Your job contains 1 sequence.
>psy8001
MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPARYRHHRYSH
HHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVT
LGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRSRRSYR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8001
(172 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035872 - symbol:CG7185 species:7227 "Drosophila m... 287 3.9e-26 2
UNIPROTKB|J9NXJ8 - symbol:CPSF6 "Uncharacterized protein"... 266 3.1e-24 2
ZFIN|ZDB-GENE-030131-5277 - symbol:cpsf6 "cleavage and po... 269 6.0e-24 2
UNIPROTKB|J9P3M5 - symbol:CPSF6 "Uncharacterized protein"... 267 7.7e-24 2
UNIPROTKB|J9NRP4 - symbol:CPSF6 "Uncharacterized protein"... 267 1.0e-23 2
UNIPROTKB|F1PGL4 - symbol:CPSF6 "Uncharacterized protein"... 267 1.3e-23 2
UNIPROTKB|F8WJN3 - symbol:CPSF6 "Cleavage and polyadenyla... 269 7.8e-23 1
UNIPROTKB|F1NGU9 - symbol:CPSF6 "Cleavage and polyadenyla... 269 1.3e-22 1
UNIPROTKB|Q5ZL34 - symbol:CPSF6 "Cleavage and polyadenyla... 269 1.3e-22 1
UNIPROTKB|F2Z4E9 - symbol:CPSF6 "Cleavage and polyadenyla... 269 1.3e-22 1
UNIPROTKB|Q0P5D2 - symbol:CPSF6 "Cleavage and polyadenyla... 269 1.3e-22 1
UNIPROTKB|Q16630 - symbol:CPSF6 "Cleavage and polyadenyla... 269 1.3e-22 1
MGI|MGI:1913948 - symbol:Cpsf6 "cleavage and polyadenylat... 269 1.3e-22 1
RGD|1304640 - symbol:Cpsf6 "cleavage and polyadenylation ... 269 1.3e-22 1
UNIPROTKB|Q6DDW4 - symbol:cpsf6 "Cleavage and polyadenyla... 266 2.7e-22 1
UNIPROTKB|Q5NVH8 - symbol:CPSF6 "Cleavage and polyadenyla... 255 4.3e-21 1
UNIPROTKB|F5H047 - symbol:CPSF7 "Cleavage and polyadenyla... 225 1.1e-18 1
UNIPROTKB|F5H6M0 - symbol:CPSF7 "Cleavage and polyadenyla... 225 1.1e-18 1
UNIPROTKB|J3QT54 - symbol:CPSF7 "Cleavage and polyadenyla... 225 1.1e-18 1
UNIPROTKB|F5H669 - symbol:CPSF7 "Cleavage and polyadenyla... 225 2.2e-18 1
UNIPROTKB|H9L006 - symbol:CPSF7 "Uncharacterized protein"... 227 3.0e-18 1
UNIPROTKB|F1MU62 - symbol:CPSF7 "Uncharacterized protein"... 225 5.0e-18 1
UNIPROTKB|F1RKQ8 - symbol:CPSF7 "Uncharacterized protein"... 225 5.0e-18 1
RGD|1305441 - symbol:Cpsf7 "cleavage and polyadenylation ... 222 1.1e-17 1
UNIPROTKB|Q5XI29 - symbol:Cpsf7 "Cleavage and polyadenyla... 222 1.1e-17 1
UNIPROTKB|E2RHC1 - symbol:CPSF7 "Uncharacterized protein"... 221 1.4e-17 1
UNIPROTKB|Q8N684 - symbol:CPSF7 "Cleavage and polyadenyla... 221 1.4e-17 1
UNIPROTKB|E2R0Y4 - symbol:CPSF7 "Uncharacterized protein"... 221 1.7e-17 1
MGI|MGI:1917826 - symbol:Cpsf7 "cleavage and polyadenylat... 218 3.1e-17 1
WB|WBGene00008362 - symbol:cfim-2 species:6239 "Caenorhab... 209 3.3e-16 1
UNIPROTKB|C9J323 - symbol:CPSF7 "Cleavage and polyadenyla... 183 3.0e-14 1
UNIPROTKB|C9J286 - symbol:CPSF7 "Cleavage and polyadenyla... 174 2.7e-13 1
UNIPROTKB|C9JM38 - symbol:CPSF7 "Cleavage and polyadenyla... 169 9.1e-13 1
TAIR|locus:2162107 - symbol:AT5G55670 species:3702 "Arabi... 125 3.7e-08 2
TAIR|locus:2031830 - symbol:AT1G13190 species:3702 "Arabi... 123 8.3e-07 1
ASPGD|ASPL0000071321 - symbol:AN4799 species:162425 "Emer... 115 3.4e-06 1
UNIPROTKB|G5EI55 - symbol:MGCH7_ch7g489 "RRM domain-conta... 113 6.3e-06 1
DICTYBASE|DDB_G0282873 - symbol:DDB_G0282873 "RNA-binding... 117 7.0e-06 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 106 1.6e-05 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 106 2.0e-05 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 105 4.3e-05 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 107 0.00010 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 106 0.00013 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 95 0.00032 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 87 0.00047 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 87 0.00047 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 87 0.00047 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 85 0.00080 1
>FB|FBgn0035872 [details] [associations]
symbol:CG7185 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IC] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE014296
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
GO:GO:0006379 GO:GO:0005849 eggNOG:NOG313287 KO:K14398
GeneTree:ENSGT00690000101901 EMBL:AY058563 RefSeq:NP_648206.1
UniGene:Dm.887 ProteinModelPortal:Q9VSH4 SMR:Q9VSH4 IntAct:Q9VSH4
MINT:MINT-1562127 STRING:Q9VSH4 PaxDb:Q9VSH4
EnsemblMetazoa:FBtr0076710 GeneID:38937 KEGG:dme:Dmel_CG7185
UCSC:CG7185-RA FlyBase:FBgn0035872 InParanoid:Q9VSH4 OMA:PYERGDY
OrthoDB:EOG4S1RQ4 PhylomeDB:Q9VSH4 ChiTaRS:CG7185 GenomeRNAi:38937
NextBio:811101 Bgee:Q9VSH4 Uniprot:Q9VSH4
Length = 652
Score = 287 (106.1 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 50/92 (54%), Positives = 70/92 (76%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LYVGNLTWWTT+ D+++++R IGV D +VKFFEN +NGQSKGF ++LGSE S+ V++
Sbjct: 95 LYVGNLTWWTTDQDIANSLRDIGVSDLQEVKFFENRANGQSKGFSVISLGSESSLRAVLD 154
Query: 133 RLPTLELHGRKPMVAYPTRNVLYQFEAQNPLR 164
+LP E+HG+ P+V YP++ L QFE+ R
Sbjct: 155 QLPKKEMHGQAPVVTYPSKQALTQFESLQKTR 186
Score = 40 (19.1 bits), Expect = 3.9e-26, Sum P(2) = 3.9e-26
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 29 DDIDLYDDV 37
D +DLYDD+
Sbjct: 28 DGVDLYDDI 36
>UNIPROTKB|J9NXJ8 [details] [associations]
symbol:CPSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00690000101901
EMBL:AAEX03007049 EMBL:AAEX03007048 Ensembl:ENSCAFT00000046748
Uniprot:J9NXJ8
Length = 450
Score = 266 (98.7 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 60/146 (41%), Positives = 80/146 (54%)
Query: 28 HDDIDLYDDVTLQPF------PE---HTGRSPAXXXXXXXXXXX---XXXXXXXXCNLYV 75
HD IDLYDDV + P PE + P LY+
Sbjct: 7 HDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYI 65
Query: 76 GNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135
GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S +M+ LP
Sbjct: 66 GNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 125
Query: 136 TLELHGRKPMVAYPTRNVLYQFEAQN 161
ELHG+ P+V + L QFE Q+
Sbjct: 126 KRELHGQNPVVTPCNKQFLSQFEMQS 151
Score = 34 (17.0 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 MDLYDDAI 8
+DLYDD I
Sbjct: 10 IDLYDDVI 17
>ZFIN|ZDB-GENE-030131-5277 [details] [associations]
symbol:cpsf6 "cleavage and polyadenylation
specific factor 6" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0005849 "mRNA cleavage
factor complex" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5277 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0005849 CTD:11052
eggNOG:NOG313287 KO:K14398 OrthoDB:EOG432101 EMBL:AY398330
EMBL:BC067642 IPI:IPI00482991 IPI:IPI00734952 RefSeq:NP_001017993.1
UniGene:Dr.75857 ProteinModelPortal:Q6NWC6 STRING:Q6NWC6
PRIDE:Q6NWC6 Ensembl:ENSDART00000082289 Ensembl:ENSDART00000129521
GeneID:327069 KEGG:dre:327069 GeneTree:ENSGT00690000101901
HOVERGEN:HBG095955 InParanoid:Q6NWC6 OMA:LEHTLKG NextBio:20809866
ArrayExpress:Q6NWC6 Bgee:Q6NWC6 Uniprot:Q6NWC6
Length = 545
Score = 269 (99.8 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 63/152 (41%), Positives = 84/152 (55%)
Query: 28 HDDIDLYDDVTLQPF------PE---HTGRSPA---XXXXXXXXXXXXXXXXXXXCNLYV 75
HD IDLYDDV + P PE + PA LY+
Sbjct: 27 HDQIDLYDDV-ISPSANNGDAPEDRDYLDSLPAPGGNEGSKGAPANVVYTYNGKRIALYI 85
Query: 76 GNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135
GNLTWWTT+ D++DAIRSIG+ D +++KFFEN +NGQSKGF V +GS+ S +M+ L
Sbjct: 86 GNLTWWTTDEDLTDAIRSIGINDVLEIKFFENRANGQSKGFALVCVGSDSSSRKLMDLLS 145
Query: 136 TLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
ELHG+ P+V + L QFE Q+ ++S
Sbjct: 146 KRELHGQNPIVTPCNKQSLSQFEMQSRKSTQS 177
Score = 34 (17.0 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 MDLYDDAI 8
+DLYDD I
Sbjct: 30 IDLYDDVI 37
>UNIPROTKB|J9P3M5 [details] [associations]
symbol:CPSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00690000101901
EMBL:AAEX03007049 EMBL:AAEX03007048 Ensembl:ENSCAFT00000043597
Uniprot:J9P3M5
Length = 522
Score = 267 (99.0 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
Identities = 61/152 (40%), Positives = 83/152 (54%)
Query: 28 HDDIDLYDDVTLQPF------PE---HTGRSPAXXXXXXXXXXX---XXXXXXXXCNLYV 75
HD IDLYDDV + P PE + P LY+
Sbjct: 8 HDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYI 66
Query: 76 GNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135
GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S +M+ LP
Sbjct: 67 GNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 126
Query: 136 TLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
ELHG+ P+V + L QFE Q+ ++S
Sbjct: 127 KRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 158
Score = 34 (17.0 bits), Expect = 7.7e-24, Sum P(2) = 7.7e-24
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 MDLYDDAI 8
+DLYDD I
Sbjct: 11 IDLYDDVI 18
>UNIPROTKB|J9NRP4 [details] [associations]
symbol:CPSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00690000101901
EMBL:AAEX03007049 EMBL:AAEX03007048 Ensembl:ENSCAFT00000048094
Uniprot:J9NRP4
Length = 549
Score = 267 (99.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 61/152 (40%), Positives = 83/152 (54%)
Query: 28 HDDIDLYDDVTLQPF------PE---HTGRSPAXXXXXXXXXXX---XXXXXXXXCNLYV 75
HD IDLYDDV + P PE + P LY+
Sbjct: 25 HDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYI 83
Query: 76 GNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135
GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S +M+ LP
Sbjct: 84 GNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 143
Query: 136 TLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
ELHG+ P+V + L QFE Q+ ++S
Sbjct: 144 KRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 175
Score = 34 (17.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 MDLYDDAI 8
+DLYDD I
Sbjct: 28 IDLYDDVI 35
>UNIPROTKB|F1PGL4 [details] [associations]
symbol:CPSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051262 "protein tetramerization"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005849 "mRNA cleavage factor
complex" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0051262
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 GO:GO:0005849 GO:GO:0042382
GeneTree:ENSGT00690000101901 OMA:GKGSAPN EMBL:AAEX03007049
EMBL:AAEX03007048 Ensembl:ENSCAFT00000000672 Uniprot:F1PGL4
Length = 569
Score = 267 (99.0 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 61/152 (40%), Positives = 83/152 (54%)
Query: 28 HDDIDLYDDVTLQPF------PE---HTGRSPAXXXXXXXXXXX---XXXXXXXXCNLYV 75
HD IDLYDDV + P PE + P LY+
Sbjct: 8 HDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYI 66
Query: 76 GNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLP 135
GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQSKGF V +GSE S +M+ LP
Sbjct: 67 GNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 126
Query: 136 TLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
ELHG+ P+V + L QFE Q+ ++S
Sbjct: 127 KRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 158
Score = 34 (17.0 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 1 MDLYDDAI 8
+DLYDD I
Sbjct: 11 IDLYDDVI 18
>UNIPROTKB|F8WJN3 [details] [associations]
symbol:CPSF6 "Cleavage and polyadenylation-specificity
factor subunit 6" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:13871
EMBL:AC020656 IPI:IPI00647126 ProteinModelPortal:F8WJN3 SMR:F8WJN3
Ensembl:ENST00000456847 ArrayExpress:F8WJN3 Bgee:F8WJN3
Uniprot:F8WJN3
Length = 478
Score = 269 (99.8 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 66/175 (37%), Positives = 90/175 (51%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 177
>UNIPROTKB|F1NGU9 [details] [associations]
symbol:CPSF6 "Cleavage and polyadenylation-specificity
factor subunit 6" species:9031 "Gallus gallus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] [GO:0051262 "protein tetramerization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0051262 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0030529 GO:GO:0005849
GO:GO:0042382 IPI:IPI00575001 GeneTree:ENSGT00690000101901
OMA:PYERGDY EMBL:AADN02009872 EMBL:AADN02009870 EMBL:AADN02009871
Ensembl:ENSGALT00000016192 ArrayExpress:F1NGU9 Uniprot:F1NGU9
Length = 549
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 66/175 (37%), Positives = 90/175 (51%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDSLPPSVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 177
>UNIPROTKB|Q5ZL34 [details] [associations]
symbol:CPSF6 "Cleavage and polyadenylation specificity
factor subunit 6" species:9031 "Gallus gallus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
[GO:0051262 "protein tetramerization" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0051262
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 GO:GO:0005849 GO:GO:0042382 CTD:11052
eggNOG:NOG313287 HOGENOM:HOG000111137 KO:K14398 OrthoDB:EOG432101
EMBL:AJ719900 IPI:IPI00575001 RefSeq:NP_001034360.1
UniGene:Gga.22011 ProteinModelPortal:Q5ZL34 GeneID:417844
KEGG:gga:417844 InParanoid:Q5ZL34 NextBio:20821084
ArrayExpress:Q5ZL34 Uniprot:Q5ZL34
Length = 551
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 66/175 (37%), Positives = 90/175 (51%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDSLPPSVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 177
>UNIPROTKB|F2Z4E9 [details] [associations]
symbol:CPSF6 "Cleavage and polyadenylation-specificity
factor subunit 6" species:9913 "Bos taurus" [GO:0051262 "protein
tetramerization" evidence=IEA] [GO:0042382 "paraspeckles"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0051262 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0030529 GO:GO:0005849 GO:GO:0042382
IPI:IPI00695836 UniGene:Bt.27146 GeneTree:ENSGT00690000101901
OMA:GKGSAPN EMBL:DAAA02013246 ProteinModelPortal:F2Z4E9 SMR:F2Z4E9
PRIDE:F2Z4E9 Ensembl:ENSBTAT00000050636 Uniprot:F2Z4E9
Length = 551
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 66/175 (37%), Positives = 90/175 (51%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 177
>UNIPROTKB|Q0P5D2 [details] [associations]
symbol:CPSF6 "Cleavage and polyadenylation specificity
factor subunit 6" species:9913 "Bos taurus" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0005849
EMBL:BC120212 IPI:IPI00695836 RefSeq:NP_001071574.1
UniGene:Bt.27146 ProteinModelPortal:Q0P5D2 PRIDE:Q0P5D2
GeneID:768231 KEGG:bta:768231 CTD:11052 eggNOG:NOG313287
HOGENOM:HOG000111137 InParanoid:Q0P5D2 KO:K14398 OrthoDB:EOG432101
NextBio:20918529 Uniprot:Q0P5D2
Length = 551
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 66/175 (37%), Positives = 90/175 (51%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 177
>UNIPROTKB|Q16630 [details] [associations]
symbol:CPSF6 "Cleavage and polyadenylation specificity
factor subunit 6" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0042382 "paraspeckles" evidence=IDA] [GO:0006397
"mRNA processing" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0051262 "protein tetramerization"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 Reactome:REACT_116125 GO:GO:0051262
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378
EMBL:CH471054 GO:GO:0030529 GO:GO:0005849 GO:GO:0042382 PDB:3P5T
PDB:3P6Y PDB:3Q2S PDB:3Q2T PDBsum:3P5T PDBsum:3P6Y PDBsum:3Q2S
PDBsum:3Q2T CTD:11052 eggNOG:NOG313287 HOGENOM:HOG000111137
KO:K14398 OrthoDB:EOG432101 EMBL:X67336 EMBL:X67337 EMBL:AK223568
EMBL:AK292024 EMBL:BC000714 EMBL:BC005000 IPI:IPI00012998
IPI:IPI00030654 IPI:IPI01025254 PIR:S57447 RefSeq:NP_008938.2
UniGene:Hs.369606 PDB:4B4N PDBsum:4B4N ProteinModelPortal:Q16630
SMR:Q16630 DIP:DIP-34501N IntAct:Q16630 MINT:MINT-1153789
STRING:Q16630 PhosphoSite:Q16630 DMDM:88909266 PaxDb:Q16630
PeptideAtlas:Q16630 PRIDE:Q16630 DNASU:11052
Ensembl:ENST00000266679 Ensembl:ENST00000435070 GeneID:11052
KEGG:hsa:11052 UCSC:uc001sut.4 UCSC:uc001suu.4
GeneCards:GC12P069633 HGNC:HGNC:13871 HPA:HPA039973 MIM:604979
neXtProt:NX_Q16630 PharmGKB:PA26846 OMA:GKGSAPN GenomeRNAi:11052
NextBio:41995 ArrayExpress:Q16630 Bgee:Q16630 CleanEx:HS_CPSF6
Genevestigator:Q16630 GermOnline:ENSG00000111605 Uniprot:Q16630
Length = 551
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 66/175 (37%), Positives = 90/175 (51%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 177
>MGI|MGI:1913948 [details] [associations]
symbol:Cpsf6 "cleavage and polyadenylation specific factor
6" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0051262 "protein
tetramerization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1913948
GO:GO:0051262 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0030529 GO:GO:0005849 GO:GO:0042382 CTD:11052
eggNOG:NOG313287 HOGENOM:HOG000111137 KO:K14398 OrthoDB:EOG432101
GeneTree:ENSGT00690000101901 EMBL:AK046856 EMBL:AK048615
EMBL:AK168764 EMBL:BC068133 IPI:IPI00421085 RefSeq:NP_001013409.1
UniGene:Mm.478881 UniGene:Mm.478884 UniGene:Mm.479892
ProteinModelPortal:Q6NVF9 SMR:Q6NVF9 DIP:DIP-49394N IntAct:Q6NVF9
STRING:Q6NVF9 PhosphoSite:Q6NVF9 PaxDb:Q6NVF9 PRIDE:Q6NVF9
Ensembl:ENSMUST00000069168 Ensembl:ENSMUST00000177145 GeneID:432508
KEGG:mmu:432508 UCSC:uc007hdd.2 InParanoid:Q6NVF9 NextBio:407730
Bgee:Q6NVF9 CleanEx:MM_CPSF6 Genevestigator:Q6NVF9
GermOnline:ENSMUSG00000055531 Uniprot:Q6NVF9
Length = 551
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 66/175 (37%), Positives = 90/175 (51%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQSPVVTPCNKQFLSQFEMQSRKTTQS 177
>RGD|1304640 [details] [associations]
symbol:Cpsf6 "cleavage and polyadenylation specific factor 6,
68kDa" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISO] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0042382
"paraspeckles" evidence=ISO] [GO:0051262 "protein tetramerization"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:1304640 GO:GO:0051262
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 GO:GO:0005849 GO:GO:0042382 OrthoDB:EOG432101
GeneTree:ENSGT00690000101901 OMA:GKGSAPN IPI:IPI00366220
PRIDE:D3ZPL1 Ensembl:ENSRNOT00000008193 UCSC:RGD:1304640
Uniprot:D3ZPL1
Length = 551
Score = 269 (99.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 66/175 (37%), Positives = 90/175 (51%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLTWWTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 177
>UNIPROTKB|Q6DDW4 [details] [associations]
symbol:cpsf6 "Cleavage and polyadenylation specificity
factor subunit 6" species:8355 "Xenopus laevis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0005849
CTD:11052 KO:K14398 EMBL:BC077388 RefSeq:NP_001086745.1
UniGene:Xl.7296 ProteinModelPortal:Q6DDW4 PRIDE:Q6DDW4
GeneID:446580 KEGG:xla:446580 Xenbase:XB-GENE-961710
HOVERGEN:HBG104293 Uniprot:Q6DDW4
Length = 548
Score = 266 (98.7 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 46/89 (51%), Positives = 65/89 (73%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LY+GNLTWWTT+ D++DA+ S+GV D +++KFFEN +NGQSKGF + + SE S +M+
Sbjct: 83 LYIGNLTWWTTDEDLTDAVHSLGVNDILEIKFFENRANGQSKGFALICVSSESSSKKLMD 142
Query: 133 RLPTLELHGRKPMVAYPTRNVLYQFEAQN 161
LP E+HG+KP+V + L QFE Q+
Sbjct: 143 LLPKREMHGQKPIVTPCNKQFLSQFEMQS 171
>UNIPROTKB|Q5NVH8 [details] [associations]
symbol:CPSF6 "Cleavage and polyadenylation specificity
factor subunit 6" species:9601 "Pongo abelii" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0005849
CTD:11052 KO:K14398 EMBL:CR926054 RefSeq:NP_001127689.1
UniGene:Pab.254 ProteinModelPortal:Q5NVH8 PRIDE:Q5NVH8
GeneID:100174771 KEGG:pon:100174771 InParanoid:Q5NVH8
Uniprot:Q5NVH8
Length = 552
Score = 255 (94.8 bits), Expect = 4.3e-21, P = 4.3e-21
Identities = 65/175 (37%), Positives = 89/175 (50%)
Query: 10 GMGPTDTNTSPGEHVSTE-----HDDIDLYDDVTLQPF------PE---HTGRSPAXXXX 55
G+ D GE + E HD IDLYDDV + P PE + P
Sbjct: 4 GVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDV-ISPSANNGDAPEDRDYMDTLPPTVGD 62
Query: 56 XXXXXXX---XXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQ 112
LY+GNLT WTT+ D+++A+ S+GV D +++KFFEN +NGQ
Sbjct: 63 DVGKGAAPNVVYTYTGKRIALYIGNLTRWTTDEDLTEAVHSLGVNDILEIKFFENRANGQ 122
Query: 113 SKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
SKGF V +GSE S +M+ LP ELHG+ P+V + L QFE Q+ ++S
Sbjct: 123 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQS 177
>UNIPROTKB|F5H047 [details] [associations]
symbol:CPSF7 "Cleavage and polyadenylation-specificity
factor subunit 7" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:30098
ChiTaRS:CPSF7 IPI:IPI01013482 ProteinModelPortal:F5H047 SMR:F5H047
Ensembl:ENST00000539952 UCSC:uc001nrs.1 ArrayExpress:F5H047
Bgee:F5H047 Uniprot:F5H047
Length = 288
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 67/188 (35%), Positives = 87/188 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----P 162
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ P
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIP 177
Query: 163 LRSRSRRS 170
R+ SR S
Sbjct: 178 PRAHSRDS 185
>UNIPROTKB|F5H6M0 [details] [associations]
symbol:CPSF7 "Cleavage and polyadenylation-specificity
factor subunit 7" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:30098
ChiTaRS:CPSF7 IPI:IPI01013082 ProteinModelPortal:F5H6M0 SMR:F5H6M0
Ensembl:ENST00000544585 ArrayExpress:F5H6M0 Bgee:F5H6M0
Uniprot:F5H6M0
Length = 219
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 67/188 (35%), Positives = 87/188 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----P 162
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ P
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIP 177
Query: 163 LRSRSRRS 170
R+ SR S
Sbjct: 178 PRAHSRDS 185
>UNIPROTKB|J3QT54 [details] [associations]
symbol:CPSF7 "Cleavage and polyadenylation-specificity
factor subunit 7" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:30098
ChiTaRS:CPSF7 Ensembl:ENST00000413232 Uniprot:J3QT54
Length = 205
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 67/188 (35%), Positives = 87/188 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----P 162
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ P
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIP 177
Query: 163 LRSRSRRS 170
R+ SR S
Sbjct: 178 PRAHSRDS 185
>UNIPROTKB|F5H669 [details] [associations]
symbol:CPSF7 "Cleavage and polyadenylation-specificity
factor subunit 7" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:30098
ChiTaRS:CPSF7 IPI:IPI01014911 ProteinModelPortal:F5H669 SMR:F5H669
Ensembl:ENST00000477890 ArrayExpress:F5H669 Bgee:F5H669
Uniprot:F5H669
Length = 374
Score = 225 (84.3 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 67/188 (35%), Positives = 87/188 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----P 162
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ P
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIP 177
Query: 163 LRSRSRRS 170
R+ SR S
Sbjct: 178 PRAHSRDS 185
>UNIPROTKB|H9L006 [details] [associations]
symbol:CPSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005849 "mRNA cleavage
factor complex" evidence=IEA] [GO:0051262 "protein tetramerization"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00690000101901 OMA:RSVGVYD
EMBL:AADN02035725 EMBL:AADN02035726 ProteinModelPortal:H9L006
Ensembl:ENSGALT00000021713 Uniprot:H9L006
Length = 462
Score = 227 (85.0 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 60/174 (34%), Positives = 89/174 (51%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPAXXXXXXXXX 60
MDLYDD + T ++ P S+ ++ ++ +P P+ ++PA
Sbjct: 28 MDLYDDVL-----TASSQPPESRTSS----LEPPPEIRQEPPPKPNSKAPAILYTYSGLR 78
Query: 61 XXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVT 120
+YVG+ +WWTT+ + IRS+GV D +++KF EN +NGQSKG+ V
Sbjct: 79 NKRAA-------VYVGSFSWWTTDQQLIQTIRSVGVYDVVELKFAENRANGQSKGYAEVV 131
Query: 121 LGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----PLRSRSRRS 170
+ SE S+ ++E LP L+G K V TR L QFEAQ P R+ SR S
Sbjct: 132 VASENSVHKLLELLPGKVLNGDKVEVRLATRQNLSQFEAQARKRVPPRAHSRDS 185
>UNIPROTKB|F1MU62 [details] [associations]
symbol:CPSF7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051262 "protein tetramerization" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0051262 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005849 KO:K14398 GeneTree:ENSGT00690000101901 CTD:79869
OMA:RSVGVYD EMBL:DAAA02063463 IPI:IPI00703023 RefSeq:XP_002699327.1
RefSeq:XP_881359.3 UniGene:Bt.91555 Ensembl:ENSBTAT00000020300
GeneID:504925 KEGG:bta:504925 NextBio:20866894 Uniprot:F1MU62
Length = 462
Score = 225 (84.3 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 67/188 (35%), Positives = 87/188 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----P 162
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ P
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIP 177
Query: 163 LRSRSRRS 170
R+ SR S
Sbjct: 178 PRAHSRDS 185
>UNIPROTKB|F1RKQ8 [details] [associations]
symbol:CPSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051262 "protein tetramerization" evidence=IEA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0051262 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005849 KO:K14398 GeneTree:ENSGT00690000101901 CTD:79869
OMA:RSVGVYD EMBL:CU896534 RefSeq:XP_003122682.1 UniGene:Ssc.10864
Ensembl:ENSSSCT00000014301 GeneID:100519008 KEGG:ssc:100519008
Uniprot:F1RKQ8
Length = 462
Score = 225 (84.3 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 67/188 (35%), Positives = 87/188 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----P 162
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ P
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIP 177
Query: 163 LRSRSRRS 170
R+ SR S
Sbjct: 178 PRAHSRDS 185
>RGD|1305441 [details] [associations]
symbol:Cpsf7 "cleavage and polyadenylation specific factor 7"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA;ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0051262 "protein tetramerization" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305441 GO:GO:0051262 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005849 eggNOG:NOG313287
HOGENOM:HOG000111137 KO:K14398 CTD:79869 HOVERGEN:HBG056699
OrthoDB:EOG44BB2Q EMBL:BC083864 IPI:IPI00361243
RefSeq:NP_001014267.1 UniGene:Rn.98627 ProteinModelPortal:Q5XI29
STRING:Q5XI29 PRIDE:Q5XI29 GeneID:365407 KEGG:rno:365407
UCSC:RGD:1305441 InParanoid:Q5XI29 NextBio:687392
ArrayExpress:Q5XI29 Genevestigator:Q5XI29
GermOnline:ENSRNOG00000020668 Uniprot:Q5XI29
Length = 462
Score = 222 (83.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 62/174 (35%), Positives = 85/174 (48%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPAXXXXXXXXX 60
+DLYDD + + S STE V +P P+ ++PA
Sbjct: 28 IDLYDDVLTAASQPSDDRSS----STEPPP-----PVRQEPAPKPNNKTPAILYTYSGLR 78
Query: 61 XXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVT 120
+YVG+ +WWTT+ + IRSIGV D +++KF EN +NGQSKG+ V
Sbjct: 79 SRRAA-------VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVV 131
Query: 121 LGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----PLRSRSRRS 170
+ SE S+ ++E LP L+G K V TR L QFEAQ P R+ SR S
Sbjct: 132 VASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIPPRAHSRDS 185
>UNIPROTKB|Q5XI29 [details] [associations]
symbol:Cpsf7 "Cleavage and polyadenylation specificity
factor subunit 7" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0051262 "protein
tetramerization" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305441 GO:GO:0051262 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005849 eggNOG:NOG313287
HOGENOM:HOG000111137 KO:K14398 CTD:79869 HOVERGEN:HBG056699
OrthoDB:EOG44BB2Q EMBL:BC083864 IPI:IPI00361243
RefSeq:NP_001014267.1 UniGene:Rn.98627 ProteinModelPortal:Q5XI29
STRING:Q5XI29 PRIDE:Q5XI29 GeneID:365407 KEGG:rno:365407
UCSC:RGD:1305441 InParanoid:Q5XI29 NextBio:687392
ArrayExpress:Q5XI29 Genevestigator:Q5XI29
GermOnline:ENSRNOG00000020668 Uniprot:Q5XI29
Length = 462
Score = 222 (83.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 62/174 (35%), Positives = 85/174 (48%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPAXXXXXXXXX 60
+DLYDD + + S STE V +P P+ ++PA
Sbjct: 28 IDLYDDVLTAASQPSDDRSS----STEPPP-----PVRQEPAPKPNNKTPAILYTYSGLR 78
Query: 61 XXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVT 120
+YVG+ +WWTT+ + IRSIGV D +++KF EN +NGQSKG+ V
Sbjct: 79 SRRAA-------VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVV 131
Query: 121 LGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQN----PLRSRSRRS 170
+ SE S+ ++E LP L+G K V TR L QFEAQ P R+ SR S
Sbjct: 132 VASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQARKRIPPRAHSRDS 185
>UNIPROTKB|E2RHC1 [details] [associations]
symbol:CPSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051262 "protein tetramerization"
evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0051262 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005849 KO:K14398 GeneTree:ENSGT00690000101901 CTD:79869
EMBL:AAEX03011677 NextBio:20851797 RefSeq:XP_003432395.1
RefSeq:XP_003432396.1 Ensembl:ENSCAFT00000038324 GeneID:476066
KEGG:cfa:476066 Uniprot:E2RHC1
Length = 471
Score = 221 (82.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 62/174 (35%), Positives = 81/174 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKSPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQ 160
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQ 171
>UNIPROTKB|Q8N684 [details] [associations]
symbol:CPSF7 "Cleavage and polyadenylation specificity
factor subunit 7" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0051262 "protein
tetramerization" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0051262 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 GO:GO:0005849 PDB:3N9U PDBsum:3N9U
eggNOG:NOG313287 HOGENOM:HOG000111137 KO:K14398 EMBL:AJ275970
EMBL:AK022591 EMBL:AK096343 EMBL:AL512759 EMBL:BX537888
EMBL:AP003108 EMBL:BC018135 IPI:IPI00550821 IPI:IPI00719106
IPI:IPI00915356 RefSeq:NP_001129512.1 RefSeq:NP_001136037.1
RefSeq:NP_079087.3 UniGene:Hs.718984 ProteinModelPortal:Q8N684
SMR:Q8N684 IntAct:Q8N684 MINT:MINT-1469392 STRING:Q8N684
PhosphoSite:Q8N684 DMDM:74759932 PaxDb:Q8N684 PRIDE:Q8N684
DNASU:79869 Ensembl:ENST00000340437 Ensembl:ENST00000394888
Ensembl:ENST00000439958 Ensembl:ENST00000448745 GeneID:79869
KEGG:hsa:79869 UCSC:uc001nrp.3 UCSC:uc001nrq.3 UCSC:uc001nrr.3
CTD:79869 GeneCards:GC11M061170 HGNC:HGNC:30098 HPA:HPA041094
neXtProt:NX_Q8N684 PharmGKB:PA165543380 HOVERGEN:HBG056699
InParanoid:Q8N684 OMA:RSVGVYD OrthoDB:EOG44BB2Q PhylomeDB:Q8N684
ChiTaRS:CPSF7 EvolutionaryTrace:Q8N684 GenomeRNAi:79869
NextBio:69628 PMAP-CutDB:Q8N684 ArrayExpress:Q8N684 Bgee:Q8N684
Genevestigator:Q8N684 GermOnline:ENSG00000149532 Uniprot:Q8N684
Length = 471
Score = 221 (82.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 62/174 (35%), Positives = 81/174 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQ 160
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQ 171
>UNIPROTKB|E2R0Y4 [details] [associations]
symbol:CPSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051262 "protein tetramerization"
evidence=IEA] [GO:0005849 "mRNA cleavage factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0051262 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005849 GeneTree:ENSGT00690000101901 OMA:RSVGVYD
EMBL:AAEX03011677 Ensembl:ENSCAFT00000025637 NextBio:20851797
Uniprot:E2R0Y4
Length = 500
Score = 221 (82.9 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 62/174 (35%), Positives = 81/174 (46%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 37 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 86
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 87 EPSPKPNNKSPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 146
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQ 160
N +NGQSKG+ V + SE S+ ++E LP L+G K V TR L QFEAQ
Sbjct: 147 NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQ 200
>MGI|MGI:1917826 [details] [associations]
symbol:Cpsf7 "cleavage and polyadenylation specific factor
7" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0051262 "protein
tetramerization" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1917826 GO:GO:0051262 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005849 eggNOG:NOG313287
HOGENOM:HOG000111137 KO:K14398 GeneTree:ENSGT00690000101901
CTD:79869 HOVERGEN:HBG056699 OMA:RSVGVYD OrthoDB:EOG44BB2Q
EMBL:AK053375 EMBL:AK165330 EMBL:AK088603 EMBL:BC038812
IPI:IPI00225249 IPI:IPI00720126 IPI:IPI00720208
RefSeq:NP_001157744.1 RefSeq:NP_758506.3 UniGene:Mm.490260
ProteinModelPortal:Q8BTV2 SMR:Q8BTV2 STRING:Q8BTV2
PhosphoSite:Q8BTV2 PaxDb:Q8BTV2 PRIDE:Q8BTV2
Ensembl:ENSMUST00000038379 GeneID:269061 KEGG:mmu:269061
UCSC:uc008gpw.2 UCSC:uc008gpz.2 UCSC:uc008gqa.2 InParanoid:Q8BTV2
NextBio:392668 PMAP-CutDB:Q8BTV2 Bgee:Q8BTV2
CleanEx:MM_5730453I16RIK Genevestigator:Q8BTV2
GermOnline:ENSMUSG00000034820 Uniprot:Q8BTV2
Length = 471
Score = 218 (81.8 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 57/160 (35%), Positives = 79/160 (49%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPAXXXXXXXXX 60
+DLYDD + + S STE V +P P+ ++PA
Sbjct: 28 IDLYDDVLTAASQPSDDRSS----STEPPP-----PVRQEPAPKPNNKTPAILYTYSGLR 78
Query: 61 XXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVT 120
+YVG+ +WWTT+ + IRSIGV D +++KF EN +NGQSKG+ V
Sbjct: 79 SRRAA-------VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVV 131
Query: 121 LGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQ 160
+ SE S+ ++E LP L+G K V TR L QFEAQ
Sbjct: 132 VASENSVHKLLELLPGKVLNGEKVDVRPATRQNLSQFEAQ 171
>WB|WBGene00008362 [details] [associations]
symbol:cfim-2 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040017 "positive regulation of
locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 SMART:SM00360 GO:GO:0009792
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0040017 GO:GO:0003676 GO:GO:0042127 GO:GO:0007281
GO:GO:0040020 eggNOG:NOG313287 GeneTree:ENSGT00690000101901
EMBL:Z68160 RefSeq:NP_001255353.1 ProteinModelPortal:C1P629
SMR:C1P629 STRING:C1P629 PaxDb:C1P629 EnsemblMetazoa:D1046.1b.1
EnsemblMetazoa:D1046.1b.2 EnsemblMetazoa:D1046.1b.3
EnsemblMetazoa:D1046.1b.4 GeneID:177710 KEGG:cel:CELE_D1046.1
CTD:177710 WormBase:D1046.1b HOGENOM:HOG000022106
ArrayExpress:C1P629 Uniprot:C1P629
Length = 491
Score = 209 (78.6 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 57/167 (34%), Positives = 80/167 (47%)
Query: 12 GPTDTNTS-PGEHVSTEHDDID-LYDDVTLQPFPEHTGR--SPAXXXXXXXXXXXXXXXX 67
GP D N G + +DID LYD+ + + SP
Sbjct: 19 GPIDENALLDGSRKELKEEDIDDLYDEAIAPTNSTESAKPVSPTITTVTAPTAGIGAKPA 78
Query: 68 XXX-----CNLYVGNLTWWTTEADMSDAIRSIGVP--DFIDVKFFENASNGQSKGFCTVT 120
C YVGNL W+TT+AD+ A++S G+ F D+KFFEN +NGQSKG+ +
Sbjct: 79 TSSEGRKYC-CYVGNLLWYTTDADLLKALQSTGLARSQFADMKFFENRTNGQSKGYALLV 137
Query: 121 LGSEESMSLVMERLPTLELHGRKPMV-AYPTRNV--LYQFEAQNPLR 164
L S+ ++ ME LPT +HG+ P V +Y N L +A+N R
Sbjct: 138 LNSDAAVKQTMEILPTKTIHGQSPTVLSYNKTNQAKLEDAQAKNQTR 184
>UNIPROTKB|C9J323 [details] [associations]
symbol:CPSF7 "Cleavage and polyadenylation-specificity
factor subunit 7" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP003108 HGNC:HGNC:30098 ChiTaRS:CPSF7 IPI:IPI00927882
ProteinModelPortal:C9J323 SMR:C9J323 STRING:C9J323
Ensembl:ENST00000450000 ArrayExpress:C9J323 Bgee:C9J323
Uniprot:C9J323
Length = 146
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 50/149 (33%), Positives = 68/149 (45%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVMERLP 135
N +NGQSKG+ V + SE S+ ++E LP
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLELLP 146
>UNIPROTKB|C9J286 [details] [associations]
symbol:CPSF7 "Cleavage and polyadenylation-specificity
factor subunit 7" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP003108 HGNC:HGNC:30098 ChiTaRS:CPSF7 IPI:IPI00926271
ProteinModelPortal:C9J286 SMR:C9J286 STRING:C9J286
Ensembl:ENST00000449811 ArrayExpress:C9J286 Bgee:C9J286
Uniprot:C9J286
Length = 144
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 48/146 (32%), Positives = 66/146 (45%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESMSLVME 132
N +NGQSKG+ V + SE S+ ++E
Sbjct: 118 NRANGQSKGYAEVVVASENSVHKLLE 143
>UNIPROTKB|C9JM38 [details] [associations]
symbol:CPSF7 "Cleavage and polyadenylation-specificity
factor subunit 7" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR012677 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AP003108 HGNC:HGNC:30098 ChiTaRS:CPSF7
IPI:IPI00926462 ProteinModelPortal:C9JM38 SMR:C9JM38 STRING:C9JM38
Ensembl:ENST00000413184 ArrayExpress:C9JM38 Bgee:C9JM38
Uniprot:C9JM38
Length = 138
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 47/141 (33%), Positives = 63/141 (44%)
Query: 1 MDLYDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDV---TLQPFPEHTGR--------- 48
+D+Y D P NT D IDLYDDV T QP + +
Sbjct: 8 IDIYADEEFNQDPEFNNT----------DQIDLYDDVLTATSQPSDDRSSSTEPPPPVRQ 57
Query: 49 --SPAXXXXXXXXXXXXXXXXXXXCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFE 106
SP +YVG+ +WWTT+ + IRSIGV D +++KF E
Sbjct: 58 EPSPKPNNKTPAILYTYSGLRNRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE 117
Query: 107 NASNGQSKGFCTVTLGSEESM 127
N +NGQSKG+ V + SE S+
Sbjct: 118 NRANGQSKGYAEVVVASENSV 138
>TAIR|locus:2162107 [details] [associations]
symbol:AT5G55670 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB009050 HSSP:Q9V535 KO:K14398 OMA:GKGSAPN IPI:IPI00548235
RefSeq:NP_200378.1 UniGene:At.6556 ProteinModelPortal:Q9FM71
SMR:Q9FM71 PRIDE:Q9FM71 EnsemblPlants:AT5G55670.1 GeneID:835661
KEGG:ath:AT5G55670 TAIR:At5g55670 HOGENOM:HOG000242877
InParanoid:Q9FM71 PhylomeDB:Q9FM71 ProtClustDB:CLSN2686996
ArrayExpress:Q9FM71 Genevestigator:Q9FM71 Uniprot:Q9FM71
Length = 710
Score = 125 (49.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L+VG+L WWTT+A++ + G +VKFF+ ++G+SKG+C V + S +
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVK--EVKFFDEKASGKSKGYCQVEFYDPVAASACKD 293
Query: 133 RLPTLELHGRKPMVAYPTR-NVLYQFEAQ 160
L +GR +V Y + +V EAQ
Sbjct: 294 ALNGYPFNGRPCVVEYASPYSVKRMGEAQ 322
Score = 35 (17.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 2 DLYDDAILGMGPTDT---NTSPGEHVSTEHDDIDLYDDVTLQP 41
DLY+D +G G + N G + E + +++ ++ ++P
Sbjct: 38 DLYNDVNVGEGFLQSMKKNDEAGSR-NEEKEKVNMEEEDRVEP 79
>TAIR|locus:2031830 [details] [associations]
symbol:AT1G13190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007357 HSSP:Q9V535
eggNOG:NOG313287 KO:K14398 HOGENOM:HOG000242877 EMBL:AY062527
EMBL:BT002575 IPI:IPI00529165 PIR:C86266 RefSeq:NP_172778.1
UniGene:At.27310 UniGene:At.48183 ProteinModelPortal:Q9SAF2
SMR:Q9SAF2 PaxDb:Q9SAF2 PRIDE:Q9SAF2 EnsemblPlants:AT1G13190.1
GeneID:837877 KEGG:ath:AT1G13190 TAIR:At1g13190 InParanoid:Q9SAF2
OMA:HPQGMMG PhylomeDB:Q9SAF2 ProtClustDB:CLSN2682506
ArrayExpress:Q9SAF2 Genevestigator:Q9SAF2 Uniprot:Q9SAF2
Length = 573
Score = 123 (48.4 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L+VG L WWTT+A++ + G ++KFF+ +G+SKG+C V + + E
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVK--EIKFFDERVSGKSKGYCQVEFYDSAAAAACKE 261
Query: 133 RLPTLELHGRKPMVAYPTRNVLYQFEA 159
+ +G+ +VA+ + L Q A
Sbjct: 262 GMNGFIFNGKACVVAFASPETLKQMGA 288
>ASPGD|ASPL0000071321 [details] [associations]
symbol:AN4799 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001303
EnsemblFungi:CADANIAT00005622 HOGENOM:HOG000194458 OMA:FDIDIYG
Uniprot:C8VAL8
Length = 391
Score = 115 (45.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 35/104 (33%), Positives = 49/104 (47%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFI-DVKFFENASNGQSKG--FCTVT-LGSEESMS 128
L + L WWTT+ D+ R G D + DV F E+ NG+SKG F T L + +
Sbjct: 111 LLISELHWWTTDDDIRGWTREAGCEDELKDVTFSEHKVNGKSKGQAFLEFTSLPAATATK 170
Query: 129 LVMERLPTLELHGRKPMVAY--PTRNVLYQFEAQNPLRSRSRRS 170
++ L T GRK +V Y P N NP+R + R+
Sbjct: 171 HHIDSLSTTGQSGRKFLVNYTSPIPNPFRTLPKDNPMRKDNART 214
>UNIPROTKB|G5EI55 [details] [associations]
symbol:MGCH7_ch7g489 "RRM domain-containing protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:CM000230 EMBL:CM001237 RefSeq:XP_003721015.1
ProteinModelPortal:G5EI55 EnsemblFungi:MGG_02741T0 GeneID:2682723
KEGG:mgr:MGG_02741 Uniprot:G5EI55
Length = 424
Score = 113 (44.8 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFI-DVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
+ + L WW T+ D+ IR G + + D+ F E+ NG+SKG + L S+++ + V
Sbjct: 99 ILISELQWWITDDDIRGWIREAGCEEELKDITFSEHKVNGKSKGQVYIELTSQQAATAVK 158
Query: 132 ERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRS 165
RL + G A + V+Y NP R+
Sbjct: 159 HRLESSGEDGASQ--AGRKQQVIYSSPTMNPFRT 190
>DICTYBASE|DDB_G0282873 [details] [associations]
symbol:DDB_G0282873 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0282873 GO:GO:0000166
EMBL:AAFI02000047 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG313287
RefSeq:XP_639372.1 ProteinModelPortal:Q54RW5
EnsemblProtists:DDB0233751 GeneID:8623811 KEGG:ddi:DDB_G0282873
InParanoid:Q54RW5 OMA:RDRDDHD Uniprot:Q54RW5
Length = 952
Score = 117 (46.2 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LY+ L WWTT+ + + G + +K FEN +NG+SKG+ V E L
Sbjct: 165 LYISGLEWWTTDQQLENVFLEFG--KIVTLKIFENENNGKSKGYAFVEFEHIEQAQLAKS 222
Query: 133 RLPTLELHGRK 143
+ E++G++
Sbjct: 223 KTEKKEINGKE 233
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 106 (42.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L++G L+W T +A + DA G D +D K + G+S+GF V E + + +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFG--DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 133 RLPTLELHGR 142
+ EL+GR
Sbjct: 95 EMDGKELNGR 104
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 106 (42.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T + + +A G D ID K + G+S+GF VT S+E+M +E
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYG--DVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 134 LPTLELHGR 142
+ +L GR
Sbjct: 67 MNGQDLDGR 75
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 105 (42.0 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 74 YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMER 133
+VG L W T + D+ G D ID K + +G+S+GF VT E++M +E
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFG--DVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 134 LPTLELHGR 142
+ EL GR
Sbjct: 67 MNGKELDGR 75
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 107 (42.7 bits), Expect = 0.00010, P = 0.00010
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
++VG +++ T E + +A G + +D K + G+S+GF VT S E S M+
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYG--EVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 133 RLPTLELHGRKPMVAYPT 150
L +LHGR+ V Y T
Sbjct: 94 -LDGQDLHGRRIRVNYAT 110
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 106 (42.4 bits), Expect = 0.00013, P = 0.00013
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LY GNL + A ++ I+ P+ ++V + N GQS+GF VT+ + E +++++
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLY--NRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 133 RLPTLELHGRKPMVAY-----PTRNVLYQFEAQNPL 163
L E GR V + P + LY E ++ L
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPNKEPLYP-ETEHKL 179
Score = 105 (42.0 bits), Expect = 0.00019, P = 0.00019
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L+VGNL+W T ++ A R G D + + + G+S+G+ V S+ M +E
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECG--DVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALE 236
Query: 133 RLPTLELHGR 142
L EL GR
Sbjct: 237 SLDGFELEGR 246
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 95 (38.5 bits), Expect = 0.00032, P = 0.00032
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L+VG L+W T ++ + A S G + + + G+S+GF V+ E+S + ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFG--EVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 133 RLPTLELHGRKPMVAYPT 150
+ EL+GR+ V T
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 87 (35.7 bits), Expect = 0.00047, P = 0.00047
Identities = 23/74 (31%), Positives = 36/74 (48%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LYVGNL + +AD+ + G V + + G+S+GF V +GS++ +
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVM--DRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 133 RLPTLELHGRKPMV 146
L E+ GR MV
Sbjct: 63 GLNGKEMDGRNLMV 76
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 87 (35.7 bits), Expect = 0.00047, P = 0.00047
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
+YVG+L++ T ++ G + + K + G+SKGF +T G++++ +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYG--EIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 133 RLPTLELHGRKPMVAYPTRN 152
+ ++L GRK V N
Sbjct: 78 KANGIDLQGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 87 (35.7 bits), Expect = 0.00047, P = 0.00047
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
+YVG+L++ T ++ G + + K + G+SKGF +T G++++ +
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYG--EIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 133 RLPTLELHGRKPMVAYPTRN 152
+ ++L GRK V N
Sbjct: 78 KANGIDLQGRKIRVNIAREN 97
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 85 (35.0 bits), Expect = 0.00081, P = 0.00080
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
++YVGN + TTE ++ + SIG +V+ + G+ +GF + E S +
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIG--QINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
Query: 132 ERLPTLELHGR 142
E++ E +GR
Sbjct: 64 EQMNGAEFNGR 74
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 172 153 0.00081 105 3 11 22 0.37 32
30 0.41 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 48
No. of states in DFA: 585 (62 KB)
Total size of DFA: 147 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.14u 0.09s 13.23t Elapsed: 00:00:04
Total cpu time: 13.15u 0.09s 13.24t Elapsed: 00:00:05
Start: Thu Aug 15 14:58:06 2013 End: Thu Aug 15 14:58:11 2013