Query psy8002
Match_columns 469
No_of_seqs 229 out of 1685
Neff 9.9
Searched_HMMs 46136
Date Sat Aug 17 00:19:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0959|consensus 100.0 6.2E-73 1.3E-77 580.2 43.4 449 18-468 450-914 (974)
2 COG1025 Ptr Secreted/periplasm 100.0 8.4E-65 1.8E-69 511.2 42.2 446 6-465 433-896 (937)
3 PRK15101 protease3; Provisiona 100.0 3.5E-61 7.6E-66 526.8 49.1 438 18-466 464-918 (961)
4 COG0612 PqqL Predicted Zn-depe 100.0 1.1E-26 2.3E-31 233.1 29.2 384 68-465 17-421 (438)
5 PRK15101 protease3; Provisiona 99.9 3.8E-21 8.1E-26 211.4 30.5 384 66-465 42-452 (961)
6 TIGR02110 PQQ_syn_pqqF coenzym 99.9 6E-21 1.3E-25 195.9 28.4 321 71-409 3-348 (696)
7 KOG0960|consensus 99.9 4.7E-19 1E-23 162.3 25.4 380 70-467 36-441 (467)
8 KOG2067|consensus 99.8 4.6E-17 9.9E-22 149.5 25.0 378 72-465 29-435 (472)
9 PTZ00432 falcilysin; Provision 99.8 3.3E-16 7.1E-21 171.2 29.1 389 70-465 94-563 (1119)
10 PF05193 Peptidase_M16_C: Pept 99.6 2E-15 4.3E-20 132.8 13.3 171 228-407 1-184 (184)
11 COG1026 Predicted Zn-dependent 99.3 2.2E-09 4.7E-14 111.4 26.4 370 74-466 28-448 (978)
12 COG1025 Ptr Secreted/periplasm 99.2 1.2E-08 2.6E-13 105.5 28.5 323 68-404 24-372 (937)
13 PTZ00432 falcilysin; Provision 99.2 3.9E-08 8.4E-13 108.5 32.4 372 74-464 666-1091(1119)
14 COG1026 Predicted Zn-dependent 99.2 1.7E-08 3.7E-13 104.8 26.2 395 46-464 506-945 (978)
15 KOG2583|consensus 99.1 6.8E-07 1.5E-11 83.5 29.3 353 73-463 28-409 (429)
16 KOG0961|consensus 99.0 8.5E-08 1.9E-12 94.8 20.5 311 143-466 97-447 (1022)
17 TIGR02110 PQQ_syn_pqqF coenzym 98.9 5.9E-08 1.3E-12 100.8 15.9 221 116-385 469-695 (696)
18 KOG0959|consensus 98.8 2.5E-06 5.4E-11 90.2 25.7 202 68-274 28-243 (974)
19 PF00675 Peptidase_M16: Insuli 98.8 6.3E-08 1.4E-12 82.0 10.2 132 78-214 1-137 (149)
20 KOG2019|consensus 98.7 4.6E-06 9.9E-11 83.0 23.2 374 69-466 55-485 (998)
21 KOG0961|consensus 98.6 2.5E-06 5.5E-11 84.7 16.8 308 147-464 636-971 (1022)
22 KOG2019|consensus 98.1 0.0037 8.1E-08 63.0 25.6 394 45-464 539-972 (998)
23 KOG2067|consensus 96.9 0.0099 2.1E-07 56.3 10.7 140 110-257 305-446 (472)
24 KOG0960|consensus 96.6 0.041 8.9E-07 52.2 12.6 175 75-256 257-450 (467)
25 COG0612 PqqL Predicted Zn-depe 95.8 0.075 1.6E-06 53.6 10.9 99 156-257 331-433 (438)
26 PF08367 M16C_assoc: Peptidase 95.6 0.038 8.2E-07 50.9 7.0 149 39-194 41-208 (248)
27 PF05193 Peptidase_M16_C: Pept 91.8 0.94 2E-05 38.8 8.3 42 147-188 142-184 (184)
28 PF09851 SHOCT: Short C-termin 71.7 7.4 0.00016 22.7 3.3 16 393-408 15-30 (31)
29 PF00675 Peptidase_M16: Insuli 53.3 1.3E+02 0.0027 24.7 11.2 118 306-431 8-136 (149)
30 PF01729 QRPTase_C: Quinolinat 48.2 29 0.00063 29.7 4.2 41 226-266 106-147 (169)
31 cd08317 Death_ank Death domain 44.0 1.3E+02 0.0028 22.2 8.1 74 374-458 7-83 (84)
32 cd08805 Death_ank1 Death domai 42.6 1.1E+02 0.0023 22.8 5.9 54 394-457 26-82 (84)
33 PF05120 GvpG: Gas vesicle pro 40.3 99 0.0022 22.7 5.3 39 373-413 29-67 (79)
34 PF07295 DUF1451: Protein of u 39.6 2.2E+02 0.0048 23.7 8.0 41 373-414 12-52 (146)
35 cd08803 Death_ank3 Death domai 33.9 1.4E+02 0.0029 22.2 5.3 55 394-458 26-83 (84)
36 PF12674 Zn_ribbon_2: Putative 33.3 74 0.0016 23.4 3.8 40 226-272 39-78 (81)
37 PF14270 DUF4358: Domain of un 32.8 2.2E+02 0.0048 22.0 6.7 61 348-408 33-93 (106)
38 PF08621 RPAP1_N: RPAP1-like, 32.2 65 0.0014 21.1 3.0 23 390-412 10-32 (49)
39 PF06518 DUF1104: Protein of u 32.0 1.8E+02 0.0039 22.1 5.7 22 392-413 57-78 (93)
40 cd08334 DED_Caspase_8_10_repea 31.6 2E+02 0.0042 21.3 5.8 72 389-461 9-81 (83)
41 PF09568 RE_MjaI: MjaI restric 31.5 1.1E+02 0.0023 26.1 4.9 68 373-464 18-85 (170)
42 cd08305 Pyrin Pyrin: a protein 31.0 1.2E+02 0.0027 21.7 4.6 65 391-456 4-70 (73)
43 PF08494 DEAD_assoc: DEAD/H as 29.6 3.8E+02 0.0081 23.3 9.7 39 106-154 29-67 (187)
44 PLN02344 chorismate mutase 28.6 42 0.00091 30.8 2.2 61 3-72 65-130 (284)
45 KOG2583|consensus 27.5 6.1E+02 0.013 25.0 12.5 107 143-256 313-421 (429)
46 PRK08385 nicotinate-nucleotide 27.4 95 0.0021 29.0 4.4 41 226-266 208-251 (278)
47 cd08336 DED_FADD Death Effecto 26.1 2.7E+02 0.0058 20.5 5.9 66 392-461 11-81 (82)
48 PF07609 DUF1572: Protein of u 25.3 67 0.0015 27.3 2.7 30 375-404 5-37 (163)
49 KOG0795|consensus 24.9 46 0.00099 29.2 1.6 45 4-55 44-93 (262)
50 PF06464 DMAP_binding: DMAP1-b 23.7 1.7E+02 0.0037 23.0 4.6 39 373-413 5-43 (111)
51 PF10309 DUF2414: Protein of u 23.0 86 0.0019 21.8 2.4 22 446-467 13-34 (62)
52 TIGR01669 phage_XkdX phage unc 22.5 69 0.0015 20.6 1.7 34 230-263 5-40 (45)
53 PF08006 DUF1700: Protein of u 22.5 1.6E+02 0.0034 25.4 4.6 32 382-413 4-35 (181)
54 PF08671 SinI: Anti-repressor 22.1 97 0.0021 18.0 2.1 13 448-460 16-28 (30)
55 PF07521 RMMBL: RNA-metabolisi 22.0 53 0.0012 20.7 1.2 25 228-254 17-41 (43)
56 PRK05848 nicotinate-nucleotide 21.6 1.3E+02 0.0028 28.1 4.0 40 226-265 208-248 (273)
57 PRK06978 nicotinate-nucleotide 21.5 1.3E+02 0.0028 28.4 4.0 39 226-266 231-269 (294)
58 PF14659 Phage_int_SAM_3: Phag 20.9 77 0.0017 20.9 1.9 17 446-462 42-58 (58)
59 PRK09016 quinolinate phosphori 20.9 1.2E+02 0.0027 28.5 3.8 38 226-265 234-271 (296)
60 PRK07896 nicotinate-nucleotide 20.7 1.4E+02 0.0031 28.1 4.1 41 226-266 225-266 (289)
61 COG0157 NadC Nicotinate-nucleo 20.6 1.2E+02 0.0026 28.2 3.5 41 226-266 214-254 (280)
62 PF07735 FBA_2: F-box associat 20.5 99 0.0021 21.6 2.5 22 447-468 42-63 (70)
63 PF00531 Death: Death domain; 20.5 3.3E+02 0.0071 19.4 6.8 68 386-462 16-83 (83)
No 1
>KOG0959|consensus
Probab=100.00 E-value=6.2e-73 Score=580.24 Aligned_cols=449 Identities=41% Similarity=0.678 Sum_probs=425.1
Q ss_pred cccccccccccccccccH-HHHHhhcCC---------CCCCCCCCCCCccCCCCCCCCCCCeEEecCCCeeeeeecCCcc
Q psy8002 18 NNIVKSEFDKREYRGLEL-QNGMKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEY 87 (469)
Q Consensus 18 ~~~~~~~~y~~~Y~~~~i-~~~~~~~~~---------P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f 87 (469)
.....|+||||.|.+++| +++++.|.+ |.||.|||+||++++.+.+..++|++|.+++..+|||++|+.|
T Consensus 450 ~~d~~E~~ygt~y~~e~i~~~~~~~~~~~~~~~~l~lP~~nefI~t~f~~~~~~~~~~~~P~Li~~~~~~~lw~k~dd~f 529 (974)
T KOG0959|consen 450 KTDKAEPWYGTAYKVEDIPAEIIKEWENSHLNPELHLPTPNEFIPTDFSILPAPIPKLEYPVLISDTPFSELWYKQDDKF 529 (974)
T ss_pred ccccccceeccccccccCCHHHHHHhhccCccccccCCCCCcccccccccccccCccccCCeeeecCCcceeEEeccccc
Confidence 356689999999999999 999999954 9999999999999988767788999999999999999999999
Q ss_pred cccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeecCccHHHHHHHHHH
Q psy8002 88 RVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLD 167 (469)
Q Consensus 88 ~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~~ 167 (469)
++||+.+.+.+.+|.+..+|.+++++.+|..++.+.++|..|+|..||++++++.+..|+.++|+||+++++.+++.+++
T Consensus 530 ~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~ 609 (974)
T KOG0959|consen 530 NVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQ 609 (974)
T ss_pred ccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHhh
Q psy8002 168 KLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFI 247 (469)
Q Consensus 168 ~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~ 247 (469)
.|.++ .+++++|+.+|+.+.++++|...++|+.+|.+.+..++.+..|+.++++++++.++++|+..|...++++.++
T Consensus 610 ~~~~f--~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~ 687 (974)
T KOG0959|consen 610 MMANF--ELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHL 687 (974)
T ss_pred HHHhc--cccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhhe
Confidence 99999 9999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred heeeecCCChHHHHHHHHHHHHHHhcc-ccCCCCCcccccccceeecCCCCceEEecc-CCCCCCeEEEEEEecCCcChH
Q psy8002 248 EALIHGNANKQVGLSIVKMLEEKLQTK-LKAKPLLPSQLLRFREIKIPEKSNLVYETQ-NAVHKSSCIEAYYQCGVQELR 325 (469)
Q Consensus 248 ~~lv~Gn~~~~~a~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ns~v~~~~q~~~~~~~ 325 (469)
+++|+||+++++|.++++.+.+.+... +..+|..+.+..+.+.+.+|.|..+++... ++.++|+++++|||++..+.+
T Consensus 688 e~~i~GN~te~~A~~l~~~v~d~l~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~~~~~ 767 (974)
T KOG0959|consen 688 ELLIHGNLTEKEALQLLKSVLDILKSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGVQDTR 767 (974)
T ss_pred EEEEecCcchHHHHHHHHHHHhhhhccCCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEcccchhH
Confidence 999999999999999999999888332 234455555556778899999999887755 788899999999999999999
Q ss_pred hHHHHHHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy8002 326 DNVLLELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQ 401 (469)
Q Consensus 326 ~~~~~~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~ 401 (469)
+.+.+.|+.+++++|+| |++||||+|+++.+...|+.|+.+.|||+.++++++.||+.|++.+.+.+..|++++|+
T Consensus 768 ~~~~~~L~~~li~ep~Fd~LRTkeqLGYiv~~~~r~~~G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~~m~~e~Fe 847 (974)
T KOG0959|consen 768 DNAVLGLLEQLIKEPAFDQLRTKEQLGYIVSTGVRLNYGTVGLQITVQSEKSVDYLEERIESFLETFLEEIVEMSDEEFE 847 (974)
T ss_pred HHHHHHHHHHHhccchHHhhhhHHhhCeEeeeeeeeecCcceeEEEEccCCCchHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCCCCCC
Q psy8002 402 SHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYTESLN 468 (469)
Q Consensus 402 ~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~~s~~ 468 (469)
..+.+++..+.++++++..++.++|.+|..+.|+|++.++.++++++||++|+..|+.+++...+++
T Consensus 848 ~~~~~lI~~~~ek~~~l~~e~~~~w~ei~~~~y~f~r~~~~v~~l~~i~k~~~i~~f~~~~~~~a~~ 914 (974)
T KOG0959|consen 848 KHKSGLIASKLEKPKNLSEESSRYWDEIIIGQYNFDRDEKEVEALKKITKEDVINFFDEYIRKGAAK 914 (974)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhcchhhHHHHHHHHhhhHHHHHHHHHhhccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999877653
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-65 Score=511.24 Aligned_cols=446 Identities=28% Similarity=0.443 Sum_probs=398.7
Q ss_pred cccccccccccccccccccccccccccccH-HHHHhhcCC---------CCCCCCCCCCCccCCCCCCCCCCCeEEecCC
Q psy8002 6 CTGVGGACKARVNNIVKSEFDKREYRGLEL-QNGMKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSP 75 (469)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~y~~~Y~~~~i-~~~~~~~~~---------P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~ 75 (469)
.+....+... ++..++.|||++|.+.++ .+.+..|++ |.+|||||++|+++..+. .-+.|.++.+..
T Consensus 433 ~R~~lis~~~--~~~~~a~~~~~py~v~~~~~~~~~~~~~~~~~~~l~lP~~N~fIp~~~~~~~~~~-~~~~p~ll~~~~ 509 (937)
T COG1025 433 ARLWLISKLE--EHDKAAYFYGFPYQVDDYTAQPLDAWQQKADSIELSLPEPNPFIPDDVSLIKSEK-KFTFPQLLSEDP 509 (937)
T ss_pred eEEEEecCCC--CccccceeecCcceecchhhhhhhhhhcccccccccCCCCCCCCCcccccccccc-CCCCchhhhcCC
Confidence 3344444444 556789999999999999 999998876 999999999999976543 556899999999
Q ss_pred CeeeeeecCCcccc-cceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeec
Q psy8002 76 LIRAWHKQDDEYRV-PKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGY 154 (469)
Q Consensus 76 ~~~lw~~~d~~f~~-Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~ 154 (469)
+.++||++|+.|.+ ||+.+.+.|++|.+..||++.++..|++.+.++.|.+..|+|..||+++++.++.+|+.++++||
T Consensus 510 ~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~dal~~~~y~A~~aG~sfs~~~~~~Gl~ltisGf 589 (937)
T COG1025 510 NLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGF 589 (937)
T ss_pred CceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHHHHHHhhhhHHHhcceEEEeecCCCceEEEeecc
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHH
Q psy8002 155 SHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKL 234 (469)
Q Consensus 155 s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl 234 (469)
+++++.++..+++.+.+. .+++++|+.+|+++.++|++...+.|++++.+.+..++.++.|+.++++++|+.++++++
T Consensus 590 t~~lp~L~~~~l~~l~~~--~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~~s~~e~~~~l~~v~~~e~ 667 (937)
T COG1025 590 TQRLPQLLRAFLDGLFSL--PVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSREERRNALESVSVEEF 667 (937)
T ss_pred ccchHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCCcCHHHHHHHhhhccHHHH
Confidence 999999999999999999 999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEEeccC--CCCCCeE
Q psy8002 235 VEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQN--AVHKSSC 312 (469)
Q Consensus 235 ~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~ns~ 312 (469)
..|...++++.+++++|+||++.++|.++.+.+...+..... .. ...+.+.+++|.....+... ++..|++
T Consensus 668 ~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s-~~------~~~~~~~~~~~~~~~~e~~~~~~~~an~~ 740 (937)
T COG1025 668 AAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGS-TW------YRNPSVYLLKGGTRIFETVGGESDSANAA 740 (937)
T ss_pred HHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCC-cc------cCCCceeccCCCeeEeeeccCCcccccce
Confidence 999999999999999999999999999999987766654311 01 12234556667666554322 3334444
Q ss_pred EEEEEecCCcChHhHHHHHHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecCC-ChhHHHHHHHHHHHH
Q psy8002 313 IEAYYQCGVQELRDNVLLELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDK-HPLFVDSRIEAFLAQ 387 (469)
Q Consensus 313 v~~~~q~~~~~~~~~~~~~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~-~~~~l~~~I~~fl~~ 387 (469)
++ +..+..+.++.+...|+.++++.+|| ||+||||+|+++++...+..|+.|+|||+. +|+++.+||+.|++.
T Consensus 741 i~--~~~~~~~~~~~a~s~Ll~~l~~~~ff~~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~ 818 (937)
T COG1025 741 IL--YPQQYDEIKSSALSSLLGQLIHPWFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLET 818 (937)
T ss_pred eE--eccccchHHHHHHHHHHHHHHhHHhHHHhhhhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHH
Confidence 33 33333467888999999999999999 999999999999999999999999999998 899999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCCC
Q psy8002 388 MKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYTE 465 (469)
Q Consensus 388 ~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~~ 465 (469)
+...+.+|++++|+.+|+++++++.+++.|+.+++.|+|..|..|.++|+++++.++++++||++++.+|+...+...
T Consensus 819 ~~~~l~~ms~e~Fe~~k~alin~il~~~~nl~e~a~r~~~~~~~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~ 896 (937)
T COG1025 819 AEPELREMSEEDFEQIKKALINQILQPPQNLAEEASRLWKAFGRGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYE 896 (937)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHhccCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988754
No 3
>PRK15101 protease3; Provisional
Probab=100.00 E-value=3.5e-61 Score=526.77 Aligned_cols=438 Identities=22% Similarity=0.328 Sum_probs=389.3
Q ss_pred cccccccccccccccccH-HHHHhhcCC---------CCCCCCCCCCCccCCCCCCCCCCCeEEecCCCeeeeeecCCcc
Q psy8002 18 NNIVKSEFDKREYRGLEL-QNGMKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEY 87 (469)
Q Consensus 18 ~~~~~~~~y~~~Y~~~~i-~~~~~~~~~---------P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f 87 (469)
.+..+++||+|+|++++| +++++.|.. |++|||||+||+++..+. ....|+++.+++|++|||++|+.|
T Consensus 464 ~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~l~lP~~n~fip~~~~~~~~~~-~~~~p~~i~~~~g~~vw~~~d~~f 542 (961)
T PRK15101 464 PHNKTAYFVDAPYQVDKISEQTFADWQQKAQNIALSLPELNPYIPDDFSLIKADK-AYKHPELIVDEPGLRVVYMPSQYF 542 (961)
T ss_pred CCCccccccCCcceeecCCHHHHHHHhcCCCCccCCCCCCCCccCCCCeeccCCC-CCCCCeEEEcCCCeEEEEeCCCcc
Confidence 345579999999999999 999999975 999999999999987643 345799999999999999999999
Q ss_pred -cccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeecCccHHHHHHHHH
Q psy8002 88 -RVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVL 166 (469)
Q Consensus 88 -~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~ 166 (469)
.+||+.+.+.|.+|.+..++++.+++.|++.++++.+++..|.|.+||++++++ +.+|+.++++||+++++.+++.++
T Consensus 543 ~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll~~~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~ 621 (961)
T PRK15101 543 ADEPKADISLVLRNPKAMDSARNQVLFALNDYLAGLALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALL 621 (961)
T ss_pred ccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHHHHHHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHH
Confidence 599999999999999989999999999999999999999999999999999999 789999999999999999999999
Q ss_pred HHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHh
Q psy8002 167 DKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMF 246 (469)
Q Consensus 167 ~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~ 246 (469)
+.+.++ .+++++|+++|+.+++++++.....|+.++...+..+..++.|+..+..++|+++|++|+++|+++++++.+
T Consensus 622 d~l~~~--~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~py~~~~~~~~~l~~it~edl~~f~~~~~~~~~ 699 (961)
T PRK15101 622 EGYFSF--TPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPAQMLSQVPYFERDERRKLLPSITLKDVLAYRDALLSGAT 699 (961)
T ss_pred HHHhcC--CCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhce
Confidence 999999 999999999999999999997777899998887766666677777889999999999999999999999999
Q ss_pred hheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEEeccCCCCCCeEEEEEEecCCcChHh
Q psy8002 247 IEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRD 326 (469)
Q Consensus 247 ~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~ 326 (469)
++++|+||+++++|..+++.+.+.++..+. .. ...+.+.++++....+........+++++.++|.|..+...
T Consensus 700 ~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 772 (961)
T PRK15101 700 PEFLVVGNLTEEQVTTLARDVQKQLGADGT--EW-----WRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTGYDEYQS 772 (961)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhccCCc--cc-----ccccceEeCCCCeEEEecCCCCCCCeEEEEEEeCCCCCHHH
Confidence 999999999999999999999888864211 00 01122234444333333222334466777788888888889
Q ss_pred HHHHHHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecCC-ChhHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy8002 327 NVLLELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDK-HPLFVDSRIEAFLAQMKDLISNMPDEEFQ 401 (469)
Q Consensus 327 ~~~~~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~-~~~~l~~~I~~fl~~~~~~l~~~seeef~ 401 (469)
++++.+|++++++++| |++||||+|+|+.....++.++.+.|||+. +|+++.++|++|++++.+.+++||++||+
T Consensus 773 ~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~~lt~eE~~ 852 (961)
T PRK15101 773 SAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLRAMKPEEFA 852 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhceEEEEEeeccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999 999999999999999999999999999997 99999999999999987777899999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhh-cCCCC
Q psy8002 402 SHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKR-NYTES 466 (469)
Q Consensus 402 ~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~-~~~~s 466 (469)
++|+++++++..+++++.+++.++|.+|..++++|++.++.++.|++||++||++++++| +.+++
T Consensus 853 ~~k~~l~~~~~~~~~sl~~~a~~~~~~i~~~~~~fd~~~~~~~~i~~vT~edv~~~~~~~~~~~~~ 918 (961)
T PRK15101 853 QYQQALINQLLQAPQTLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVIEPQG 918 (961)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCcChHHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999988889999999999999999999999999998 66554
No 4
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=233.11 Aligned_cols=384 Identities=14% Similarity=0.070 Sum_probs=292.7
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccCceEEEee
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALN-----EYSYDAKLAGLAWDLSN 142 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~~~~ 142 (469)
.......||++++..++.+ +|.+.+.+.+..+....++...+++.++..|+.++.. ++...-+..|...+...
T Consensus 17 ~~~~~L~nGl~~~~~~~~~--~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 17 LQVFTLPNGLRVITYPNPT--APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ceEEEcCCCCEEEEEeCCC--CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 5666789999999999876 7899999999988878888889999999999988743 35555667787777776
Q ss_pred eCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCH
Q psy8002 143 TKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSK 219 (469)
Q Consensus 143 ~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~ 219 (469)
+.+.....++..+++++..++.+.+.+.++ .|+++.|+++|..++++++. ..++|...+...+...+++. + +++
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p--~f~~~~~e~Ek~vil~ei~~-~~d~p~~~~~~~l~~~~~~~~p~~~~~ 171 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNP--TFDEEEVEREKGVILEEIRM-RQDDPDDLAFERLLEALYGNHPLGRPI 171 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHh-hccCchHHHHHHHHHHhhccCCCCCCC
Confidence 666666666657889999999999999999 99999999999999999999 67789999999999999863 2 466
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCce
Q psy8002 220 TELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNL 299 (469)
Q Consensus 220 ~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (469)
.+..+.|+++|.+||++|+++||.+.++.++|+||++.+++..++++.++.++.. .+ +.+.. ......+...
T Consensus 172 ~G~~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~-~~-~~~~~------~~~~~~~~~~ 243 (438)
T COG0612 172 LGTEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGA-AP-PPKIP------PEPPLGPERV 243 (438)
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCcc-CC-CCCCC------CccccCCCce
Confidence 7889999999999999999999999999999999999999999999999888751 11 11100 0000111111
Q ss_pred EEecc--CCCCCCeEEEEEEecCCcCh-HhHHHHHHHhhccC----CCcc----cccccCcEEEeeeeecCCeeeEEEEE
Q psy8002 300 VYETQ--NAVHKSSCIEAYYQCGVQEL-RDNVLLELFYPIPD----EHTH----YQEQLGYIVVSGIRKSSGVQGLRIIV 368 (469)
Q Consensus 300 ~~~~~--~~~~~ns~v~~~~q~~~~~~-~~~~~~~ll~~il~----~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~v 368 (469)
..... .++-...-+...+....... .+++.+.+++.+++ |++| ++++|.|.+++........+.+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~~ 323 (438)
T COG0612 244 VRVNDPEQPDLEQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIYA 323 (438)
T ss_pred EEecCCCCchhhhhhhhccccCcCcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccccccCCceEEE
Confidence 11111 01111222222333322221 24555555555554 7788 88899999998666665555565665
Q ss_pred ecC-CChhHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHH
Q psy8002 369 QSD-KHPLFVDSRIEAFLAQMKDLIS-NMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYL 446 (469)
Q Consensus 369 qs~-~~~~~l~~~I~~fl~~~~~~l~-~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l 446 (469)
... .+++.+.+.|++.+.++.+.+. .+|+++++..|..+.+.+....++....++.++.....+ ......+.+.+.|
T Consensus 324 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~i 402 (438)
T COG0612 324 GTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLG-GSLITLEELLERI 402 (438)
T ss_pred EecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhc-CCccCHHHHHHHH
Confidence 554 4888888888888887766542 489999999999999999999999999998887776543 2456678889999
Q ss_pred hcCCHHHHHHHHHhhcCCC
Q psy8002 447 KSVTKENVLKFYDKRNYTE 465 (469)
Q Consensus 447 ~~lT~edv~~~~~~~~~~~ 465 (469)
++||.+||++++++++.++
T Consensus 403 ~~vt~~dv~~~a~~~~~~~ 421 (438)
T COG0612 403 EAVTLEDVNAVAKKLLAPE 421 (438)
T ss_pred HhcCHHHHHHHHHHhcCCC
Confidence 9999999999999999875
No 5
>PRK15101 protease3; Provisional
Probab=99.89 E-value=3.8e-21 Score=211.39 Aligned_cols=384 Identities=10% Similarity=0.006 Sum_probs=267.8
Q ss_pred CCCeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccCceEE
Q psy8002 66 PHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE------YSYDAKLAGLAWD 139 (469)
Q Consensus 66 ~~P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e------~~y~a~~ag~~~~ 139 (469)
...+.+..+||+++++.+|.. .|++.+.+.+..|...+.+...+++.++..|+..+... +....+..|.+++
T Consensus 42 ~~~~~~~L~NGL~v~l~~~~~--~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 119 (961)
T PRK15101 42 RQYQAIRLDNGMTVLLVSDPQ--AVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHN 119 (961)
T ss_pred cceEEEEeCCCCEEEEEeCCC--CcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCcc
Confidence 456777889999999999885 68999999999888776667789999999999877532 2222344577888
Q ss_pred EeeeCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--
Q psy8002 140 LSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A-- 216 (469)
Q Consensus 140 ~~~~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~-- 216 (469)
.+.+.+.....++..++.++..|+.+.+.+.+| .++++.++++|..+..+++. ..++|...+...+...+++. +
T Consensus 120 A~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P--~f~~~~~erE~~~v~~E~~~-~~~~~~~~~~~~~~~~~~~~hp~~ 196 (961)
T PRK15101 120 ASTASYRTAFYLEVENDALPPAVDRLADAIAEP--LLDPKNADRERNAVNAELTM-ARSRDGMRMAQVSAETINPAHPGS 196 (961)
T ss_pred ceECCCceEEEEEcCHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHhhCCCCCCcc
Confidence 888888899999999999999999999999999 99999999999999999987 56678888888887777642 2
Q ss_pred CCHHHHHHHccCC----CHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceee
Q psy8002 217 WSKTELLESLDGI----TREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIK 292 (469)
Q Consensus 217 ~~~~~~~~~l~~i----t~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (469)
+...|..++|+.+ +.+++++|++++|++.++.++|+||++.+++..+++++++.++......+.. . .+. ..
T Consensus 197 ~~~~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~--~--~~~-~~ 271 (961)
T PRK15101 197 RFSGGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEI--T--VPV-VT 271 (961)
T ss_pred cCCCCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCC--C--CCC-CC
Confidence 3456778888887 6999999999999999999999999999999999999888876532111110 0 000 00
Q ss_pred c-CCCCceEEeccCCCCCCeEEEEEEecCCcCh-----HhHHHHHHHhhccCCCcc---cccccCcEEEeeeeec--CCe
Q psy8002 293 I-PEKSNLVYETQNAVHKSSCIEAYYQCGVQEL-----RDNVLLELFYPIPDEHTH---YQEQLGYIVVSGIRKS--SGV 361 (469)
Q Consensus 293 l-~~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~-----~~~~~~~ll~~il~~~~f---tk~qLgY~V~s~~~~~--~~~ 361 (469)
. +.+. .+... +..+.+.+.+.|.++.... ....+..+|++..++.++ .++||.|.|+++.... .+.
T Consensus 272 ~~~~~~-~~~~~--~~~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~~~~~ 348 (961)
T PRK15101 272 DAQKGI-IIHYV--PAQPRKVLRVEFRIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMVDRNS 348 (961)
T ss_pred HHHcCe-EEEEE--ECCCCcEEEEEEecCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeeccccccCCCc
Confidence 0 1121 12111 2223455666777654321 123444555555555555 8899999999886543 233
Q ss_pred eeEEEEEecCC-ChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCC-ChhhHHHHhHHhhhcccccccc
Q psy8002 362 QGLRIIVQSDK-HPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPK-KLSGLSSRFWLEITTQQYNFDR 438 (469)
Q Consensus 362 ~~~~~~vqs~~-~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~-sl~~~~~~~w~~i~~~~~~f~~ 438 (469)
+.+.+.++... ..+.+.+.++.+++++.... .++++++|+++|+.+......... ...+.+..+-..+ ..+.+..
T Consensus 349 g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 426 (961)
T PRK15101 349 GVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTM--LRVPVEH 426 (961)
T ss_pred eEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHh--hhCCHHH
Confidence 44555555321 22466677777777776655 789999999999988876643221 1112222222222 1233333
Q ss_pred chHHHHHHhcCCHHHHHHHHHhhcCCC
Q psy8002 439 ANIEVAYLKSVTKENVLKFYDKRNYTE 465 (469)
Q Consensus 439 ~~~~~~~l~~lT~edv~~~~~~~~~~~ 465 (469)
.......++.++.+++.++++. |.|+
T Consensus 427 ~l~~~~~~~~~~~~~i~~~~~~-l~~~ 452 (961)
T PRK15101 427 TLDAPYIADRYDPKAIKARLAE-MTPQ 452 (961)
T ss_pred heeCchhhhcCCHHHHHHHHhh-cCHh
Confidence 3334567888999999998877 6654
No 6
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.89 E-value=6e-21 Score=195.91 Aligned_cols=321 Identities=8% Similarity=-0.041 Sum_probs=230.0
Q ss_pred EecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccCceEEEeeeC
Q psy8002 71 LYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE------YSYDAKLAGLAWDLSNTK 144 (469)
Q Consensus 71 i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e------~~y~a~~ag~~~~~~~~~ 144 (469)
+..+||++|++.+|.. .|.+.+.+.+..+...+.+...+++.++..|+..+... +.-..+..|.+++.+.+.
T Consensus 3 ~tL~NGLrVllv~~p~--~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~ 80 (696)
T TIGR02110 3 ITLPNGLRVHLYHQPD--AKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLE 80 (696)
T ss_pred EEcCCCCEEEEEECCC--CCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcC
Confidence 4568999999999875 68999999999988777778889999999999887543 222334568889999999
Q ss_pred cceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-CC--CHHH
Q psy8002 145 YGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-AW--SKTE 221 (469)
Q Consensus 145 ~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~~--~~~~ 221 (469)
+...+.++..+++++..++.+.+++.+| .+++++|+++|+.++.+++. ..++|...+...+...+++. +| ...+
T Consensus 81 d~T~y~~~v~~~~l~~aL~lLaD~l~~P--~f~eeeierEr~vvl~Ei~~-~~ddp~~~~~~~l~~~l~~~HPy~~~~iG 157 (696)
T TIGR02110 81 RTTAFFFELPAAALAAGLARLCDMLARP--LLTAEDQQREREVLEAEYIA-WQNDADTLREAALLDALQAGHPLRRFHAG 157 (696)
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999999999999999999999999 99999999999999999988 67899898998888888743 33 3456
Q ss_pred HHHHccCCC---HHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCc
Q psy8002 222 LLESLDGIT---REKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSN 298 (469)
Q Consensus 222 ~~~~l~~it---~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (469)
..++|+.++ .+|+++|++++|.+.++.+.|+||++.+++.++++++++.++......+.. . .....+..
T Consensus 158 t~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~-----~---~p~~~~~~ 229 (696)
T TIGR02110 158 SRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAP-----P---APLLRFDR 229 (696)
T ss_pred CHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCC-----C---CCCCCCce
Confidence 677777655 999999999999999999999999999999999998887765432111100 0 00111112
Q ss_pred eEEeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhcc----CCCcc---cccccCcEEEeeeeecCCee--eEEEEEe
Q psy8002 299 LVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIP----DEHTH---YQEQLGYIVVSGIRKSSGVQ--GLRIIVQ 369 (469)
Q Consensus 299 ~~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il----~~~~f---tk~qLgY~V~s~~~~~~~~~--~~~~~vq 369 (469)
..+.. ...++..+.+.++.......+ .+.+++.+| ++++| .+++|+|.|+++. ...+.+ .+.+++.
T Consensus 230 ~~~~~--~~~~q~~l~~~~p~~~~~d~~--al~lL~~iLg~g~sSrL~~~LRe~GLaysV~s~~-~~~~~g~~lf~I~~~ 304 (696)
T TIGR02110 230 LTLAG--GSEPRLWLLFALAGLPATARD--NVTLLCEFLQDEAPGGLLAQLRERGLAESVAATW-LYQDAGQALLALEFS 304 (696)
T ss_pred eEEEe--cCcceEEEEEeecCCCCCChH--HHHHHHHHhCCCcchHHHHHHHHCCCEEEEEEec-cccCCCCcEEEEEEE
Confidence 22221 122333333333332222222 345555555 45677 5589999999865 333322 4444444
Q ss_pred c----CCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy8002 370 S----DKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSA 409 (469)
Q Consensus 370 s----~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~ 409 (469)
. ..+.+.+.+.|.+.++.+.+..-+++.+|++++|+.=..
T Consensus 305 lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~~~~ 348 (696)
T TIGR02110 305 ARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQRRFQ 348 (696)
T ss_pred EcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhh
Confidence 3 125666666666666666542227899999999976333
No 7
>KOG0960|consensus
Probab=99.85 E-value=4.7e-19 Score=162.28 Aligned_cols=380 Identities=12% Similarity=0.102 Sum_probs=282.1
Q ss_pred EEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhccc-----ccCceEEEeeeC
Q psy8002 70 ILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAK-----LAGLAWDLSNTK 144 (469)
Q Consensus 70 ~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~-----~ag~~~~~~~~~ 144 (469)
+-...||+++---.+ ..+.+.+.+-|..+...+++++.+.+.++..|...+.....-.|. --|...+.+.+.
T Consensus 36 vttL~NGlrVaTE~~---~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytSR 112 (467)
T KOG0960|consen 36 VTTLPNGLRVATEHN---SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTSR 112 (467)
T ss_pred EEEcCCCcEEEeccC---CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhcccccc
Confidence 344688988865553 367899999999999999999999999999998877654333222 236666777777
Q ss_pred cceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCC---CCHHH
Q psy8002 145 YGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERA---WSKTE 221 (469)
Q Consensus 145 ~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~---~~~~~ 221 (469)
+.....+..++..++..++.+.|.+++- .+.+..++++|..++|+.+... .+-....++.+....+.+. .+..+
T Consensus 113 eqT~yyakal~~dv~kavdiLaDIlqns--~L~~s~IerER~vILrEmqevd-~~~~eVVfdhLHatafQgtPL~~tilG 189 (467)
T KOG0960|consen 113 EQTVYYAKALSKDVPKAVDILADILQNS--KLEESAIERERDVILREMQEVD-KNHQEVVFDHLHATAFQGTPLGRTILG 189 (467)
T ss_pred cceeeehhhccccchHHHHHHHHHHHhC--ccchhHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhcCCcccccccC
Confidence 7888899999999999999999999999 9999999999999999998843 3344667777877776542 46678
Q ss_pred HHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEE
Q psy8002 222 LLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVY 301 (469)
Q Consensus 222 ~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (469)
-.+.|++|+.+||++|.++.|.+.++.+...|+++-+++.++++++++.++....+...+ ..+..+ + .|..+.+
T Consensus 190 p~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~--~~~~~~---F-tgsEvR~ 263 (467)
T KOG0960|consen 190 PSENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVP--LVPPAR---F-TGSEVRV 263 (467)
T ss_pred hhhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCC--CCCCcc---c-cCceeee
Confidence 889999999999999999999999999999999999999999999988765421111111 000000 1 2333333
Q ss_pred eccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccCCC--cc--------------cccccC--cEEEeeeeecCCeee
Q psy8002 302 ETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEH--TH--------------YQEQLG--YIVVSGIRKSSGVQG 363 (469)
Q Consensus 302 ~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~~~--~f--------------tk~qLg--Y~V~s~~~~~~~~~~ 363 (469)
.+++-|-..+.+.........+++..+.+.++|+++. .+ -.-+|+ |.-++..+...|..|
T Consensus 264 --rdd~lP~a~~AiAVEG~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFnt~YkDTGLwG 341 (467)
T KOG0960|consen 264 --RDDDLPLAHIAIAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFNTSYKDTGLWG 341 (467)
T ss_pred --cCCCCchhheeeeEecCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhhccccccccee
Confidence 2344455555555555567788888899999988742 21 334565 344444444455566
Q ss_pred EEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHH
Q psy8002 364 LRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEV 443 (469)
Q Consensus 364 ~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~ 443 (469)
+.|+.- ++..++..|...+.++.++-..+||.|.+++|+.|..++....+.-.-.+.....+++..+-.. ...+.-
T Consensus 342 ~y~V~~---~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri-~l~El~ 417 (467)
T KOG0960|consen 342 IYFVTD---NLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRI-PLAELE 417 (467)
T ss_pred EEEEec---ChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcC-ChHHHH
Confidence 555421 7778888888999998876678999999999999999999887777777877777766543222 235667
Q ss_pred HHHhcCCHHHHHHHHHhhcCCCCC
Q psy8002 444 AYLKSVTKENVLKFYDKRNYTESL 467 (469)
Q Consensus 444 ~~l~~lT~edv~~~~~~~~~~~s~ 467 (469)
++|.+||.++|.+++.+|+....+
T Consensus 418 ~rId~vt~~~Vr~va~k~iyd~~i 441 (467)
T KOG0960|consen 418 ARIDAVTAKDVREVASKYIYDKDI 441 (467)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCc
Confidence 889999999999999999976543
No 8
>KOG2067|consensus
Probab=99.80 E-value=4.6e-17 Score=149.54 Aligned_cols=378 Identities=13% Similarity=0.058 Sum_probs=278.5
Q ss_pred ecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhh-----hhhhcccccCceEEEeeeCcc
Q psy8002 72 YNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALN-----EYSYDAKLAGLAWDLSNTKYG 146 (469)
Q Consensus 72 ~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~-----e~~y~a~~ag~~~~~~~~~~g 146 (469)
...||+++--. ++++ |-+.+.+.+.++..++.+.-.+.+.++..+--.+.. +..-..+..|..++.+.+.+.
T Consensus 29 tL~NGlkvase--~~pg-~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRet 105 (472)
T KOG2067|consen 29 TLPNGLKVASE--NTPG-QFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQSSRET 105 (472)
T ss_pred ecCCccEEecc--CCCC-CceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCcccccccHhh
Confidence 46789887433 3553 679999999999998888888999999888766432 444455667888888888888
Q ss_pred eEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-C--CCHHHHH
Q psy8002 147 MMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-A--WSKTELL 223 (469)
Q Consensus 147 ~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~--~~~~~~~ 223 (469)
..-.++.+++.++.+++.++|.+.+| .+++++.+.+|..+.-++.. .-.+|.-...+.+....+.. . .+...-.
T Consensus 106 m~Yaas~~~~~v~sm~~lLadtV~~P--~~~d~ev~~~~~~v~~E~~e-l~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~ 182 (472)
T KOG2067|consen 106 MMYAASADSDGVDSMVELLADTVLNP--KFTDQEVEEARRAVKYEIEE-LWMRPEPLLTEMIHSAAYSGNTLGLPLLCPE 182 (472)
T ss_pred hHHHHHhhhcccHHHHHHHHHHHhcc--cccHHHHHHHHHhhhheccc-cccCchhhHHHHHHHHHhccCcccccccCCh
Confidence 88899999999999999999999999 99999999999988877777 44578777777777766643 2 1222235
Q ss_pred HHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCC--cccccccceeecCCCCceEE
Q psy8002 224 ESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLL--PSQLLRFREIKIPEKSNLVY 301 (469)
Q Consensus 224 ~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 301 (469)
+.+..|+.+.+.+|.+.++.+.++.+-.+| ++-+++.++++++++.+++... .++. ..++..- ...++..... +
T Consensus 183 ~~i~~I~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s~~~-p~i~~~~aQYtGG-~~~~~~d~~~-~ 258 (472)
T KOG2067|consen 183 ENIDKINREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKV-PPIDESKAQYTGG-ELKIDTDAPQ-V 258 (472)
T ss_pred hhhhhhhHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCccCC-CCcccchhhcccc-ccccCCCCcc-c
Confidence 789999999999999999999999888888 8999999999999888775311 1111 0111000 0111110000 0
Q ss_pred eccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccCC---------------Ccc----cccccCcEEEeeeeecCCee
Q psy8002 302 ETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDE---------------HTH----YQEQLGYIVVSGIRKSSGVQ 362 (469)
Q Consensus 302 ~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~~---------------~~f----tk~qLgY~V~s~~~~~~~~~ 362 (469)
- ..+ .-+-|++.+.......++.+++.+|+.+|+. ++| .+-+.-|+.-++...+.+.+
T Consensus 259 ~-~g~--EltHv~lg~Eg~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtG 335 (472)
T KOG2067|consen 259 T-GGP--ELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTG 335 (472)
T ss_pred c-Ccc--ceeeeeEeeccCCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCc
Confidence 0 001 2234566666666777899999999998862 334 66677788888888888766
Q ss_pred eEEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHH
Q psy8002 363 GLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIE 442 (469)
Q Consensus 363 ~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~ 442 (469)
-|.++. +..|+.+.+.++....++.....+++++|++++|.++.+.+....++---.+...-.+|+... .--..++.
T Consensus 336 lfgi~~--s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g-~rk~p~e~ 412 (472)
T KOG2067|consen 336 LFGIYA--SAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTG-ERKPPDEF 412 (472)
T ss_pred eeEEec--cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhcc-CcCCHHHH
Confidence 666553 358999999999999999888789999999999999999998765553334455555665543 22345789
Q ss_pred HHHHhcCCHHHHHHHHHhhcCCC
Q psy8002 443 VAYLKSVTKENVLKFYDKRNYTE 465 (469)
Q Consensus 443 ~~~l~~lT~edv~~~~~~~~~~~ 465 (469)
++.|+++|++|+.+++++.+...
T Consensus 413 ~~~Ie~lt~~DI~rva~kvlt~~ 435 (472)
T KOG2067|consen 413 IKKIEQLTPSDISRVASKVLTGK 435 (472)
T ss_pred HHHHHhcCHHHHHHHHHHHhcCC
Confidence 99999999999999999988643
No 9
>PTZ00432 falcilysin; Provisional
Probab=99.76 E-value=3.3e-16 Score=171.23 Aligned_cols=389 Identities=11% Similarity=0.024 Sum_probs=241.5
Q ss_pred EEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhh-----hhcccccC--ceEEEee
Q psy8002 70 ILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEY-----SYDAKLAG--LAWDLSN 142 (469)
Q Consensus 70 ~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~-----~y~a~~ag--~~~~~~~ 142 (469)
..+..+|+++++.+.+.-..|-..+.+.|.+|.. ...+++.++..++..+.... .....-.| ..++...
T Consensus 94 ~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~----d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T 169 (1119)
T PTZ00432 94 YSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPH----NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYT 169 (1119)
T ss_pred EEEcCCCCEEEEEecCCCccceeEEEEEecCCCC----CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccC
Confidence 4467799999998855422356788888888853 34689999999998765432 11111223 2345566
Q ss_pred eCcceEEEEeecCc-cHHHHHHHHHHHHccCCCCCChHHH--HH---------H--------------------HHHHHH
Q psy8002 143 TKYGMMLGISGYSH-KQSVLLSKVLDKLADFSNHIDPKRY--EI---------I--------------------KEQYYR 190 (469)
Q Consensus 143 ~~~g~~i~~~G~s~-~l~~ll~~i~~~l~~~~~~~~~~~f--~~---------~--------------------k~~~~~ 190 (469)
+.+.....++..++ .+..+++.+++.+.+| .++++.+ .+ . |..+..
T Consensus 170 ~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P--~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~ 247 (1119)
T PTZ00432 170 FKDRTSYLFASTNEKDFYNTADVYMDSVFQP--NILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYS 247 (1119)
T ss_pred CCCceEEEeccCCHHHHHHHHHHHHHHHhCc--CcccccchhhhhhhhccccccccccccccccccccccccchhhHHHH
Confidence 66778888888886 4999999999999999 9988753 32 1 556888
Q ss_pred HhccccccChHHHHHHHHHHhccCCC--CCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHH
Q psy8002 191 GLKNFEAEQPYQHAIYSISLCLFERA--WSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLE 268 (469)
Q Consensus 191 ~~~n~~~~~p~~~a~~~l~~~l~~~~--~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~ 268 (469)
+++. ..++|...+...+...++..+ +...|..++|..+|.+++++|++++|.+.++.++|+||++.+++.++++.++
T Consensus 248 Emk~-~~~~p~~~~~~~~~~~lf~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f 326 (1119)
T PTZ00432 248 EMKK-RFSDPLSFGYSVIYQNLFSNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDNYL 326 (1119)
T ss_pred HHHH-hhCCHHHHHHHHHHHHHhCCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHHHH
Confidence 8887 678899999988877666433 3456789999999999999999999999999999999999999999999988
Q ss_pred HHHhccccCCCCC-ccccccccee-ecCCCCc-eEEeccCCCCCCeEEEEE-EecCC------------cChHhHHHHHH
Q psy8002 269 EKLQTKLKAKPLL-PSQLLRFREI-KIPEKSN-LVYETQNAVHKSSCIEAY-YQCGV------------QELRDNVLLEL 332 (469)
Q Consensus 269 ~~l~~~~~~~~~~-~~~~~~~~~~-~l~~~~~-~~~~~~~~~~~ns~v~~~-~q~~~------------~~~~~~~~~~l 332 (469)
+.++......+.. +......... ....+.. ...........+..++.+ |.+++ .+..+..++.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~V 406 (1119)
T PTZ00432 327 TKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLV 406 (1119)
T ss_pred hhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHH
Confidence 7775431100000 0000000000 0001111 111111122223445554 76632 23356777788
Q ss_pred HhhccC----CCcc---cccccCcEE-EeeeeecCCeeeEEEEEecCC--C----hhHHHHHHHHHHHHHHHHH-cCCCH
Q psy8002 333 FYPIPD----EHTH---YQEQLGYIV-VSGIRKSSGVQGLRIIVQSDK--H----PLFVDSRIEAFLAQMKDLI-SNMPD 397 (469)
Q Consensus 333 l~~il~----~~~f---tk~qLgY~V-~s~~~~~~~~~~~~~~vqs~~--~----~~~l~~~I~~fl~~~~~~l-~~~se 397 (469)
|+.+|+ ++++ .+++|||.+ +++.....+.+.|.+.++... . ++.+++.++.+.+.+.+.. +++++
T Consensus 407 Ls~lLggg~sS~L~q~LrE~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~ 486 (1119)
T PTZ00432 407 LNYLLLGTPESVLYKALIDSGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNK 486 (1119)
T ss_pred HHHHHcCCCccHHHHHHHhcCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCH
Confidence 887774 7788 668999986 444444455555666665322 1 2223344444444444433 79999
Q ss_pred HHHHHHHHHHHHHhhcCCCCh----hhHHHHhHHhhhcccccccc--chHHHHHHhc-C--CHHHHHHHHHhhcCCC
Q psy8002 398 EEFQSHKEALSAQRLEKPKKL----SGLSSRFWLEITTQQYNFDR--ANIEVAYLKS-V--TKENVLKFYDKRNYTE 465 (469)
Q Consensus 398 eef~~~k~~l~~~l~~~~~sl----~~~~~~~w~~i~~~~~~f~~--~~~~~~~l~~-l--T~edv~~~~~~~~~~~ 465 (469)
+++++++..+.-.+.+...+- ...+.+....+..+.-.++. .+...+.|+. + +..-+.+..++||.++
T Consensus 487 eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y~e~Li~k~ll~N 563 (1119)
T PTZ00432 487 SAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKYLEKLIEKHLLNN 563 (1119)
T ss_pred HHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHHHHHHHHHHccCC
Confidence 999999999988887753220 11112221222222212221 2233444432 2 2245888889988754
No 10
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.65 E-value=2e-15 Score=132.79 Aligned_cols=171 Identities=20% Similarity=0.217 Sum_probs=118.5
Q ss_pred CCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccc---cCCCCCcccccccceeecCCCCceEEecc
Q psy8002 228 GITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKL---KAKPLLPSQLLRFREIKIPEKSNLVYETQ 304 (469)
Q Consensus 228 ~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 304 (469)
++|.+++++|++++|.+.++.++|+||++.+++.+++++.++.++... ...+.. .......+.+.......
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~- 74 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRS-----PPLPPSEPQGKEIVIPS- 74 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSS-----SSSSCGGSSEEEEEEEE-
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhccccccccccccc-----ccccccccccccccccc-
Confidence 479999999999999999999999999999999999999888877542 111110 00001111122222221
Q ss_pred CCCCCCeEEEEEEecCCc-ChHhHHHHHHHhhccCCC----cc----cccccCcEEEeeeeecCCeeeEEEEEecCCChh
Q psy8002 305 NAVHKSSCIEAYYQCGVQ-ELRDNVLLELFYPIPDEH----TH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPL 375 (469)
Q Consensus 305 ~~~~~ns~v~~~~q~~~~-~~~~~~~~~ll~~il~~~----~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~ 375 (469)
.+...+.+.++|+.+.. +.++...+.++..+|++. +| ++++++|.|+++.....+.+.+.+.++. +++
T Consensus 75 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~--~~~ 151 (184)
T PF05193_consen 75 -KDESQSIVSIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQV--TPE 151 (184)
T ss_dssp -SSSSSEEEEEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEE--EGG
T ss_pred -ccccccccccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEc--Ccc
Confidence 22256778888887665 667777777777776654 77 7999999999997766765555555543 445
Q ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Q psy8002 376 FVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEAL 407 (469)
Q Consensus 376 ~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l 407 (469)
.++++++.+++.+.+.. .+++++||+++|+.|
T Consensus 152 ~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 152 NLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp GHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 77778888888877766 469999999999875
No 11
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.28 E-value=2.2e-09 Score=111.38 Aligned_cols=370 Identities=13% Similarity=0.071 Sum_probs=228.5
Q ss_pred CCCeeeeeecCCcccccceEEEEEEECCCCCCCH-----HHHHH--------HHHHHHHHHHhhhhhhhcccccCceEEE
Q psy8002 74 SPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDP-----ECTNM--------THLFISLFKDALNEYSYDAKLAGLAWDL 140 (469)
Q Consensus 74 ~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~-----~~~~l--------~~l~~~ll~~~l~e~~y~a~~ag~~~~~ 140 (469)
..|.++.|.... -|...++|.|.++.-..+- ++.++ -+.+..+++.+|+-+.=. +-+-++.+
T Consensus 28 ~TGa~l~hi~~~---d~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA--~T~~D~T~ 102 (978)
T COG1026 28 KTGAELAHIKNE---DPNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNA--FTFPDKTV 102 (978)
T ss_pred cCCceEEEecCC---CcCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhh--ccCCCcce
Confidence 379999999865 3788999999987643321 11111 223445555555432211 22223333
Q ss_pred eeeCcceEEEEeecC-ccHHHHHHHHHHHHccCCCCCChHHHHHHH--------------HHHHHHhccccccChHHHHH
Q psy8002 141 SNTKYGMMLGISGYS-HKQSVLLSKVLDKLADFSNHIDPKRYEIIK--------------EQYYRGLKNFEAEQPYQHAI 205 (469)
Q Consensus 141 ~~~~~g~~i~~~G~s-~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k--------------~~~~~~~~n~~~~~p~~~a~ 205 (469)
++-. .-+ +.+-.|+...+|.+.+| -.+++.|.++- -.+-.+.+. ...+|.....
T Consensus 103 YP~s--------S~~~~Df~NLl~VYlDavf~P--lL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKG-a~ss~~~~~~ 171 (978)
T COG1026 103 YPAS--------SANEKDFYNLLSVYLDAVFHP--LLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKG-AYSSGESVLS 171 (978)
T ss_pred eecc--------ccCcchHHHHHHHHHHhhhCc--ccchHHHhhhhhccccCCCccceeeeEEeehhcc-cccCchhHHH
Confidence 3321 111 23567899999999999 89998887652 123345555 5678999999
Q ss_pred HHHHHhccCCC---CCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHH-HHHHhccccCCCCC
Q psy8002 206 YSISLCLFERA---WSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKML-EEKLQTKLKAKPLL 281 (469)
Q Consensus 206 ~~l~~~l~~~~---~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~-~~~l~~~~~~~~~~ 281 (469)
..+...+++.. +...|.-..|..+|+|++++||+++|.+.++.++++||++.++..+.++.. +..++......+++
T Consensus 172 ~~~~~slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~ 251 (978)
T COG1026 172 RAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIP 251 (978)
T ss_pred HHHHHhhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCC
Confidence 99999998642 344567789999999999999999999999999999999999998887664 22222221111222
Q ss_pred cccccccceeecCCCCceEEec--cCCCCCCeEEEEEEecCC-cChHhHHHHHHHhhccC----CCcc---cccccC-cE
Q psy8002 282 PSQLLRFREIKIPEKSNLVYET--QNAVHKSSCIEAYYQCGV-QELRDNVLLELFYPIPD----EHTH---YQEQLG-YI 350 (469)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~--~~~~~~ns~v~~~~q~~~-~~~~~~~~~~ll~~il~----~~~f---tk~qLg-Y~ 350 (469)
. ...+.-|......+.. ...+..+..+.+.|-.+. .+.++..++.+|..+|. +||. .+.++| +.
T Consensus 252 ~-----~~~~~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~liesglg~~~ 326 (978)
T COG1026 252 D-----QKAFKKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIESGLGFAD 326 (978)
T ss_pred c-----ccccCcccccceeeccCCCCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHcCCCccc
Confidence 1 1111111111111221 122344556666677765 45567788899998874 5555 899999 66
Q ss_pred EEeeeeecCCeeeEEEEEecCC--ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhh--HHHHhH
Q psy8002 351 VVSGIRKSSGVQGLRIIVQSDK--HPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSG--LSSRFW 426 (469)
Q Consensus 351 V~s~~~~~~~~~~~~~~vqs~~--~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~--~~~~~w 426 (469)
+...+...-....+.+.+|+.. ..+.+.+.+-+.++++.+ .+++.+.++.++..+.-++.+-...... .+.++.
T Consensus 327 ~~g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~--~gi~~~~ie~~~~q~E~s~ke~~s~pfgl~l~~~~~ 404 (978)
T COG1026 327 VSGSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVK--NGIDKKLIEAILHQLEFSLKEVKSYPFGLGLMFRSL 404 (978)
T ss_pred ccceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhhhhhcCCCccHHHHHHhc
Confidence 6554555555566666777543 667777777777766654 6799999999998888777764222211 122222
Q ss_pred Hhhhcccccccc--chHHHHHHhc-CCHHH-HHHHHHhhcCCCC
Q psy8002 427 LEITTQQYNFDR--ANIEVAYLKS-VTKEN-VLKFYDKRNYTES 466 (469)
Q Consensus 427 ~~i~~~~~~f~~--~~~~~~~l~~-lT~ed-v~~~~~~~~~~~s 466 (469)
.-..+|.-.++. .....+.|++ +.+.. +.+..++||..+.
T Consensus 405 ~gw~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~ 448 (978)
T COG1026 405 YGWLNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNP 448 (978)
T ss_pred cccccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCC
Confidence 222333333332 2344455544 55555 8888999987543
No 12
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-08 Score=105.55 Aligned_cols=323 Identities=13% Similarity=0.049 Sum_probs=211.5
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh------hhhcccccCceEEEe
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE------YSYDAKLAGLAWDLS 141 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e------~~y~a~~ag~~~~~~ 141 (469)
=+.|..+||+++....|.. .+|+...+.+..|...+.....+++.+...|+--+... +.+-...-|.+.+.+
T Consensus 24 y~~I~LpNGl~~LlisDP~--a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~NA~ 101 (937)
T COG1025 24 YRAIKLPNGLRALLVSDPQ--ADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNAS 101 (937)
T ss_pred eeEEECCCCceEEEecCCC--CCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCccccc
Confidence 4568899999999999996 68999999999887543334579999999999865432 223334557777777
Q ss_pred eeCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-CCCH-
Q psy8002 142 NTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-AWSK- 219 (469)
Q Consensus 142 ~~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~~~~- 219 (469)
...+...+.+.--++.++..|+.+++.+.+| -++++..++++..+-.++..... +-..........++-+. +++.
T Consensus 102 T~~~~T~fyFeV~~~al~~ALDrFa~ff~~P--Lf~~e~~dRE~~AV~sE~~~~~~-~D~~R~~~~~~~~~np~HP~srF 178 (937)
T COG1025 102 TAGERTAFYFEVENDALEGALDRFADFFIEP--LFNKEALDRERNAVNSEFTMNLT-SDGWRMYQVQALTANPGHPLSKF 178 (937)
T ss_pred cCCCceeEEEEecHHHHHHHHHHHHHHHhcc--ccChHHHHHHHHHHHHHHhcCcC-chHHHHHHHHHhhcCCCCCcccc
Confidence 6677777777778999999999999999999 99999999999999999988443 33344444343333322 2222
Q ss_pred -HHHHHHccC----CCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecC
Q psy8002 220 -TELLESLDG----ITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIP 294 (469)
Q Consensus 220 -~~~~~~l~~----it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 294 (469)
.|.+++|.. ...+++.+|++++|++.+|.++|.|+-+.+++.+++.++++.++.+....|.. +.+..-...
T Consensus 179 s~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~----p~p~~~d~~ 254 (937)
T COG1025 179 STGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPI----PVPVVTDEQ 254 (937)
T ss_pred CCCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCC----CCCCCChHH
Confidence 345666665 56799999999999999999999999999999999999998887653211111 011000111
Q ss_pred CCCceEEeccCCCCCCeEEEEEEecCCcChHh-HHHHHHHhhccCC----Ccc---cccccCcEEEeeeeecCCeee-EE
Q psy8002 295 EKSNLVYETQNAVHKSSCIEAYYQCGVQELRD-NVLLELFYPIPDE----HTH---YQEQLGYIVVSGIRKSSGVQG-LR 365 (469)
Q Consensus 295 ~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~-~~~~~ll~~il~~----~~f---tk~qLgY~V~s~~~~~~~~~~-~~ 365 (469)
.+....+ . +..+-..+.++|.++..+..- .-....++++++. .+- -++||+-.+.++.....+-.| +.
T Consensus 255 t~~ii~i-~--p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~~~n~~~f~ 331 (937)
T COG1025 255 TGKIIHI-V--PAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPISGNYGVFA 331 (937)
T ss_pred hCceEEe-c--cCCCCceEEEEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccccccCCcceEE
Confidence 1222211 1 222344577788876432211 1123444455542 222 889999888888776664333 44
Q ss_pred EEE---ecCC-ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy8002 366 IIV---QSDK-HPLFVDSRIEAFLAQMKDLISNMPDEEFQSHK 404 (469)
Q Consensus 366 ~~v---qs~~-~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k 404 (469)
+.+ +.+- ..+.+...+-.+++-+.. +++..-.|+...
T Consensus 332 is~~LT~~Gl~~~~~VI~~~F~yl~~l~~--~~~~~~~f~Elq 372 (937)
T COG1025 332 ISYELTDKGLAHYDRVIALTFQYLNLLRE--KGIPKYTFDELQ 372 (937)
T ss_pred EEeehhhcchhhHHHHHHHHHHHHHHHHh--ccchhhHHHHHH
Confidence 432 2222 555555555555554443 455555555543
No 13
>PTZ00432 falcilysin; Provisional
Probab=99.19 E-value=3.9e-08 Score=108.52 Aligned_cols=372 Identities=14% Similarity=0.092 Sum_probs=214.3
Q ss_pred CCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-hhhhhhhc-------ccccCceEEEeeeC-
Q psy8002 74 SPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKD-ALNEYSYD-------AKLAGLAWDLSNTK- 144 (469)
Q Consensus 74 ~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~-~l~e~~y~-------a~~ag~~~~~~~~~- 144 (469)
.+++.+++.+-.+ ...+++.+.|..+.. +.+..-...|++.++.. +.....|. ....|++++.....
T Consensus 666 ~~~~~~~~~~~~T--nGi~y~~~~fdl~~l--~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~ 741 (1119)
T PTZ00432 666 GGSVTVLVHPIES--RGILYLDFAFSLDSL--TVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSE 741 (1119)
T ss_pred CCCcceEEEecCC--CCeEEEEEEecCCCC--CHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecc
Confidence 4566766654222 224566666655543 44556677788777765 22223332 23456666544322
Q ss_pred -------------cceEEEEeecCccHHHHHHHHHHHHccCCCCCChHH-HHHHHHHHHHHhccccccChHHHHHHHHHH
Q psy8002 145 -------------YGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKR-YEIIKEQYYRGLKNFEAEQPYQHAIYSISL 210 (469)
Q Consensus 145 -------------~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~-f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~ 210 (469)
..+.+++.+..++++.+++.+.+.+.+. .|+..+ +..+-++++..+.+...++....|...+..
T Consensus 742 ~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~--~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s 819 (1119)
T PTZ00432 742 TNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDA--DFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKS 819 (1119)
T ss_pred ccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 2488889999999999999999999999 897643 666666677777664444555555544433
Q ss_pred hccCC-----CCC---HHHHHHHcc-C---CC----HHHHHHHHHHHHHhHhhheeeecCCCh-HHHHHHHHHHHHHHhc
Q psy8002 211 CLFER-----AWS---KTELLESLD-G---IT----REKLVEFSHDLLSKMFIEALIHGNANK-QVGLSIVKMLEEKLQT 273 (469)
Q Consensus 211 ~l~~~-----~~~---~~~~~~~l~-~---it----~edl~~f~~~~~~~~~~~~lv~Gn~~~-~~a~~l~~~~~~~l~~ 273 (469)
-+... .+. ....+..+. . -. .+.|...++.+|+..++.+.|+|+.+. +.+.+.+..+.+.++.
T Consensus 820 ~~S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~ 899 (1119)
T PTZ00432 820 KFSVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSS 899 (1119)
T ss_pred cCCHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 22211 111 112222221 1 11 234566777778888999999999854 3333433444444431
Q ss_pred cccCCC--CCcccccccceee---cC--CCCceEEeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccCCCcc----
Q psy8002 274 KLKAKP--LLPSQLLRFREIK---IP--EKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTH---- 342 (469)
Q Consensus 274 ~~~~~~--~~~~~~~~~~~~~---l~--~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~~~~f---- 342 (469)
.....+ ..+..+ ...... .+ .+...+ .. +...|. +......-....+....+.++.++|+...+
T Consensus 900 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~-~~--p~~V~y-v~~~~~~~~~~~~~~~~l~Vl~~~L~~~yLw~~I 974 (1119)
T PTZ00432 900 TFKENDNKSSDKVW-VKEVLDKKLMESVDKNEFI-VL--PTRVNF-VGMGGKLFDKSDKVDGSFQVIVHYLKNSYLWKTV 974 (1119)
T ss_pred cccccccccccccc-ccccccccccCCcccceEE-Ec--cCceeE-EEEecccccCCCccCHHHHHHHHHHccccchHHH
Confidence 100001 110000 000000 11 111111 11 222222 111111111233456888899999985544
Q ss_pred cccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHhhcCCCChh
Q psy8002 343 YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLIS---NMPDEEFQSHKEALSAQRLEKPKKLS 419 (469)
Q Consensus 343 tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~---~~seeef~~~k~~l~~~l~~~~~sl~ 419 (469)
-.++.+|.+++.... . +.+.|+ |-.+| .+.+.++.|.+-..-..+ .+|++++++++-+.++.+-. |.+..
T Consensus 975 R~~GGAYG~~~~~~~-~--G~~~f~--SYRDP-n~~~Tl~~f~~~~~~l~~~~~~~~~~~l~~~iig~~~~~D~-p~~p~ 1047 (1119)
T PTZ00432 975 RMSLGAYGVFADLLY-T--GHVIFM--SYADP-NFEKTLEVYKEVASALREAAETLTDKDLLRYKIGKISNIDK-PLHVD 1047 (1119)
T ss_pred cccCCccccCCccCC-C--CeEEEE--EecCC-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCC-CCChH
Confidence 555566999866543 2 334444 33465 345677777766544333 49999999999999988765 56677
Q ss_pred hHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002 420 GLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYT 464 (469)
Q Consensus 420 ~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~ 464 (469)
..+.+....++.|. ..+.+++..+.|-++|++||+++++.+...
T Consensus 1048 ~~g~~~~~~~l~g~-t~e~rq~~R~~il~~t~edi~~~a~~~~~~ 1091 (1119)
T PTZ00432 1048 ELSKLALLRIIRNE-SDEDRQKFRKDILETTKEDFYRLADLMEKS 1091 (1119)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777666666654 566778888999999999999999998864
No 14
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.17 E-value=1.7e-08 Score=104.83 Aligned_cols=395 Identities=16% Similarity=0.128 Sum_probs=221.0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCeEEecCCCee-eeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHh-
Q psy8002 46 SPNEFIATDFSLLPSDPDISPHPTILYNSPLIR-AWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDA- 123 (469)
Q Consensus 46 ~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~-lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~- 123 (469)
.-+.-+|+ +++-.......+.|......+..+ +||-..+. -..++.+.|..+.. +....-...|++.++...
T Consensus 506 ~~~~~lP~-l~~~dvp~~~~k~~l~~~~~~~~~v~~~~~~tn---~i~yl~~~~~~~~l--~~~llpyL~L~~~~l~~lg 579 (978)
T COG1026 506 EDLATLPT-LKLGDVPDPIEKTSLETEVSNEAKVLHHDLFTN---GITYLRLYFDLDML--PSELLPYLPLFAFALTNLG 579 (978)
T ss_pred hhhhhccc-cchhcCCCcccccceeeeccCCcceEEeecCCC---CeEEEEEEeecCCC--ChhhhhhHHHHHHHHHhcC
Confidence 33455553 444333222223344344444444 45555432 24666777776543 333344556666666542
Q ss_pred hhhhhhc-------ccccCceEEEeeeC---------cceEEEEeecCccHHHHHHHHHHHHccCCCCC-ChHHHHHHHH
Q psy8002 124 LNEYSYD-------AKLAGLAWDLSNTK---------YGMMLGISGYSHKQSVLLSKVLDKLADFSNHI-DPKRYEIIKE 186 (469)
Q Consensus 124 l~e~~y~-------a~~ag~~~~~~~~~---------~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~-~~~~f~~~k~ 186 (469)
.....|. ....|++.++++.. ..+.+.+..++++.+.+++.+-+.+.+. .| |.++...+.+
T Consensus 580 t~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~--~F~D~~Rlkell~ 657 (978)
T COG1026 580 TETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANT--DFHDRERLKELLE 657 (978)
T ss_pred CCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcC--CcCcHHHHHHHHH
Confidence 1122221 12335555554432 2377888888999999999999999999 88 6677777777
Q ss_pred HHHHHhccccccChHHHHHHHHHHhccCC-----CCC---HHHHHHHccC-----CC---HHHHHHHHHHHHHhHhhhee
Q psy8002 187 QYYRGLKNFEAEQPYQHAIYSISLCLFER-----AWS---KTELLESLDG-----IT---REKLVEFSHDLLSKMFIEAL 250 (469)
Q Consensus 187 ~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-----~~~---~~~~~~~l~~-----it---~edl~~f~~~~~~~~~~~~l 250 (469)
+++..+.+...+.+...|......-++.. .++ ....+.+|.+ .. .+.|+..++.++...++.++
T Consensus 658 q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~ 737 (978)
T COG1026 658 QYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIA 737 (978)
T ss_pred HHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 77777776444456555554443333321 111 1112222211 11 23556666777777777799
Q ss_pred eecCCChHHHHHHHHHHHHHHhccccC--CCCCcccccccceeecCC-CCc-eEEeccCCCCCCeEEEEEEecCCcChHh
Q psy8002 251 IHGNANKQVGLSIVKMLEEKLQTKLKA--KPLLPSQLLRFREIKIPE-KSN-LVYETQNAVHKSSCIEAYYQCGVQELRD 326 (469)
Q Consensus 251 v~Gn~~~~~a~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~-~~~-~~~~~~~~~~~ns~v~~~~q~~~~~~~~ 326 (469)
+.|+.+.... .+-+.+.+........ .+.+. ......+.. ... ++.. .+...+. ...-+-.-..++++
T Consensus 738 i~~~~~~~~~-~~e~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ii~--~p~a~~~-l~fs~~~~~y~hpd 809 (978)
T COG1026 738 IIGDIDKILD-LLENPLLKFLEHLLPGFELPTPP----KNPHLDLISSLSEATIIP--SPVAYNA-LAFSIGGLPYTHPD 809 (978)
T ss_pred EecChhhhHH-HHHHHhhhhhcccCcccccCCCC----CCcchhhhccccceEEec--cHHHHHH-HhhhccCCCCCCcc
Confidence 9999875322 2223333332210000 00000 000001101 111 1111 1111111 11111122467788
Q ss_pred HHHHHHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHc-CCCHHHHH
Q psy8002 327 NVLLELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLIS-NMPDEEFQ 401 (469)
Q Consensus 327 ~~~~~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~-~~seeef~ 401 (469)
.+.+.+++.+|+...| ..+|.+|..+++.....|+.++.. -.+|+ +.+..+.|.+.++.+.+ ++++.+++
T Consensus 810 ~~~l~vls~~L~~~~lw~~IR~~GGAYGa~as~~~~~G~f~f~s----YRDPn-~~kt~~v~~~~v~~l~s~~~~~~d~~ 884 (978)
T COG1026 810 YAALQVLSEYLGSGYLWNKIREKGGAYGASASIDANRGVFSFAS----YRDPN-ILKTYKVFRKSVKDLASGNFDERDLE 884 (978)
T ss_pred chHHHHHHHHhccchhHHHHHhhccccccccccccCCCeEEEEe----cCCCc-HHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 9999999999997767 667788999998877777665543 35553 44567777776666654 89999999
Q ss_pred HHHHHHHHHhhcCCCChhhHHH-HhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002 402 SHKEALSAQRLEKPKKLSGLSS-RFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYT 464 (469)
Q Consensus 402 ~~k~~l~~~l~~~~~sl~~~~~-~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~ 464 (469)
.++-+.++.+..+ .+...++. ++... ..+. .-+.++...++|.++|++|+.+..++|+.+
T Consensus 885 ~~ilg~i~~~d~p-~sp~~~~~~s~~~~-~sg~-~~~~~qa~re~~l~vt~~di~~~~~~yl~~ 945 (978)
T COG1026 885 EAILGIISTLDTP-ESPASEGSKSFYRD-LSGL-TDEERQAFRERLLDVTKEDIKEVMDKYLLN 945 (978)
T ss_pred HHHHHhhcccccc-cCCcceehhhHHHH-HhcC-CHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 9999999887654 33333332 22222 2222 225667888999999999999999999875
No 15
>KOG2583|consensus
Probab=99.07 E-value=6.8e-07 Score=83.47 Aligned_cols=353 Identities=14% Similarity=0.090 Sum_probs=223.2
Q ss_pred cCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccCceEEEeeeCcce
Q psy8002 73 NSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE-----YSYDAKLAGLAWDLSNTKYGM 147 (469)
Q Consensus 73 ~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~ag~~~~~~~~~~g~ 147 (469)
..||+++--+..+ .|...+.+.|+.+..+.+..+.+++.|+.........+ +....++.|..++...+.+-+
T Consensus 28 l~ngL~Vas~e~~---~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~ 104 (429)
T KOG2583|consen 28 LVNGLTVASREAP---TAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATRELI 104 (429)
T ss_pred cccceEEEeccCC---CcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeecceE
Confidence 4578887666543 68999999999999888888889988887776654443 233456778888888888899
Q ss_pred EEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHH-HHHHHHhccccccChHHHHHHHHHHhccCCC-----CCHHH
Q psy8002 148 MLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIK-EQYYRGLKNFEAEQPYQHAIYSISLCLFERA-----WSKTE 221 (469)
Q Consensus 148 ~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k-~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~-----~~~~~ 221 (469)
.+++....|.++..+..+.+.+.+| .|.+=+.+... ..+..+. ...+|+.++++.+....+.+. |.+.
T Consensus 105 ~~tvt~lrd~~~~~l~~L~~V~~~p--aFkPwEl~D~~~~ti~~~l---~~~t~~~~a~e~lH~aAfRngLgnslY~p~- 178 (429)
T KOG2583|consen 105 GLTVTFLRDDLEYYLSLLGDVLDAP--AFKPWELEDVVLATIDADL---AYQTPYTIAIEQLHAAAFRNGLGNSLYSPG- 178 (429)
T ss_pred EEEEEEecccHHHHHHHHHHhhccc--CcCchhhhhhhhhhhHHHh---hhcChHHHHHHHHHHHHHhcccCCcccCCc-
Confidence 9999999999999999999999999 99887777665 4444333 345899999999988777542 3332
Q ss_pred HHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEE
Q psy8002 222 LLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVY 301 (469)
Q Consensus 222 ~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (469)
-.+.+++.+||.+|.++.|-..++. +|-=|++-+.+..+.+++ ++-.+ ..+..+ -...+..|..
T Consensus 179 --~~vg~vss~eL~~Fa~k~fv~gn~~-lvg~nvd~~~L~~~~~~~---~~~~~-~~~~k~------a~a~~~gGe~--- 242 (429)
T KOG2583|consen 179 --YQVGSVSSSELKDFAAKHFVKGNAV-LVGVNVDHDDLKQFADEY---APIRD-GLPLKP------APAKYSGGEA--- 242 (429)
T ss_pred --ccccCccHHHHHHHHHHHhhccceE-EEecCCChHHHHHHHHHh---ccccC-CCCCCC------CCccccCCcc---
Confidence 2478999999999999999888864 344468888888888775 21111 001100 0011112221
Q ss_pred eccCCCCCCeEEEEEEecC--CcChHhHHHHHHHhhccCCCc--------c-----cccccCcEEEeeeeecCCeeeEEE
Q psy8002 302 ETQNAVHKSSCIEAYYQCG--VQELRDNVLLELFYPIPDEHT--------H-----YQEQLGYIVVSGIRKSSGVQGLRI 366 (469)
Q Consensus 302 ~~~~~~~~ns~v~~~~q~~--~~~~~~~~~~~ll~~il~~~~--------f-----tk~qLgY~V~s~~~~~~~~~~~~~ 366 (469)
+..... +-+.+.+..-| ..+.+..+...++.+.|+... + +--+-|-++.+..-++.+-+-+.+
T Consensus 243 Rk~~~g--~~~~v~vagegAAa~~~k~~~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv 320 (429)
T KOG2583|consen 243 RKDARG--NRVHVAVAGEGAAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFGV 320 (429)
T ss_pred ccccCC--ceeEEEEecCcccccchHHHHHHHHHHHHHhcccccccccchHHHHHhhccccCceeeeecccccCCceEEE
Confidence 111112 22222222222 234555555555555554222 2 112224455555544444333334
Q ss_pred EE--ecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHH
Q psy8002 367 IV--QSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEV 443 (469)
Q Consensus 367 ~v--qs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~ 443 (469)
++ |++ .+.+.+......++..+ .+++...-+.+++.+..........+.........- -...+..+
T Consensus 321 ~~~~~~~----~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss~~a~~~~~~~~a~~-------~~~~d~~i 389 (429)
T KOG2583|consen 321 YVSAQGS----QAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSSVEALELATGSQANL-------VSEPDAFI 389 (429)
T ss_pred EEEecCc----cHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcchHHHHHhhHHHhcC-------CCChHHHH
Confidence 33 432 23345555555555555 678777777777777776665554444333332111 11456789
Q ss_pred HHHhcCCHHHHHHHHHhhcC
Q psy8002 444 AYLKSVTKENVLKFYDKRNY 463 (469)
Q Consensus 444 ~~l~~lT~edv~~~~~~~~~ 463 (469)
+.|.+||..||.+..++++.
T Consensus 390 ~~id~Vt~sdV~~a~kk~~s 409 (429)
T KOG2583|consen 390 QQIDKVTASDVQKAAKKFLS 409 (429)
T ss_pred HHhccccHHHHHHHHHHhcc
Confidence 99999999999999999884
No 16
>KOG0961|consensus
Probab=98.97 E-value=8.5e-08 Score=94.76 Aligned_cols=311 Identities=13% Similarity=0.123 Sum_probs=187.0
Q ss_pred eCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHH----------HHHHHhccccccChHHHHHHHHHHhc
Q psy8002 143 TKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKE----------QYYRGLKNFEAEQPYQHAIYSISLCL 212 (469)
Q Consensus 143 ~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~----------~~~~~~~n~~~~~p~~~a~~~l~~~l 212 (469)
.....+++..| .+++-.+|-..++.+.+| .+++++|..+.- .+-.+.++ ....-........+..+
T Consensus 97 D~T~YtLStag-~dGFlklLPvy~dHiL~P--~Ltdeaf~TEVyHI~geg~d~GVVySEMq~-~es~~~~im~~~~~~~~ 172 (1022)
T KOG0961|consen 97 DHTAYTLSTAG-SDGFLKLLPVYIDHILTP--MLTDEAFATEVYHITGEGNDAGVVYSEMQD-HESEMESIMDRKTKEVI 172 (1022)
T ss_pred CcceEEeeccc-ccchHHHhHHHHHhhcCc--ccchhhhhhheeeecCCCCccceeehhhhh-hhcccchhhhhhhheee
Confidence 33445555555 466778888889999999 999999977532 33344444 23333455566667777
Q ss_pred cCC----CCCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhccccCCCCCccccccc
Q psy8002 213 FER----AWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRF 288 (469)
Q Consensus 213 ~~~----~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 288 (469)
++. .+...+..+.|..+|.|.+++|++.++.+.++-+.|+|+++.+++..+++.+.+.+..+....|. .++++
T Consensus 173 yP~~sgY~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~---~~~rP 249 (1022)
T KOG0961|consen 173 YPPFSGYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPD---HFPRP 249 (1022)
T ss_pred cCCCCCceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCC---CCCCC
Confidence 753 23455788999999999999999999999999999999999999999999888766654321111 11110
Q ss_pred -----ceeecCCCCceEEeccCCCCCCeEEEEEEecCC-cChHhHHHHHHHhhccCCC----c---c--cccccCcEEEe
Q psy8002 289 -----REIKIPEKSNLVYETQNAVHKSSCIEAYYQCGV-QELRDNVLLELFYPIPDEH----T---H--YQEQLGYIVVS 353 (469)
Q Consensus 289 -----~~~~l~~~~~~~~~~~~~~~~ns~v~~~~q~~~-~~~~~~~~~~ll~~il~~~----~---f--tk~qLgY~V~s 353 (469)
-...++......++.+..+....+|.+.|.... .+.+...++.+|...++.. | | .+.-++-.|+.
T Consensus 250 f~~tn~~~~i~e~t~~tVefp~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~assv~f 329 (1022)
T KOG0961|consen 250 FSFTNALSDIKESTVHTVEFPTDDESRGAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASSVSF 329 (1022)
T ss_pred cccccCcccCCccceeeeecCCcccccceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEecCccccceee
Confidence 011223333334454545666778888886654 3455666777777777632 2 2 45556666665
Q ss_pred eeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccc
Q psy8002 354 GIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQ 433 (469)
Q Consensus 354 ~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~ 433 (469)
...-.. ...+...+|+ +..+++...-..|++.+.+. ..++-+......+.-+-+.+. ++...+......++.++
T Consensus 330 ~~~~~v-rc~i~L~f~g-VP~EKi~~~~~k~l~~l~et-~~iDm~Rm~~~i~~t~~~yL~---nlE~n~~s~fms~ii~d 403 (1022)
T KOG0961|consen 330 HIAEGV-RCDIRLNFAG-VPVEKIDECAPKFLDKLVET-ANIDMERMGYLIDQTILNYLV---NLETNAPSDFMSHIIGD 403 (1022)
T ss_pred eeeccc-ceeEEEeecC-CcHHHhhhhhHHHHHHHHHh-cccCHHHHHHHHHHHHHHHHH---hhhcCChHHHHHHHhhh
Confidence 543221 1223333333 57788888888888766432 345544444333222222222 22222222223333334
Q ss_pred cccccch-----------HHHHHHhcCCHHHHHHHHHhhcCCCC
Q psy8002 434 YNFDRAN-----------IEVAYLKSVTKENVLKFYDKRNYTES 466 (469)
Q Consensus 434 ~~f~~~~-----------~~~~~l~~lT~edv~~~~~~~~~~~s 466 (469)
+-|+..+ ...+.|++-...|.++..++||-.+.
T Consensus 404 ~~ygnedg~~l~~~lk~l~~~~~L~~w~~kdW~~Llnk~Fven~ 447 (1022)
T KOG0961|consen 404 QLYGNEDGELLKKRLKELDFLKKLKSWPAKDWVQLLNKYFVENP 447 (1022)
T ss_pred hhccCcchhHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhccCC
Confidence 4444321 22355666777888889999987543
No 17
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.86 E-value=5.9e-08 Score=100.76 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=138.0
Q ss_pred HHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccc
Q psy8002 116 FISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNF 195 (469)
Q Consensus 116 ~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~ 195 (469)
+..++...|....-++..||.+.+++.......+.+.|.-+-++.++..++..|..+.+...... .. ...
T Consensus 469 ~~~~l~~~l~~l~~~~~~~g~~~~~~~~~~~w~l~l~g~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~------~~~- 538 (696)
T TIGR02110 469 LALALQRQLRPLLADARHAGVNGSWQATGASWQLLLNGPRSPMRAVFSVALALLALAAPMLAQPA---AN------RAS- 538 (696)
T ss_pred HHHHHHHHHHHHHHHHHhcCceeEEEEcCCeEEEEcCCCchhHHHHHHHHHHHHhCCCccccccc---cc------CCC-
Confidence 44556777888888899999999999998889999999999999999999999998721110110 00 000
Q ss_pred cccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhcc-
Q psy8002 196 EAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTK- 274 (469)
Q Consensus 196 ~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~- 274 (469)
...-|.++....+...+-.+... . .+. |....+. .+ + ..+ +......++..
T Consensus 539 ~~~i~ir~ll~~lp~~~~~~~~~----------~--~~~--~~~~~~~-----~~-----~-~~~---~~~~l~~~~~~~ 590 (696)
T TIGR02110 539 APSIPIRQLLAALPERLLKSLPA----------Q--QDD--WLAARWG-----AA-----T-QLA---QRVALQLSPGTA 590 (696)
T ss_pred CccchHHHHHHhchHhhccCccc----------c--ccc--hhhhhcc-----cc-----h-hHH---HHHHHHhCCCCC
Confidence 11112222222222222111000 0 000 1111111 11 1 112 11112222210
Q ss_pred ccCCCCCcccccccceeecCCCCceEEeccCCCCCCeEEEEEEecCCcChHhHHHHHHHhhccCCCcc----cccccCcE
Q psy8002 275 LKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTH----YQEQLGYI 350 (469)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~~ll~~il~~~~f----tk~qLgY~ 350 (469)
+...+.|+. . ..+... .. .......+++.++++.+..+..+.++..||++++..+|| .++||||.
T Consensus 591 ~~~~~~~~~-------~--~~~~~~-~~-~~~~~~e~alllf~p~~~~~~~~~aa~rlla~l~~~~f~qrlRve~qlGY~ 659 (696)
T TIGR02110 591 DLARPTPLP-------A--RLGRGW-VP-LACDGGEQALLLFCPLPTADVASEAAWRLLAQLLEPPFFQRLRVELQLGYV 659 (696)
T ss_pred ccCCCCCCC-------c--ccccce-Ee-ccCCCCCcEEEEEecCCCCCHHHHHHHHHHHHHhchhHHHHHHHhhccceE
Confidence 011111100 0 022221 12 112234678999999999999999999999999999999 99999999
Q ss_pred EEeeeeecCCeeeEEEEEecCC-ChhHHHHHHHHHH
Q psy8002 351 VVSGIRKSSGVQGLRIIVQSDK-HPLFVDSRIEAFL 385 (469)
Q Consensus 351 V~s~~~~~~~~~~~~~~vqs~~-~~~~l~~~I~~fl 385 (469)
|+|+++...|..|+.|.||||. ++..+.++|+.|+
T Consensus 660 v~~~~~~~~~~~gllf~~QSP~~~~~~l~~h~~~fl 695 (696)
T TIGR02110 660 VFCRYRRVADRDGLLFALQSPDASARELLQHIKRFL 695 (696)
T ss_pred EEEeeEEcCCcceeEEEEeCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999998 9999999999997
No 18
>KOG0959|consensus
Probab=98.80 E-value=2.5e-06 Score=90.22 Aligned_cols=202 Identities=13% Similarity=0.025 Sum_probs=151.9
Q ss_pred CeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh----hhhccccc--CceEEEe
Q psy8002 68 PTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE----YSYDAKLA--GLAWDLS 141 (469)
Q Consensus 68 P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e----~~y~a~~a--g~~~~~~ 141 (469)
=..+..+||+++.+..|.. +-++...+.+..|...+.....++|.+...|+-.+... -.|...++ |.+.+..
T Consensus 28 yr~~~L~Ngl~alLisDp~--tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~ 105 (974)
T KOG0959|consen 28 YRGIELTNGLRALLISDPK--TDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAY 105 (974)
T ss_pred eeEEEecCCceEEEecCCC--CCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccc
Confidence 3567889999999999975 45678888888887766667789999999999876532 23333333 4444555
Q ss_pred eeCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-CCCH-
Q psy8002 142 NTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-AWSK- 219 (469)
Q Consensus 142 ~~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-~~~~- 219 (469)
...+.....+.--.++++.+|+.+++.+..| .++++.-++++..+..++++ ...+-..........+..+. +++.
T Consensus 106 T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~P--lf~~~a~eREv~AVdSE~~~-nl~~D~wr~~ql~~~l~~~~hp~~kF 182 (974)
T KOG0959|consen 106 TDSEHTNYYFDVQHDHLEGALDRFAQFFSDP--LFNKSATEREVGAVDSEHEK-NLNSDGWRFDQLLRSLSNPGHPYSKF 182 (974)
T ss_pred cccccceEEEecchHHHHHHHHHHHHHhhCc--ccChHHHHHHHHHHHHHHHh-ccCcchhHHHHHHHHhcCCCCcchhc
Confidence 4444444555556778999999999999999 99999999999999999988 44444455555555544432 2332
Q ss_pred -HHHHHHccCCC-----HHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhcc
Q psy8002 220 -TELLESLDGIT-----REKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTK 274 (469)
Q Consensus 220 -~~~~~~l~~it-----~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~ 274 (469)
.|..++|.... .+.+..|++++|+.+.|.+.|+|+-+.+....++...++.+++.
T Consensus 183 ~tGN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~ 243 (974)
T KOG0959|consen 183 STGNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNK 243 (974)
T ss_pred cccchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHccccccc
Confidence 45677787777 89999999999999999999999999988888887777666554
No 19
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.76 E-value=6.3e-08 Score=82.02 Aligned_cols=132 Identities=18% Similarity=0.230 Sum_probs=112.3
Q ss_pred eeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh-----hhhcccccCceEEEeeeCcceEEEEe
Q psy8002 78 RAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE-----YSYDAKLAGLAWDLSNTKYGMMLGIS 152 (469)
Q Consensus 78 ~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e-----~~y~a~~ag~~~~~~~~~~g~~i~~~ 152 (469)
+|+..+|+. .|.+.+.+.|..+...+++...+++.|+..++..+... +.-..+..|.+++...+.+.+.+.++
T Consensus 1 ~V~~~~~~~--~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~ 78 (149)
T PF00675_consen 1 KVVLVEDPG--SPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSAS 78 (149)
T ss_dssp EEEEEESTT--SSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEE
T ss_pred CEEEEEcCC--CCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEE
Confidence 467777654 68999999999988888888899999999998776322 22223457889999999999999999
Q ss_pred ecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccC
Q psy8002 153 GYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFE 214 (469)
Q Consensus 153 G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~ 214 (469)
+.++.++.+|+.+.+.+.+| .++++.|+++|..++.+++. ..++|...+...+...++.
T Consensus 79 ~~~~~~~~~l~~l~~~~~~P--~f~~~~~~~~r~~~~~ei~~-~~~~~~~~~~~~l~~~~f~ 137 (149)
T PF00675_consen 79 VLSEDLEKALELLADMLFNP--SFDEEEFEREREQILQEIEE-IKENPQELAFEKLHSAAFR 137 (149)
T ss_dssp EEGGGHHHHHHHHHHHHHSB--GGCHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHT
T ss_pred EecccchhHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999 99999999999999999998 6778888899988888875
No 20
>KOG2019|consensus
Probab=98.73 E-value=4.6e-06 Score=83.03 Aligned_cols=374 Identities=10% Similarity=0.064 Sum_probs=209.2
Q ss_pred eEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCC--H-----------HHHHHHHHHHHHHHHhhhhhhhcccccC
Q psy8002 69 TILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLD--P-----------ECTNMTHLFISLFKDALNEYSYDAKLAG 135 (469)
Q Consensus 69 ~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~--~-----------~~~~l~~l~~~ll~~~l~e~~y~a~~ag 135 (469)
.+.+..-|.++.+.-... +...+++.|++|....+ | +.+-..+=+..|++.+|.-+.-. .-+
T Consensus 55 ~lkH~~Tgae~lhl~reD---~N~vFsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNA--fT~ 129 (998)
T KOG2019|consen 55 LLKHKKTGAEVLHLDRED---ENNVFSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNA--FTA 129 (998)
T ss_pred eeeecCCCceeEeeccCC---CCceeEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhh--ccC
Confidence 345667788888776443 45678899998874321 1 11222333566677665433211 111
Q ss_pred ceEEEeeeCcceEEEEeecC-ccHHHHHHHHHHHHccCCCCCChHHHHHH------------------HHHHHHHhcccc
Q psy8002 136 LAWDLSNTKYGMMLGISGYS-HKQSVLLSKVLDKLADFSNHIDPKRYEII------------------KEQYYRGLKNFE 196 (469)
Q Consensus 136 ~~~~~~~~~~g~~i~~~G~s-~~l~~ll~~i~~~l~~~~~~~~~~~f~~~------------------k~~~~~~~~n~~ 196 (469)
-++.+++- +.-+ ..+..|....+|....| ...+..|.++ |-.+-.+.+- .
T Consensus 130 pD~T~yPf--------attN~kDf~NL~dVYLDAtffP--klr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG-~ 198 (998)
T KOG2019|consen 130 PDYTFYPF--------ATTNTKDFYNLRDVYLDATFFP--KLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKG-Q 198 (998)
T ss_pred CCcceeec--------ccCChHHHHHHHHHhhhcccch--HHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccc-c
Confidence 23333331 1111 12444555555555555 4444444332 2334445555 4
Q ss_pred ccChHHHHHHHHHHhccCC-CCCH--HHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhc
Q psy8002 197 AEQPYQHAIYSISLCLFER-AWSK--TELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQT 273 (469)
Q Consensus 197 ~~~p~~~a~~~l~~~l~~~-~~~~--~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~ 273 (469)
..+|.......+.+.+++. .|.. .+---.|..++++++.+|++++|.|.++.++-+||+..++....++.-+..+..
T Consensus 199 ~S~~~~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk 278 (998)
T KOG2019|consen 199 YSDPDYIFGMLFQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSK 278 (998)
T ss_pred ccChhHHHHHHHHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhccccc
Confidence 5677777777777777753 3443 344567899999999999999999999999999999988877766643322222
Q ss_pred cccCCCCC-cccccccceeec--CCCCceEEeccCCCCCCeEEEEEEecC-CcChHhHHHHHHHhhcc----CCCcc---
Q psy8002 274 KLKAKPLL-PSQLLRFREIKI--PEKSNLVYETQNAVHKSSCIEAYYQCG-VQELRDNVLLELFYPIP----DEHTH--- 342 (469)
Q Consensus 274 ~~~~~~~~-~~~~~~~~~~~l--~~~~~~~~~~~~~~~~ns~v~~~~q~~-~~~~~~~~~~~ll~~il----~~~~f--- 342 (469)
.....+.+ +..+..++.+.. |.+. . ..+. .+..+.+.|-.+ +.+..+..++.+|.++| +||++
T Consensus 279 ~~~s~kv~~qk~f~kp~rvve~~p~d~-~----~~p~-Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~L 352 (998)
T KOG2019|consen 279 RELSSKVTFQKLFDKPRRVVEKGPADP-G----DLPK-KQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKAL 352 (998)
T ss_pred ccccCccccccccccCceeeeecCCCC-C----CCcc-ceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 11111111 011111111111 1111 0 0111 233334444444 35567778888888876 47788
Q ss_pred cccccC--cEEEeeeeecCCeeeEEEEEecCC--ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCCh
Q psy8002 343 YQEQLG--YIVVSGIRKSSGVQGLRIIVQSDK--HPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKL 418 (469)
Q Consensus 343 tk~qLg--Y~V~s~~~~~~~~~~~~~~vqs~~--~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl 418 (469)
.+.+|| ..|.+++......+.|.+-+|.-. +.+.+++.|...++++.+ .+++.+.+++....+.-++..+....
T Consensus 353 iESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae--~gfd~drieAil~qiEislk~qst~f 430 (998)
T KOG2019|consen 353 IESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAE--TGFDNDRIEAILHQIEISLKHQSTGF 430 (998)
T ss_pred HHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHhhhhhhccccch
Confidence 889999 889999887777777777777644 777777777777766654 67887777777666665555543331
Q ss_pred hh-HHHHhHHhhhccccccccc------hHHHHHHhcCCHHHHHHHHHhhcCCCC
Q psy8002 419 SG-LSSRFWLEITTQQYNFDRA------NIEVAYLKSVTKENVLKFYDKRNYTES 466 (469)
Q Consensus 419 ~~-~~~~~w~~i~~~~~~f~~~------~~~~~~l~~lT~edv~~~~~~~~~~~s 466 (469)
.- .+...-..+.+..-.|+.. +.....++.=++.=++...++||..+.
T Consensus 431 GL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn~ 485 (998)
T KOG2019|consen 431 GLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNNP 485 (998)
T ss_pred hHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcCC
Confidence 11 1111111112222234432 222233333345557778888886543
No 21
>KOG0961|consensus
Probab=98.59 E-value=2.5e-06 Score=84.67 Aligned_cols=308 Identities=14% Similarity=0.090 Sum_probs=174.8
Q ss_pred eEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCC-----CCCH--
Q psy8002 147 MMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFER-----AWSK-- 219 (469)
Q Consensus 147 ~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~-----~~~~-- 219 (469)
+.+.+..-.++.+.+.+-+-..+... .+|+++....-++++.++.. .+.+.-..+..+....+|+. .+..
T Consensus 636 vn~~Ikv~a~~Y~~~v~Wi~~~l~~~--VfD~~Ri~~~~~~~l~~i~~-~KRdg~~vlss~~~~~lY~~~slk~s~d~L~ 712 (1022)
T KOG0961|consen 636 VNLRIKVGADKYPLLVKWIQIFLQGV--VFDPSRIHQCAQKLLGEIRD-RKRDGCTVLSSAVASMLYGKNSLKISFDELV 712 (1022)
T ss_pred eeEEEEEccCCcchhHHHHHHHhhhh--ccCHHHHHHHHHHHHhhhhh-hhcCccEehHHHHHHHHhcccchhhcccHHH
Confidence 77888878899999999998899988 89999999999999888766 33333334444455555532 1221
Q ss_pred -HHHHHHc----cCC---CHHHHHHHHHHHHHhHhhheeeecCCChH-HHHHHHHHHHHHHhccccCC-CCC-ccccccc
Q psy8002 220 -TELLESL----DGI---TREKLVEFSHDLLSKMFIEALIHGNANKQ-VGLSIVKMLEEKLQTKLKAK-PLL-PSQLLRF 288 (469)
Q Consensus 220 -~~~~~~l----~~i---t~edl~~f~~~~~~~~~~~~lv~Gn~~~~-~a~~l~~~~~~~l~~~~~~~-~~~-~~~~~~~ 288 (469)
+..++.| .+= =++.+.....-.+..+.+.+.|+||+++- +.+.-...+.+....+ ++. .+. +.+....
T Consensus 713 ~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~-nP~~~f~~tf~~~~~ 791 (1022)
T KOG0961|consen 713 LEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADPRFG-NPGHQFSATFEAGEN 791 (1022)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCcccC-CchhhcccccccCcc
Confidence 1222222 111 01222222221233457889999999862 2222222222211110 000 000 0000111
Q ss_pred ceeecCCCCc-eEEeccCCCCCCeEEEEEEec-CCcChHhHHHHHHHhhccC---CCcc---cccccCcEEEeeeeecCC
Q psy8002 289 REIKIPEKSN-LVYETQNAVHKSSCIEAYYQC-GVQELRDNVLLELFYPIPD---EHTH---YQEQLGYIVVSGIRKSSG 360 (469)
Q Consensus 289 ~~~~l~~~~~-~~~~~~~~~~~ns~v~~~~q~-~~~~~~~~~~~~ll~~il~---~~~f---tk~qLgY~V~s~~~~~~~ 360 (469)
....+..+.. +++-. +....+-++...+. .....++.+...|+++.|+ +||. .-.||+|..........+
T Consensus 792 ~s~e~gsssk~~~I~~--p~sESs~l~~sip~~~~w~dpel~~~~l~~~YL~~~eGPfW~~IRG~GLAYGanm~~~~d~~ 869 (1022)
T KOG0961|consen 792 VSLELGSSSKELLIGV--PGSESSFLYQSIPLDANWNDPELIPAMLFGQYLSQCEGPFWRAIRGDGLAYGANMFVKPDRK 869 (1022)
T ss_pred cceeccCCcceeEecC--CCccccceeeecccccccCCcchhHHHHHHHHHHhcccchhhhhcccchhccceeEEeccCC
Confidence 1222322322 23322 22222222222222 1245567778888888765 7777 556678998888888888
Q ss_pred eeeEEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCC-CChhhHHHHhHHh-hhcccccccc
Q psy8002 361 VQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKP-KKLSGLSSRFWLE-ITTQQYNFDR 438 (469)
Q Consensus 361 ~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~-~sl~~~~~~~w~~-i~~~~~~f~~ 438 (469)
..++.++ -..++...-++-...++.+..--.++++.+|+.+|.+.+..+.... ......++.+-.+ +....-+|
T Consensus 870 ~~~~~iy--r~ad~~kaye~~rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~~Eng~~~~a~~~~~l~~~~q~~~~f-- 945 (1022)
T KOG0961|consen 870 QITLSIY--RCADPAKAYERTRDIVRKIVSGSGEISKAEFEGAKRSTVFEMMKRENGTVSGAAKISILNNFRQTPHPF-- 945 (1022)
T ss_pred EEEEEee--cCCcHHHHHHHHHHHHHHHhcCceeecHHHhccchHHHHHHHHHHhccceechHHHHHHHHHHhcCCcc--
Confidence 8887776 2235555555555555444332236899999999999988877654 3344444444332 33333344
Q ss_pred chHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002 439 ANIEVAYLKSVTKENVLKFYDKRNYT 464 (469)
Q Consensus 439 ~~~~~~~l~~lT~edv~~~~~~~~~~ 464 (469)
...+.++|.+||.+|+.+..+.|+.+
T Consensus 946 n~~~leri~nvT~~~~~~~~~~y~~~ 971 (1022)
T KOG0961|consen 946 NIDLLERIWNVTSEEMVKIGGPYLAR 971 (1022)
T ss_pred cHHHHHHHHHhhHHHHHHhcccceeh
Confidence 45788999999999999998887753
No 22
>KOG2019|consensus
Probab=98.08 E-value=0.0037 Score=63.01 Aligned_cols=394 Identities=13% Similarity=0.061 Sum_probs=214.1
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCeEEecCCCeee-eeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-
Q psy8002 45 PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRA-WHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKD- 122 (469)
Q Consensus 45 P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~l-w~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~- 122 (469)
|..=-++|+ +.+-.......-.|.-+.+.+|+++ |+-.++. ..++++...+...-.-+..-+.-|+|..+.+
T Consensus 539 p~dlsClPt-L~vsDIp~~~~~~~~~v~dingvkv~~~dl~tn-----gi~Y~r~~~~l~~~p~eL~PylPlfc~sll~l 612 (998)
T KOG2019|consen 539 PEDLSCLPT-LNVSDIPKTIPYTKLEVGDINGVKVQRCDLFTN-----GITYTRVVFDLNSLPEELLPYLPLFCQSLLNL 612 (998)
T ss_pred ccccccccc-cccccCCCCCCccceeeeeccCceeEEeeccCC-----ceEEEEEeeccccCcHHhhcchHHHHHHHHhc
Confidence 766666774 3333222222223566778888765 4444332 3444444444332222233455566665544
Q ss_pred hhhhhh-------hcccccCceEEEeeeC-cc-----eEEEEeecC--ccHHHHHHHHHHHHccCCCCC-ChHHHHHHHH
Q psy8002 123 ALNEYS-------YDAKLAGLAWDLSNTK-YG-----MMLGISGYS--HKQSVLLSKVLDKLADFSNHI-DPKRYEIIKE 186 (469)
Q Consensus 123 ~l~e~~-------y~a~~ag~~~~~~~~~-~g-----~~i~~~G~s--~~l~~ll~~i~~~l~~~~~~~-~~~~f~~~k~ 186 (469)
+...+. ....-.|++.+..... +| ..|.++|+. .+.+.+++.+...+.+. .+ +++.|.....
T Consensus 613 Gt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~--~f~n~dkfkvlvk 690 (998)
T KOG2019|consen 613 GTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQET--CFTNQDKFKVLVK 690 (998)
T ss_pred CCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhccc--CcccHHHHHHHHH
Confidence 322221 1223346666543322 12 335555554 56899999999999988 66 5678999888
Q ss_pred HHHHHhccccccChHHHHHHHHHHhccCCCCCHH--------HHHHHccCCC-------HHHHHHHHHHHHHhHhhheee
Q psy8002 187 QYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKT--------ELLESLDGIT-------REKLVEFSHDLLSKMFIEALI 251 (469)
Q Consensus 187 ~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~--------~~~~~l~~it-------~edl~~f~~~~~~~~~~~~lv 251 (469)
....+..|..-+.....|.......+....|-.+ +.+..|+... .+.+.+..+.++..+++.+.|
T Consensus 691 ~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~i 770 (998)
T KOG2019|consen 691 QSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNI 770 (998)
T ss_pred HHHHHhhccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 8888888844444444555544444544444322 2344444433 233444555566777888877
Q ss_pred ecCCC-hHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEEeccCCCCCCeEEEEEEecCCcChHhHHHH
Q psy8002 252 HGNAN-KQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLL 330 (469)
Q Consensus 252 ~Gn~~-~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ns~v~~~~q~~~~~~~~~~~~ 330 (469)
..+-. ...+.+.++++.+.++.. .|.....-.. ..+|.+...++... +.-+-+.+.-...+-+.+.++-+.+
T Consensus 771 tAd~~q~~~vEkav~kFl~~lp~e---~p~g~~st~d---~r~p~~~~~i~~~~-P~fqvnyvgka~~~vpyt~~d~asl 843 (998)
T KOG2019|consen 771 TADPKQLTNVEKAVEKFLDSLPRE---NPSGSKSTWD---ARLPLRSEAIRVVI-PTFQVNYVGKAGLGVPYTHPDGASL 843 (998)
T ss_pred ecCcccchhHHHHHHHHHHhcccc---CCCCCccCcc---ccCCCCceeEEEec-cccchhhhhhhcccccCCCCCCcHH
Confidence 76543 344556666666666521 1111100000 11222222211101 1100001111111123566777888
Q ss_pred HHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy8002 331 ELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLI-SNMPDEEFQSHKE 405 (469)
Q Consensus 331 ~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l-~~~seeef~~~k~ 405 (469)
.+++.+|+.... .+++=+|.-+|++....|+..+. |-.+|+-+. .++.|-..-.-.. ..++++++..+|-
T Consensus 844 ~vlS~~lt~k~Lh~evRekGGAYGgg~s~~sh~GvfSf~----SYRDpn~lk-tL~~f~~tgd~~~~~~~~~~dldeAkl 918 (998)
T KOG2019|consen 844 QVLSKLLTNKWLHDEVREKGGAYGGGCSYSSHSGVFSFY----SYRDPNPLK-TLDIFDGTGDFLRGLDVDQQDLDEAKL 918 (998)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccCCccccccccceEEEE----eccCCchhh-HHHhhcchhhhhhcCCccccchhhhhh
Confidence 889888886655 45555699999988777765543 334665433 4566654432222 3589999999998
Q ss_pred HHHHHhhcCCCChhhHH-HHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002 406 ALSAQRLEKPKKLSGLS-SRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYT 464 (469)
Q Consensus 406 ~l~~~l~~~~~sl~~~~-~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~ 464 (469)
+.++..-.+ .....+. .++ +.| ..-+.++...+.|=.++..|+.+++++|+..
T Consensus 919 ~~f~~VDap-~~P~~kG~~~f----l~g-vtDemkQarREqll~vSl~d~~~vae~yl~~ 972 (998)
T KOG2019|consen 919 GTFGDVDAP-QLPDAKGLLRF----LLG-VTDEMKQARREQLLAVSLKDFKAVAEAYLGV 972 (998)
T ss_pred hhcccccCC-cCCcccchHHH----Hhc-CCHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 888866432 2222232 122 222 2234556667788899999999999999864
No 23
>KOG2067|consensus
Probab=96.91 E-value=0.0099 Score=56.29 Aligned_cols=140 Identities=11% Similarity=0.138 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcc-eEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHH
Q psy8002 110 TNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYG-MMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQY 188 (469)
Q Consensus 110 ~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g-~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~ 188 (469)
-+.+.||..+++.+- ..|.+ ..|+-+.++.| +.|..+..-+..+..++.+...|.+....+++++.+++|.++
T Consensus 305 GMySrLY~~vLNry~--wv~sc----tAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~ql 378 (472)
T KOG2067|consen 305 GMYSRLYLNVLNRYH--WVYSC----TAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQL 378 (472)
T ss_pred chHHHHHHHHHhhhH--HHHHh----hhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344555555555421 22322 22344455666 677777777788889999988888764468999999999999
Q ss_pred HHHhccccccChHHHHHHHHHHhcc-CCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCCh
Q psy8002 189 YRGLKNFEAEQPYQHAIYSISLCLF-ERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANK 257 (469)
Q Consensus 189 ~~~~~n~~~~~p~~~a~~~l~~~l~-~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~ 257 (469)
...+-......|. .+.+.-++++. +..-++++.++.|+++|.+|+.++..+.+.. +..+.-.||+..
T Consensus 379 kS~LlMNLESR~V-~~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~~~ 446 (472)
T KOG2067|consen 379 KSMLLMNLESRPV-AFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDGTG 446 (472)
T ss_pred HHHHHhcccccch-hHHHHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCcccC
Confidence 9887442555663 34455556554 5556889999999999999999999998854 344666777753
No 24
>KOG0960|consensus
Probab=96.64 E-value=0.041 Score=52.19 Aligned_cols=175 Identities=15% Similarity=0.111 Sum_probs=114.7
Q ss_pred CCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHh-------------hhhhhhcccccC--ceEE
Q psy8002 75 PLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDA-------------LNEYSYDAKLAG--LAWD 139 (469)
Q Consensus 75 ~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~-------------l~e~~y~a~~ag--~~~~ 139 (469)
-|.++-++-|+ +|++++.+.+-..+. .+|...++ .+...++... |....-+-.++. .+|+
T Consensus 257 tgsEvR~rdd~---lP~a~~AiAVEG~~w-~~pD~~~l-~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfqsFn 331 (467)
T KOG0960|consen 257 TGSEVRVRDDD---LPLAHIAIAVEGVSW-AHPDYFAL-MVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQSFN 331 (467)
T ss_pred cCceeeecCCC---CchhheeeeEecCCc-CCccHHHH-HHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHhhhh
Confidence 46777777765 799999999987764 34443222 2222233210 111111112221 3677
Q ss_pred EeeeCcc-eEEEEee-cCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhcc-ccccChHHHHHHHHHHhcc-CC
Q psy8002 140 LSNTKYG-MMLGISG-YSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKN-FEAEQPYQHAIYSISLCLF-ER 215 (469)
Q Consensus 140 ~~~~~~g-~~i~~~G-~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n-~~~~~p~~~a~~~l~~~l~-~~ 215 (469)
++..+.| +.+.+-. =...+..++..++.........+++.+.+++|.++...+-. ..-..| .+.+.-++++. +.
T Consensus 332 t~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttp--i~ediGrqlL~~Gr 409 (467)
T KOG0960|consen 332 TSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTP--IAEDIGRQLLTYGR 409 (467)
T ss_pred cccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHhhcCC
Confidence 7776666 4444444 22345556666655555443368999999999999988744 233345 47777777775 56
Q ss_pred CCCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCC
Q psy8002 216 AWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 216 ~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~ 256 (469)
.-++.+..+-|++||..+++++..+++-...+-+..+|.+.
T Consensus 410 ri~l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie 450 (467)
T KOG0960|consen 410 RIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIE 450 (467)
T ss_pred cCChHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccc
Confidence 67889999999999999999999999988888899999875
No 25
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=95.83 E-value=0.075 Score=53.55 Aligned_cols=99 Identities=18% Similarity=0.194 Sum_probs=78.0
Q ss_pred ccHHHHHHHHHHHHccCCCC---CChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccC-CCCCHHHHHHHccCCCH
Q psy8002 156 HKQSVLLSKVLDKLADFSNH---IDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFE-RAWSKTELLESLDGITR 231 (469)
Q Consensus 156 ~~l~~ll~~i~~~l~~~~~~---~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~-~~~~~~~~~~~l~~it~ 231 (469)
++....+..+++.+..- . +++++++..|..+...+-. ..++|...+.......+.. ..-+..+..+.|+++|.
T Consensus 331 ~~~~~~i~~~~~~~~~~--~~~~~t~~~~~~~k~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~ 407 (438)
T COG0612 331 EKTAELVEEILKALKKG--LKGPFTEEELDAAKQLLIGLLLL-SLDSPSSIAELLGQYLLLGGSLITLEELLERIEAVTL 407 (438)
T ss_pred hhHHHHHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHHhhh-ccCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHhcCH
Confidence 33455555555555543 3 8899999999988888877 6788988888777777664 44577889999999999
Q ss_pred HHHHHHHHHHHHhHhhheeeecCCCh
Q psy8002 232 EKLVEFSHDLLSKMFIEALIHGNANK 257 (469)
Q Consensus 232 edl~~f~~~~~~~~~~~~lv~Gn~~~ 257 (469)
+|+.++.++++.+....+.+.|+...
T Consensus 408 ~dv~~~a~~~~~~~~~~~~~~~p~~~ 433 (438)
T COG0612 408 EDVNAVAKKLLAPENLTIVVLGPEKA 433 (438)
T ss_pred HHHHHHHHHhcCCCCcEEEEEccccc
Confidence 99999999999998889999998653
No 26
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=95.58 E-value=0.038 Score=50.91 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=78.6
Q ss_pred HhhcCC-CCCCCCCCCCCccCCCCCCCCCCCeEEecCCCeeeeeecCCcccccceEEEEEEECCCCCCCHHHHHHHHHHH
Q psy8002 39 MKKWTN-PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFI 117 (469)
Q Consensus 39 ~~~~~~-P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~ 117 (469)
++.|++ |..-.-||+ +++-..+......|......+|+.+++.+-.+ ...+++++.|..+... ++..-...|++
T Consensus 41 L~~~Q~~~d~~~~LP~-L~~~Di~~~~~~~~~~~~~~~~~~v~~~~~~T--nGI~Y~~l~fdl~~l~--~e~l~yl~Ll~ 115 (248)
T PF08367_consen 41 LKERQEAEDDLATLPT-LSLSDIPREIEKIPLEVEKLGGIPVLFHEQPT--NGIVYVRLYFDLSDLP--EEDLPYLPLLT 115 (248)
T ss_dssp HHHHHCS--HHTTS-----GGGS-SS------EECCCTTCEEEEEE-----TTEEEEEEEEE-TTS---CCCHCCHHHHH
T ss_pred HHHHhCChhhHHHHcc-ccHHhcCCCCCCCCceeeecCCccEEEEEcCC--CCeEEEEEEecCCCCC--HHHHHhHHHHH
Confidence 455655 553334552 33333333334456666666788888776444 3467777777776543 33334556666
Q ss_pred HHHHH-hhhhhhhc-------ccccCceEEEeeeC---------cceEEEEeecCccHHHHHHHHHHHHccCCCCCChH-
Q psy8002 118 SLFKD-ALNEYSYD-------AKLAGLAWDLSNTK---------YGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPK- 179 (469)
Q Consensus 118 ~ll~~-~l~e~~y~-------a~~ag~~~~~~~~~---------~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~- 179 (469)
.++.. +.....|. ....|+++++.... .++.++..++.++++.+++++.+.|.++ .|+..
T Consensus 116 ~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~--~f~d~~ 193 (248)
T PF08367_consen 116 DLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTET--DFDDKE 193 (248)
T ss_dssp HHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB---TT-HH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhcc--CCCcHH
Confidence 66644 22222222 23456766654321 2488899999999999999999999999 88765
Q ss_pred HHHHHHHHHHHHhcc
Q psy8002 180 RYEIIKEQYYRGLKN 194 (469)
Q Consensus 180 ~f~~~k~~~~~~~~n 194 (469)
++..+-.+....+++
T Consensus 194 rl~~ll~~~~s~~~~ 208 (248)
T PF08367_consen 194 RLKELLKELKSDMES 208 (248)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444544
No 27
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=91.81 E-value=0.94 Score=38.78 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=28.5
Q ss_pred eEEEEeecCccHHHHHHHHHHHHccCCC-CCChHHHHHHHHHH
Q psy8002 147 MMLGISGYSHKQSVLLSKVLDKLADFSN-HIDPKRYEIIKEQY 188 (469)
Q Consensus 147 ~~i~~~G~s~~l~~ll~~i~~~l~~~~~-~~~~~~f~~~k~~~ 188 (469)
+.+.+.+-.++...+++.+.+.+..... .+++++|+++|..+
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 142 FSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7777777777776666666555554311 59999999999865
No 28
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=71.71 E-value=7.4 Score=22.67 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=14.0
Q ss_pred cCCCHHHHHHHHHHHH
Q psy8002 393 SNMPDEEFQSHKEALS 408 (469)
Q Consensus 393 ~~~seeef~~~k~~l~ 408 (469)
..+|++||++.|+.++
T Consensus 15 G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 15 GEISEEEYEQKKARLL 30 (31)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5789999999998875
No 29
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=53.27 E-value=1.3e+02 Score=24.72 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=64.2
Q ss_pred CCCCCeEEEEEEecCCcCh-H-hHHHHHHHhhccCCC--cc-------cccccCcEEEeeeeecCCeeeEEEEEecCCCh
Q psy8002 306 AVHKSSCIEAYYQCGVQEL-R-DNVLLELFYPIPDEH--TH-------YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHP 374 (469)
Q Consensus 306 ~~~~ns~v~~~~q~~~~~~-~-~~~~~~ll~~il~~~--~f-------tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~ 374 (469)
+..+-.++.+++..|.... . ..-+..|+.+++-.. -+ .-+++|=.+.+. ...+...+.+.+. .
T Consensus 8 ~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~--t~~d~t~~~~~~~----~ 81 (149)
T PF00675_consen 8 PGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNAS--TSRDSTSYSASVL----S 81 (149)
T ss_dssp TTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEE--EESSEEEEEEEEE----G
T ss_pred CCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceE--ecccceEEEEEEe----c
Confidence 3445567777888876432 2 234566676655422 22 333455333222 2233333333332 2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhc
Q psy8002 375 LFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITT 431 (469)
Q Consensus 375 ~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~ 431 (469)
+++...++-+-+.+.. -.+++++|++.|..++..+.....+....+...+.....
T Consensus 82 ~~~~~~l~~l~~~~~~--P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f 136 (149)
T PF00675_consen 82 EDLEKALELLADMLFN--PSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAF 136 (149)
T ss_dssp GGHHHHHHHHHHHHHS--BGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 3344444333332221 368999999999999998888777766666666665543
No 30
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=48.18 E-value=29 Score=29.71 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=32.5
Q ss_pred ccCCCHHHHHHHHHHHHH-hHhhheeeecCCChHHHHHHHHH
Q psy8002 226 LDGITREKLVEFSHDLLS-KMFIEALIHGNANKQVGLSIVKM 266 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~-~~~~~~lv~Gn~~~~~a~~l~~~ 266 (469)
|++++++++++..+.... ..++.+.++|+++.+.+.++.+.
T Consensus 106 lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 106 LDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred ecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 467899999999987643 34699999999999999887643
No 31
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=44.02 E-value=1.3e+02 Score=22.16 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHH---HhHHhhhccccccccchHHHHHHhcCC
Q psy8002 374 PLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSS---RFWLEITTQQYNFDRANIEVAYLKSVT 450 (469)
Q Consensus 374 ~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~---~~w~~i~~~~~~f~~~~~~~~~l~~lT 450 (469)
...+.+.|-.-+.++...| ++++.+++.++.. .+.+..+++. ..|.+-. |. -...+..+++|+.+.
T Consensus 7 l~~ia~~lG~dW~~LAr~L-g~~~~dI~~i~~~-------~~~~~~eq~~~mL~~W~~r~-g~--~at~~~L~~AL~~i~ 75 (84)
T cd08317 7 LADISNLLGSDWPQLAREL-GVSETDIDLIKAE-------NPNSLAQQAQAMLKLWLERE-GK--KATGNSLEKALKKIG 75 (84)
T ss_pred HHHHHHHHhhHHHHHHHHc-CCCHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHhc-CC--cchHHHHHHHHHHcC
Confidence 3455666666666666544 6999999998763 2333333333 3455532 21 234578899999999
Q ss_pred HHHHHHHH
Q psy8002 451 KENVLKFY 458 (469)
Q Consensus 451 ~edv~~~~ 458 (469)
+.|+.+-+
T Consensus 76 r~Di~~~~ 83 (84)
T cd08317 76 RDDIVEKC 83 (84)
T ss_pred hHHHHHHh
Confidence 99998754
No 32
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=42.65 E-value=1.1e+02 Score=22.79 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCChhhHHHH---hHHhhhccccccccchHHHHHHhcCCHHHHHHH
Q psy8002 394 NMPDEEFQSHKEALSAQRLEKPKKLSGLSSR---FWLEITTQQYNFDRANIEVAYLKSVTKENVLKF 457 (469)
Q Consensus 394 ~~seeef~~~k~~l~~~l~~~~~sl~~~~~~---~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~ 457 (469)
++|+.++..++.. .+.++.+++.. .|.+- .......+..+.+|+++.+.|+...
T Consensus 26 ~vs~~dI~~I~~e-------~p~~l~~Q~~~~L~~W~~r---~g~~At~~~L~~AL~~i~R~div~~ 82 (84)
T cd08805 26 QFSVEDINRIRVE-------NPNSLLEQSTALLNLWVDR---EGENAKMSPLYPALYSIDRLTIVNM 82 (84)
T ss_pred CCCHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHh---cCccchHHHHHHHHHHCChHHHHHh
Confidence 7999999998873 34444444443 45443 2233455688999999999998765
No 33
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=40.30 E-value=99 Score=22.65 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Q psy8002 373 HPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLE 413 (469)
Q Consensus 373 ~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~ 413 (469)
+|+.+...+.+.-..+. ...+|+++|++..+.|+..+..
T Consensus 29 Dp~~i~~~L~~L~~~~e--~GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 29 DPAAIRRELAELQEALE--AGEISEEEFERREDELLDRLEE 67 (79)
T ss_pred CHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHH
Confidence 66655555544433322 2789999999999999988763
No 34
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=39.56 E-value=2.2e+02 Score=23.67 Aligned_cols=41 Identities=12% Similarity=0.005 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcC
Q psy8002 373 HPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEK 414 (469)
Q Consensus 373 ~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~ 414 (469)
++..+.+.|+...+.+. .++++|.+|++.++..+...+..-
T Consensus 12 ~~~~L~~~le~a~e~~~-~~~elT~eEl~lv~~ylkRDl~~~ 52 (146)
T PF07295_consen 12 SEEELQEALEKAKEYLV-AAGELTREELALVSAYLKRDLEEF 52 (146)
T ss_pred CHHHHHHHHHHHHHHHH-HHhhcCHHHHHHHHHHHHHHHHHH
Confidence 66677777777665443 358999999999999999988753
No 35
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=33.89 E-value=1.4e+02 Score=22.22 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCChhhHHH---HhHHhhhccccccccchHHHHHHhcCCHHHHHHHH
Q psy8002 394 NMPDEEFQSHKEALSAQRLEKPKKLSGLSS---RFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFY 458 (469)
Q Consensus 394 ~~seeef~~~k~~l~~~l~~~~~sl~~~~~---~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~ 458 (469)
++++.++..++. +.+.++.+++. +.|..-.. ..-..+....+|.++.+.|+.+..
T Consensus 26 g~s~~dI~~i~~-------e~p~~~~~q~~~lL~~W~~r~g---~~At~~~L~~aL~~i~R~DIv~~~ 83 (84)
T cd08803 26 NFSVDEINQIRV-------ENPNSLIAQSFMLLKKWVTRDG---KNATTDALTSVLTKINRIDIVTLL 83 (84)
T ss_pred CCCHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHhhC---CCcHHHHHHHHHHHCCcHHHHHhc
Confidence 789999998865 33455554444 34554321 223446788999999999998753
No 36
>PF12674 Zn_ribbon_2: Putative zinc ribbon domain
Probab=33.34 E-value=74 Score=23.44 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=30.2
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHh
Q psy8002 226 LDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQ 272 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~ 272 (469)
...+|++++.++...++...+- +++++|+.++..++..|+
T Consensus 39 t~~~t~eemie~~~~~~~~~~~-------~~~~~a~~~~~~~lp~Lk 78 (81)
T PF12674_consen 39 TQDITMEEMIEFCVPFMDEFNG-------MTPEEARKMMPRYLPTLK 78 (81)
T ss_pred eecCCHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHccCCc
Confidence 3478999999998888766432 899999998877655444
No 37
>PF14270 DUF4358: Domain of unknown function (DUF4358)
Probab=32.76 E-value=2.2e+02 Score=21.97 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=38.8
Q ss_pred CcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy8002 348 GYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALS 408 (469)
Q Consensus 348 gY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~ 408 (469)
+|.++.+.......--+.|-+....+.+.+.+.|+..++...+...+.-+++...++++.+
T Consensus 33 ~~~~~~s~~~~~~~ei~v~k~kd~~~~e~Vk~~l~~r~~~q~~~f~~Y~p~q~~~l~~a~v 93 (106)
T PF14270_consen 33 DYVIYMSMSNMSADEIAVFKAKDGKQAEDVKKALEKRLESQKKSFEGYLPEQYELLENAKV 93 (106)
T ss_pred eEEEEeccccCCccEEEEEEECCcCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHhcCEE
Confidence 4666655543333222222223333689999999999998888777777788887766543
No 38
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=32.16 E-value=65 Score=21.13 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHHhh
Q psy8002 390 DLISNMPDEEFQSHKEALSAQRL 412 (469)
Q Consensus 390 ~~l~~~seeef~~~k~~l~~~l~ 412 (469)
+.|..||++|+...++.|+..+-
T Consensus 10 ~rL~~MS~eEI~~er~eL~~~Ld 32 (49)
T PF08621_consen 10 ARLASMSPEEIEEEREELLESLD 32 (49)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC
Confidence 45689999999999999988763
No 39
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=31.97 E-value=1.8e+02 Score=22.08 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=9.9
Q ss_pred HcCCCHHHHHHHHHHHHHHhhc
Q psy8002 392 ISNMPDEEFQSHKEALSAQRLE 413 (469)
Q Consensus 392 l~~~seeef~~~k~~l~~~l~~ 413 (469)
+..||.+++...+..+...+..
T Consensus 57 ~~~ms~~e~~k~~~ev~k~~~~ 78 (93)
T PF06518_consen 57 LSKMSVEERKKRREEVRKALEK 78 (93)
T ss_dssp HTTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444443
No 40
>cd08334 DED_Caspase_8_10_repeat2 Death effector domain, repeat 2, of initator caspases 8 and 10. Death Effector Domain (DED) found in caspase-8 and caspase-10, repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis, and they play partially redundant roles. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. They contain two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains foun
Probab=31.59 E-value=2e+02 Score=21.30 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhcc-ccccccchHHHHHHhcCCHHHHHHHHHhh
Q psy8002 389 KDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQ-QYNFDRANIEVAYLKSVTKENVLKFYDKR 461 (469)
Q Consensus 389 ~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~-~~~f~~~~~~~~~l~~lT~edv~~~~~~~ 461 (469)
.++-+++|+++++..|--+...+....-.-..-+-..+.++... -...+...-..+.+..| +.|+.+-.++|
T Consensus 9 ~~Ise~Lt~~dl~~lKFLc~d~ip~~kle~~~s~ldlf~~Lek~~~l~~~nl~~L~elL~~i-r~dLl~~I~~y 81 (83)
T cd08334 9 YEISEDLTKENLDKLKFLLSSKLPRSKLEDNKTLLDVFVEMEKQGLLGEDNLDELKRILKSL-DKKLAKKIEKY 81 (83)
T ss_pred HHHHHhcCHHHHHHHHHHhHhhcchhhhhccCCHHHHHHHHHHcCCCCCccHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33337899999999987665544422110001122233333322 23334445567788889 99988887776
No 41
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=31.55 E-value=1.1e+02 Score=26.12 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHH
Q psy8002 373 HPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKE 452 (469)
Q Consensus 373 ~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~e 452 (469)
.+..+.+.|.+|- +-|-++++..-. . ..++.+.+...+.|..|. +..+++++||.+
T Consensus 18 ~VGqmSElI~e~~--------~kt~eeWe~wY~---~---~~~e~i~~a~~ki~~~i~----------e~~~a~~~it~e 73 (170)
T PF09568_consen 18 NVGQMSELIRECK--------PKTIEEWEEWYF---E---KYPEAIEEATDKIYVMIT----------EVKEALNKITEE 73 (170)
T ss_pred ccchHHHHHHHcC--------CCCHHHHHHHHH---h---cChHHHHHHHHHHHHHHH----------HHHHHHHhCCHH
Confidence 4444555555443 456666666532 2 256667777888887663 334679999999
Q ss_pred HHHHHHHhhcCC
Q psy8002 453 NVLKFYDKRNYT 464 (469)
Q Consensus 453 dv~~~~~~~~~~ 464 (469)
|+.+|.+.++..
T Consensus 74 d~~~wv~dLvi~ 85 (170)
T PF09568_consen 74 DCINWVKDLVIN 85 (170)
T ss_pred HHHHHHHHheee
Confidence 999999987654
No 42
>cd08305 Pyrin Pyrin: a protein-protein interaction domain. The Pyrin domain (or PYD), also called DAPIN or PAAD, is a subfamily of the Death Domain (DD) superfamily and it functions in several signaling pathways. The Pyrin domain is found at the N-terminus of a variety of proteins and serves as a linker that recruits other domains into signaling complexes. Pyrin-containing proteins include NALPs, ASC (Apoptosis-associated speck-like protein containing a CARD), and the interferon-inducible p200 (IFI-200) family of proteins which includes the human IFI-16, myeloid cell nuclear differentiation antigen (MNDA) and absent in melanoma (AIM) 2. NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case
Probab=30.98 E-value=1.2e+02 Score=21.69 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=37.2
Q ss_pred HHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHh-HHhhhccccccc-cchHHHHHHhcCCHHHHHH
Q psy8002 391 LISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRF-WLEITTQQYNFD-RANIEVAYLKSVTKENVLK 456 (469)
Q Consensus 391 ~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~-w~~i~~~~~~f~-~~~~~~~~l~~lT~edv~~ 456 (469)
.|++++++||++.|.-|...+...+....+.+ +. -.......|.-+ ..+..+..++.+...|+-+
T Consensus 4 ~Le~L~~~efk~FK~~L~~~~~~~~~~~~~~a-~~~la~lL~~~y~~~~a~~~t~~i~~~m~~~dlae 70 (73)
T cd08305 4 GLENITDEELKRFKSLLANDLFLETKAQLEYT-RIQIADLMEQKFGAVSALDKLINIFEDMPLRSLAN 70 (73)
T ss_pred HHHHcCHHHHHHHHHHHHhcCCCCCccccccc-HHHHHHHHHHHcChhHHHHHHHHHHHHcChHHHHH
Confidence 45789999999999988876444444333333 21 112222222222 2245567777787777654
No 43
>PF08494 DEAD_assoc: DEAD/H associated; InterPro: IPR013701 This domain is found in ATP-dependent helicases as well as a number of hypothetical proteins together with the helicase conserved C-terminal domain (IPR011545 from INTERPRO) and the IPR001650 from INTERPRO domain. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
Probab=29.64 E-value=3.8e+02 Score=23.29 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeec
Q psy8002 106 DPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGY 154 (469)
Q Consensus 106 ~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~ 154 (469)
.--+.+++.+++..+.. ..|.++++..+.+|+.|.....
T Consensus 29 ~~vN~~L~~lla~~l~~----------~~~~~v~~~~~dygi~l~~~~~ 67 (187)
T PF08494_consen 29 RRVNEALARLLAYRLSR----------RYGLSVSVSVDDYGIVLSLPEP 67 (187)
T ss_pred HHHHHHHHHHHHHHHHH----------hcCCCeEEEEcCCEEEEEcCCC
Confidence 34566677766666655 4567888899999999998876
No 44
>PLN02344 chorismate mutase
Probab=28.56 E-value=42 Score=30.82 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=33.9
Q ss_pred ccccccccccccccccccccccccc--cccccccH---HHHHhhcCCCCCCCCCCCCCccCCCCCCCCCCCeEEe
Q psy8002 3 TKDCTGVGGACKARVNNIVKSEFDK--REYRGLEL---QNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILY 72 (469)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~y~--~~Y~~~~i---~~~~~~~~~P~~N~fip~~f~~~~~~~~~~~~P~~i~ 72 (469)
.|-++|..|+..+ .-|-| .+|-+.+. ...+.++.+|..+||.|+++-- +. -....+|.+++
T Consensus 65 ~N~~~Y~~~~~~~-------~~f~gS~le~~l~etE~lha~vrRY~sPDE~PFFP~~Lp~-pi-lpp~~yP~vLh 130 (284)
T PLN02344 65 YNAPTYDPNAFGV-------PGFHGSLVEFMVRETEALHAKVGRYKSPDEHPFFPEDLPE-PV-LPPLQYPQVLH 130 (284)
T ss_pred cCccccCCCCcCC-------CCCCccHHHHHHHHHHHHHHhhcccCCCCcCCCChhhccc-cc-CCCCCCCcccC
Confidence 3555666666544 12222 33443332 3355677779999999988741 11 11335777664
No 45
>KOG2583|consensus
Probab=27.52 E-value=6.1e+02 Score=25.04 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=62.3
Q ss_pred eCcc-eEEEEeecCccHHHHHHHHHHHHccCC-CCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHH
Q psy8002 143 TKYG-MMLGISGYSHKQSVLLSKVLDKLADFS-NHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKT 220 (469)
Q Consensus 143 ~~~g-~~i~~~G~s~~l~~ll~~i~~~l~~~~-~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~ 220 (469)
++.| +.+.+++-..+....+.-....++... ..++-..-......+...+.+ ...++..+......+. -+..
T Consensus 313 sDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~s--s~~a~~~~~~~~a~~~----~~~d 386 (429)
T KOG2583|consen 313 SDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLS--SVEALELATGSQANLV----SEPD 386 (429)
T ss_pred cCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhc--chHHHHHhhHHHhcCC----CChH
Confidence 4445 666777666666666666666666541 023333333333333333333 1223333332222111 1667
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCC
Q psy8002 221 ELLESLDGITREKLVEFSHDLLSKMFIEALIHGNAN 256 (469)
Q Consensus 221 ~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~ 256 (469)
..+..|+.++..|+.+..+++.. ..+-+..+||++
T Consensus 387 ~~i~~id~Vt~sdV~~a~kk~~s-~kls~aA~Gnl~ 421 (429)
T KOG2583|consen 387 AFIQQIDKVTASDVQKAAKKFLS-GKLSLAAYGNLS 421 (429)
T ss_pred HHHHHhccccHHHHHHHHHHhcc-Ccceeeeecccc
Confidence 88999999999999999999873 345678889876
No 46
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.38 E-value=95 Score=29.03 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=32.4
Q ss_pred ccCCCHHHHHHHHHHHHH---hHhhheeeecCCChHHHHHHHHH
Q psy8002 226 LDGITREKLVEFSHDLLS---KMFIEALIHGNANKQVGLSIVKM 266 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~---~~~~~~lv~Gn~~~~~a~~l~~~ 266 (469)
|++++.+++++.....-. +.++.+.++|+++.+.+.++++.
T Consensus 208 LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 208 LDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred ECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 577889999988876533 24788999999999998887653
No 47
>cd08336 DED_FADD Death Effector Domain found in Fas-Associated via Death Domain. Death Effector Domain (DED) found in Fas-Associated via Death Domain (FADD). DEDs comprise a subfamily of the Death Domain (DD) superfamily. FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor and its DED recruits the initiator caspases 8 and 10 to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily incl
Probab=26.06 E-value=2.7e+02 Score=20.46 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=38.9
Q ss_pred HcCCCHHHHHHHHHHHHHHhhc----CCCChhhHHHHhHHhhhccc-cccccchHHHHHHhcCCHHHHHHHHHhh
Q psy8002 392 ISNMPDEEFQSHKEALSAQRLE----KPKKLSGLSSRFWLEITTQQ-YNFDRANIEVAYLKSVTKENVLKFYDKR 461 (469)
Q Consensus 392 l~~~seeef~~~k~~l~~~l~~----~~~sl~~~~~~~w~~i~~~~-~~f~~~~~~~~~l~~lT~edv~~~~~~~ 461 (469)
-+++++++++..|--+...+.. ...+. -.++......+ ..-+...-..+.+.++.+.|+.+-.++|
T Consensus 11 s~~L~~~dl~~lKFLc~d~i~~~~le~~~s~----l~lf~~Le~~~~i~~~nl~~L~~lL~~i~R~DL~~~i~~y 81 (82)
T cd08336 11 SNSLSDSELESLKFLCRDKIGKRKLEKVQSG----LQLFSALMERNLISPENTAFLRELLQSIKRDDLIQKLQQF 81 (82)
T ss_pred HHhcCHHHHHHHHHHhhhhcChHhhhccCCH----HHHHHHHHHcCCCCcchHHHHHHHHHHcCHHHHHHHHHhc
Confidence 3689999999999644332221 11222 22333332222 2233334567888999999998888776
No 48
>PF07609 DUF1572: Protein of unknown function (DUF1572); InterPro: IPR011466 This protein represents proteins with unknown function found in several diverse bacteria.
Probab=25.32 E-value=67 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHH---HHHHHcCCCHHHHHHHH
Q psy8002 375 LFVDSRIEAFLAQ---MKDLISNMPDEEFQSHK 404 (469)
Q Consensus 375 ~~l~~~I~~fl~~---~~~~l~~~seeef~~~k 404 (469)
.++...+..|-.. ..+.++.++++++-...
T Consensus 5 ~yl~~~~~~f~~~k~~~~~~l~ql~de~l~w~~ 37 (163)
T PF07609_consen 5 EYLESVIKRFEYYKRLGEKALAQLSDEQLWWRP 37 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhcc
Confidence 4566666666543 34456778888766543
No 49
>KOG0795|consensus
Probab=24.92 E-value=46 Score=29.17 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=29.0
Q ss_pred cccccccccccccccccccccccc--cccccccH---HHHHhhcCCCCCCCCCCCCC
Q psy8002 4 KDCTGVGGACKARVNNIVKSEFDK--REYRGLEL---QNGMKKWTNPSPNEFIATDF 55 (469)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~y~--~~Y~~~~i---~~~~~~~~~P~~N~fip~~f 55 (469)
|-.++-+++|-. +-+.| ++|-+... ...+.++++|..+||.|+++
T Consensus 44 n~~~ye~~~~~~-------~gf~gSl~e~~v~etEk~hakV~Ry~sPdE~PFfpd~l 93 (262)
T KOG0795|consen 44 NADVYEENAFGM-------EGFKGSLLEYMVRETEKLHAKVRRYESPDEHPFFPDNL 93 (262)
T ss_pred CccccccCCCCC-------CCcchHHHHHHHHhHHHHHHHHhcccCCccCCCccccC
Confidence 444455555553 34444 46666543 34567788899999999887
No 50
>PF06464 DMAP_binding: DMAP1-binding Domain; InterPro: IPR010506 This domain binds DMAP1, a transcriptional co-repressor.; GO: 0008134 transcription factor binding, 0005634 nucleus
Probab=23.73 E-value=1.7e+02 Score=23.03 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Q psy8002 373 HPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLE 413 (469)
Q Consensus 373 ~~~~l~~~I~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~ 413 (469)
=|.+|..++.+.-.++.. ++||+..+++-|..|+..+..
T Consensus 5 LP~evq~~L~~L~~el~~--GdiT~KGY~kkr~~LL~~yl~ 43 (111)
T PF06464_consen 5 LPPEVQNRLQELDLELEE--GDITQKGYEKKRSKLLAPYLP 43 (111)
T ss_pred CCHHHHHHHHHHHHhhhc--CcchHHHHHHHHHHHHHHHHh
Confidence 466777777776665544 689999999999999999884
No 51
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=23.00 E-value=86 Score=21.75 Aligned_cols=22 Identities=5% Similarity=0.262 Sum_probs=18.1
Q ss_pred HhcCCHHHHHHHHHhhcCCCCC
Q psy8002 446 LKSVTKENVLKFYDKRNYTESL 467 (469)
Q Consensus 446 l~~lT~edv~~~~~~~~~~~s~ 467 (469)
+.+++.+||+.|+..|+....|
T Consensus 13 vd~lsT~dI~~y~~~y~~~~~~ 34 (62)
T PF10309_consen 13 VDELSTDDIKAYFSEYFDEEGP 34 (62)
T ss_pred CCCCCHHHHHHHHHHhcccCCC
Confidence 5779999999999999765544
No 52
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=22.50 E-value=69 Score=20.58 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=19.7
Q ss_pred CHHHHHHHHHH-HHHhHhhheeee-cCCChHHHHHH
Q psy8002 230 TREKLVEFSHD-LLSKMFIEALIH-GNANKQVGLSI 263 (469)
Q Consensus 230 t~edl~~f~~~-~~~~~~~~~lv~-Gn~~~~~a~~l 263 (469)
|+++++.++.- ++.+..+..+|. |-|+++|..++
T Consensus 5 ~~e~iK~~Y~~g~~t~e~v~~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 5 SFEKVKTYYLWGYYSNEDVNKFVEKKLITREQYKVI 40 (45)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHhhcCccCHHHHHHH
Confidence 56677666553 234444555444 67777776654
No 53
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.46 E-value=1.6e+02 Score=25.43 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Q psy8002 382 EAFLAQMKDLISNMPDEEFQSHKEALSAQRLE 413 (469)
Q Consensus 382 ~~fl~~~~~~l~~~seeef~~~k~~l~~~l~~ 413 (469)
++|++++++.|.+++++|.+.+.+.+.....+
T Consensus 4 ~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d 35 (181)
T PF08006_consen 4 NEFLNELEKYLKKLPEEEREEILEYYEEYFDD 35 (181)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888887766665554
No 54
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=22.06 E-value=97 Score=17.96 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=9.1
Q ss_pred cCCHHHHHHHHHh
Q psy8002 448 SVTKENVLKFYDK 460 (469)
Q Consensus 448 ~lT~edv~~~~~~ 460 (469)
.+|++||.+|.+.
T Consensus 16 Gls~eeir~FL~~ 28 (30)
T PF08671_consen 16 GLSKEEIREFLEF 28 (30)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 5999999999863
No 55
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=22.02 E-value=53 Score=20.69 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHhHhhheeeecC
Q psy8002 228 GITREKLVEFSHDLLSKMFIEALIHGN 254 (469)
Q Consensus 228 ~it~edl~~f~~~~~~~~~~~~lv~Gn 254 (469)
..+.++|..|++.+ ++ .-.++|+|+
T Consensus 17 Had~~~L~~~i~~~-~p-~~vilVHGe 41 (43)
T PF07521_consen 17 HADREELLEFIEQL-NP-RKVILVHGE 41 (43)
T ss_dssp S-BHHHHHHHHHHH-CS-SEEEEESSE
T ss_pred CCCHHHHHHHHHhc-CC-CEEEEecCC
Confidence 35678999999988 66 667888885
No 56
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.55 E-value=1.3e+02 Score=28.13 Aligned_cols=40 Identities=15% Similarity=0.010 Sum_probs=31.4
Q ss_pred ccCCCHHHHHHHHHHHHH-hHhhheeeecCCChHHHHHHHH
Q psy8002 226 LDGITREKLVEFSHDLLS-KMFIEALIHGNANKQVGLSIVK 265 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~-~~~~~~lv~Gn~~~~~a~~l~~ 265 (469)
|++++++++++.++..-. ..++.+.+.|+++++.+.++++
T Consensus 208 LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~ 248 (273)
T PRK05848 208 CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAK 248 (273)
T ss_pred ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHH
Confidence 578899999999874321 1367899999999999988754
No 57
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.46 E-value=1.3e+02 Score=28.40 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=30.9
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHH
Q psy8002 226 LDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKM 266 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~ 266 (469)
|++++++++++..+.. +.++.+-++|+++.+.+.++++.
T Consensus 231 LDnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~t 269 (294)
T PRK06978 231 LDNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAET 269 (294)
T ss_pred ECCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHhc
Confidence 4678999999988744 34788999999999988887643
No 58
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=20.92 E-value=77 Score=20.89 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=12.2
Q ss_pred HhcCCHHHHHHHHHhhc
Q psy8002 446 LKSVTKENVLKFYDKRN 462 (469)
Q Consensus 446 l~~lT~edv~~~~~~~~ 462 (469)
|++||+.++++|+++++
T Consensus 42 i~~It~~~i~~~~~~l~ 58 (58)
T PF14659_consen 42 IKDITPRDIQNFINELL 58 (58)
T ss_dssp GGG--HHHHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHcC
Confidence 77899999999998763
No 59
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=20.87 E-value=1.2e+02 Score=28.51 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=30.8
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHH
Q psy8002 226 LDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVK 265 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~ 265 (469)
|++++.+++++.++.. ..++.+-++|+++.+.+.++++
T Consensus 234 LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~ 271 (296)
T PRK09016 234 LDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAE 271 (296)
T ss_pred eCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHh
Confidence 4678899999988843 3478899999999998888754
No 60
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.70 E-value=1.4e+02 Score=28.06 Aligned_cols=41 Identities=10% Similarity=-0.061 Sum_probs=31.7
Q ss_pred ccCCCHHHHHHHHHHHH-HhHhhheeeecCCChHHHHHHHHH
Q psy8002 226 LDGITREKLVEFSHDLL-SKMFIEALIHGNANKQVGLSIVKM 266 (469)
Q Consensus 226 l~~it~edl~~f~~~~~-~~~~~~~lv~Gn~~~~~a~~l~~~ 266 (469)
|+++++++++...+..- ...++.+.++|+++.+.+.++++.
T Consensus 225 LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~t 266 (289)
T PRK07896 225 LDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAET 266 (289)
T ss_pred eCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 46888999999887432 234788999999999998887653
No 61
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.60 E-value=1.2e+02 Score=28.19 Aligned_cols=41 Identities=17% Similarity=-0.033 Sum_probs=32.7
Q ss_pred ccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHH
Q psy8002 226 LDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKM 266 (469)
Q Consensus 226 l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~ 266 (469)
|++++++++++..+.+-...++.+-++||++.+.+..++..
T Consensus 214 LDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~t 254 (280)
T COG0157 214 LDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYAET 254 (280)
T ss_pred ecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhc
Confidence 46788999999888764445888999999999988776543
No 62
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=20.53 E-value=99 Score=21.57 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.3
Q ss_pred hcCCHHHHHHHHHhhcCCCCCC
Q psy8002 447 KSVTKENVLKFYDKRNYTESLN 468 (469)
Q Consensus 447 ~~lT~edv~~~~~~~~~~~s~~ 468 (469)
..+|.+|+..|++.|+....|+
T Consensus 42 ~~~t~~dln~Flk~W~~G~~~~ 63 (70)
T PF07735_consen 42 SKFTNEDLNKFLKHWINGSNPR 63 (70)
T ss_pred CCCCHHHHHHHHHHHHcCCCcC
Confidence 3499999999999999876553
No 63
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=20.51 E-value=3.3e+02 Score=19.41 Aligned_cols=68 Identities=6% Similarity=0.118 Sum_probs=40.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhc
Q psy8002 386 AQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRN 462 (469)
Q Consensus 386 ~~~~~~l~~~seeef~~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~ 462 (469)
..+...| ++++.+++.++..--. ..+....+=..|..-.. . =......+++|+.+...|+.+.++.++
T Consensus 16 k~La~~L-g~~~~~i~~i~~~~~~-----~~~~~~~~L~~W~~~~~-~--~at~~~L~~aL~~~~~~d~~~~i~~~~ 83 (83)
T PF00531_consen 16 KRLARKL-GLSESEIENIEEENPD-----LREQTYEMLQRWRQREG-P--NATVDQLIQALRDIGRNDLAEKIEQML 83 (83)
T ss_dssp HHHHHHT-TS-HHHHHHHHHHSTS-----HHHHHHHHHHHHHHHHG-S--TSSHHHHHHHHHHTTHHHHHHHHHHH-
T ss_pred HHHHHHh-CcCHHHHHHHHHhCCC-----hHHHHHHHHHHHHHhcC-C--CCcHHHHHHHHHHCCcHHHHHHHHhhC
Confidence 3344333 8999999988772110 00112233345655411 1 234568899999999999999988764
Done!