No 237
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.02 E-value=2.1e+02 Score=19.53 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=37.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cCCCCeEEEEEEecCCCCCcccEEEEEeCCHHHHHH
Q psy8001 72 NLYVGNLTWWTTEADMSDAIRS-IGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSL 129 (172)
Q Consensus 72 ~v~V~nL~~~~~~~~l~~~f~~-~g~~~~~~~~i~~~~~~g~~~g~afv~f~~~~~a~~ 129 (172)
+-|+-.....++..+|++.+.. |++ .+..|..+.-+ .|. -=|||.+....+|..
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~V-kV~kVNTl~~~-~g~--KKAyV~L~~~~dald 144 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDI-QAKKVNTLIRP-DGK--KKAYVKLTPDYDALD 144 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTC-CEEEEEEEECT-TSS--EEEEEEECTTSCHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCC-cceEEEeeEcC-CCc--eEEEEEcCCCCcHHH
Confidence 3455566778899999999975 786 78888765543 221 258999987655543
Done!