RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8001
(172 letters)
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 52.0 bits (124), Expect = 4e-10
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
C L++G + ++ + I + + + A +++GF V S + ++
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 131 MERL--PTLELHGRKPMVAY 148
+L ++L G + V +
Sbjct: 62 RRKLMPGRIQLWGHQIAVDW 81
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 50.7 bits (121), Expect = 8e-10
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
+LYVG+L TEA + + G + ++ + +S G+ V +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAG--PILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 59
Query: 132 ERLPTLELHGRKPMVAYPTRN 152
+ + + G+ + + R+
Sbjct: 60 DTMNFDVIKGKPVRIMWSQRD 80
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 49.6 bits (118), Expect = 2e-09
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
C +++G L+W TT+ + + G + + + +S+GF VT + + V
Sbjct: 1 CKMFIGGLSWQTTQEGLREYFGQFG--EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 58
Query: 131 MERLPTLELHGRK--PMVAY 148
+ + EL + P VA+
Sbjct: 59 LAQSRH-ELDSKTIDPKVAF 77
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 47.2 bits (112), Expect = 3e-08
Identities = 13/91 (14%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
+ + V N+ + + ++ + + G + + + G +GF V +++
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT-GAHRGFGFVDFITKQD 63
Query: 127 MSLVMERLP-TLELHGRKPMVAYPTRNVLYQ 156
L + L+GR+ ++ + V Q
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 46.6 bits (110), Expect = 3e-08
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEE 125
S NLYV L T+ ++ G I + + G S+G +
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQVTGVSRGVGFIRFDKRI 59
Query: 126 SMSLVMERLPTLELHGRK 143
++ L + G
Sbjct: 60 EAEEAIKGLNGQKPSGAT 77
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 47.3 bits (112), Expect = 4e-08
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LY+ NL + T +M D G ++ + +++G V +
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYG-----PIRQIRVGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 133 RLPTLELHGRKPMVAY 148
L + R +V Y
Sbjct: 65 HLSGFNVCNRYLVVLY 80
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 46.2 bits (109), Expect = 4e-08
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIG-VPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
L++ NL + TTE + +G + K A S GF V E +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 132 ERLPTLELHGRKPMVAY 148
++L + G K V
Sbjct: 61 KQLQGHTVDGHKLEVRI 77
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 45.8 bits (108), Expect = 6e-08
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
S+ NL V L T+ ++ R+IG + + G S G+ V SE
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIG--PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQ 58
Query: 129 LVMERLPTLELHGRKPMVAY 148
++ L + + ++ V+Y
Sbjct: 59 RAIKVLNGITVRNKRLKVSY 78
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.7 bits (105), Expect = 3e-07
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
SQ NL++ +L + D+ + + K F + SK F V+
Sbjct: 11 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQTNLSKCFGFVSYD 68
Query: 123 SEESMSLVMERLPTLELHGRKPMVAY 148
+ S ++ + ++ ++ V
Sbjct: 69 NPVSAQAAIQSMNGFQIGMKRLKVQL 94
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 43.8 bits (103), Expect = 3e-07
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEE 125
T + L+VGNL TE +M G + + + F + L +
Sbjct: 4 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG--------FGFIRLETRT 55
Query: 126 SMSLVMERLPTLELHGRKPMVAYPTRN 152
+ L + L G++ V + +
Sbjct: 56 LAEIAKVELDNMPLRGKQLRVRFACHS 82
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 43.9 bits (103), Expect = 4e-07
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESM 127
++ C +YVGNL D+ D G ++ + + F V
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYG-----AIRDIDLKNRRGGPPFAFVEFEDPRDA 66
Query: 128 SLVMERLPTLELHGRKPMVAY 148
+ + G + V +
Sbjct: 67 EDAVYGRDGYDYDGYRLRVEF 87
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 43.9 bits (103), Expect = 4e-07
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L++G L + + + + + S ++++ G SKG+ +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 133 RLPTLELHGRKPMVAY 148
L ++L +K +V
Sbjct: 62 GLNGMQLGDKKLLVQR 77
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 43.8 bits (103), Expect = 4e-07
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
C LYVGNL+++TTE + + G D + + + GFC V S
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSG--DIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 65
Query: 131 MERLPTLELHGRKPMVAY 148
M + L R +
Sbjct: 66 MRYINGTRLDDRIIRTDW 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 43.5 bits (102), Expect = 4e-07
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
++A +C L V L+ +TTE D+ + G DV + + +S+GF V
Sbjct: 2 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYG--PIADVSIVYDQQSRRSRGFAFVYFE 59
Query: 123 SEESMSLVMERLPTLELHGRK 143
+ + ER +EL GR+
Sbjct: 60 NVDDAKEAKERANGMELDGRR 80
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.8 bits (103), Expect = 4e-07
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
+L V L W TTE D+ + + + + V+ ++ G SKGF V E+ VM
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 67
Query: 132 ERLPTLELHGRKPMVAYPTR 151
+ + GR P
Sbjct: 68 SQRH--MIDGRWCDCKLPNS 85
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 43.9 bits (103), Expect = 5e-07
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
SS L+V NL++ ++E D+ + G ++ + ++ + KGF VT E
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYG--PLSELHYPIDSLTKKPKGFAFVTFMFPEH 62
Query: 127 MSLVMERLPTLELHGRKPMVAYPTR 151
+ GR V T
Sbjct: 63 AVKAYAEVDGQVFQGRMLHVLPSTI 87
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 43.5 bits (102), Expect = 5e-07
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
+ +YVG L +E + + G ++ ++ GQ +G+ V SEE
Sbjct: 6 RNQDATVYVGGLDEKVSEPLLWELFLQAG--PVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 127 MSLVMERLPTLELHGRKPMVAYPTRN 152
++ + ++L+G+ V + +
Sbjct: 64 ADYAIKIMDMIKLYGKPIRVNKASAH 89
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 43.4 bits (102), Expect = 6e-07
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 54 RHHRYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQS 113
+ R+ +Q +S +C +Y G + T+ M G I V +
Sbjct: 3 KQLRFEDVVNQ-SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------ 55
Query: 114 KGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148
+ V + ES + + + + G +
Sbjct: 56 --YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 88
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 43.5 bits (102), Expect = 6e-07
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESM 127
S N+++ NL + D + G V EN SKG+ V ++E+
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN----GSKGYGFVHFETQEAA 61
Query: 128 SLVMERLPTLELHGRKPMVAY 148
+E++ + L+ RK V
Sbjct: 62 ERAIEKMNGMLLNDRKVFVGR 82
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 42.3 bits (99), Expect = 1e-06
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
+++ LYVG L + + A G D D++ + + +GF V E
Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAED 59
Query: 127 MSLVMERLPTLELHGRKPMVAY 148
+ ++ + EL GR V
Sbjct: 60 AAAAIDNMNESELFGRTIRVNL 81
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 42.2 bits (99), Expect = 2e-06
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
S NLYV NL T+ + G + + G+ +G V E
Sbjct: 3 SIKDTNLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRDKLTGRPRGVAFVRYNKREE 60
Query: 127 MSLVMERLPTLELHGRK 143
+ L + G
Sbjct: 61 AQEAISALNNVIPEGGS 77
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 41.9 bits (98), Expect = 2e-06
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
++VG L+ T E + + G + ++ + + +GFC +T EE + +ME
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFG--EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59
Query: 133 RLPTLELHGRK 143
+ + K
Sbjct: 60 KKYH-NVGLSK 69
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 41.8 bits (98), Expect = 2e-06
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L V NL + ++AD+ + G V + + + V + M+
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG---TADVHFERKADALKAMK 59
Query: 133 RLPTLELHGRKPMVAYPT 150
+ + L GR + T
Sbjct: 60 QYNGVPLDGRPMNIQLVT 77
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 41.6 bits (97), Expect = 2e-06
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L++G L++ TT+ + D + + +S+GF VT + E + M
Sbjct: 9 LFIGGLSFETTDESLRSHFEQW--GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 133 RLPTLELHGRK 143
P ++ GR
Sbjct: 67 ARPH-KVDGRV 76
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 41.3 bits (96), Expect = 2e-06
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
C L++ N T+ ++ D ++ I + S+ F + + S+E
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDIN--VVALSIRLPSLRFNTSRRFAYIDVTSKEDARYC 59
Query: 131 MERLPTLELHGRKPMVAY 148
+E+L L++ G +
Sbjct: 60 VEKLNGLKIEGYTLVTKV 77
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 41.6 bits (97), Expect = 2e-06
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 2/81 (2%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
+ + + V N+ + + ++ D + G G V
Sbjct: 2 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGY--QVIPGSVCLKYNEKGMPTGEAMVAFE 59
Query: 123 SEESMSLVMERLPTLELHGRK 143
S + + + L + RK
Sbjct: 60 SRDEATAAVIDLNDRPIGSRK 80
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 41.5 bits (96), Expect = 4e-06
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 59 SHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCT 118
SH + S++ NL++GNL + A++ AI + + + G ++ F
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFA---KNDLAVVDVRTGTNRKFGY 58
Query: 119 VTLGSEESMSLVMERLPTLELHGRKPMVAY 148
V S E + + L L++ G + +
Sbjct: 59 VDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 41.3 bits (96), Expect = 4e-06
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIG------VPDFIDVKFFENASNGQSKGFCTVT 120
S + +YV L T D++D + G + + + G+ KG TV+
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 121 LGSEESMSLVMERLPTLELHGRKPMVAYPTRN 152
+ +E + G K V+ +
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 40.9 bits (95), Expect = 4e-06
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
+S L+VG L++ T E + +V ++ +S+GF VT + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKY--GQISEVVVVKDRETQRSRGFGFVTFENIDD 59
Query: 127 MSLVMERLPTLELHGRKPMVAY 148
M + + GR+ V
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQ 81
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 41.2 bits (96), Expect = 4e-06
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
+ L++G L++ TTE + + G + ++ +S+GF VT
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDC--VVMRDPASKRSRGFGFVTFS 70
Query: 123 SEESMSLVMERLPTLELHGRK 143
S + M P + GR
Sbjct: 71 SMAEVDAAMAARPH-SIDGRV 90
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 40.9 bits (95), Expect = 5e-06
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 4/80 (5%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDV---KFFENASNGQSKGFCTVTLGSEESMSL 129
LYVGN+ + TE M D + + Q K F + S + +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 130 VMERLPTLELHGRKPMVAYP 149
M + G+ + P
Sbjct: 64 AM-AFDGIIFQGQSLKIRRP 82
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 40.5 bits (94), Expect = 6e-06
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
S NL V L T+ + SIG + K + GQS G+ V +
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIG--EIESCKLVRDKITGQSLGYGFVNYIDPKDAE 58
Query: 129 LVMERLPTLELHGRKPMVAY 148
+ L L L + V+Y
Sbjct: 59 KAINTLNGLRLQTKTIKVSY 78
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 40.2 bits (93), Expect = 1e-05
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
+S+ ++ N+ + T+ D+ + I V + +NGQ G V +E+
Sbjct: 5 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDEN--AVHVLVDNNGQGLGQALVQFKNEDD 62
Query: 127 MSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
L +L+GR+ V T + + E P + +S
Sbjct: 63 ARKSER-LHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKS 102
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 40.1 bits (93), Expect = 1e-05
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
S L+V ++ E ++ + G I + G SKG+ V + +
Sbjct: 4 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR--TGFSKGYALVEYETHKQ 61
Query: 127 MSLVMERLPTLELHGRKPMVAY 148
E L E+ G+ V +
Sbjct: 62 ALAAKEALNGAEIMGQTIQVDW 83
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.6 bits (92), Expect = 1e-05
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
+++G L+W TT+ D+ D + +D + G+S+GF V ES+ VM+
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKF--GEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD 59
Query: 133 RLPTLELHGRK 143
+ +L+G+
Sbjct: 60 QKEH-KLNGKV 69
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 39.6 bits (92), Expect = 1e-05
Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
+Y+ NL + ++ ++ +I F + + + + +G V S +
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 131 MERLPTLELHGRKPMVAY 148
+ + + + + Y
Sbjct: 63 LRSMQGFPFYDKPMRIQY 80
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 39.3 bits (91), Expect = 1e-05
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
+++GNL E + D + GV K + G SKG+ + S ++ +E
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTP-KIMRDPDTGNSKGYAFINFASFDASDAAIE 59
Query: 133 RLPTLELHGRKPMVAYPTR 151
+ L R V+Y +
Sbjct: 60 AMNGQYLCNRPITVSYAFK 78
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 38.9 bits (90), Expect = 2e-05
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LY+GNL+ T D+ +P V G+ V + +E
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQV--------LLKSGYAFVDYPDQNWAIRAIE 55
Query: 133 RL-PTLELHGRKPMVAY 148
L +ELHG+ V Y
Sbjct: 56 TLSGKVELHGKIMEVDY 72
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 39.3 bits (91), Expect = 2e-05
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 62 HSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTL 121
H ++ ++VG L + TT+A + G + V G+S+G+ VT+
Sbjct: 2 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ--TGKSRGYGFVTM 59
Query: 122 GSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRSRRS 170
+ + + GRK V A + RS ++
Sbjct: 60 ADRAAAERACKDPNP-IIDGRKANVNL----------AYLGAKPRSLQT 97
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 40.4 bits (93), Expect = 3e-05
Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 4/141 (2%)
Query: 8 ILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTGRSPARYRHHRYSHHHSQATS 67
+ M +T S G T ++ + +P + R A
Sbjct: 36 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL 95
Query: 68 SSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESM 127
+ ++VG + T E + D G ++ + +G+ +GF VT +S+
Sbjct: 96 T-VKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 152
Query: 128 SLVMERLPTLELHGRKPMVAY 148
++ ++G V
Sbjct: 153 DKIVI-QKYHTVNGHNCEVRK 172
Score = 38.1 bits (87), Expect = 2e-04
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
L++G L++ TT+ + G D + + +S+GF VT + E + M
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWG--TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 133 RLPTLELHGRKPMVAYPTRNVLYQFEAQNPLR 164
P +R + A ++
Sbjct: 67 ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 98
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.5 bits (89), Expect = 3e-05
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
SS ++VG T TE ++ + G D +DV + + F VT ++
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYG--DVMDVFIPK-----PFRAFAFVTFADDQI 54
Query: 127 MSLVMERLPTLELHGRKPMVAY 148
+ L + G ++
Sbjct: 55 AQSLCGED--LIIKGISVHISN 74
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.2 bits (88), Expect = 5e-05
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
SS + V NL + ++ D ++ + ++K VTL + E
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYD---------LKYCYVDRNKRTAFVTLLNGEQ 52
Query: 127 MSLVMERLPTLELHGRKPMVAY 148
++ G+ +V
Sbjct: 53 AQNAIQMFHQYSFRGKDLIVQL 74
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 37.8 bits (87), Expect = 5e-05
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
++VG L+ TT D+ G D + F + + +GF VT SE+ + V E
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT--TNRHRGFGFVTFESEDIVEKVCE 59
Query: 133 RLPTLELHGRK 143
+ E++ +
Sbjct: 60 -IHFHEINNKM 69
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 38.1 bits (88), Expect = 6e-05
Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 48 RSPARYRHHRYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFEN 107
+SP R S A + ++ L D+ D ++ DV+ +
Sbjct: 1 KSPVREPVDNLSPEERDART-----VFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISD 53
Query: 108 ASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMV--AYPTRN 152
++ +SKG V +S+ L + L L G +V + +N
Sbjct: 54 RNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQAEKN 99
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 37.7 bits (87), Expect = 6e-05
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
+ + S+ L+V N+ + + D +R + + + SKGF VT
Sbjct: 4 NSESKSTPKRLHVSNIPFRFRDPD----LRQMFGQFGKILDVEIIFNERGSKGFGFVTFE 59
Query: 123 SEESMSLVMERLPTLELHGRKPMVAY 148
+ E+L + GRK V
Sbjct: 60 NSADADRAREKLHGTVVEGRKIEVNN 85
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 37.7 bits (87), Expect = 7e-05
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEE 125
T SS LYV NL T+E + F ++K + + + V + E
Sbjct: 4 TMSSVKILYVRNLMLSTSEEMIEKE--------FNNIKPGAVERVKKIRDYAFVHFSNRE 55
Query: 126 SMSLVMERLPTLELHGRKPMVAY 148
M+ L L G V
Sbjct: 56 DAVEAMKALNGKVLDGSPIEVTL 78
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 37.8 bits (87), Expect = 8e-05
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
LY+ NL+ TE D+ + G+ +G +T ++E
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARF--QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQA 76
Query: 131 MERLPTLELHGRKPMVAY 148
+ + +L+G+ ++ +
Sbjct: 77 LHLVNGYKLYGKILVIEF 94
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 37.7 bits (87), Expect = 8e-05
Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
L NL++ TE ++ + + +G+SKG + SE +
Sbjct: 18 TLLAKNLSFNITEDELKEVFEDALEIRLVSQ-------DGKSKGIAYIEFKSEADAEKNL 70
Query: 132 ERLPTLELHGRKPMVAYPTR 151
E E+ GR + Y
Sbjct: 71 EEKQGAEIDGRSVSLYYTGE 90
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 37.5 bits (87), Expect = 9e-05
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 21/105 (20%)
Query: 67 SSSHCNLYVGNLTWW-TTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEE 125
S + +++GNL ++D+ G V GF V +E
Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK----------GFAFVQYVNER 61
Query: 126 SMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRSRRS 170
+ + + G+ + A P +RS S
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINL----------AAEPKVNRSGPS 96
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.8 bits (87), Expect = 9e-05
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
+++VGN+ + TE + D + + + + G+ KG+ +E+ M
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 67
Query: 132 ERLPTLELHGRKPMVAY 148
L E GR V
Sbjct: 68 RNLNGREFSGRALRVDN 84
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 37.4 bits (86), Expect = 9e-05
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 66 TSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEE 125
T S + V L + D+ D +R G + DV+ V +E
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---------MGMVEYLRKE 61
Query: 126 SMSLVMERLPTLELHGRKPMVAY 148
M + +L + + +Y
Sbjct: 62 DMEYALRKLDDTKFRSHEGETSY 84
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 37.5 bits (86), Expect = 1e-04
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
NLY+ NL E ++ + ++ G + +G S+G + S E V
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS---SGTSRGVGFARMESTEKCEAV 75
Query: 131 MERLPTLELHGRKPMVAYPTRNVLYQF 157
+ + P V+ PT +L +F
Sbjct: 76 IGHFNGKFIKTP-PGVSAPTEPLLCKF 101
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 36.6 bits (84), Expect = 2e-04
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LYVGNL+ TE + IG K ++ F + +
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIG--PCKSCKMITEHTSNDPYCFVEFY--EHRDAAAALA 66
Query: 133 RLPTLELHGRKPMVAYPTR 151
+ ++ G++ V + T
Sbjct: 67 AMNGRKILGKEVKVNWATT 85
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.2 bits (83), Expect = 2e-04
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
+ V NL+ T E D+ + R + ++ + GQSKGF ++ E +
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTTGQSKGFAFISFHRREDAARA 66
Query: 131 MERLPTLELHGRKPMVAY 148
+ + V +
Sbjct: 67 IAGVSGFGYDHLILNVEW 84
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 35.9 bits (82), Expect = 2e-04
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
LY+ L TT+ D+ + + K + + + KG+ V S + +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 58
Query: 133 RLPTLELHGRK 143
L + +
Sbjct: 59 ALKASGVQAQM 69
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 35.5 bits (81), Expect = 4e-04
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
++VG + T E + D ++ + +G+ +GF VT +S+ ++
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQ--YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 62
Query: 133 RLPTLELHGRK 143
++G
Sbjct: 63 -QKYHTVNGHN 72
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 35.6 bits (81), Expect = 5e-04
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
+++ NL++ + E + + ++ D V+ + SKG ++E+
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKC 66
Query: 131 MERLPT------LELHGRKPMVAY 148
+ L+L GR+ V
Sbjct: 67 LAAASLEAEGGGLKLDGRQLKVDL 90
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.1 bits (80), Expect = 0.001
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
S+ S ++GNL + TE + + R + + + N + KGF
Sbjct: 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSN--PERLKGFGYAEFE 65
Query: 123 SEESMSLVMERLPTLELHGRKPMVAYPTR 151
+S+ + L L ++ V +
Sbjct: 66 DLDSLLSALS-LNEESLGNKRIRVDVADQ 93
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 33.8 bits (77), Expect = 0.002
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 10/81 (12%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLV 130
LYV T + A F + S + VT ES
Sbjct: 6 NTLYVYGED--MTPTLLRGA--------FSPFGNIIDLSMDPPRNCAFVTYEKMESADQA 55
Query: 131 MERLPTLELHGRKPMVAYPTR 151
+ L ++ + V +
Sbjct: 56 VAELNGTQVESVQLKVNIARK 76
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 33.6 bits (76), Expect = 0.002
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 69 SHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
+ ++Y+ T D+ + + G I ++ + KG V S ES
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL---HKAFKGSIFVVFDSIESAK 61
Query: 129 LVMERLPTLELHGRKPMV 146
+E P + ++
Sbjct: 62 KFVE-TPGQKYKETDLLI 78
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 32.9 bits (74), Expect = 0.003
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 12/96 (12%)
Query: 73 LYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVME 132
+ V L + D+ D + ++ G V +E M+ +
Sbjct: 3 VVVSGLPPSGSWQDL---------KDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVR 53
Query: 133 RLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRSR 168
+L + + AY ++P RSR
Sbjct: 54 KLDNTKFRSHEGETAYIRVK---VDGPRSPSYGRSR 86
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 32.8 bits (74), Expect = 0.003
Identities = 6/85 (7%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
Query: 67 SSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEES 126
+ + + NL+ + ++ + + + +++S
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 60
Query: 127 MSLVMERLPTLELHGRKPMVAYPTR 151
++ + L R+ V+ +
Sbjct: 61 AERALQ-MNRSLLGNREISVSLADK 84
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 33.3 bits (75), Expect = 0.006
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 2/90 (2%)
Query: 59 SHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCT 118
NL V + E + G + + + QS+G+
Sbjct: 31 PPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRE--TRQSRGYGF 88
Query: 119 VTLGSEESMSLVMERLPTLELHGRKPMVAY 148
V S S + L + ++ VA
Sbjct: 89 VKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 32.9 bits (74), Expect = 0.007
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 10/91 (10%)
Query: 61 HHSQATSSSHCNL-YVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTV 119
HH C L + G+L T D+ + G +ID +
Sbjct: 1 HHGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG--------AKEGII 52
Query: 120 TLGSEESMSLV-MERLPTLELHGRKPMVAYP 149
+ +L + L R V +
Sbjct: 53 LFKEKAKEALGKAKDANNGNLQLRNKEVTWE 83
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 32.3 bits (73), Expect = 0.008
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
L+VG L T+ A ++ F + + F + S ++
Sbjct: 19 RLWVGGLGPNTSLAALARE--------FDRFGSIRTIDHVKGDSFAYIQYESLDAAQAAC 70
Query: 132 ERLPTLELHGR 142
++ L G
Sbjct: 71 AKMRGFPLGGP 81
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.0 bits (72), Expect = 0.009
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
S S++ +++ L + TE D+ + + +G+ G V
Sbjct: 8 SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGP----DGRVTGEADVEFA 63
Query: 123 SEESMSLVMERLPTLELHGRKPMVAYPTR 151
+ E M + + R + +
Sbjct: 64 THEDAVAAMAKDKA-NMQHRYVELFLNST 91
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 31.4 bits (70), Expect = 0.011
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
+Q + L++ NL T E +S F K N F
Sbjct: 1 AQTEQPPNQILFLTNLPEETNEMMLSMLFNQ-----FPGFKEVRLVPNRHDIAFVEF--T 53
Query: 123 SEESMSLVMERLPTLELHGRKPM 145
+E + E L ++ M
Sbjct: 54 TELQSNAAKEALQGFKITPTHAM 76
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 32.0 bits (72), Expect = 0.011
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 9/104 (8%)
Query: 70 HCNLYVGNLTWW-TTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMS 128
+ L V NL T + G + + F + + +
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMA--DGNQAQ 54
Query: 129 LVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRSRRSYR 172
L M L +LHG+ + +++ Q + + Y
Sbjct: 55 LAMSHLNGHKLHGKPIRITL-SKHQNVQLPREGQEDQGLTKDYG 97
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 32.2 bits (72), Expect = 0.012
Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 8/120 (6%)
Query: 48 RSPARYRHHRYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFEN 107
+SP+ + R S++ + +Y+ L + + D + + D +
Sbjct: 1 KSPSGQKRSR-----SRSPHEAGFCVYLKGLPFEAENKHVIDFFKKL--DIVEDSIYIAY 53
Query: 108 ASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRS 167
NG++ G V +E + R + R V T+ + + R +S
Sbjct: 54 GPNGKATGEGFVEFRNEADYKAALCRHKQ-YMGNRFIQVHPITKKGMLEKIDMIRKRLQS 112
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 31.3 bits (70), Expect = 0.015
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIG-VPDFIDVKFFENASNGQS---KGFCTVTLGSEESM 127
++V L+ + ++ G V + S S VT E
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 128 SLVMERLPTLELHGRK 143
++ + + + GR
Sbjct: 70 LRAIQCVNNVVVDGRT 85
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 31.5 bits (70), Expect = 0.016
Identities = 12/108 (11%), Positives = 23/108 (21%), Gaps = 8/108 (7%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
S ++ S + NL T A++ + V E V
Sbjct: 3 SGSSGRSKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPEG------GITAIVEFL 54
Query: 123 SEESMSLVMERLPTLELHGRKPMVAYPTRNVLYQFEAQNPLRSRSRRS 170
L + H + + V + +
Sbjct: 55 EPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAE 102
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 31.1 bits (70), Expect = 0.021
Identities = 10/86 (11%), Positives = 20/86 (23%), Gaps = 8/86 (9%)
Query: 65 ATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSE 124
A S + V NL + T + G I ++ +
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK------NNQFQALLQYADP 55
Query: 125 ESMSLVMERLPTLELH--GRKPMVAY 148
S L ++ + +
Sbjct: 56 VSAQHAKLSLDGQNIYNACCTLRIDF 81
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 30.5 bits (68), Expect = 0.035
Identities = 10/105 (9%), Positives = 29/105 (27%), Gaps = 13/105 (12%)
Query: 51 ARYRHHRYSHHHSQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASN 110
A++ R+ + + ++ + G L + + +
Sbjct: 1 AKHTLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPV--------LEKCGLVDALLM 52
Query: 111 GQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAYPTRNVLY 155
+K + + E L+G++ + + LY
Sbjct: 53 PPNKPYSFARYRTTEESKRAYV-----TLNGKEVVDDLGQKITLY 92
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 29.4 bits (65), Expect = 0.053
Identities = 9/79 (11%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
+ V NL + + + G +DV ++ F + + +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK----KNFRFARIEFARYDGALAAI 57
Query: 132 ERLPTLELHGRKPMVAYPT 150
+ + + +V++ T
Sbjct: 58 TKTHK-VVGQNEIIVSHLT 75
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 29.4 bits (65), Expect = 0.096
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 7/102 (6%)
Query: 67 SSSHCNLYVGNLTW-WTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEE 125
SS L +E++ S+ F +S + +
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESL----FRTYDKDTTFQYFKSFKRVRINFSNPL 57
Query: 126 SMSLVMERLPTLELHGR--KPMVAYPTRNVLYQFEAQNPLRS 165
S + RL E G+ K A NP +S
Sbjct: 58 SAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKS 99
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.6 bits (58), Expect = 0.62
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 71 CNLYVGNLTWWTTEADMSDAIRSIG 95
L++ N+ +E D+ S G
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNG 35
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 26.7 bits (58), Expect = 0.81
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 63 SQATSSSHCNLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLG 122
S S ++V L EAD+ +A+ G ++ + F+ V
Sbjct: 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR--------QALVEFE 59
Query: 123 SEESMSLVMERLPT--LELHGRKPMVAYPTR 151
+ +S + + + G++ Y T
Sbjct: 60 NIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90
>d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 149
Score = 25.4 bits (55), Expect = 2.5
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 8/76 (10%)
Query: 29 DDIDLYDDVTLQPFPEHTGRSPARYRHHRYSHHHSQATSSSHCNLYVGNLTWWTTEADMS 88
++++L+ D T H P R + + + L +
Sbjct: 28 EEVNLFADATGDHQWIHV--DPERAAAGPFGTTIAHGFMTLAL------LPRLQHQMYTV 79
Query: 89 DAIRSIGVPDFIDVKF 104
++ V+F
Sbjct: 80 KGVKLAINYGLNKVRF 95
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 24.9 bits (54), Expect = 3.1
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 96 VPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVMERLPTLELHGRKPMVAY 148
+ F+ G +V+ E ++ L GR+
Sbjct: 43 FGQIRKLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQA 91
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 24.5 bits (52), Expect = 3.1
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 73 LYVGNLTWWTTEADMSDAIRS 93
+ + L T ++ D +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSD 21
>d2nvna1 d.18.1.3 (A:1-121) Hypothetical protein syc2379_c
{Synechococcus sp. pcc 7942 [TaxId: 1140]}
Length = 121
Score = 24.3 bits (53), Expect = 5.8
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 1/21 (4%)
Query: 124 EESMSLVMERLP-TLELHGRK 143
EE + + E LE G
Sbjct: 64 EERLQIEAESALLWLEAEGFA 84
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 24.9 bits (54), Expect = 6.3
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 4 YDDAILGMGPTDTNTSPGEHVSTEHDDIDLYDDVTLQPFPEHTG-----RSPARYRHHRY 58
Y +A+ G G HV T ++ + D + E G + + +
Sbjct: 115 YLNALTGKGV---------HVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKR 165
Query: 59 SHHHSQATSSSH 70
+ + T S++
Sbjct: 166 EAYAADITYSTN 177
>d1ogpa2 d.176.1.1 (A:2-262) Sulfite oxidase, middle catalytic
domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 261
Score = 24.7 bits (53), Expect = 6.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 132 ERLPTLELHGRKPMVAYPTRNVLYQ 156
R P+L+++ ++P A P R+ L
Sbjct: 14 PRHPSLKVNAKEPFNAEPPRSALVS 38
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857
{Porphyromonas gingivalis [TaxId: 837]}
Length = 111
Score = 23.9 bits (52), Expect = 6.6
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 51 ARYRHHRYSHHHSQATSSSHCNLYVGN 77
R R + + ++ NL+ G
Sbjct: 39 ERLRSRQIPYFAQPTPNTERTNLFFGC 65
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 151
Score = 24.4 bits (52), Expect = 7.7
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 6/83 (7%)
Query: 29 DDIDLYDDVTLQPFPEHTGRSPARYRHHRYSHHHSQATSSSHCNLYVGNLTWWTTEADMS 88
DI + +T FP HT + + +Q L +
Sbjct: 26 TDIWTFAYLTADFFPLHT--DVEFAKKTIFGKPIAQ----GMLVLSIALGMVDQVILSNY 79
Query: 89 DAIRSIGVPDFIDVKFFENASNG 111
D I DV+F G
Sbjct: 80 DVSSVIAFFGIKDVRFLRPVFIG 102
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human
papillomavirus type 31 [TaxId: 10585]}
Length = 82
Score = 23.5 bits (51), Expect = 8.0
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 11/35 (31%)
Query: 52 RYRHHRYSHHHSQATSSSHCNLYVGNLTWWTTEAD 86
RYR +Y + Q +S TW T D
Sbjct: 19 RYRLSKYKQLYEQVSS-----------TWHWTCTD 42
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 23.3 bits (49), Expect = 9.3
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 6/83 (7%)
Query: 72 NLYVGNLTWWTTEADMSDAIRSIGVPDFIDVKFFENASNGQSKGFCTVTLGSEESMSLVM 131
L++ L TE ++ G I + +N + F + +
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN------QAFLELATEEAAITMVNY 63
Query: 132 ERLPTLELHGRKPMVAYPTRNVL 154
T L + + Y L
Sbjct: 64 YSAVTPHLRNQPIYIQYSNHKEL 86
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.404
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 654,094
Number of extensions: 27834
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 94
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)